BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9485
(190 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P28749|RBL1_HUMAN Retinoblastoma-like protein 1 OS=Homo sapiens GN=RBL1 PE=1 SV=3
Length = 1068
Score = 155 bits (392), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 81/181 (44%), Positives = 118/181 (65%), Gaps = 10/181 (5%)
Query: 2 AMTPRTPLTGRHYLSKRDLEYGNVTPVKTATQSISRL-NLLCGRDPNPSPALTRIFEACN 60
+ P TPLTGR YL +++ +TPV +ATQS+SRL +++ G PS L IFE+C
Sbjct: 364 SFAPSTPLTGRRYLREKE---AVITPVASATQSVSRLQSIVAGLKNAPSDQLINIFESCV 420
Query: 61 KNPQPLIDSVLTNLGDKFTQHYSASGD----TARDFAEKRLSVAVCLYYKLLESILADEQ 116
+NP I +L +G+ F QHY+ S D + DFA RL +A LYYK+LE+++ E
Sbjct: 421 RNPVENIMKILKGIGETFCQHYTQSTDEQPGSHIDFAVNRLKLAEILYYKILETVMVQET 480
Query: 117 KK-PAYDFNVLLSLQIFHETLFACCIEIVIFCYNS-NSFPWILSVLGIEPYHFYKVIEWL 174
++ D +VLL IFH +L ACC+EIV+F Y+S +FPWI+ VL ++P++FYKVIE +
Sbjct: 481 RRLHGMDMSVLLEQDIFHRSLMACCLEIVLFAYSSPRTFPWIIEVLNLQPFYFYKVIEVV 540
Query: 175 L 175
+
Sbjct: 541 I 541
>sp|Q64701|RBL1_MOUSE Retinoblastoma-like protein 1 OS=Mus musculus GN=Rbl1 PE=1 SV=3
Length = 1063
Score = 155 bits (391), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 81/181 (44%), Positives = 118/181 (65%), Gaps = 10/181 (5%)
Query: 2 AMTPRTPLTGRHYLSKRDLEYGNVTPVKTATQSISRL-NLLCGRDPNPSPALTRIFEACN 60
+ P TPLTGR YL +++ TPV +ATQS+SRL +++ G PS L IFE+C
Sbjct: 364 SFAPSTPLTGRRYLQEKE---AVTTPVASATQSVSRLQSIVAGLKSAPSEQLLNIFESCM 420
Query: 61 KNPQPLIDSVLTNLGDKFTQHYSASGD----TARDFAEKRLSVAVCLYYKLLESILADEQ 116
+NP I ++ +G+ F QHY+ S D + DFA RL +A LYYK+LE+I+ E
Sbjct: 421 RNPMGNIIKIVKGIGETFCQHYTQSTDKQPGSHIDFAVNRLKLAEILYYKILETIMVQET 480
Query: 117 KK-PAYDFNVLLSLQIFHETLFACCIEIVIFCYNS-NSFPWILSVLGIEPYHFYKVIEWL 174
++ D +VLL IFH++L ACC+EIV+F Y+S +FPWI+ VL ++P++FYKVIE +
Sbjct: 481 RRLHGMDMSVLLEQDIFHKSLMACCLEIVLFAYSSPRTFPWIIEVLDLQPFYFYKVIEVV 540
Query: 175 L 175
+
Sbjct: 541 I 541
>sp|Q08999|RBL2_HUMAN Retinoblastoma-like protein 2 OS=Homo sapiens GN=RBL2 PE=1 SV=3
Length = 1139
Score = 115 bits (289), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 68/180 (37%), Positives = 100/180 (55%), Gaps = 9/180 (5%)
Query: 2 AMTPRTPLTGRHYLSKRDLEYGNVTPVKTATQSISRLN-LLCGRDPNPSPALTRIFEACN 60
A+ TPLTG Y+ + VTPV TAT S+SRL+ +L G PS L +I C+
Sbjct: 396 ALRISTPLTGVRYIKENS---PCVTPVSTATHSLSRLHTMLTGLRNAPSEKLEQILRTCS 452
Query: 61 KNPQPLIDSVLTNLGDKFTQHYSASGD---TARDFAEKRLSVAVCLYYKLLESILADEQK 117
++P I + L + + ++QH+ D A++ A K A LYYK+LES++ EQK
Sbjct: 453 RDPTQAIANRLKEMFEIYSQHFQPDEDFSNCAKEIASKHFRFAEMLYYKVLESVIEQEQK 512
Query: 118 KPA-YDFNVLLSLQIFHETLFACCIEIVIFCYN-SNSFPWILSVLGIEPYHFYKVIEWLL 175
+ D + +L FH +L ACC+E+V F Y +FP+I + + YHFYKVIE +
Sbjct: 513 RLGDMDLSGILEQDAFHRSLLACCLEVVTFSYKPPGNFPFITEIFDVPLYHFYKVIEVFI 572
>sp|Q64700|RBL2_MOUSE Retinoblastoma-like protein 2 OS=Mus musculus GN=Rbl2 PE=1 SV=3
Length = 1135
Score = 112 bits (281), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 65/175 (37%), Positives = 97/175 (55%), Gaps = 9/175 (5%)
Query: 7 TPLTGRHYLSKRDLEYGNVTPVKTATQSISRLN-LLCGRDPNPSPALTRIFEACNKNPQP 65
TPLTG Y+ + VTPV TA S+SRL+ +L G PS L RI +C+++P
Sbjct: 398 TPLTGVRYVQENS---PCVTPVSTAAHSLSRLHTMLSGLRNAPSEKLERILRSCSRDPTQ 454
Query: 66 LIDSVLTNLGDKFTQHYSAS---GDTARDFAEKRLSVAVCLYYKLLESILADEQKKPA-Y 121
I L + + ++QH+ + A++ A K A LYYK+LES++ EQK+
Sbjct: 455 AIADRLKEMYEIYSQHFQPDENFSNCAKEIANKHFRFAEMLYYKVLESVIEQEQKRLGDM 514
Query: 122 DFNVLLSLQIFHETLFACCIEIVIFCYN-SNSFPWILSVLGIEPYHFYKVIEWLL 175
D + +L FH +L ACC+E+V F + +FP+I + + YHFYKVIE +
Sbjct: 515 DLSGVLEHDAFHRSLLACCLEVVAFSHKPPGNFPFIAEIFDVPHYHFYKVIEVFI 569
>sp|O55081|RBL2_RAT Retinoblastoma-like protein 2 OS=Rattus norvegicus GN=Rbl2 PE=1
SV=1
Length = 1135
Score = 112 bits (279), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 64/174 (36%), Positives = 98/174 (56%), Gaps = 9/174 (5%)
Query: 8 PLTGRHYLSKRDLEYGNVTPVKTATQSISRLN-LLCGRDPNPSPALTRIFEACNKNPQPL 66
PLTG Y+ + VTPV TAT S++RL+ +L G PS L +I +C+++P
Sbjct: 399 PLTGVRYVQENS---PCVTPVSTATHSLNRLHTMLAGLRNAPSEKLEQILRSCSRDPTRA 455
Query: 67 IDSVLTNLGDKFTQHYSAS---GDTARDFAEKRLSVAVCLYYKLLESILADEQKKPA-YD 122
I L + + ++QH+ + A++ A K A LYYK+LES++ EQK+ D
Sbjct: 456 IADRLREMYEIYSQHFQPDENVSNCAKEMANKHFRFAEMLYYKVLESVIEQEQKRLGDMD 515
Query: 123 FNVLLSLQIFHETLFACCIEIVIFCYN-SNSFPWILSVLGIEPYHFYKVIEWLL 175
+ +L FH++L ACC+E+V F Y +FP+I + + YHFYKVIE +
Sbjct: 516 LSGVLEQDAFHKSLLACCLEVVAFSYKPPGNFPFIAEIFDVPHYHFYKVIEVFI 569
>sp|Q90600|RB_CHICK Retinoblastoma-associated protein OS=Gallus gallus GN=RB1 PE=1 SV=1
Length = 921
Score = 92.8 bits (229), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 55/172 (31%), Positives = 90/172 (52%), Gaps = 16/172 (9%)
Query: 26 TPVKTATQSISRLNLLCGRDPN-PSPALTRIFEACNKNPQPLIDSVLTNLGDKFTQHYS- 83
TPV+ A +I +L ++ + PS L F C NP+ I + +LG F + ++
Sbjct: 363 TPVRAAMNTIQQLMMILNSATDKPSDTLIAYFNNCTVNPEDSILKRVESLGHIFKKKFAE 422
Query: 84 ASGDTARDFAEKRLSVAVCLYYKLLESILADEQKK-PAYDFNVLLSLQIFHETLFACCIE 142
A G + +R + V LYY+++ES+L E+++ ++F+ LL+ IFH +L AC +E
Sbjct: 423 AVGQGCAEIGSQRYQLGVRLYYRVMESMLKSEEERLSVHNFSKLLNDNIFHTSLLACALE 482
Query: 143 IVIFCYNSN-------------SFPWILSVLGIEPYHFYKVIEWLLTPNPEV 181
IV+ Y SFPWIL+V ++ + FYKVIE + P +
Sbjct: 483 IVMATYGRTASQSDGTSAETDLSFPWILNVFDLKAFDFYKVIESFIKVEPSL 534
>sp|P33568|RB_RAT Retinoblastoma-associated protein OS=Rattus norvegicus GN=Rb1 PE=1
SV=3
Length = 920
Score = 92.8 bits (229), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 56/161 (34%), Positives = 89/161 (55%), Gaps = 14/161 (8%)
Query: 26 TPVKTATQSISRLN-LLCGRDPNPSPALTRIFEACNKNPQPLIDSVLTNLGDKFTQHY-S 83
TPV+T +I +L +L PS L F C NP+ I + ++G F + + S
Sbjct: 366 TPVRTVMNTIQQLMVILNSASDQPSENLISYFSNCTVNPKENILKRVKDVGHIFKEKFAS 425
Query: 84 ASGDTARDFAEKRLSVAVCLYYKLLESILADEQKKPA-YDFNVLLSLQIFHETLFACCIE 142
A G D +R + V LYY+++ES+L E+++ + +F+ LL+ IFH +L AC +E
Sbjct: 426 AVGQGCIDIGAQRYKLGVRLYYRVMESMLKSEEERLSIQNFSKLLNDNIFHMSLLACALE 485
Query: 143 IVIFCYNSN-----------SFPWILSVLGIEPYHFYKVIE 172
+V+ Y+ + SFPWIL+VL ++ + FYKVIE
Sbjct: 486 VVMATYSRSMLQNLDSGTDLSFPWILNVLNLKAFDFYKVIE 526
>sp|P13405|RB_MOUSE Retinoblastoma-associated protein OS=Mus musculus GN=Rb1 PE=1 SV=2
Length = 921
Score = 91.3 bits (225), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 55/161 (34%), Positives = 89/161 (55%), Gaps = 14/161 (8%)
Query: 26 TPVKTATQSISRLN-LLCGRDPNPSPALTRIFEACNKNPQPLIDSVLTNLGDKFTQHYS- 83
TPV+T +I +L +L PS L F C NP+ I + ++G F + ++
Sbjct: 367 TPVRTVMNTIQQLMVILNSASDQPSENLISYFNNCTVNPKENILKRVKDVGHIFKEKFAN 426
Query: 84 ASGDTARDFAEKRLSVAVCLYYKLLESILADEQKKPA-YDFNVLLSLQIFHETLFACCIE 142
A G D +R + V LYY+++ES+L E+++ + +F+ LL+ IFH +L AC +E
Sbjct: 427 AVGQGCVDIGVQRYKLGVRLYYRVMESMLKSEEERLSIQNFSKLLNDNIFHMSLLACALE 486
Query: 143 IVIFCYNSN-----------SFPWILSVLGIEPYHFYKVIE 172
+V+ Y+ + SFPWIL+VL ++ + FYKVIE
Sbjct: 487 VVMATYSRSTLQHLDSGTDLSFPWILNVLNLKAFDFYKVIE 527
>sp|P06400|RB_HUMAN Retinoblastoma-associated protein OS=Homo sapiens GN=RB1 PE=1 SV=2
Length = 928
Score = 90.1 bits (222), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 54/161 (33%), Positives = 89/161 (55%), Gaps = 14/161 (8%)
Query: 26 TPVKTATQSISRLNL-LCGRDPNPSPALTRIFEACNKNPQPLIDSVLTNLGDKFTQHYS- 83
TPV+T +I +L + L PS L F C NP+ I + ++G F + ++
Sbjct: 373 TPVRTVMNTIQQLMMILNSASDQPSENLISYFNNCTVNPKESILKRVKDIGYIFKEKFAK 432
Query: 84 ASGDTARDFAEKRLSVAVCLYYKLLESILADEQKKPA-YDFNVLLSLQIFHETLFACCIE 142
A G + +R + V LYY+++ES+L E+++ + +F+ LL+ IFH +L AC +E
Sbjct: 433 AVGQGCVEIGSQRYKLGVRLYYRVMESMLKSEEERLSIQNFSKLLNDNIFHMSLLACALE 492
Query: 143 IVIFCYNSN-----------SFPWILSVLGIEPYHFYKVIE 172
+V+ Y+ + SFPWIL+VL ++ + FYKVIE
Sbjct: 493 VVMATYSRSTSQNLDSGTDLSFPWILNVLNLKAFDFYKVIE 533
>sp|Q24472|RBF_DROME Retinoblastoma family protein OS=Drosophila melanogaster GN=Rbf
PE=1 SV=2
Length = 845
Score = 71.2 bits (173), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 85/175 (48%), Gaps = 18/175 (10%)
Query: 5 PRTPLTGRHYLSKRDLEYGN-VTPVKTATQSISRLNLLCGRDPNPSPALTRIFEACNKNP 63
P TPLT + L + G+ PV+ AT ++ +L+ GR P+ + + E
Sbjct: 354 PVTPLTRKQDLPAQPAMAGDKFEPVRNATNNVKQLSAF-GRITEPTDFVKQAGEEVIAK- 411
Query: 64 QPLIDSVLTNLGDKFTQHYSASGDTARDFAEKRLSVAVCLYYKLLESILADE-QKKPAYD 122
+ S++ + KF Y ++ A+ R +A ++ LL+ IL E + KP D
Sbjct: 412 ---LLSIIEEIEQKFLAKYPSTE------AKSRFQLAKSFFFYLLDQILQAEIRNKPDID 462
Query: 123 FNVLL----SLQIFHETLFACCIEIVIFCYNSN-SFPWILSVLGIEPYHFYKVIE 172
LL SL IF+ TL ACC+E+V+ Y + FPW+L I + F K+IE
Sbjct: 463 LKRLLVQKVSLVIFNITLMACCVELVLEAYKTELKFPWVLDCFSISAFEFQKIIE 517
>sp|Q84QM3|RBR1_ORYSJ Retinoblastoma-related protein 1 OS=Oryza sativa subsp. japonica
GN=RBR1 PE=2 SV=1
Length = 1010
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 82/177 (46%), Gaps = 17/177 (9%)
Query: 10 TGRHYLSKRDLEYGNVTPVKTATQSISRLNLLCGRDPN-PSPALTRIFEACNKNPQP--- 65
TG Y S + +TPV TA + L P+ PS L R F AC+K+
Sbjct: 406 TGNGYCSSK---MAPITPVSTAMTTAKWLRSTISPLPSKPSGELLRFFSACDKDVTDDIT 462
Query: 66 -----LIDSVLTN--LGDKFTQHYSASGDTARDFAEKRLSVAVCLYYKLLESIL-ADEQK 117
++ ++ T+ G++ ++ + E+R A+ LYY++LES+ A+ Q
Sbjct: 463 RRAGIILGAIFTSSSFGERICTSVRSTNRIDAIWTEQRKMEALKLYYRVLESMCRAETQI 522
Query: 118 KPAYDFNVLLSLQIFHETLFACCIEIVIFCYNSNS--FPWILSVLGIEPYHFYKVIE 172
+ LLS + FH + AC E+V+ + + + FP +L GI + KVIE
Sbjct: 523 LSGNNLTSLLSNERFHRCMIACSAELVLATHKTVTMMFPAVLEKTGITAFDLSKVIE 579
>sp|A2YXJ7|RBR1_ORYSI Retinoblastoma-related protein 1 OS=Oryza sativa subsp. indica
GN=RBR1 PE=3 SV=1
Length = 1010
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 82/177 (46%), Gaps = 17/177 (9%)
Query: 10 TGRHYLSKRDLEYGNVTPVKTATQSISRLNLLCGRDPN-PSPALTRIFEACNKNPQP--- 65
TG Y S + +TPV TA + L P+ PS L R F AC+K+
Sbjct: 406 TGNGYCSSK---MAPITPVSTAMTTAKWLRSTISPLPSKPSGELLRFFSACDKDVTDDIT 462
Query: 66 -----LIDSVLTN--LGDKFTQHYSASGDTARDFAEKRLSVAVCLYYKLLESIL-ADEQK 117
++ ++ T+ G++ ++ + E+R A+ LYY++LES+ A+ Q
Sbjct: 463 RRAGIILGAIFTSSSFGERICTSVRSTNRIDAIWTEQRKMEALKLYYRVLESMCRAETQI 522
Query: 118 KPAYDFNVLLSLQIFHETLFACCIEIVIFCYNSNS--FPWILSVLGIEPYHFYKVIE 172
+ LLS + FH + AC E+V+ + + + FP +L GI + KVIE
Sbjct: 523 LSGNNLTSLLSNERFHRCMIACSAELVLATHKTVTMMFPAVLEKTGITAFDLSKVIE 579
>sp|B9GLX8|RBR_POPTR Retinoblastoma-related protein OS=Populus trichocarpa GN=RBL901
PE=2 SV=1
Length = 1035
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 83/166 (50%), Gaps = 15/166 (9%)
Query: 25 VTPVKTATQSISRLNLLCGRDPN-PSPALTRIFEACNKN--------PQPLIDSVL--TN 73
TPV TA + L + P+ PS L R +C+K+ Q +++++ ++
Sbjct: 430 ATPVSTAMTTAKWLRTIISPLPSKPSAQLERFLVSCDKDVTNDVIRRAQIILEAIFPSSS 489
Query: 74 LGDKFTQHYSASGDTARD-FAEKRLSVAVCLYYKLLESI-LADEQKKPAYDFNVLLSLQI 131
LG++ S + + +AE+R A+ LYY++LES+ A+ Q A + LL+ +
Sbjct: 490 LGERCVNGSLQSTNLMDNIWAEQRRLEALKLYYRVLESMCTAEAQILHATNLTSLLTNER 549
Query: 132 FHETLFACCIEIVIFCYNSNS--FPWILSVLGIEPYHFYKVIEWLL 175
FH + AC E+V+ Y + + FP +L GI + KVIE +
Sbjct: 550 FHRCMLACSAELVVATYKTVTMLFPAVLERTGITAFDLSKVIESFI 595
>sp|Q9SXN6|RBR1_TOBAC Retinoblastoma-related protein 1 OS=Nicotiana tabacum GN=RB1 PE=2
SV=1
Length = 961
Score = 58.2 bits (139), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 81/169 (47%), Gaps = 20/169 (11%)
Query: 25 VTPVKTATQSISRLN-LLCGRDPNPSPALTRIFEACNKN--------PQPLIDSVLTNLG 75
TPV TA + L ++ P PS L R +C+++ Q +++++ + G
Sbjct: 403 ATPVSTAMTTARWLRTVIAPLQPKPSAELERFLSSCDRDVTADVIRRAQIILEAIFPSSG 462
Query: 76 DKFTQHYSASGDTARD------FAEKRLSVAVCLYYKLLESI-LADEQKKPAYDFNVLLS 128
+H +A G +AE+R S A+ LYY++L+++ A+ Q + LL+
Sbjct: 463 P--AEHCAAGGSLQSTSLMDNIWAEQRTSEALKLYYRVLQTMCTAESQILNGNNLTSLLT 520
Query: 129 LQIFHETLFACCIEIVIFCYNSNS--FPWILSVLGIEPYHFYKVIEWLL 175
+ FH + AC E+V+ + + + FP +L GI + KVIE +
Sbjct: 521 NERFHRCMLACSAELVLATHKTVTMLFPAVLERTGITAFDLSKVIESFI 569
>sp|Q66WV0|RBR1_NICBE Retinoblastoma-related protein 1 OS=Nicotiana benthamiana GN=RBR1
PE=2 SV=1
Length = 1003
Score = 57.8 bits (138), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 81/169 (47%), Gaps = 20/169 (11%)
Query: 25 VTPVKTATQSISRLN-LLCGRDPNPSPALTRIFEACNKN--------PQPLIDSVLTNLG 75
TPV TA + L ++ P PS L R +C+++ Q +++++ + G
Sbjct: 404 ATPVSTAMTTARWLRTVIAPLQPKPSAELERFLSSCDRDVTADVIRRAQIILEAIFPSSG 463
Query: 76 DKFTQHYSASGDTARD------FAEKRLSVAVCLYYKLLESI-LADEQKKPAYDFNVLLS 128
+H +A G +AE+R S A+ LYY++L+++ A+ Q + LL+
Sbjct: 464 P--AEHCAAGGSLQSTSLMDNIWAEQRRSEALKLYYRVLQTMCTAESQILNGNNLTSLLT 521
Query: 129 LQIFHETLFACCIEIVIFCYNSNS--FPWILSVLGIEPYHFYKVIEWLL 175
+ FH + AC E+V+ + + + FP +L GI + KVIE +
Sbjct: 522 NERFHRCMLACSAELVLATHKTVTMLFPAVLERTGITAFDLSKVIESFI 570
>sp|Q3LXA7|RBR3_MAIZE Retinoblastoma-related protein 3 OS=Zea mays GN=RBR3 PE=2 SV=1
Length = 1010
Score = 57.8 bits (138), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 76/167 (45%), Gaps = 20/167 (11%)
Query: 26 TPVKTATQSISRL-NLLCGRDPNPSPALTRIFEACNKNPQPLIDSVL------------- 71
TPV TA + L N + PS L R F AC+K+ L D +
Sbjct: 416 TPVSTAMTTAKWLRNTVSPLPSRPSGELLRFFSACDKD---LTDDIAHRAGIILGAIFTS 472
Query: 72 TNLGDKFTQHYSASGDTARDFAEKRLSVAVCLYYKLLESIL-ADEQKKPAYDFNVLLSLQ 130
++ G++ ++ + E+R A+ LYY++LES+ A+ Q + LLS +
Sbjct: 473 SSFGERICTSMRSASRMDAIWTEQRKMEALKLYYRVLESMCRAESQILSGNNLTSLLSNE 532
Query: 131 IFHETLFACCIEIVIFCYNSNS--FPWILSVLGIEPYHFYKVIEWLL 175
FH + AC E+V+ + + + FP +L GI + KVIE +
Sbjct: 533 RFHRCMIACSAELVLATHKTVTMMFPAVLEKTGITAFDLSKVIEGFV 579
>sp|Q9LKZ3|RBR1_ARATH Retinoblastoma-related protein 1 OS=Arabidopsis thaliana GN=RBR1
PE=1 SV=1
Length = 1013
Score = 56.6 bits (135), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 81/166 (48%), Gaps = 15/166 (9%)
Query: 25 VTPVKTATQSISRLN-LLCGRDPNPSPALTRIFEACNKN--------PQPLIDSVLTN-- 73
TPV TA + L ++ P PSP L ++C+++ +++++ N
Sbjct: 405 ATPVSTAMTTAKWLRTVISPLLPKPSPGLEHFLKSCDRDITNDVTRRAHIILEAIFPNSS 464
Query: 74 LGDKFTQHYSASGDTARD-FAEKRLSVAVCLYYKLLESIL-ADEQKKPAYDFNVLLSLQI 131
LG + + D D +AE+R A LYY++LE++ A+ Q A + N LL+ +
Sbjct: 465 LGAQCGGGSLQAVDLMDDIWAEQRRLEACKLYYRVLEAMCKAEAQILHANNLNSLLTNER 524
Query: 132 FHETLFACCIEIVIFCYNSNS--FPWILSVLGIEPYHFYKVIEWLL 175
FH + AC E+V+ + + + FP +L GI + KVIE +
Sbjct: 525 FHRCMLACSAELVLATHKTITMLFPAVLERTGITAFDLSKVIESFI 570
>sp|A9UL13|RBR1_WHEAT Retinoblastoma-related protein 1 OS=Triticum aestivum GN=RBR1 PE=2
SV=1
Length = 957
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 75/161 (46%), Gaps = 14/161 (8%)
Query: 26 TPVKTATQSISRLNLLCGRDPN-PSPALTRIFEACNKN--------PQPLIDSVLT--NL 74
TPV TA + L P+ PS L R F AC+K+ ++ ++ T +
Sbjct: 369 TPVSTAMTTAKWLRSTISPLPSKPSGELLRFFSACDKDVTDDITCRAAIILGAIFTGSSF 428
Query: 75 GDKFTQHYSASGDTARDFAEKRLSVAVCLYYKLLESIL-ADEQKKPAYDFNVLLSLQIFH 133
G++ + + E+R A+ LYY++LES+ A+ Q + LLS + FH
Sbjct: 429 GERMCTSLRNTSGMDAIWTEQRKMEALKLYYRVLESMCRAESQILSGSNLTSLLSNERFH 488
Query: 134 ETLFACCIEIVIFCYNSNS--FPWILSVLGIEPYHFYKVIE 172
+ AC E+V+ + + + FP +L GI + KVIE
Sbjct: 489 RCMIACSAELVLATHKTVTMMFPAVLEKTGITAFDLSKVIE 529
>sp|B9SVG9|RBR_RICCO Retinoblastoma-related protein OS=Ricinus communis GN=RBR PE=2 SV=1
Length = 1020
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 82/166 (49%), Gaps = 15/166 (9%)
Query: 25 VTPVKTATQSISRLNLLCGRDPN-PSPALTRIFEACNKN--------PQPLIDSVLTN-- 73
TPV TA + L + P+ PSP L R +C+++ +++++ +
Sbjct: 414 ATPVSTAMTTAKWLRTVISPLPSKPSPQLERFLASCDRDVTNDVIRRAHIILEAIFPSNA 473
Query: 74 LGDK-FTQHYSASGDTARDFAEKRLSVAVCLYYKLLESI-LADEQKKPAYDFNVLLSLQI 131
LG++ T ++ +AE+R A+ LYY++LE++ A+ Q A + LL+ +
Sbjct: 474 LGERCVTGSLQSTNLMDNIWAEQRRLEALKLYYRVLEAMCTAEAQILHATNLTSLLTNER 533
Query: 132 FHETLFACCIEIVIFCYNSNS--FPWILSVLGIEPYHFYKVIEWLL 175
FH + AC E+V+ + + + FP +L GI + KVIE +
Sbjct: 534 FHRCMLACSAELVLATHKTVTMLFPAVLERTGITAFDLSKVIESFI 579
>sp|A9UL14|RBR_MEDSA Retinoblastoma-related protein OS=Medicago sativa GN=RBR PE=2 SV=1
Length = 1025
Score = 54.7 bits (130), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 77/162 (47%), Gaps = 14/162 (8%)
Query: 25 VTPVKTATQSISRLNLLCGRDPN-PSPALTRIFEACNKN--------PQPLIDSVLTN-- 73
TPV TA + L + P+ PS L R +C+++ Q ++ ++ +
Sbjct: 414 ATPVSTAMTTAKWLRTVISPLPSKPSQELERFLTSCDRDITSEVVRRAQIILQAIFPSSP 473
Query: 74 LGDKFTQHYSASGDTARD-FAEKRLSVAVCLYYKLLESILADEQKKPAYDFNVLLSLQIF 132
LGD+ S + + +AE+R A+ LYY+LL ++ E + + LL+ + F
Sbjct: 474 LGDRCVTGSLQSANLMDNIWAEQRRLEAMKLYYRLLATMCRAEAQILGNNLTSLLTNERF 533
Query: 133 HETLFACCIEIVIFCYNSNS--FPWILSVLGIEPYHFYKVIE 172
H + AC E+V+ + + + FP +L GI + KVIE
Sbjct: 534 HRCMLACSAELVLATHKTVTMLFPAVLERTGITAFDLSKVIE 575
>sp|Q9SLZ4|RBR1_PEA Retinoblastoma-related protein 1 OS=Pisum sativum GN=RBR1 PE=2 SV=1
Length = 1026
Score = 54.3 bits (129), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 77/162 (47%), Gaps = 14/162 (8%)
Query: 25 VTPVKTATQSISRLNLLCGRDPN-PSPALTRIFEACNKN--------PQPLIDSVLTN-- 73
TPV TA + L + P+ PS L R +C+K+ Q ++ ++ +
Sbjct: 415 ATPVSTAMTTAKWLRTVISPLPSKPSQELERFLTSCDKDITSDVIRRAQIILQAIFPSSP 474
Query: 74 LGDKFTQHYSASGDTARD-FAEKRLSVAVCLYYKLLESILADEQKKPAYDFNVLLSLQIF 132
LGD+ S + + +AE+R A+ LYY++L ++ E + + LL+ + F
Sbjct: 475 LGDRCVTGSLQSANLMDNIWAEQRRLEALKLYYRVLATMCRAEAQILGNNLTSLLTNERF 534
Query: 133 HETLFACCIEIVIFCYNSNS--FPWILSVLGIEPYHFYKVIE 172
H + AC E+V+ + + + FP +L GI + KVIE
Sbjct: 535 HRCMLACSAELVLATHKTVTMLFPAVLERTGITAFDLSKVIE 576
>sp|O82677|RBR_CHERU Retinoblastoma-related protein OS=Chenopodium rubrum GN=RB PE=2
SV=1
Length = 1012
Score = 53.5 bits (127), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 79/162 (48%), Gaps = 15/162 (9%)
Query: 26 TPVKTATQSISRLNLLCGRDPN-PSPALTRIFEACNKN--------PQPLIDSVLTN--L 74
TPV TA + L P+ PSP L + +C++N +++++ N L
Sbjct: 403 TPVSTAMTTAKWLRTYISPLPSKPSPQLEKYLMSCDRNISSEVVRRAHIIMEAIFPNSAL 462
Query: 75 GDK-FTQHYSASGDTARDFAEKRLSVAVCLYYKLLESI-LADEQKKPAYDFNVLLSLQIF 132
G++ S T +A++R A+ LYY++LE++ A+ Q A + LL+ + F
Sbjct: 463 GERCIAGSLPNSNLTDNIWAQQRRLEALKLYYRVLETMCTAEAQLLHANNLTSLLTNERF 522
Query: 133 HETLFACCIEIVIFCYNSNS--FPWILSVLGIEPYHFYKVIE 172
H + AC E+V+ + + + FP +L GI + KVIE
Sbjct: 523 HRCMLACSAELVLATHKTVTMLFPAVLEKTGITAFDLSKVIE 564
>sp|A7P514|RBR_VITVI Retinoblastoma-related protein OS=Vitis vinifera GN=RBR PE=2 SV=1
Length = 1007
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 82/164 (50%), Gaps = 16/164 (9%)
Query: 26 TPVKTATQSISRLNLLCGRDPN-PSPALTRIFEACNKN--------PQPLIDSVLTNL-- 74
TPV TA + L + P+ PS L R +C+K+ +++++ ++
Sbjct: 406 TPVTTAMTTAKWLRTVISPLPSKPSAELERFLTSCDKDVTSDVIRRANVILEAIFPSIAF 465
Query: 75 GDKFTQHYSASGDTARDFAEKRLSVAVCLYYKLLESI-LADEQKKPAYDFNVLLSLQIFH 133
G++ ++ D+ +A++R A+ LYY++LE++ A+ Q A + LL+ + FH
Sbjct: 466 GERCVTGSASLMDSI--WAQQRRMEAMKLYYRVLEAMCTAEAQVLHANNLTSLLTNERFH 523
Query: 134 ETLFACCIEIVIFCYNSNS--FPWILSVLGIEPYHFYKVIEWLL 175
+ AC E+V+ + + + FP +L GI + KVIE +
Sbjct: 524 RCMLACSAELVLATHKTVTMLFPAVLERTGITAFDLSKVIESFI 567
>sp|Q2ABE5|RBR_CAMSI Retinoblastoma-related protein OS=Camellia sinensis GN=pRB PE=2
SV=1
Length = 1025
Score = 51.2 bits (121), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 78/162 (48%), Gaps = 15/162 (9%)
Query: 25 VTPVKTATQSISRL-NLLCGRDPNPSPALTRIFEACN--------KNPQPLIDSVL--TN 73
TPV TA + L ++ P PSP L R +C+ + +++++ +
Sbjct: 421 ATPVTTAMTTAKWLRTIISPLPPKPSPELERFLSSCDSDVTTDVIRRANIILEAIFPSSG 480
Query: 74 LGDK-FTQHYSASGDTARDFAEKRLSVAVCLYYKLLESI-LADEQKKPAYDFNVLLSLQI 131
LG++ T + +AE+R A+ LYY++L+++ A+ Q A + LL+ +
Sbjct: 481 LGEECITGGLQCTSLMDSIWAEQRRLEALKLYYRVLQAMCTAEAQILHANNLTSLLTNER 540
Query: 132 FHETLFACCIEIVIFCYNSNS--FPWILSVLGIEPYHFYKVI 171
FH + AC E+V+ + + + FP +L GI + K+I
Sbjct: 541 FHRCMLACSAELVLATHKTATMLFPAVLERTGITAFDLSKMI 582
>sp|Q4JF75|RBR_SCUBA Retinoblastoma-related protein OS=Scutellaria baicalensis GN=RB
PE=2 SV=1
Length = 1006
Score = 51.2 bits (121), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 79/159 (49%), Gaps = 17/159 (10%)
Query: 26 TPVKTATQSISRLNLLCGRDPN-PSPALTRIFEACNKNPQP--------LIDSVLTNLGD 76
TPV TA + L + P+ PS L + +C+++ P +++++ + G
Sbjct: 411 TPVTTAMTTAKWLRTVIAPLPSKPSAELEKFLTSCDRDVTPDVTRRAQIILEAIFPSSG- 469
Query: 77 KFTQHYSASGDTARDFAEKRLSVAVCLYYKLLESI-LADEQKKPAYDFNVLLSLQIFHET 135
Q+ S + +AE+R A+ LY+++L+++ A+ Q A + LL+ + FH
Sbjct: 470 -LGQNASLMDNI---WAEQRRMEAMKLYFRVLQALCTAESQILHANNLTSLLTNERFHRC 525
Query: 136 LFACCIEIVIFCYNSNS--FPWILSVLGIEPYHFYKVIE 172
+ AC E+V+ + + + FP +L GI + KVIE
Sbjct: 526 MLACSAELVLATHKTVTMLFPTVLERTGITAFDLSKVIE 564
>sp|A9SVH7|RBR_PHYPA Retinoblastoma-related protein OS=Physcomitrella patens subsp.
patens GN=RBR PE=3 SV=1
Length = 1116
Score = 50.1 bits (118), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 67/140 (47%), Gaps = 14/140 (10%)
Query: 47 NPSPALTRIFEACNKN--------PQPLIDSVLTNLGDKFTQHYSASGDTARDFAEKRLS 98
PS L F +C+++ L+D + + Q + D + E+R
Sbjct: 562 EPSVELQLFFRSCDRDISADVKNRAHVLLDLIFSAERGGGWQGVAGLMDV---WPEQRKL 618
Query: 99 VAVCLYYKLLESIL-ADEQKKPAYDFNVLLSLQIFHETLFACCIEIVIFCYNSNS--FPW 155
A+ LYYK+L ++ ++EQ+ ++ LLS + FH + AC E+V+ + + + FP
Sbjct: 619 EAIKLYYKVLGAMCRSEEQRLHTHNLTSLLSNERFHRCMIACSAELVLATHKTVTMGFPA 678
Query: 156 ILSVLGIEPYHFYKVIEWLL 175
+L GI + KVIE+ +
Sbjct: 679 VLEPAGITAFDLSKVIEYFV 698
>sp|B1ABR6|RBR_HIEPI Retinoblastoma-related protein OS=Hieracium piloselloides GN=RBR
PE=2 SV=1
Length = 1005
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 80/165 (48%), Gaps = 15/165 (9%)
Query: 26 TPVKTATQSISRLNLLCG-RDPNPSPALTRIFEACNKN--------PQPLIDSVLTNLG- 75
TPV TA + L + PS LTR ++C+K+ + +++++ + G
Sbjct: 404 TPVSTAMTTAKWLRTVVSPLSSFPSVDLTRFLQSCDKDVTSDVIKRARIILEAIFPSSGI 463
Query: 76 -DKFTQHYSASGDTARD-FAEKRLSVAVCLYYKLLESIL-ADEQKKPAYDFNVLLSLQIF 132
D+ + + + + +AE+R A+ LYY++L ++ A+ Q + LL+ + F
Sbjct: 464 PDRTVLSNTQTTNLMDNIWAEQRRLEALKLYYRVLHAMCKAESQILHGNNLTSLLTNERF 523
Query: 133 HETLFACCIEIVIFCYNSNS--FPWILSVLGIEPYHFYKVIEWLL 175
H + AC E+V+ + + + FP +L GI + KVIE +
Sbjct: 524 HRCMLACSAELVLATHKTVTMLFPAVLERTGITAFDLSKVIESFI 568
>sp|Q8H252|RBR_COCNU Retinoblastoma-related protein OS=Cocos nucifera GN=Rb1 PE=2 SV=1
Length = 1011
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 85/185 (45%), Gaps = 20/185 (10%)
Query: 3 MTPRTPLTGRHYLSKRDLEYGNVTPVKTATQSISRL-NLLCGRDPNPSPALTRIFEACNK 61
++P +P+ G + + +TPV TA + L N++ PS L F +C++
Sbjct: 393 LSPASPVNGNPVI-----KMVPITPVSTAMTTAKWLRNIISPLPSRPSTELLCFFSSCDR 447
Query: 62 N--------PQPLIDSVL--TNLGDK-FTQHYSASGDTARDFAEKRLSVAVCLYYKLLES 110
+ ++ ++ T+ GD + + + +AE+R A+ LYY++LE+
Sbjct: 448 DITTDVTRRASIILGAIFPTTSFGDCCISGNLQSVNQMDSIWAEQRKVEAMKLYYRVLET 507
Query: 111 IL-ADEQKKPAYDFNVLLSLQIFHETLFACCIEIVIFCYNSNS--FPWILSVLGIEPYHF 167
+ A+ + LLS FH + AC E+V+ + + + FP +L GI +
Sbjct: 508 MCRAESHILNGNNLTSLLSNDRFHRCMLACSAELVLATHKTVTMMFPAVLEKTGITAFDL 567
Query: 168 YKVIE 172
KVIE
Sbjct: 568 SKVIE 572
>sp|B1ABS0|RBR_HIEPL Retinoblastoma-related protein OS=Hieracium pilosella GN=RBR PE=2
SV=1
Length = 1008
Score = 47.4 bits (111), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 80/165 (48%), Gaps = 15/165 (9%)
Query: 26 TPVKTATQSISRLNLLCG-RDPNPSPALTRIFEACNKN--------PQPLIDSVLTNLG- 75
TPV TA + L + PS LTR ++C+K+ + +++++ + G
Sbjct: 404 TPVSTAMTTAKWLRTVVSPLSSFPSVDLTRFLQSCDKDVTSDVIKRARIILEAIFPSSGI 463
Query: 76 -DKFTQHYSASGDTARD-FAEKRLSVAVCLYYKLLESIL-ADEQKKPAYDFNVLLSLQIF 132
D+ + + + + +AE+R A+ LYY++L ++ A+ Q + LL+ + F
Sbjct: 464 PDRTIISNTQTTNLMDNIWAEQRRLEALKLYYRVLHAMCKAESQILHGNNLTSLLTNERF 523
Query: 133 HETLFACCIEIVIFCYNSNS--FPWILSVLGIEPYHFYKVIEWLL 175
H + AC E+V+ + + + FP +L GI + KVIE +
Sbjct: 524 HRCMLACSAELVLATHKTVTMLFPAVLERTGITAFDLSKVIESFI 568
>sp|Q2R374|RBR2_ORYSJ Retinoblastoma-related protein 2 OS=Oryza sativa subsp. japonica
GN=RBR2 PE=2 SV=2
Length = 978
Score = 47.0 bits (110), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 44/84 (52%), Gaps = 3/84 (3%)
Query: 92 FAEKRLSVAVCLYYKLLESIL-ADEQKKPAYDFNVLLSLQIFHETLFACCIEIVIFCYNS 150
+AE R A LYY++LE+I A+ Q + LLS + FH L AC E+V+ + +
Sbjct: 462 WAEARKMEASKLYYRVLEAICRAESQNNNVNNLTPLLSNERFHRCLIACSAELVLATHKT 521
Query: 151 --NSFPWILSVLGIEPYHFYKVIE 172
FP +L G+ + K+IE
Sbjct: 522 VIMMFPAVLESTGLTAFDLSKIIE 545
>sp|Q9LKX9|RBR1_MAIZE Retinoblastoma-related protein 1 OS=Zea mays GN=RBR1 PE=1 SV=2
Length = 867
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 81/184 (44%), Gaps = 21/184 (11%)
Query: 4 TPRTPLTGRHYLSKRDLEYGNVTPVKTATQSISRLNLLCGRDPN-PSPALTRIFEACNKN 62
+P +P TG ++ +TPV +A + L + P+ PS L + +C+++
Sbjct: 259 SPLSPATGG------SVKIVQMTPVTSAMTTAKWLREVISSLPDKPSSKLQQFLSSCDRD 312
Query: 63 -PQPLIDSVLTNLGDKFTQHYSASGDTARD----------FAEKRLSVAVCLYYKLLESI 111
+ + V L F SA+ + +AE R A LYY++LE+I
Sbjct: 313 LTNAVTERVSIVLEAIFPTKSSANRGVSLGLNCANAFDIPWAEARKVEASKLYYRVLEAI 372
Query: 112 L-ADEQKKPAYDFNVLLSLQIFHETLFACCIEIVIFCYNS--NSFPWILSVLGIEPYHFY 168
A+ Q + LLS + FH L AC ++V+ + + FP +L G+ +
Sbjct: 373 CRAELQNSNVNNLTPLLSNERFHRCLIACSADLVLATHKTVIMMFPAVLESTGLTAFDLS 432
Query: 169 KVIE 172
K+IE
Sbjct: 433 KIIE 436
>sp|Q8H0J6|RBR2_MAIZE Retinoblastoma-related protein 2 OS=Zea mays GN=RBR2 PE=2 SV=1
Length = 866
Score = 44.7 bits (104), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 84/187 (44%), Gaps = 18/187 (9%)
Query: 1 MAMTPRTPLTGRHYLSKRDLEYGNVTPVKTATQSISRLNLLCGRDP-NPSPALTRIFEAC 59
M P +PL+ + S + ++ +TP+ +A + L + P PS L ++ +C
Sbjct: 252 MLTVPSSPLSPTNGCSVKIVQ---MTPITSAMTTAKWLREVISSLPEKPSSKLQQLMSSC 308
Query: 60 NKN-PQPLIDSVLTNLGDKFTQHYSASG------DTARDF----AEKRLSVAVCLYYKLL 108
+++ + + V L F SA + A F A+ R A LYY++L
Sbjct: 309 DRDLTYAVTERVSIVLEAIFPTKSSADRGGSLGLNCANAFDTLWADARKMEASKLYYRVL 368
Query: 109 ESIL-ADEQKKPAYDFNVLLSLQIFHETLFACCIEIVIFCYNS--NSFPWILSVLGIEPY 165
E+I A+ Q + LLS + FH L AC ++V+ + + FP +L G+ +
Sbjct: 369 EAICRAELQNSNVNNLTPLLSNERFHRCLIACSADVVLATHKTVIMMFPAVLESAGLTSF 428
Query: 166 HFYKVIE 172
K+IE
Sbjct: 429 DLSKIIE 435
>sp|P0C6Y4|R1AB_PEDV7 Replicase polyprotein 1ab OS=Porcine epidemic diarrhea virus (strain
CV777) GN=rep PE=3 SV=1
Length = 6781
Score = 32.0 bits (71), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 39/94 (41%), Gaps = 10/94 (10%)
Query: 54 RIFEACNKNPQPLIDSVLTNLGDKFTQHYSASGDTARDFAEKRLSVAVCLYYKLLESILA 113
R F CN+ Q L + V +N G + SGD +A + + +++ A
Sbjct: 4746 RFFRLCNELAQVLTEVVYSNGGFYLKPGGTTSGDATTAYANS--------VFNIFQAVSA 4797
Query: 114 DEQKKPAYDFNVLLSLQI--FHETLFACCIEIVI 145
+ K + D NV +L++ L+ CC I
Sbjct: 4798 NVNKLLSVDSNVCHNLEVKQLQRKLYECCYRSTI 4831
>sp|Q05036|YLA4_CAEEL Uncharacterized protein C30C11.4 OS=Caenorhabditis elegans
GN=C30C11.4 PE=1 SV=1
Length = 776
Score = 31.2 bits (69), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Query: 69 SVLTNLGDKFTQHYSASGDTARDFAEKRLSVAVCLYYKLLESILADEQKKPAYD 122
SVLT+ D Y D RD EKRLS + ++E E +KPA+D
Sbjct: 609 SVLTSTEDWL---YDEGEDAERDVYEKRLSELKAVGTPVVERYRESETRKPAFD 659
>sp|P54772|DCHS_SOLLC Histidine decarboxylase OS=Solanum lycopersicum GN=HDC PE=2 SV=1
Length = 413
Score = 30.8 bits (68), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 23/51 (45%), Gaps = 7/51 (13%)
Query: 65 PLIDSVLTNLGDKFTQHYSASGDTARDFAEKRLSVAVCLYYKLLESILADE 115
PL+ L N GD FTQH DF K VAV ++ L I DE
Sbjct: 49 PLLQFHLNNCGDPFTQH-------PTDFHSKDFEVAVLDWFAQLWEIEKDE 92
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.137 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,452,864
Number of Sequences: 539616
Number of extensions: 2853161
Number of successful extensions: 5673
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 5602
Number of HSP's gapped (non-prelim): 43
length of query: 190
length of database: 191,569,459
effective HSP length: 111
effective length of query: 79
effective length of database: 131,672,083
effective search space: 10402094557
effective search space used: 10402094557
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)