Query psy9484
Match_columns 407
No_of_seqs 152 out of 214
Neff 5.5
Searched_HMMs 29240
Date Fri Aug 16 20:35:40 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9484.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9484hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4elj_A Retinoblastoma-associat 100.0 1.4E-73 5E-78 606.5 19.5 284 10-380 5-303 (656)
2 2qdj_A Retinoblastoma-associat 100.0 4.8E-72 1.7E-76 551.4 20.7 277 10-365 3-297 (304)
3 4ell_A Retinoblastoma-associat 99.6 5.7E-17 1.9E-21 165.1 1.6 101 187-308 103-210 (411)
4 2r7g_A PP110, retinoblastoma-a 99.5 2.4E-15 8.2E-20 150.4 0.7 90 194-299 106-198 (347)
5 4elj_A Retinoblastoma-associat 99.4 1.8E-14 6.1E-19 153.8 2.1 89 194-298 413-504 (656)
6 4bbr_M Transcription initiatio 96.0 0.027 9.1E-07 56.0 10.0 87 8-106 128-215 (345)
7 1ais_B TFB TFIIB, protein (tra 95.4 0.073 2.5E-06 48.0 9.5 82 13-106 112-194 (200)
8 1ais_B TFB TFIIB, protein (tra 95.2 0.15 5.2E-06 45.8 11.0 76 9-96 12-88 (200)
9 3k7a_M Transcription initiatio 95.0 0.016 5.6E-07 57.4 4.4 74 9-94 129-203 (345)
10 1c9b_A General transcription f 94.9 0.11 3.7E-06 47.2 9.3 58 8-65 7-65 (207)
11 1c9b_A General transcription f 90.7 1.1 3.6E-05 40.5 9.2 72 11-94 104-176 (207)
12 2r7g_A PP110, retinoblastoma-a 90.3 0.35 1.2E-05 48.2 6.0 68 9-88 218-289 (347)
13 4ell_A Retinoblastoma-associat 89.3 0.41 1.4E-05 48.8 5.6 54 9-62 282-339 (411)
14 3m03_A ORC6, origin recognitio 86.6 2.5 8.6E-05 34.6 7.7 79 14-105 7-91 (95)
15 4bbr_M Transcription initiatio 64.5 1.4 4.7E-05 43.6 0.0 67 13-91 239-306 (345)
16 1zp2_A RNA polymerase II holoe 56.5 36 0.0012 30.9 8.2 52 11-62 33-86 (235)
17 1u5t_A Appears to BE functiona 56.5 17 0.00057 34.2 5.9 84 5-104 56-144 (233)
18 3k7a_M Transcription initiatio 41.8 5.4 0.00019 39.1 0.0 49 14-62 240-289 (345)
19 2i53_A Cyclin K; cell cycle, t 40.9 48 0.0016 30.3 6.4 63 13-87 48-111 (258)
20 2ivx_A Cyclin-T2; transcriptio 38.4 1.2E+02 0.0041 27.7 8.7 50 13-62 38-88 (257)
21 1jkw_A Cyclin H; cell cycle, c 35.7 60 0.002 31.3 6.4 63 13-87 64-129 (323)
22 2b9r_A Human cyclin B1; cell c 32.8 1.3E+02 0.0046 27.8 8.1 50 13-62 45-95 (269)
23 3rgf_B Cyclin-C; protein kinas 31.0 56 0.0019 30.8 5.2 50 13-62 50-100 (285)
24 2pk2_A Cyclin-T1, protein TAT; 30.2 89 0.0031 30.6 6.7 50 13-62 45-95 (358)
25 2w96_A G1/S-specific cyclin-D1 29.3 2E+02 0.0069 26.5 8.7 99 13-111 64-174 (271)
26 2ivx_A Cyclin-T2; transcriptio 27.6 3.4E+02 0.012 24.5 10.3 50 13-62 150-201 (257)
27 3lfp_A CSP231I C protein; tran 26.9 72 0.0025 24.4 4.4 37 79-115 49-89 (98)
28 1zp2_A RNA polymerase II holoe 22.5 1.1E+02 0.0039 27.5 5.4 49 13-61 138-187 (235)
29 1g3n_C V-cyclin; cyclin-depend 21.4 2.5E+02 0.0086 25.6 7.7 50 13-62 58-108 (257)
30 3cuq_A Vacuolar-sorting protei 21.2 50 0.0017 31.0 2.7 83 6-103 37-129 (234)
31 3rgf_B Cyclin-C; protein kinas 20.5 2E+02 0.0068 26.9 6.9 51 12-62 160-211 (285)
No 1
>4elj_A Retinoblastoma-associated protein; cyclin fold, tumor suppressor protein, phosphorylation, cell; HET: TPO; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.4e-73 Score=606.46 Aligned_cols=284 Identities=21% Similarity=0.342 Sum_probs=232.9
Q ss_pred HHHHHHHhhhcCCCHHHHHHHHHHHHHhhc-c----cCccccchhhhHHHHhhhhhccccCccCCCccccCCcccHHHHH
Q psy9484 10 AHQHQELCMALNIDSTTAKEAWNAYKEMSH-H----YTLEGSQLHWLGCSLYVSCRKATVPTVNSNRTIEGNLVCLTSLL 84 (407)
Q Consensus 10 ~~~f~~lC~~LnlD~~t~~~Aw~~~~~~~~-~----~tlEg~~~~W~aCaLY~a~r~~~~~tv~~~~~~~~n~vsLt~LL 84 (407)
+++|+++|++||||++|+++||++|++++. + ||+||+++||+||++|+|| .++||||||||||
T Consensus 5 ~~~f~~lC~~Ln~d~~~~~~Aw~~~~~~~~~~~~l~~tleg~~~~W~aC~ly~~~------------~~~gn~vsLt~lL 72 (656)
T 4elj_A 5 EPDFTALCQKLKIPDHVRERAWLTWEKVSSVDGVLGGYIQKKKELWGICIFIAAV------------DLDEMSFTFTELQ 72 (656)
T ss_dssp CHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCSCC-----CCHHHHHHHHHHHHH------------HTTCCCSCHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHhccccccCCcccchHHhhhhhheeee------------eccCCeeeHHHHH
Confidence 389999999999999999999999999996 3 7899999999999999995 3468999999999
Q ss_pred hhhCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhhHHHHHHHHhHHHHhccCCCCCCchhhhhhhcccccccccch
Q psy9484 85 KHCKMSLNQFLNKCRKWADMRKLPDSFRSKIARLERNFAVSKVIFTKYLPMFKEMFKPPDLDELLMHVRHNKKKMIHCTS 164 (407)
Q Consensus 85 r~~~lsi~~Ff~kl~kw~~~~~L~~e~~~~i~~Le~~f~v~~vLfkky~~iF~~iF~~p~~~~~~~~~r~~k~~~~~c~~ 164 (407)
|+++|||+|||+||+|| +| |++++.++++||+||+|+++|||||+++|++||..|++++ + +.+|++
T Consensus 73 r~~~lsl~~FF~kikk~-dm---~~~~~~~i~rLE~kF~v~~vlfkky~~if~~iF~~p~~~~-~---------~~~~~~ 138 (656)
T 4elj_A 73 KNIEISVHKFFNLLKEI-DT---STKVDNAMSRLLKKYDVLFALFSKLERTCELIYLTQPSSS-I---------STEINS 138 (656)
T ss_dssp HHHTCCHHHHHHHHHHS-CC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTBCCC------------------CCH
T ss_pred HHhcCCHHHHHHHhHhc-cC---cHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCCccc-C---------CCCCCH
Confidence 99999999999999997 55 9999999999999999999999999999999999997332 1 247999
Q ss_pred hhHHHHHHHHHHHHHhhccccccchhhhhhHHHHHHHHHHHhhhhcccccccCCCCCCCCCCCCCCCCCCCCCCchHHHH
Q psy9484 165 TKVFEFTWILFVLTKAEYLDVSNDLVNSFHLLIATCDLIYANVIQSKLRDIVNPDFEGMPSNFLDSHFAPLDDPPCIISI 244 (407)
Q Consensus 165 ~~lf~f~WlLFL~~K~~~~~~~~DLV~s~~LLlC~Ldlvi~n~~~~~~~~lln~~F~~~~~~~~~~~f~~~~~~~~ILe~ 244 (407)
+++|+|||+|||++||++++++||||+|||||+||||++|.|+ |++++||+|+|+| ++++++||+.
T Consensus 139 ~~~~~f~W~LFl~~K~~~~~~~~DLV~s~hLLlc~ldl~~~~~----p~dlln~~~~~~~----------~~~~~~il~~ 204 (656)
T 4elj_A 139 ALVLKVSWITFLLAKGEVLQMEDDLVISFQLMLCVLDYFIKLS----PPMLLKEPYKTAV----------IENDTRIIEV 204 (656)
T ss_dssp HHHHHHHHHHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHHHS----CGGGBCHHHHTTC----------C--CTHHHHH
T ss_pred HHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHHhC----CHHHhCCCcCCCC----------CCCCccHHHH
Confidence 9999999999999999999999999999999999999999999 5799999999876 4568999999
Q ss_pred hhhcCCCccchhhhhhhhhhhHHHHHHHHHHHHHHHhhhhhccCCchhhhhhhcCCCCCchhhhccCcccccccccCCCc
Q psy9484 245 LCKHHDGCKLCVIVRAEASLSRDIVKHLNLTEEQVLDSLAWVSNSPLWKNIEDSGQEIPGCEQKLRGNIEDLSAILEPEN 324 (407)
Q Consensus 245 LC~~~~~~vie~~~~~E~~L~r~~~Khln~IEe~ile~l~w~~~s~l~~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~~~ 324 (407)
||+.|+|+++|++...+ +.|.++.++.. +.++.++
T Consensus 205 LC~~~~~~~~E~k~i~~----------------------------~~f~~~i~~l~------------l~~~~~~----- 239 (656)
T 4elj_A 205 LCKEHECNIDEVANVAF----------------------------KNFIPFMNSLG------------LVTSNGL----- 239 (656)
T ss_dssp HHHHTTCCHHHHHHHHH----------------------------HTHHHHHHTTG------------GGEETTE-----
T ss_pred HhhhcCCcHHHHHHHHH----------------------------Hhhhhhhcchh------------hhhcCCc-----
Confidence 99999999999999887 77777776542 5566777
Q ss_pred hhhhHHHHHHHHHHHhhccCCcccccccCCCCC---------CCCCCCCCCCC-CCCCCCCCCCCC
Q psy9484 325 FDYNFKVVNKMYEEYILSVGDFDERIFLPKFQS---------FDETAPGSSGP-GLDDLSPAPAPG 380 (407)
Q Consensus 325 l~~n~~~Lnk~Yee~~l~~Gd~DERiFL~~d~~---------e~~~tp~~~~~-~~~~~~~~~~~~ 380 (407)
.|.++|||+||+||+++|||||||||++|+. ..++||.|..+ +...++||+||.
T Consensus 240 --~n~k~Lnk~YEe~vl~~Gd~DERiFl~~d~~i~~~~~~~~~~~~tP~k~~~~~~~~~~p~~TPV 303 (656)
T 4elj_A 240 --PEVENLSKRYEEIYLKNKDLDARLFLDHDKTLQTDSIDSFETQRTPRKSNLDEEVNVIPPHTPV 303 (656)
T ss_dssp --ECHHHHHHHHHHHHHHHTCCCGGGGGGTCGGGCC-------------------------CCCHH
T ss_pred --ccHHHHHHHHHHHhcccCCcchhhhcCCccccccchhhhhccCCCCCccCCcccccCCCCCCch
Confidence 3899999999999999999999999998754 23468877664 555678888875
No 2
>2qdj_A Retinoblastoma-associated protein; cyclin fold, cyclin wedge, antitumor protein; 2.00A {Homo sapiens}
Probab=100.00 E-value=4.8e-72 Score=551.37 Aligned_cols=277 Identities=20% Similarity=0.322 Sum_probs=225.8
Q ss_pred HHHHHHHhhhcCCCHHHHHHHHHHHHHhhcc-----cCccccchhhhHHHHhhhhhccccCccCCCccccCCcccHHHHH
Q psy9484 10 AHQHQELCMALNIDSTTAKEAWNAYKEMSHH-----YTLEGSQLHWLGCSLYVSCRKATVPTVNSNRTIEGNLVCLTSLL 84 (407)
Q Consensus 10 ~~~f~~lC~~LnlD~~t~~~Aw~~~~~~~~~-----~tlEg~~~~W~aCaLY~a~r~~~~~tv~~~~~~~~n~vsLt~LL 84 (407)
++||+++|++||||++|+++||++|+++++. +++++++++|+|| ||+||. .++||||||||||
T Consensus 3 ~~rF~~lC~~Lnld~~~~~~Aw~~~~~~~~~~~~~~~~~~~~~~~w~ac-LY~a~~-----------~~~~n~vsLt~LL 70 (304)
T 2qdj_A 3 EPDFTALCQKLKIPDHVRERAWLTWEKVSSVDGVLGGYIQKKKELWGIC-IFIAAV-----------DLDEMSFTFTELQ 70 (304)
T ss_dssp CHHHHHHHHHTTCCHHHHHHHHHHHHHHHC----------CHHHHHHHH-HHHHHH-----------HHTCCCSCHHHHH
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHHHHhccccccCCCccchHHHHHHh-HHHHhh-----------ccCCCcCcHHHHH
Confidence 5799999999999999999999999999994 7889999999999 999983 3688999999999
Q ss_pred hhhCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhhHHHHHHHHhHHHHhccCCCCCCchhhhhhhcccccccccch
Q psy9484 85 KHCKMSLNQFLNKCRKWADMRKLPDSFRSKIARLERNFAVSKVIFTKYLPMFKEMFKPPDLDELLMHVRHNKKKMIHCTS 164 (407)
Q Consensus 85 r~~~lsi~~Ff~kl~kw~~~~~L~~e~~~~i~~Le~~f~v~~vLfkky~~iF~~iF~~p~~~~~~~~~r~~k~~~~~c~~ 164 (407)
|+++|||+|||++|+||. +|++++.++++||++|+|+++|||||+++|++||..|+.+. ++.+|++
T Consensus 71 r~~~lsi~~Ff~k~~~~d----~~~~~~~~i~~Le~~f~v~~~l~kky~~if~~iF~~~~~~~----------~~~~~~~ 136 (304)
T 2qdj_A 71 KNIEISVHKFFNLLKEID----TSTKVDNAMSRLLKKYDVLFALFSKLERTCELIYLTQPSSS----------ISTEINS 136 (304)
T ss_dssp HHHTCCHHHHHHHHTTSC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHBCCBCCCS----------SSCCBCS
T ss_pred HHcCCCHHHHHHHHHHcC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccc----------CCCCCCH
Confidence 999999999999999964 89999999999999999999999999999999999876221 1368999
Q ss_pred hhHHHHHHHHHHHHHhhccccccchhhhhhHHHHHHHHHHHhhhhcccccccCCCCCCCC-------C------CCCCCC
Q psy9484 165 TKVFEFTWILFVLTKAEYLDVSNDLVNSFHLLIATCDLIYANVIQSKLRDIVNPDFEGMP-------S------NFLDSH 231 (407)
Q Consensus 165 ~~lf~f~WlLFL~~K~~~~~~~~DLV~s~~LLlC~Ldlvi~n~~~~~~~~lln~~F~~~~-------~------~~~~~~ 231 (407)
+++|+|||+|||++|+++|++++|||+|||||+||||++|+|++ +++++++|++++ + +|..++
T Consensus 137 ~~l~~f~W~LFL~~K~~~~~~~~DLV~s~~LLlc~Ldliy~~~p----~~ll~~~~~~~~~~~~g~~~~~~~~q~~~~~~ 212 (304)
T 2qdj_A 137 ALVLKVSWITFLLAKGEVLQMEDDLVISFQLMLCVLDYFIKLSP----PMLLKEPYKTAVIPINGSPRTPRRGQNRSARI 212 (304)
T ss_dssp HHHHHHHHHHHHHHHHHCC---CCHHHHHHHHHHHHHHHHHTSC----GGGBCTTTTGGGC-------------------
T ss_pred HHHHHHHHHHHHHHhccCCCccccHHHHHHHHHHHHHHHHHhCC----HHHhCcccccccccccCCcccccccccccccc
Confidence 99999999999999999999999999999999999999999995 466776665544 4 677777
Q ss_pred CCCCCCCchHHHHhhhcCCCccchhhhhhhhhhhHHHHHHHHHHHHHHHhhhhhccCCchhhhhhhcCCCCCchhhhccC
Q psy9484 232 FAPLDDPPCIISILCKHHDGCKLCVIVRAEASLSRDIVKHLNLTEEQVLDSLAWVSNSPLWKNIEDSGQEIPGCEQKLRG 311 (407)
Q Consensus 232 f~~~~~~~~ILe~LC~~~~~~vie~~~~~E~~L~r~~~Khln~IEe~ile~l~w~~~s~l~~~~~~~~~~~p~~~~~~~g 311 (407)
+++++++++||++||+.|+++++|++...+ +.|.++..+.
T Consensus 213 ~~~~~~~~~il~~LC~~~~~~~~evk~~~~----------------------------~~f~~~l~~l------------ 252 (304)
T 2qdj_A 213 AKQLENDTRIIEVLCKEHECNIDEVKNVYF----------------------------KNFIPFMNSL------------ 252 (304)
T ss_dssp ------CTHHHHHHHHHHTCCHHHHHHHHH----------------------------HTHHHHTTCC------------
T ss_pred cccCCCcccHHHHHhhcCCCCHHHHHHHHH----------------------------HHHHHHHHHh------------
Confidence 777899999999999999999999999999 8888877655
Q ss_pred cccccccccCCCchhhhHHHHHHHHHHHhhccCCcccccccCCCCCCCCCCCCC
Q psy9484 312 NIEDLSAILEPENFDYNFKVVNKMYEEYILSVGDFDERIFLPKFQSFDETAPGS 365 (407)
Q Consensus 312 ~~~~~~~l~~~~~l~~n~~~Lnk~Yee~~l~~Gd~DERiFL~~d~~e~~~tp~~ 365 (407)
|+.....|+ |+++|||+||+||+++|||||||||++ .+.+++|+.
T Consensus 253 ------gL~~~~~l~-n~~~Lnk~Ye~~vl~~GdlDERiFl~~--d~~l~~~~~ 297 (304)
T 2qdj_A 253 ------GLVTSNGLP-EVENLSKRYEEIYLKNKDLDARLFLDH--DKTLQTDSI 297 (304)
T ss_dssp -------------CC-CHHHHHHHHHHHHHHHTSCCGGGGGGT--CGGGCCCHH
T ss_pred ------CCcccCCch-hHHHHHHHHHHHhcccCCCCcceecCC--ccccCCCcc
Confidence 223334466 999999999999999999999999987 455677754
No 3
>4ell_A Retinoblastoma-associated protein; cyclin fold, tumor suppressor, cell cycle; 1.98A {Homo sapiens}
Probab=99.62 E-value=5.7e-17 Score=165.05 Aligned_cols=101 Identities=23% Similarity=0.380 Sum_probs=74.3
Q ss_pred cchhhhhhHHHHHHHHHHHhhhhcccc-------cccCCCCCCCCCCCCCCCCCCCCCCchHHHHhhhcCCCccchhhhh
Q psy9484 187 NDLVNSFHLLIATCDLIYANVIQSKLR-------DIVNPDFEGMPSNFLDSHFAPLDDPPCIISILCKHHDGCKLCVIVR 259 (407)
Q Consensus 187 ~DLV~s~~LLlC~Ldlvi~n~~~~~~~-------~lln~~F~~~~~~~~~~~f~~~~~~~~ILe~LC~~~~~~vie~~~~ 259 (407)
+|.++. .||+||+|+|+... .+ ...+..|||+++.+++.+|+ + .+|||++++
T Consensus 103 ~~~Fh~-sLlACclEvVl~~y----~~~~~~~~~~~~~~~FPwiL~~~~i~afd----f------------~KVIE~fvr 161 (411)
T 4ell_A 103 DNIFHM-SLLACALEVVMATY----SRSTSQNLDSGTDLSFPWILNVLNLKAFD----F------------YKVIESFIK 161 (411)
T ss_dssp CHHHHH-HHHHHHHHHHHHHT----C------------CCTTHHHHHTTCCHHH----H------------HHHHHHHHH
T ss_pred hHHHHH-HHHHHHHHHHHHHh----ccccccccccccCcCChHHHHhcCCChhh----h------------hhhhHHhhh
Confidence 444444 59999999999943 32 23456788888888888776 4 477899999
Q ss_pred hhhhhhHHHHHHHHHHHHHHHhhhhhccCCchhhhhhhcCCCCCchhhh
Q psy9484 260 AEASLSRDIVKHLNLTEEQVLDSLAWVSNSPLWKNIEDSGQEIPGCEQK 308 (407)
Q Consensus 260 ~E~~L~r~~~Khln~IEe~ile~l~w~~~s~l~~~~~~~~~~~p~~~~~ 308 (407)
+|++|+|+|+||||.|||+|||++||+++|++|+.+..+....|.|.++
T Consensus 162 ~e~~L~r~lvkHL~~iEe~iLEslaW~~~S~Lw~~l~~~~~~~~~~~~~ 210 (411)
T 4ell_A 162 AEGNLTREMIKHLERCEHRIMESFAWLSDSPLFDLIKQSKDREGPTDHL 210 (411)
T ss_dssp HCTTCCHHHHHHHHHHHHHHHHTGGGSTTCHHHHHHHHC----------
T ss_pred ccCCCCHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHhccccCCccccc
Confidence 9999999999999999999999999999999999999876656666543
No 4
>2r7g_A PP110, retinoblastoma-associated protein, P105-RB, RB; retinoblastoma protein, E2F displacement, transcription repressor; 1.67A {Homo sapiens} SCOP: a.74.1.3 a.74.1.3 PDB: 1n4m_A 3pom_A 1gh6_B 1gux_A 1o9k_A 1ad6_A 1gux_B 1o9k_B
Probab=99.49 E-value=2.4e-15 Score=150.35 Aligned_cols=90 Identities=27% Similarity=0.410 Sum_probs=73.1
Q ss_pred hHHHHHHHHHHHhhhhc--cc-ccccCCCCCCCCCCCCCCCCCCCCCCchHHHHhhhcCCCccchhhhhhhhhhhHHHHH
Q psy9484 194 HLLIATCDLIYANVIQS--KL-RDIVNPDFEGMPSNFLDSHFAPLDDPPCIISILCKHHDGCKLCVIVRAEASLSRDIVK 270 (407)
Q Consensus 194 ~LLlC~Ldlvi~n~~~~--~~-~~lln~~F~~~~~~~~~~~f~~~~~~~~ILe~LC~~~~~~vie~~~~~E~~L~r~~~K 270 (407)
.||+||+|+|+...-.+ .+ +...+..|||+++.+++++|+ + .+|||+++++|+.|+|+|+|
T Consensus 106 sLlACc~EiVl~ay~~~~~~~~~~~~~~~FP~il~~~~i~afd----f------------~KVIE~fVr~e~~Lprelvk 169 (347)
T 2r7g_A 106 SLLACALEVVMATYSRSTSQNLDSGTDLSFPWILNVLNLKAFD----F------------YKVIESFIKAEGNLTREMIK 169 (347)
T ss_dssp HHHHHHHHHHHHHHHHHC------CCCCCTTHHHHHHTCCHHH----H------------HHHHHHHHHHCTTCCHHHHH
T ss_pred HHHHHHHHHHHHHhcccccccccccccCCCcHHHHhcCCChHH----H------------HHHHHHHHhccccCCHHHHH
Confidence 59999999999843210 00 233457899999999988887 4 46788888899999999999
Q ss_pred HHHHHHHHHHhhhhhccCCchhhhhhhcC
Q psy9484 271 HLNLTEEQVLDSLAWVSNSPLWKNIEDSG 299 (407)
Q Consensus 271 hln~IEe~ile~l~w~~~s~l~~~~~~~~ 299 (407)
|||.|||+|||++||+++|++|+.+..+.
T Consensus 170 HL~~iEe~iLeslaW~~~S~L~~~l~~~~ 198 (347)
T 2r7g_A 170 HLERCEHRIMESLAWLSDSPLFDLIKQSK 198 (347)
T ss_dssp HHHHHHHHHHHTGGGSTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCHHHHHHHhcc
Confidence 99999999999999999999999888653
No 5
>4elj_A Retinoblastoma-associated protein; cyclin fold, tumor suppressor protein, phosphorylation, cell; HET: TPO; 2.70A {Homo sapiens}
Probab=99.43 E-value=1.8e-14 Score=153.83 Aligned_cols=89 Identities=28% Similarity=0.440 Sum_probs=72.2
Q ss_pred hHHHHHHHHHHHhhhhcc---cccccCCCCCCCCCCCCCCCCCCCCCCchHHHHhhhcCCCccchhhhhhhhhhhHHHHH
Q psy9484 194 HLLIATCDLIYANVIQSK---LRDIVNPDFEGMPSNFLDSHFAPLDDPPCIISILCKHHDGCKLCVIVRAEASLSRDIVK 270 (407)
Q Consensus 194 ~LLlC~Ldlvi~n~~~~~---~~~lln~~F~~~~~~~~~~~f~~~~~~~~ILe~LC~~~~~~vie~~~~~E~~L~r~~~K 270 (407)
.||+||+|+|+...-.+. -+...+..|||+++.+++++|+ + .+|||+++++|++|+|+|+|
T Consensus 413 sLlACclEvVl~~y~~~~~~~~~~~~~~~FPwiL~~~~i~afd----f------------~KVIE~fvr~e~~L~r~lvk 476 (656)
T 4elj_A 413 SLLACALEVVMATYSRSTSQNLDSGTDLSFPWILNVLNLKAFD----F------------YKVIESFIKAEGNLTREMIK 476 (656)
T ss_dssp HHHHHHHHHHHHHHSCCCC----CCCSSSTTHHHHHTTCCHHH----H------------HHHHHHHHHHCTTCCHHHHH
T ss_pred HHHHHHHHHHHHHhccccccccccccccCCcHHHHhcCCcHHH----H------------HhhhhhheeccCCCCHHHHH
Confidence 599999999999441100 0123456788888888888776 4 47789999999999999999
Q ss_pred HHHHHHHHHHhhhhhccCCchhhhhhhc
Q psy9484 271 HLNLTEEQVLDSLAWVSNSPLWKNIEDS 298 (407)
Q Consensus 271 hln~IEe~ile~l~w~~~s~l~~~~~~~ 298 (407)
|||.|||+|||++||+++|++|+.+.++
T Consensus 477 HL~~iEe~iLEslaW~~~S~L~~~l~~~ 504 (656)
T 4elj_A 477 HLERCEHRIMESLAWLSDSPLFDLIKQS 504 (656)
T ss_dssp HHHHHHHHHHHTGGGSSSCTHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHhc
Confidence 9999999999999999999999998864
No 6
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=96.01 E-value=0.027 Score=56.05 Aligned_cols=87 Identities=17% Similarity=0.204 Sum_probs=67.5
Q ss_pred HHHHHHHHHhhhcCCCHHHHHHHHHHHHHhhcccCc-cccchhhhHHHHhhhhhccccCccCCCccccCCcccHHHHHhh
Q psy9484 8 ETAHQHQELCMALNIDSTTAKEAWNAYKEMSHHYTL-EGSQLHWLGCSLYVSCRKATVPTVNSNRTIEGNLVCLTSLLKH 86 (407)
Q Consensus 8 ~~~~~f~~lC~~LnlD~~t~~~Aw~~~~~~~~~~tl-Eg~~~~W~aCaLY~a~r~~~~~tv~~~~~~~~n~vsLt~LLr~ 86 (407)
.......++|..|+|++.+.+.|..+|+.......+ ........|++||+|||+.. .+.||-+|...
T Consensus 128 ~a~~~I~~~~~~L~Lp~~v~d~A~~lyk~a~~~~~~rGrs~e~vaAAclYiACR~~~------------~prtl~eI~~~ 195 (345)
T 4bbr_M 128 AAFAKITMLCDAAELPKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAE------------VARTFKEIQSL 195 (345)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHHHHHHTC------------CBCCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccCCCHHHHHHHHHHHHHHhcC------------CCccHHHHHHH
Confidence 455667788999999999999999999999754444 44577889999999999973 34688889888
Q ss_pred hCCChHHHHHHHHHHHHhcC
Q psy9484 87 CKMSLNQFLNKCRKWADMRK 106 (407)
Q Consensus 87 ~~lsi~~Ff~kl~kw~~~~~ 106 (407)
++++..++-+-.++.....+
T Consensus 196 ~~v~~keigr~~k~l~~~L~ 215 (345)
T 4bbr_M 196 IHVKTKEFGKTLNIMKNILR 215 (345)
T ss_dssp HTCCTTHHHHHHHHHHHCC-
T ss_pred hCCCHHHHHHHHHHHHHHhC
Confidence 99988776665555554444
No 7
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=95.37 E-value=0.073 Score=47.96 Aligned_cols=82 Identities=10% Similarity=0.097 Sum_probs=61.8
Q ss_pred HHHHhhhcCCCHHHHHHHHHHHHHhhcccCc-cccchhhhHHHHhhhhhccccCccCCCccccCCcccHHHHHhhhCCCh
Q psy9484 13 HQELCMALNIDSTTAKEAWNAYKEMSHHYTL-EGSQLHWLGCSLYVSCRKATVPTVNSNRTIEGNLVCLTSLLKHCKMSL 91 (407)
Q Consensus 13 f~~lC~~LnlD~~t~~~Aw~~~~~~~~~~tl-Eg~~~~W~aCaLY~a~r~~~~~tv~~~~~~~~n~vsLt~LLr~~~lsi 91 (407)
...+|+.|++++.+.+.||.+++.+....-. .-....-.|.++|.||+..+ ...|+.+|-+.++++-
T Consensus 112 i~r~~~~L~l~~~v~~~A~~i~~~~~~~~~~~gr~P~~iAaAaly~A~~~~~------------~~~t~~ei~~~~~vs~ 179 (200)
T 1ais_B 112 VNKFADELGLSEKVRRRAIEILDEAYKRGLTSGKSPAGLVAAALYIASLLEG------------EKRTQREVAEVARVTE 179 (200)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHHHTTCCTTSCHHHHHHHHHHHHHHHTT------------CCCCHHHHHHHHTCCH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHhC------------CCCCHHHHHHHhCCCH
Confidence 3457889999999999999999999976544 45566778889999988752 3357888888888887
Q ss_pred HHHHHHHHHHHHhcC
Q psy9484 92 NQFLNKCRKWADMRK 106 (407)
Q Consensus 92 ~~Ff~kl~kw~~~~~ 106 (407)
.+--+..+.+....+
T Consensus 180 ~ti~~~~~~l~~~l~ 194 (200)
T 1ais_B 180 VTVRNRYKELVEKLK 194 (200)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcC
Confidence 666666555555443
No 8
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=95.15 E-value=0.15 Score=45.81 Aligned_cols=76 Identities=13% Similarity=0.192 Sum_probs=58.7
Q ss_pred HHHHHHHHhhhcCCCHHHHHHHHHHHHHhhcccCcc-ccchhhhHHHHhhhhhccccCccCCCccccCCcccHHHHHhhh
Q psy9484 9 TAHQHQELCMALNIDSTTAKEAWNAYKEMSHHYTLE-GSQLHWLGCSLYVSCRKATVPTVNSNRTIEGNLVCLTSLLKHC 87 (407)
Q Consensus 9 ~~~~f~~lC~~LnlD~~t~~~Aw~~~~~~~~~~tlE-g~~~~W~aCaLY~a~r~~~~~tv~~~~~~~~n~vsLt~LLr~~ 87 (407)
....-.++|..|+|.+.+.+.|..+|+.......+. .+...-.+.++|.|||... .+.++-++...+
T Consensus 12 a~~~I~~~~~~L~L~~~v~~~A~~l~~~~~~~~~~~gr~~~~vaaAclylAcr~~~------------~p~~l~di~~~~ 79 (200)
T 1ais_B 12 ALSELDRITAQLKLPRHVEEEAARLYREAVRKGLIRGRSIESVMAACVYAACRLLK------------VPRTLDEIADIA 79 (200)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTTTTTTCCHHHHHHHHHHHHHHHHT------------CCCCHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHHHcC------------CCCCHHHHHHHH
Confidence 444556788999999999999999999998655554 4567788899999998863 345788888888
Q ss_pred CCChHHHHH
Q psy9484 88 KMSLNQFLN 96 (407)
Q Consensus 88 ~lsi~~Ff~ 96 (407)
+++..+.-+
T Consensus 80 ~v~~~~i~~ 88 (200)
T 1ais_B 80 RVDKKEIGR 88 (200)
T ss_dssp TSCHHHHHH
T ss_pred CCCHHHHHH
Confidence 877655443
No 9
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=95.03 E-value=0.016 Score=57.39 Aligned_cols=74 Identities=23% Similarity=0.322 Sum_probs=58.4
Q ss_pred HHHHHHHHhhhcCCCHHHHHHHHHHHHHhhcccCccc-cchhhhHHHHhhhhhccccCccCCCccccCCcccHHHHHhhh
Q psy9484 9 TAHQHQELCMALNIDSTTAKEAWNAYKEMSHHYTLEG-SQLHWLGCSLYVSCRKATVPTVNSNRTIEGNLVCLTSLLKHC 87 (407)
Q Consensus 9 ~~~~f~~lC~~LnlD~~t~~~Aw~~~~~~~~~~tlEg-~~~~W~aCaLY~a~r~~~~~tv~~~~~~~~n~vsLt~LLr~~ 87 (407)
.......+|..|+|.+.+.+.|..+|+.....-.+.| ....-.|++||.|||+... +.+|-+|...+
T Consensus 129 a~~~I~~~~~~L~Lp~~v~d~A~~lyk~~~~~~~~kgr~~~~vaaAclyiAcR~e~~------------prtl~ei~~~~ 196 (345)
T 3k7a_M 129 AFAKITMLCDAAELPKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAEV------------ARTFKEIQSLI 196 (345)
T ss_dssp HHHHHHHHHHHTTCCHHHHTHHHHHHHHHSSSCSSCCCCSHHHHTTTTTTTSBTTBS------------SCCHHHHHHSS
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcccCCcHHHHHHHHHHHHHHHcCC------------CccHHHHHHHH
Confidence 4456677899999999999999999999986555544 5778889999999998643 35777777777
Q ss_pred CCChHHH
Q psy9484 88 KMSLNQF 94 (407)
Q Consensus 88 ~lsi~~F 94 (407)
+++..++
T Consensus 197 ~v~~keI 203 (345)
T 3k7a_M 197 HVKTKEF 203 (345)
T ss_dssp SCCSHHH
T ss_pred CCCHHHH
Confidence 7777665
No 10
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=94.91 E-value=0.11 Score=47.18 Aligned_cols=58 Identities=17% Similarity=0.343 Sum_probs=46.7
Q ss_pred HHHHHHHHHhhhcCCCHHHHHHHHHHHHHhhcccCc-cccchhhhHHHHhhhhhccccC
Q psy9484 8 ETAHQHQELCMALNIDSTTAKEAWNAYKEMSHHYTL-EGSQLHWLGCSLYVSCRKATVP 65 (407)
Q Consensus 8 ~~~~~f~~lC~~LnlD~~t~~~Aw~~~~~~~~~~tl-Eg~~~~W~aCaLY~a~r~~~~~ 65 (407)
.....-.++|..|+|.+.|.+.|..+|+.......+ +.+...-.+.++|.|||....|
T Consensus 7 ~a~~~I~~~~~~L~L~~~v~~~A~~~~~r~~~~~~~~~~~~~~v~aaclylAcK~ee~p 65 (207)
T 1c9b_A 7 NAFKEITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVP 65 (207)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTCSTTSCHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcCCCCHHHHHHHHHHHHHHhcCCC
Confidence 345566788999999999999999999999865555 4456778999999999886443
No 11
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=90.74 E-value=1.1 Score=40.48 Aligned_cols=72 Identities=7% Similarity=0.050 Sum_probs=53.3
Q ss_pred HHHHHHhhhcCCCHHHHHHHHHHHHHhhccc-CccccchhhhHHHHhhhhhccccCccCCCccccCCcccHHHHHhhhCC
Q psy9484 11 HQHQELCMALNIDSTTAKEAWNAYKEMSHHY-TLEGSQLHWLGCSLYVSCRKATVPTVNSNRTIEGNLVCLTSLLKHCKM 89 (407)
Q Consensus 11 ~~f~~lC~~LnlD~~t~~~Aw~~~~~~~~~~-tlEg~~~~W~aCaLY~a~r~~~~~tv~~~~~~~~n~vsLt~LLr~~~l 89 (407)
.-...+|+.|++++.+.+.||.+++.+.... .+.-....-.|.++|.|++... ...++.++-+.+++
T Consensus 104 ~~l~r~~~~l~l~~~~~~~A~~i~~~~~~~~l~~g~~P~~IAaAaiylA~~~~~------------~~~~~~~i~~~~~v 171 (207)
T 1c9b_A 104 DFMSRFCSNLCLPKQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQASA------------EKRTQKEIGDIAGV 171 (207)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTCSTTCCHHHHHHHHHHHHHHTSS------------SCCCHHHHHHHHTC
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCccCCCChHHHHHHHHHHHHHHHC------------CCCCHHHHHHHhCC
Confidence 3345678999999999999999999998654 3455566777888999987752 33467777777777
Q ss_pred ChHHH
Q psy9484 90 SLNQF 94 (407)
Q Consensus 90 si~~F 94 (407)
+-.+-
T Consensus 172 ~~~tI 176 (207)
T 1c9b_A 172 ADVTI 176 (207)
T ss_dssp CHHHH
T ss_pred CHHHH
Confidence 65443
No 12
>2r7g_A PP110, retinoblastoma-associated protein, P105-RB, RB; retinoblastoma protein, E2F displacement, transcription repressor; 1.67A {Homo sapiens} SCOP: a.74.1.3 a.74.1.3 PDB: 1n4m_A 3pom_A 1gh6_B 1gux_A 1o9k_A 1ad6_A 1gux_B 1o9k_B
Probab=90.29 E-value=0.35 Score=48.22 Aligned_cols=68 Identities=16% Similarity=0.317 Sum_probs=50.7
Q ss_pred HHHHHHHHhhhcCCCH-HHHHHHHHHHHHhhcc-cCc--cccchhhhHHHHhhhhhccccCccCCCccccCCcccHHHHH
Q psy9484 9 TAHQHQELCMALNIDS-TTAKEAWNAYKEMSHH-YTL--EGSQLHWLGCSLYVSCRKATVPTVNSNRTIEGNLVCLTSLL 84 (407)
Q Consensus 9 ~~~~f~~lC~~LnlD~-~t~~~Aw~~~~~~~~~-~tl--Eg~~~~W~aCaLY~a~r~~~~~tv~~~~~~~~n~vsLt~LL 84 (407)
...|..+||+.|++++ +..+..|.+|+.+-.+ ..| +.--.+++.|++|++|+.++ ..+|+++|+
T Consensus 218 a~~Rl~~LC~~L~~~~~~~~~~iWt~fe~~l~~~t~L~~dRHLDQiilCaiY~i~Kv~~------------~~~tF~~Ii 285 (347)
T 2r7g_A 218 AYLRLNTLCERLLSEHPELEHIIWTLFQHTLQNEYELMRDRHLDQIMMCSMYGICKVKN------------IDLKFKIIV 285 (347)
T ss_dssp HHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHHTT------------CCCCHHHHH
T ss_pred HHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhChHhhcCCcHHHHHHHHHHHHHHhcC------------CCCCHHHHH
Confidence 4568999999998775 6888999999998743 233 34456899999999998762 235777777
Q ss_pred hhhC
Q psy9484 85 KHCK 88 (407)
Q Consensus 85 r~~~ 88 (407)
++-+
T Consensus 286 ~~Yr 289 (347)
T 2r7g_A 286 TAYK 289 (347)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 6543
No 13
>4ell_A Retinoblastoma-associated protein; cyclin fold, tumor suppressor, cell cycle; 1.98A {Homo sapiens}
Probab=89.34 E-value=0.41 Score=48.82 Aligned_cols=54 Identities=19% Similarity=0.401 Sum_probs=43.1
Q ss_pred HHHHHHHHhhhcCCCH-HHHHHHHHHHHHhhcc-cCc--cccchhhhHHHHhhhhhcc
Q psy9484 9 TAHQHQELCMALNIDS-TTAKEAWNAYKEMSHH-YTL--EGSQLHWLGCSLYVSCRKA 62 (407)
Q Consensus 9 ~~~~f~~lC~~LnlD~-~t~~~Aw~~~~~~~~~-~tl--Eg~~~~W~aCaLY~a~r~~ 62 (407)
...|..+||+.|++++ +..+.-|.+|+.+-.+ ..| +.--.+++.|++|++|+-+
T Consensus 282 Aa~Rl~~LC~~L~~~~~~l~~~IWt~fe~~l~~~teLm~dRHLDQiiLCsiY~i~Kv~ 339 (411)
T 4ell_A 282 AYLRLNTLCERLLSEHPELEHIIWTLFQHTLQNEYELMRDRHLDQIMMCSMYGICKVK 339 (411)
T ss_dssp HHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhhhHhhccccHHHHHHHHHHHHHhhc
Confidence 4578999999998764 7889999999998743 333 3446689999999999765
No 14
>3m03_A ORC6, origin recognition complex subunit 6; helix turn helix, DNA binding protein, origin recognition CO DNA replication; HET: MES; 2.50A {Homo sapiens}
Probab=86.63 E-value=2.5 Score=34.58 Aligned_cols=79 Identities=13% Similarity=0.204 Sum_probs=59.5
Q ss_pred HHHhhhcCCCHHHHHHHHHHHHHhhccc------CccccchhhhHHHHhhhhhccccCccCCCccccCCcccHHHHHhhh
Q psy9484 14 QELCMALNIDSTTAKEAWNAYKEMSHHY------TLEGSQLHWLGCSLYVSCRKATVPTVNSNRTIEGNLVCLTSLLKHC 87 (407)
Q Consensus 14 ~~lC~~LnlD~~t~~~Aw~~~~~~~~~~------tlEg~~~~W~aCaLY~a~r~~~~~tv~~~~~~~~n~vsLt~LLr~~ 87 (407)
+++|-.++..+ +...|=++.+..+... .++-+.=...|-|+|.+||+.+. .|+=++|+..+
T Consensus 7 ~dLcVqfgc~e-~~~~a~~lL~~Yk~~l~~~~~~~~D~s~P~f~aaA~~~acr~~K~------------kVdK~KL~~~s 73 (95)
T 3m03_A 7 RDLAVQFSCIE-AVNMASKILKSYESSLPQTQQVDLDLSRPLFTSAALLSACKILKL------------KVDKNKMVATS 73 (95)
T ss_dssp HHHHHHHTCGG-GHHHHHHHHHHHHTTSCHHHHHHCCTTSHHHHHHHHHHHHHHTTC------------CCCHHHHHHTT
T ss_pred HHHHHHhCCHH-HHHHHHHHHHHHHHHhHHHhhccccccccHHHHHHHHHHHHHHcc------------CCCHHHHHHHH
Confidence 68999999875 4444445544444322 44566778899999999998743 35678999999
Q ss_pred CCChHHHHHHHHHHHHhc
Q psy9484 88 KMSLNQFLNKCRKWADMR 105 (407)
Q Consensus 88 ~lsi~~Ff~kl~kw~~~~ 105 (407)
+++-.||=....+|-.+.
T Consensus 74 ~lk~~~f~~l~~~~e~~~ 91 (95)
T 3m03_A 74 GVKKAIFDRLCKQLEKIG 91 (95)
T ss_dssp CBCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 999999999999998764
No 15
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=64.45 E-value=1.4 Score=43.61 Aligned_cols=67 Identities=10% Similarity=0.070 Sum_probs=0.0
Q ss_pred HHHHhhhcCCCHHHHHHHHHHHHHhhcccCcc-ccchhhhHHHHhhhhhccccCccCCCccccCCcccHHHHHhhhCCCh
Q psy9484 13 HQELCMALNIDSTTAKEAWNAYKEMSHHYTLE-GSQLHWLGCSLYVSCRKATVPTVNSNRTIEGNLVCLTSLLKHCKMSL 91 (407)
Q Consensus 13 f~~lC~~LnlD~~t~~~Aw~~~~~~~~~~tlE-g~~~~W~aCaLY~a~r~~~~~tv~~~~~~~~n~vsLt~LLr~~~lsi 91 (407)
...+|+.|++++.+...||++.+.+....-.. ....-..|.+||.|++... ..+|..+|-+.++++-
T Consensus 239 i~Rf~s~L~l~~~v~~~A~~i~~~~~~~~i~~GR~P~~IAAAaIylAa~l~g------------~~~t~~eIa~v~~Vse 306 (345)
T 4bbr_M 239 IPRFCSHLGLPMQVTTSAEYTAKKCKEIKEIAGKSPITIAVVSIYLNILLFQ------------IPITAAKVGQTLQVTE 306 (345)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHcCCcHHHHHHHHHHHHHHHhcccccCCChHHHHHHHHHHHHHHhC------------CCCCHHHHHHHHCCCH
Confidence 34578999999999999999999999865443 4577778888999976642 2345555555555543
No 16
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=56.50 E-value=36 Score=30.94 Aligned_cols=52 Identities=15% Similarity=0.143 Sum_probs=42.3
Q ss_pred HHHHHHhhhcCCCHHHHHHHHHHHHHhhcccCccc--cchhhhHHHHhhhhhcc
Q psy9484 11 HQHQELCMALNIDSTTAKEAWNAYKEMSHHYTLEG--SQLHWLGCSLYVSCRKA 62 (407)
Q Consensus 11 ~~f~~lC~~LnlD~~t~~~Aw~~~~~~~~~~tlEg--~~~~W~aCaLY~a~r~~ 62 (407)
.-..++|..|++.+.|...|..+|.+.-...++.+ +...-++.+||.||+..
T Consensus 33 ~~i~~v~~~l~L~~~t~~~A~~~~~Rf~~~~~~~~~~~~~lv~~acL~lA~K~E 86 (235)
T 1zp2_A 33 KVVQTFGDRLRLRQRVLATAIVLLRRYMLKKNEEKGFSLEALVATCIYLSCKVE 86 (235)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCSCCCCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcccccccCHHHHHHHHHHHHhccc
Confidence 44567889999999999999999999876666654 56667888999998664
No 17
>1u5t_A Appears to BE functionally related to SNF7; SNF8P; ESCRT, endosomal, trafficking, protein complex, transport protein; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54 PDB: 1w7p_A
Probab=56.49 E-value=17 Score=34.22 Aligned_cols=84 Identities=15% Similarity=0.313 Sum_probs=52.0
Q ss_pred cchHHHHHHHHHhhhcCCCHHH-HHHHHHHHHHhhcccCccccchhhhHHHHhhhhhccccCccCCCccccCCcccHHHH
Q psy9484 5 ADNETAHQHQELCMALNIDSTT-AKEAWNAYKEMSHHYTLEGSQLHWLGCSLYVSCRKATVPTVNSNRTIEGNLVCLTSL 83 (407)
Q Consensus 5 ~~~~~~~~f~~lC~~LnlD~~t-~~~Aw~~~~~~~~~~tlEg~~~~W~aCaLY~a~r~~~~~tv~~~~~~~~n~vsLt~L 83 (407)
.+.+.+.+|...|.++++|+=+ .... ++.+.. |+=-+=+|-=+..+|+.. ...+|.-++|++|
T Consensus 56 ~dp~fR~~F~~mc~siGVDPLa~s~kg-------~~~lg~-gdfy~eLavqIvEvC~~t--------r~~nGGli~l~el 119 (233)
T 1u5t_A 56 ASPEFRSKFMHMCSSIGIDPLSLFDRD-------KHLFTV-NDFYYEVCLKVIEICRQT--------KDMNGGVISFQEL 119 (233)
T ss_dssp TCHHHHHHHHHHHHHHTCCHHHHTTSS-------GGGTTH-HHHHHHHHHHHHHHHHHH--------TTTSSSCEEHHHH
T ss_pred cCHHHHHHHHHHHHHcCCCCCccCCcc-------ccccCc-chHHHHHHHHHHHHHHHH--------HHhcCCeeEHHHH
Confidence 4567899999999999999666 2211 111121 222222444455666554 3445666899998
Q ss_pred Hhhh----CCChHHHHHHHHHHHHh
Q psy9484 84 LKHC----KMSLNQFLNKCRKWADM 104 (407)
Q Consensus 84 Lr~~----~lsi~~Ff~kl~kw~~~ 104 (407)
.... .||-.|-++-++++-..
T Consensus 120 ~~~~~r~~~IS~dDi~rAik~L~~L 144 (233)
T 1u5t_A 120 EKVHFRKLNVGLDDLEKSIDMLKSL 144 (233)
T ss_dssp HHTTTTTTTCCHHHHHHHHHHHTTT
T ss_pred HHHHHhhcCCCHHHHHHHHHHhhhc
Confidence 8877 46766666666666544
No 18
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=41.80 E-value=5.4 Score=39.12 Aligned_cols=49 Identities=16% Similarity=0.190 Sum_probs=0.0
Q ss_pred HHHhhhcCCCHHHHHHHHHHHHHhhcccCccc-cchhhhHHHHhhhhhcc
Q psy9484 14 QELCMALNIDSTTAKEAWNAYKEMSHHYTLEG-SQLHWLGCSLYVSCRKA 62 (407)
Q Consensus 14 ~~lC~~LnlD~~t~~~Aw~~~~~~~~~~tlEg-~~~~W~aCaLY~a~r~~ 62 (407)
..+|+.|+++..+...||++.+.+....-..| ....-.|.++|.|++..
T Consensus 240 ~Rf~~~L~l~~~v~~~A~~i~~~~~~~~l~~Gr~P~~IAaAaIylAa~~~ 289 (345)
T 3k7a_M 240 PRFCSHLGLPMQVTTSAEYTAKKCKEIKEIAGKSPITIAVVSIYLNILLF 289 (345)
T ss_dssp --------------------------------------------------
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHhchhcCCCHHHHHHHHHHHHHHHH
Confidence 35688999999999999999999987654433 45555667889887664
No 19
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=40.90 E-value=48 Score=30.31 Aligned_cols=63 Identities=8% Similarity=0.075 Sum_probs=46.3
Q ss_pred HHHHhhhcCCCHHHHHHHHHHHHHhhcccCccccc-hhhhHHHHhhhhhccccCccCCCccccCCcccHHHHHhhh
Q psy9484 13 HQELCMALNIDSTTAKEAWNAYKEMSHHYTLEGSQ-LHWLGCSLYVSCRKATVPTVNSNRTIEGNLVCLTSLLKHC 87 (407)
Q Consensus 13 f~~lC~~LnlD~~t~~~Aw~~~~~~~~~~tlEg~~-~~W~aCaLY~a~r~~~~~tv~~~~~~~~n~vsLt~LLr~~ 87 (407)
..++|..|++.+.|...|..+|.+.-...++.+.. ..-++++||.||+.. +...++.++.+.+
T Consensus 48 i~~v~~~l~l~~~t~~~A~~~~dRf~~~~~~~~~~~qlv~~acL~lA~K~e------------E~~~~l~d~~~~~ 111 (258)
T 2i53_A 48 IFDVGTRLGLHYDTLATGIIYFHRFYMFHSFKQFPRYVTGACCLFLAGKVE------------ETPKKCKDIIKTA 111 (258)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHT------------TCCCCHHHHHHHH
T ss_pred HHHHHHHcCCChHHHHHHHHHHHHHHHhCChhhcCHHHHHHHHHHHHHccc------------cccccHHHHHHHH
Confidence 45678889999999999999999987665665444 445678899997654 2345666666544
No 20
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=38.39 E-value=1.2e+02 Score=27.66 Aligned_cols=50 Identities=16% Similarity=0.143 Sum_probs=40.0
Q ss_pred HHHHhhhcCCCHHHHHHHHHHHHHhhcccCcc-ccchhhhHHHHhhhhhcc
Q psy9484 13 HQELCMALNIDSTTAKEAWNAYKEMSHHYTLE-GSQLHWLGCSLYVSCRKA 62 (407)
Q Consensus 13 f~~lC~~LnlD~~t~~~Aw~~~~~~~~~~tlE-g~~~~W~aCaLY~a~r~~ 62 (407)
..++|..|++.+.|...|..+|.+.-...++. .+-..-++++||.||+..
T Consensus 38 i~~v~~~l~l~~~t~~~A~~~~dRf~~~~~~~~~~~qlv~~acL~lA~K~E 88 (257)
T 2ivx_A 38 IQEMGQRLNVSQLTINTAIVYMHRFYMHHSFTKFNKNIISSTALFLAAKVE 88 (257)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCcHHHHHHHHHHHHHHHhhCChhhhCHHHHHHHHHHHHhccc
Confidence 45778899999999999999999988665554 445566788999997654
No 21
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Probab=35.71 E-value=60 Score=31.27 Aligned_cols=63 Identities=10% Similarity=0.136 Sum_probs=48.0
Q ss_pred HHHHhhhcC--CCHHHHHHHHHHHHHhhcccCcc-ccchhhhHHHHhhhhhccccCccCCCccccCCcccHHHHHhhh
Q psy9484 13 HQELCMALN--IDSTTAKEAWNAYKEMSHHYTLE-GSQLHWLGCSLYVSCRKATVPTVNSNRTIEGNLVCLTSLLKHC 87 (407)
Q Consensus 13 f~~lC~~Ln--lD~~t~~~Aw~~~~~~~~~~tlE-g~~~~W~aCaLY~a~r~~~~~tv~~~~~~~~n~vsLt~LLr~~ 87 (407)
-.++|..|+ +.+.|...|..+|.+.-...++. .+...-++++||.||+.. +..+++.++...+
T Consensus 64 I~ev~~~l~~~Lp~~t~~tA~~~~~RF~~~~s~~~~~~~lva~acLfLA~K~E------------E~~~~l~d~v~~~ 129 (323)
T 1jkw_A 64 LLEFCSVFKPAMPRSVVGTACMYFKRFYLNNSVMEYHPRIIMLTCAFLACKVD------------EFNVSSPQFVGNL 129 (323)
T ss_dssp HHHHHHHCTTTCCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHHHT------------TCCCCHHHHGGGS
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHhhhCChhhcCHHHHHHHHHHHHHhhh------------cCCCCHHHHHHHh
Confidence 467899999 99999999999999998766664 445667888999997654 3345676666544
No 22
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=32.78 E-value=1.3e+02 Score=27.77 Aligned_cols=50 Identities=4% Similarity=0.001 Sum_probs=39.6
Q ss_pred HHHHhhhcCCCHHHHHHHHHHHHHhhcccCcccc-chhhhHHHHhhhhhcc
Q psy9484 13 HQELCMALNIDSTTAKEAWNAYKEMSHHYTLEGS-QLHWLGCSLYVSCRKA 62 (407)
Q Consensus 13 f~~lC~~LnlD~~t~~~Aw~~~~~~~~~~tlEg~-~~~W~aCaLY~a~r~~ 62 (407)
..+.|..+++...|..-|..++.+.-...++.+. -..-++.++|.||+..
T Consensus 45 l~~v~~~~~l~~~tl~lAv~~lDRfl~~~~v~~~~lqlv~~acL~iA~K~e 95 (269)
T 2b9r_A 45 LVQVQMKFRLLQETMYMTVSIIDRFMQNNSVPKKMLQLVGVTAMFIASKYE 95 (269)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHTTSCCCGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCcHHHhhHHHHHHHHHHHhcc
Confidence 3457888999999999999999999876666544 4456777899998774
No 23
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=30.95 E-value=56 Score=30.77 Aligned_cols=50 Identities=14% Similarity=0.205 Sum_probs=40.3
Q ss_pred HHHHhhhcCCCHHHHHHHHHHHHHhhcccCccc-cchhhhHHHHhhhhhcc
Q psy9484 13 HQELCMALNIDSTTAKEAWNAYKEMSHHYTLEG-SQLHWLGCSLYVSCRKA 62 (407)
Q Consensus 13 f~~lC~~LnlD~~t~~~Aw~~~~~~~~~~tlEg-~~~~W~aCaLY~a~r~~ 62 (407)
..++|..|++.+.|...|..+|.+.-...++.+ +...-++.+||.||+..
T Consensus 50 I~~v~~~l~L~~~t~~tA~~~~~RF~~~~s~~~~~~~lva~acLfLA~K~E 100 (285)
T 3rgf_B 50 IQALGEHLKLRQQVIATATVYFKRFYARYSLKSIDPVLMAPTCVFLASKVE 100 (285)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHhCCchhcCHHHHHHHHHHHHHhhh
Confidence 357788999999999999999999887666654 45566778899997664
No 24
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=30.23 E-value=89 Score=30.60 Aligned_cols=50 Identities=12% Similarity=0.076 Sum_probs=39.6
Q ss_pred HHHHhhhcCCCHHHHHHHHHHHHHhhcccCcc-ccchhhhHHHHhhhhhcc
Q psy9484 13 HQELCMALNIDSTTAKEAWNAYKEMSHHYTLE-GSQLHWLGCSLYVSCRKA 62 (407)
Q Consensus 13 f~~lC~~LnlD~~t~~~Aw~~~~~~~~~~tlE-g~~~~W~aCaLY~a~r~~ 62 (407)
..++|..|++.+.|...|..+|.+.-...++. .+-..-.+.+||.||+..
T Consensus 45 I~ev~~~l~L~~~t~~tAv~~~dRFl~~~sv~~~~~qlva~acLfLA~K~E 95 (358)
T 2pk2_A 45 LQDMGQRLNVSQLTINTAIVYMHRFYMIQSFTRFPGNSVAPAALFLAAKVE 95 (358)
T ss_dssp HHHHHTTTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHhhc
Confidence 45678889999999999999999988665554 445566788899997654
No 25
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=29.28 E-value=2e+02 Score=26.46 Aligned_cols=99 Identities=10% Similarity=0.061 Sum_probs=60.3
Q ss_pred HHHHhhhcCCCHHHHHHHHHHHHHhhcccCcc-ccchhhhHHHHhhhhhcccc-C-ccCCCccccCCcccHHHHHh----
Q psy9484 13 HQELCMALNIDSTTAKEAWNAYKEMSHHYTLE-GSQLHWLGCSLYVSCRKATV-P-TVNSNRTIEGNLVCLTSLLK---- 85 (407)
Q Consensus 13 f~~lC~~LnlD~~t~~~Aw~~~~~~~~~~tlE-g~~~~W~aCaLY~a~r~~~~-~-tv~~~~~~~~n~vsLt~LLr---- 85 (407)
..+.|..+++.+.|.--|..++.+.-...++. ..-..-++.+||.||+..-. | ++..=....++.++-.+|++
T Consensus 64 l~~v~~~~~l~~~tl~lAv~~lDRfls~~~v~~~~lqlv~~acL~iAsK~EE~~p~~~~~~~~~~~~~~~~~eI~~mE~~ 143 (271)
T 2w96_A 64 MLEVCEEQKCEEEVFPLAMNYLDRFLSLEPVKKSRLQLLGATCMFVASKMKETIPLTAEKLCIYTDNSIRPEELLQMELL 143 (271)
T ss_dssp HHHHHHHTTCCTTHHHHHHHHHHHHHTTSCCCTTTHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTTSSCHHHHHHHHHH
T ss_pred HHHHHHHHCCchhHHHHHHHHHHHhCCcCCcCHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHhcCCCCHHHHHHHHHH
Confidence 34567789999999999999999988766554 34455677889999877533 2 22110011223455544444
Q ss_pred ---h--hCCChHHHHHHHHHHHHhcCCChHH
Q psy9484 86 ---H--CKMSLNQFLNKCRKWADMRKLPDSF 111 (407)
Q Consensus 86 ---~--~~lsi~~Ff~kl~kw~~~~~L~~e~ 111 (407)
. +++++..=++-+..++...+++.+.
T Consensus 144 IL~~L~~~l~~~tp~~fl~~~~~~l~~~~~~ 174 (271)
T 2w96_A 144 LVNKLKWNLAAMTPHDFIEHFLSKMPEAEEN 174 (271)
T ss_dssp HHHHTTTCCCCCCHHHHHHHHHHTSCCCHHH
T ss_pred HHHHCCCccCCCCHHHHHHHHHHHcCCCchH
Confidence 3 3344444444466677777766543
No 26
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=27.60 E-value=3.4e+02 Score=24.47 Aligned_cols=50 Identities=8% Similarity=0.093 Sum_probs=38.1
Q ss_pred HHHHhhhcCCCHHHHHHHHHHHHHhhc--ccCccccchhhhHHHHhhhhhcc
Q psy9484 13 HQELCMALNIDSTTAKEAWNAYKEMSH--HYTLEGSQLHWLGCSLYVSCRKA 62 (407)
Q Consensus 13 f~~lC~~LnlD~~t~~~Aw~~~~~~~~--~~tlEg~~~~W~aCaLY~a~r~~ 62 (407)
...+++.++.+..+...||.+.+.+-. ...+.-....-.|.++|.|++..
T Consensus 150 l~~~~~~l~~~~~~~~~A~~~~~~sl~~~~~~l~~~Ps~IAaAai~lA~~~~ 201 (257)
T 2ivx_A 150 VVKCTQLVRASKDLAQTSYFMATNSLHLTTFCLQYKPTVIACVCIHLACKWS 201 (257)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHCCGGGTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHhhhhcccHHHcCCHHHHHHHHHHHHHHHh
Confidence 345678899999999999999877652 33556667777788899988764
No 27
>3lfp_A CSP231I C protein; transcriptional regulator, DNA binding protein, helix-turn-H restriction-modification, transcription; 2.00A {Citrobacter SP} PDB: 3lis_A
Probab=26.92 E-value=72 Score=24.42 Aligned_cols=37 Identities=16% Similarity=0.142 Sum_probs=22.9
Q ss_pred cHHHHHhhhCCChHHHHHHH---HHHHHh-cCCChHHHHHH
Q psy9484 79 CLTSLLKHCKMSLNQFLNKC---RKWADM-RKLPDSFRSKI 115 (407)
Q Consensus 79 sLt~LLr~~~lsi~~Ff~kl---~kw~~~-~~L~~e~~~~i 115 (407)
++.+|.+.+++++..||..- .+.... ..|+++-+..+
T Consensus 49 ~l~~la~~l~v~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~ 89 (98)
T 3lfp_A 49 MANRLAKVLKIPVSYLYTPEDDLAQIILTWNELNEQERKRI 89 (98)
T ss_dssp HHHHHHHHHTSCGGGGGCCCHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHCcCHHHHhCCChhHHHHHHHHHhCCHHHHHHH
Confidence 56677777788887776432 233323 45777766666
No 28
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=22.48 E-value=1.1e+02 Score=27.50 Aligned_cols=49 Identities=14% Similarity=0.153 Sum_probs=36.9
Q ss_pred HHHHhhhcCCCHHHHHHHHHHHHHhhccc-CccccchhhhHHHHhhhhhc
Q psy9484 13 HQELCMALNIDSTTAKEAWNAYKEMSHHY-TLEGSQLHWLGCSLYVSCRK 61 (407)
Q Consensus 13 f~~lC~~LnlD~~t~~~Aw~~~~~~~~~~-tlEg~~~~W~aCaLY~a~r~ 61 (407)
...+|+.++++..+...||.+.+.+..++ .+.-....=.|.++|.|++.
T Consensus 138 l~~~~~~~~~~~~~~~~A~~~l~~s~~~~~~l~~~Ps~IAaAai~lA~~~ 187 (235)
T 1zp2_A 138 LEQAFHDGIINQKQLEFAWSIVNDSYASSLCLMAHPHQLAYAALLISCCN 187 (235)
T ss_dssp HHHHHHTTSSCHHHHHHHHHHHHHHTTTTGGGTSCHHHHHHHHHHHHHTS
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHcCCchhccCHHHHHHHHHHHHHHh
Confidence 44567789999999999999999987544 34455666677788888654
No 29
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=21.43 E-value=2.5e+02 Score=25.55 Aligned_cols=50 Identities=12% Similarity=0.100 Sum_probs=38.6
Q ss_pred HHHHhhhcCCCHHHHHHHHHHHHHhhcccCcccc-chhhhHHHHhhhhhcc
Q psy9484 13 HQELCMALNIDSTTAKEAWNAYKEMSHHYTLEGS-QLHWLGCSLYVSCRKA 62 (407)
Q Consensus 13 f~~lC~~LnlD~~t~~~Aw~~~~~~~~~~tlEg~-~~~W~aCaLY~a~r~~ 62 (407)
..+.|..+++...|.--|..++.+.-...++.+. -..-+++++|.||+..
T Consensus 58 l~ev~~~~~l~~etl~lAv~~~DRfls~~~v~~~~lqLv~~acl~iA~K~e 108 (257)
T 1g3n_C 58 MFSVCQEYNLEPNVVALALNLLDRLLLIKQVSKEHFQKTGSACLLVASKLR 108 (257)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCccHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHc
Confidence 3457788999999999999999998876655444 4455677888888753
No 30
>3cuq_A Vacuolar-sorting protein SNF8; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_A
Probab=21.25 E-value=50 Score=30.99 Aligned_cols=83 Identities=19% Similarity=0.428 Sum_probs=45.3
Q ss_pred chHHHHHHHHHhhhcCCCHHHHHH-HHHHHHHhhcccCccccchhhhHHHHhhhhhccccCccCCCccccCCcccHHHHH
Q psy9484 6 DNETAHQHQELCMALNIDSTTAKE-AWNAYKEMSHHYTLEGSQLHWLGCSLYVSCRKATVPTVNSNRTIEGNLVCLTSLL 84 (407)
Q Consensus 6 ~~~~~~~f~~lC~~LnlD~~t~~~-Aw~~~~~~~~~~tlEg~~~~W~aCaLY~a~r~~~~~tv~~~~~~~~n~vsLt~LL 84 (407)
+.+.+.+|.+.|.++++|+-+... -|.-.-.+ ..|..| +|-=+..+|+.. ...+|.-++|++|.
T Consensus 37 dp~fR~~F~~mc~siGVDPlas~kg~ws~~lG~-gdfy~e------LavqIvEvC~~t--------r~~nGGli~L~el~ 101 (234)
T 3cuq_A 37 NPEFRVQFQDMCATIGVDPLASGKGFWSEMLGV-GDFYYE------LGVQIIEVCLAL--------KHRNGGLITLEELH 101 (234)
T ss_dssp CHHHHHHHHHHHHHHTCCTTSCTTSHHHHHHCH-HHHHHH------HHHHHHHHHHHH--------HHHHSSEEEHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCcccCCcchhhhhcCc-chHHHH------HHHHHHHHHHHH--------HHhcCCeeEHHHHH
Confidence 556889999999999999666442 22210001 111111 233344455443 23345557777766
Q ss_pred hhh---------CCChHHHHHHHHHHHH
Q psy9484 85 KHC---------KMSLNQFLNKCRKWAD 103 (407)
Q Consensus 85 r~~---------~lsi~~Ff~kl~kw~~ 103 (407)
... .||-.|-++-++++-.
T Consensus 102 ~~~~r~Rg~~~~~IS~dDi~rAik~L~~ 129 (234)
T 3cuq_A 102 QQVLKGRGKFAQDVSQDDLIRAIKKLKA 129 (234)
T ss_dssp HHHHHTTTTCCSSCCHHHHHHHHHHHGG
T ss_pred HHHHHhcCCccCccCHHHHHHHHHHHHh
Confidence 543 4566666655655543
No 31
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=20.50 E-value=2e+02 Score=26.88 Aligned_cols=51 Identities=12% Similarity=0.087 Sum_probs=38.7
Q ss_pred HHHHHhhhcCCCHHHHHHHHHHHHHhhccc-CccccchhhhHHHHhhhhhcc
Q psy9484 12 QHQELCMALNIDSTTAKEAWNAYKEMSHHY-TLEGSQLHWLGCSLYVSCRKA 62 (407)
Q Consensus 12 ~f~~lC~~LnlD~~t~~~Aw~~~~~~~~~~-tlEg~~~~W~aCaLY~a~r~~ 62 (407)
-...+|+.|+.+..+...||.+.+.+-.++ .+.-....-.|.++|.|++..
T Consensus 160 fL~~~~~~l~~~~~~~~~A~~~l~~sl~t~~~l~~~Ps~IAaAaiylA~~~~ 211 (285)
T 3rgf_B 160 PLLQYVQDMGQEDMLLPLAWRIVNDTYRTDLCLLYPPFMIALACLHVACVVQ 211 (285)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSSHHHHSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHccChhhccCHHHHHHHHHHHHHHHc
Confidence 345678899999999999999999876543 344556667788899887654
Done!