RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy9484
         (407 letters)



>d2r7ga1 a.74.1.3 (A:380-578) Retinoblastoma tumor suppressor
           domains {Human (Homo sapiens) [TaxId: 9606]}
          Length = 199

 Score = 67.1 bits (164), Expect = 1e-13
 Identities = 18/43 (41%), Positives = 33/43 (76%)

Query: 256 VIVRAEASLSRDIVKHLNLTEEQVLDSLAWVSNSPLWKNIEDS 298
             ++AE +L+R+++KHL   E ++++SLAW+S+SPL+  I+ S
Sbjct: 155 SFIKAEGNLTREMIKHLERCEHRIMESLAWLSDSPLFDLIKQS 197


>d1mtyg_ a.23.3.1 (G:) Methane monooxygenase hydrolase, gamma
           subunit {Methylococcus capsulatus [TaxId: 414]}
          Length = 162

 Score = 30.7 bits (69), Expect = 0.16
 Identities = 15/71 (21%), Positives = 29/71 (40%), Gaps = 5/71 (7%)

Query: 73  IEGNLVCLTSLLKHCKMSLNQFLNKCRKWADMRKLPDSFRSKIARLERNFAVSKVIFTKY 132
           IE  L    ++LK    +   F +K     D + + D   +K+   +  +   K+     
Sbjct: 53  IEAKLEEKVAVLKARAFNEVDFRHKTAFGEDAKSVLDGTVAKMNAAKDKWEAEKIHIG-- 110

Query: 133 LPMFKEMFKPP 143
              F++ +KPP
Sbjct: 111 ---FRQAYKPP 118


>d1mhyg_ a.23.3.1 (G:) Methane monooxygenase hydrolase, gamma
           subunit {Methylosinus trichosporium [TaxId: 426]}
          Length = 167

 Score = 30.7 bits (69), Expect = 0.19
 Identities = 14/71 (19%), Positives = 30/71 (42%), Gaps = 5/71 (7%)

Query: 73  IEGNLVCLTSLLKHCKMSLNQFLNKCRKWADMRKLPDSFRSKIARLERNFAVSKVIFTKY 132
           IE  +    S+LK  K+ +   + K     D   +  ++ +KI   +  +    +     
Sbjct: 56  IERKIEEKLSVLKTEKLPVADLITKATTGEDAAAVEATWIAKIKAAKSKYEAEAIHIE-- 113

Query: 133 LPMFKEMFKPP 143
              F++++KPP
Sbjct: 114 ---FRQLYKPP 121


>d1vola1 a.74.1.2 (A:113-207) Transcription factor IIB (TFIIB),
          core domain {Human (Homo sapiens) [TaxId: 9606]}
          Length = 95

 Score = 28.3 bits (63), Expect = 0.52
 Identities = 10/53 (18%), Positives = 22/53 (41%), Gaps = 1/53 (1%)

Query: 14 QELCMALNIDSTTAKEAWNAYKEMSHHYTLEG-SQLHWLGCSLYVSCRKATVP 65
            +   +N+         N +++     +L+G +        LY++CR+  VP
Sbjct: 10 TTMADRINLPRNKVDRTNNLFRQAYEQKSLKGRANDAIASACLYIACRQEGVP 62


>d1qsda_ a.7.5.1 (A:) Tubulin chaperone cofactor A {Baker's yeast
           (Saccharomyces cerevisiae), Rbl2p [TaxId: 4932]}
          Length = 102

 Score = 27.3 bits (61), Expect = 1.3
 Identities = 8/32 (25%), Positives = 16/32 (50%)

Query: 295 IEDSGQEIPGCEQKLRGNIEDLSAILEPENFD 326
           ++D+ + +P   +K+R   EDL   L+     
Sbjct: 52  LDDTKRLLPTLYEKIREFKEDLEQFLKTYQGT 83


>d1h7ca_ a.7.5.1 (A:) Tubulin chaperone cofactor A {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 103

 Score = 25.8 bits (57), Expect = 3.8
 Identities = 11/30 (36%), Positives = 17/30 (56%)

Query: 295 IEDSGQEIPGCEQKLRGNIEDLSAILEPEN 324
           +++S   IP C+++L     DL  ILE E 
Sbjct: 54  LQESRMMIPDCQRRLEAAYLDLQRILENEK 83


>d1y2ka1 a.211.1.2 (A:86-411) Catalytic domain of cyclic nucleotide
           phosphodiesterase pde4d {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 326

 Score = 27.0 bits (59), Expect = 4.4
 Identities = 9/46 (19%), Positives = 20/46 (43%), Gaps = 4/46 (8%)

Query: 117 RLERNFAVSKVIFTKY--LPMFKEM--FKPPDLDELLMHVRHNKKK 158
           +   +   S+V F  Y   P+++       PD  ++L  +  N++ 
Sbjct: 275 KHNASVEKSQVGFIDYIVHPLWETWADLVHPDAQDILDTLEDNREW 320


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.137    0.424 

Gapped
Lambda     K      H
   0.267   0.0641    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,578,247
Number of extensions: 75699
Number of successful extensions: 214
Number of sequences better than 10.0: 1
Number of HSP's gapped: 214
Number of HSP's successfully gapped: 11
Length of query: 407
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 320
Effective length of database: 1,213,086
Effective search space: 388187520
Effective search space used: 388187520
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (24.8 bits)