Query psy9485
Match_columns 190
No_of_seqs 105 out of 148
Neff 6.0
Searched_HMMs 46136
Date Fri Aug 16 20:36:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9485.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9485hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01858 RB_A: Retinoblastoma- 100.0 1.2E-58 2.6E-63 383.5 13.7 158 26-183 1-165 (194)
2 KOG1010|consensus 100.0 3E-55 6.6E-60 416.1 17.6 178 4-184 379-562 (920)
3 PF06972 DUF1296: Protein of u 72.5 13 0.00028 25.5 5.1 40 30-72 4-44 (60)
4 PF06292 DUF1041: Domain of Un 47.1 49 0.0011 25.1 4.8 78 93-170 4-94 (106)
5 PF08579 RPM2: Mitochondrial r 32.0 81 0.0018 24.5 4.0 35 93-127 50-89 (120)
6 PF07340 Herpes_IE1: Cytomegal 30.6 4.5E+02 0.0097 24.5 9.5 42 26-67 28-82 (392)
7 TIGR03338 phnR_burk phosphonat 30.4 2.3E+02 0.0051 22.7 6.8 49 26-75 8-62 (212)
8 PF08630 Dfp1_Him1_M: Dfp1/Him 28.1 39 0.00084 26.4 1.7 15 120-134 46-60 (125)
9 PF06971 Put_DNA-bind_N: Putat 27.0 39 0.00085 22.1 1.3 25 102-126 12-37 (50)
10 PF03474 DMA: DMRTA motif; In 25.6 95 0.0021 19.5 2.8 26 45-70 13-38 (39)
11 cd08800 Death_UNC5A Death doma 24.4 1E+02 0.0023 22.4 3.2 32 45-76 42-75 (84)
12 PF14891 Peptidase_M91: Effect 24.3 39 0.00084 27.2 1.1 31 156-186 140-173 (174)
13 KOG1242|consensus 22.6 4.1E+02 0.0088 26.0 7.7 69 93-161 148-226 (569)
14 PRK13713 conjugal transfer pro 20.2 4.2E+02 0.0091 20.6 9.1 72 89-175 28-103 (118)
No 1
>PF01858 RB_A: Retinoblastoma-associated protein A domain; InterPro: IPR002720 Retinoblastoma-like and retinoblastoma-associated proteins may have a function in cell cycle regulation. They form a complex with adenovirus E1A and Simian virus 40 (SV40) large T antigen, and may bind and modulate the function of certain cellular proteins with which T and E1A compete for pocket binding. The proteins may act as tumor suppressors, and are potent inhibitors of E2F-mediated trans-activation. This domain has the cyclin fold []. The crystal structure of the Rb pocket bound to a nine-residue E7 peptide containing the LxCxE motif, shared by other Rb-binding viral and cellular proteins, shows that the LxCxE peptide binds a highly conserved groove on the B-box portion of the pocket; the A-box portion appears to be required for the stable folding of the B box (see IPR002719 from INTERPRO). Also highly conserved is the extensive A-B interface, suggesting that it may be an additional protein-binding site. The A and B boxes each contain the cyclin-fold structural motif, with the LxCxE-binding site on the B-box cyclin fold being similar to a Cdk2-binding site of cyclin A and to a TBP-binding site of TFIIB []. The A and B boxes are found at the C-terminal end of the protein; the A-box is on N-terminal side of the B-box.; GO: 0051726 regulation of cell cycle, 0005634 nucleus; PDB: 1O9K_A 3POM_A 1GH6_B 1N4M_A 4ELL_B 1AD6_A 1GUX_A 2R7G_C 4ELJ_A.
Probab=100.00 E-value=1.2e-58 Score=383.49 Aligned_cols=158 Identities=46% Similarity=0.807 Sum_probs=140.4
Q ss_pred ChhhHHHHHHHHHH-hhcCCCCCCcHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhhhhcCCCC---chHHHHHHHHHHH
Q psy9485 26 TPVKTATQSISRLN-LLCGRDPNPSPALTRIFEACNKNPQPLIDSVLTNLGDKFTQHYSASGDT---ARDFAEKRLSVAV 101 (190)
Q Consensus 26 TPvs~a~~s~~~L~-ll~~~~~~PS~~L~~~~~~c~~~p~~~I~~rv~~l~~~f~~~~~~~~~~---~~d~a~~R~~~a~ 101 (190)
||||+||++++||+ +++|.++.||++|.++|++|++||++.|.+||++|+++|.+++.+..+. ..+++++|+++|+
T Consensus 1 TPVs~A~~~~~~L~~~l~~~~~~PS~~L~~~~~~c~~~p~~~i~~rv~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 80 (194)
T PF01858_consen 1 TPVSSAMQSVSWLQALLSGLSDEPSEELLRIFKSCSRDPTESILKRVKQLLEKFCQKYTEAEGEQSSNSDFAEQRFNLAE 80 (194)
T ss_dssp -HHHHHHHHHHHHHHHHHHS-SS--HHHHHHHHTSSS--HHHHHHHHHHHHHHHHHHHHHHHSGG--GHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHH
Confidence 89999999999999 9999999999999999999999999999999999999999999865443 6789999999999
Q ss_pred HHHHHHHHHHHHHHhhcc-ccchHhhhchhHHHHHHHHHHHHHHHHHhcCC--CchhHHhhcCCCccchhhhhhhhhccC
Q psy9485 102 CLYYKLLESILADEQKKP-AYDFNVLLSLQIFHETLFACCIEIVIFCYNSN--SFPWILSVLGIEPYHFYKVIEWLLTPN 178 (190)
Q Consensus 102 ~LYY~~LE~Il~~E~kr~-~~~ls~LL~~~~FhrsLlACclEiVl~sy~~~--~FPwiL~~~~i~af~f~KVIE~~Vr~~ 178 (190)
+|||++||+||.+|.+|+ +.|++.||+|+.||+||+|||+|||+|+|++. .|||||++|+|+|||||||||+||||+
T Consensus 81 ~LYY~~LE~Il~~E~~r~~~~~ls~LL~~~~FhrsL~ACclEiVl~sy~~~~~~FPwiL~~~~i~~f~f~KvIE~~Vr~~ 160 (194)
T PF01858_consen 81 KLYYKVLEKILKAEEKRLPTNDLSSLLSQEIFHRSLLACCLEIVLFSYKSVSLSFPWILEVFDIHPFDFYKVIESFVRHE 160 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHSCSHHHHHHT-HHHHHHHHHHHHHHHHHHTCTSSSSTTHHHHHTT--HHHHHTTHHHHHHH-
T ss_pred HHHHHHHHHHHHHHhccccHhHHHHHhhhhHHHHHHHHHHHHHHHHHcCCCCCcchHHHHhcCCChhhHhhHHHHHHHcc
Confidence 999999999999999999 88999999999999999999999999999965 999999999999999999999999999
Q ss_pred CCCCC
Q psy9485 179 PEVLG 183 (190)
Q Consensus 179 ~~Lp~ 183 (190)
++|||
T Consensus 161 ~~Lpr 165 (194)
T PF01858_consen 161 DGLPR 165 (194)
T ss_dssp TT--H
T ss_pred ccCCH
Confidence 99987
No 2
>KOG1010|consensus
Probab=100.00 E-value=3e-55 Score=416.09 Aligned_cols=178 Identities=36% Similarity=0.641 Sum_probs=171.0
Q ss_pred CCCCCCCCCCCCCccCCCCCCCChhhHHHHHHHHHH-hhcCCCCCCcHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhhh
Q psy9485 4 TPRTPLTGRHYLSKRDLEYGNVTPVKTATQSISRLN-LLCGRDPNPSPALTRIFEACNKNPQPLIDSVLTNLGDKFTQHY 82 (190)
Q Consensus 4 ~p~TPLtgr~yl~~~~~~~~~~TPvs~a~~s~~~L~-ll~~~~~~PS~~L~~~~~~c~~~p~~~I~~rv~~l~~~f~~~~ 82 (190)
.+++|+||++|..+.+. ..|||++||++++||+ ++.|.++.||++|.++|++|++||++.|.+|+++|+++|++++
T Consensus 379 ~~~p~~~~~~y~~e~~~---~~tPvsta~~sik~l~t~i~g~~~~psdkLe~~~~tc~r~p~e~Il~r~~~i~e~~~q~f 455 (920)
T KOG1010|consen 379 KKSPPHTGVRYNLELGN---YPTPVSTATNSIKQLMTILNGLKKEPSDKLEQYLNTCSRDPTESILKRLKEIFEIFEQKF 455 (920)
T ss_pred ccCCCCccccccccccc---CCCcchhHHHHHHHHHHHHhccccCCcHHHHHHHhhcccChHHHHHHHHHHHHHHHHHHh
Confidence 58999999999999999 8999999999999999 9999999999999999999999999999999999999999999
Q ss_pred hcCCC---CchHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-ccchHhhhchhHHHHHHHHHHHHHHHHHhcCC-CchhHH
Q psy9485 83 SASGD---TARDFAEKRLSVAVCLYYKLLESILADEQKKP-AYDFNVLLSLQIFHETLFACCIEIVIFCYNSN-SFPWIL 157 (190)
Q Consensus 83 ~~~~~---~~~d~a~~R~~~a~~LYY~~LE~Il~~E~kr~-~~~ls~LL~~~~FhrsLlACclEiVl~sy~~~-~FPwiL 157 (190)
..+.+ .+.++|.+|+++|+.|||++||+||++|.+|+ +.||++||+|++||+||||||+|+||++|+++ .|||||
T Consensus 456 ~~~~~~g~~~~e~~~~r~k~a~~LYykvLE~il~aE~~rl~~~dl~~LL~q~~Fh~sLlACclElVL~ty~~~l~FPwvl 535 (920)
T KOG1010|consen 456 SAAEGSGNSCIEIASQRFKLAERLYYKVLEKILKAELKRLPDMDLSKLLEQEIFHRSLLACCLELVLATYKTDLSFPWVL 535 (920)
T ss_pred hhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCchhh
Confidence 74332 37899999999999999999999999999999 99999999999999999999999999999999 999999
Q ss_pred hhcCCCccchhhhhhhhhccCCCCCCC
Q psy9485 158 SVLGIEPYHFYKVIEWLLTPNPEVLGS 184 (190)
Q Consensus 158 ~~~~i~af~f~KVIE~~Vr~~~~Lp~~ 184 (190)
++|||+|||||||||+|||||.+|+|.
T Consensus 536 e~~~l~aFdF~KVIE~~IRhE~~L~Re 562 (920)
T KOG1010|consen 536 ECFGLKAFDFYKVIESFIRHEGGLSRE 562 (920)
T ss_pred hhcCCcHHHHHHHHHHHHHhcccccHH
Confidence 999999999999999999999999874
No 3
>PF06972 DUF1296: Protein of unknown function (DUF1296); InterPro: IPR009719 This family represents a conserved region approximately 60 residues long within a number of plant proteins of unknown function.
Probab=72.47 E-value=13 Score=25.50 Aligned_cols=40 Identities=10% Similarity=0.442 Sum_probs=31.3
Q ss_pred HHHHHHHHHH-hhcCCCCCCcHHHHHHHHhcCCChHHHHHHHHH
Q psy9485 30 TATQSISRLN-LLCGRDPNPSPALTRIFEACNKNPQPLIDSVLT 72 (190)
Q Consensus 30 ~a~~s~~~L~-ll~~~~~~PS~~L~~~~~~c~~~p~~~I~~rv~ 72 (190)
.+..+++.++ ++.+ .+-+++..++.+|+.||-+.+...+.
T Consensus 4 ~~rk~VQ~iKEiv~~---hse~eIya~L~ecnMDpnea~qrLL~ 44 (60)
T PF06972_consen 4 ASRKTVQSIKEIVGC---HSEEEIYAMLKECNMDPNEAVQRLLS 44 (60)
T ss_pred HHHHHHHHHHHHhcC---CCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 3456788888 6554 67788999999999999988877654
No 4
>PF06292 DUF1041: Domain of Unknown Function (DUF1041); InterPro: IPR010439 This entry represents Calcium-dependent secretion activators that are involved in the exocytosis of vesicles filled with neurotransmitters and neuropeptides. They also may specifically mediate the Ca2+-dependent exocytosis of large dense-core vesicles (DCVs) and other dense-core vesicles by acting as a PtdIns(4,5)P2-binding protein that acts at prefusion step following ATP-dependent priming and participates in DCVs-membrane fusion []. However, it probably also participates in small clear synaptic vesicles (SVs) exocytosis and it is unclear whether its function is related to Ca2+ triggering []. This protein is often found in tandem repeats and co-occur with C2 domains IPR000008 from INTERPRO, Protein kinase C, phorbol ester/diacylglycerol binding regions IPR002219 from INTERPRO and PH domains IPR001849 from INTERPRO.
Probab=47.09 E-value=49 Score=25.06 Aligned_cols=78 Identities=18% Similarity=0.250 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcc-c-------cchHhhhchhHHHHHHHHHHHHHHHH---HhcCC--CchhHHhh
Q psy9485 93 AEKRLSVAVCLYYKLLESILADEQKKP-A-------YDFNVLLSLQIFHETLFACCIEIVIF---CYNSN--SFPWILSV 159 (190)
Q Consensus 93 a~~R~~~a~~LYY~~LE~Il~~E~kr~-~-------~~ls~LL~~~~FhrsLlACclEiVl~---sy~~~--~FPwiL~~ 159 (190)
..++.+.|...-|..+=.=+..|-.|. + .+...=..+=.|+--|..+|++|+=- .|.+. .|||-+++
T Consensus 4 Vr~Cle~aa~~nY~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~k~Le~w~~L~eL~v~vleed~e~y~~vln~F~~~~~l 83 (106)
T PF06292_consen 4 VRKCLEAAALSNYQRIFENCKEEYNRQFQQKEDVGPEEQGPPIKKLEFWIRLIELCVSVLEEDKEHYAPVLNQFPWELDL 83 (106)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhhcccccccCccCCCChhHhHHHHHHHHHHHHHHHHhhhhhhhhHhhhchhhhhH
Confidence 344555555555555444344443322 1 11111234458899999999998864 45555 99999999
Q ss_pred cCCCccchhhh
Q psy9485 160 LGIEPYHFYKV 170 (190)
Q Consensus 160 ~~i~af~f~KV 170 (190)
+.++|-.|+..
T Consensus 84 ~~~hAE~fWsL 94 (106)
T PF06292_consen 84 GVEHAEIFWSL 94 (106)
T ss_pred HHHHHHHHHHH
Confidence 99999877653
No 5
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=32.02 E-value=81 Score=24.55 Aligned_cols=35 Identities=34% Similarity=0.407 Sum_probs=24.2
Q ss_pred HHHHHHH---HHHHHHHHHHHHHHHHhhcc--ccchHhhh
Q psy9485 93 AEKRLSV---AVCLYYKLLESILADEQKKP--AYDFNVLL 127 (190)
Q Consensus 93 a~~R~~~---a~~LYY~~LE~Il~~E~kr~--~~~ls~LL 127 (190)
+-+|-.. ...+|.+||++|+..+...- +..++.||
T Consensus 50 slkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LL 89 (120)
T PF08579_consen 50 SLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLL 89 (120)
T ss_pred HHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHH
Confidence 5566666 57899999999998777533 23445554
No 6
>PF07340 Herpes_IE1: Cytomegalovirus IE1 protein; InterPro: IPR010855 Expression from a human cytomegalovirus early promoter (E1.7) has been shown to be activated in trans by the IE2 gene product. Although the IE1 gene product alone had no effect on this early viral promoter, maximal early promoter activity was detected when both IE1 and IE2 gene products were present []. The IE1 protein from cytomegalovirus is also known as UL123.; GO: 0050792 regulation of viral reproduction, 0042025 host cell nucleus
Probab=30.64 E-value=4.5e+02 Score=24.48 Aligned_cols=42 Identities=21% Similarity=0.376 Sum_probs=28.4
Q ss_pred ChhhHHHHHHHHHH--hh-----------cCCCCCCcHHHHHHHHhcCCChHHHH
Q psy9485 26 TPVKTATQSISRLN--LL-----------CGRDPNPSPALTRIFEACNKNPQPLI 67 (190)
Q Consensus 26 TPvs~a~~s~~~L~--ll-----------~~~~~~PS~~L~~~~~~c~~~p~~~I 67 (190)
+||+.|.+-..++- -+ ..-+..|.-.+.++.++|.+||...|
T Consensus 28 ~pv~~A~~fLek~l~~E~~~~lsLGDPLf~~~~~~~~kt~e~i~~e~~~~p~~~~ 82 (392)
T PF07340_consen 28 DPVTRAVQFLEKMLADETNTQLSLGDPLFPDVSEDPFKTFEDIINECDDNPGKDV 82 (392)
T ss_pred ChHHHHHHHHHHHHHHHHhcccccCCCCCCCCCCCchhhHHHHHhcCCCChHHHH
Confidence 89877666444421 11 11135677789999999999998885
No 7
>TIGR03338 phnR_burk phosphonate utilization associated transcriptional regulator. This family of proteins are members of the GntR family (pfam00392) containing an N-terminal helix-turn-helix (HTH) motif. This clade is found adjacent to or inside of operons for the degradation of 2-aminoethylphosphonate (AEP) in Polaromonas, Burkholderia, Ralstonia and Verminephrobacter.
Probab=30.37 E-value=2.3e+02 Score=22.65 Aligned_cols=49 Identities=12% Similarity=0.146 Sum_probs=31.6
Q ss_pred ChhhHHHHHHHHHH--hhcCCC----CCCcHHHHHHHHhcCCChHHHHHHHHHHHH
Q psy9485 26 TPVKTATQSISRLN--LLCGRD----PNPSPALTRIFEACNKNPQPLIDSVLTNLG 75 (190)
Q Consensus 26 TPvs~a~~s~~~L~--ll~~~~----~~PS~~L~~~~~~c~~~p~~~I~~rv~~l~ 75 (190)
++-+.+.+....|+ +++|.. ..|..+|.+.| ..+++|.-.-..++...|
T Consensus 8 ~~~~~~~~v~~~l~~~I~~g~l~pG~~L~e~~La~~l-gVSRtpVReAL~~L~~eG 62 (212)
T TIGR03338 8 QSSSLTTLVQDEIERAILSGELPPGAKLNESDIAARL-GVSRGPVREAFRALEEAG 62 (212)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCCCCCEecHHHHHHHh-CCChHHHHHHHHHHHHCC
Confidence 34455566777888 677751 22555677766 678888877777776544
No 8
>PF08630 Dfp1_Him1_M: Dfp1/Him1, central region; InterPro: IPR013939 This region, together with the C-terminal zinc finger (IPR006572 from INTERPRO) is essential for the mitotic and kinase activation functions of Dfp1/Him1 []. ; PDB: 3OQ0_J 3OQ4_D 3QBZ_A.
Probab=28.12 E-value=39 Score=26.38 Aligned_cols=15 Identities=27% Similarity=0.335 Sum_probs=8.6
Q ss_pred ccchHhhhchhHHHH
Q psy9485 120 AYDFNVLLSLQIFHE 134 (190)
Q Consensus 120 ~~~ls~LL~~~~Fhr 134 (190)
..+|++||.+|..|-
T Consensus 46 ~~~L~~LL~~Ek~~G 60 (125)
T PF08630_consen 46 EPDLSQLLQNEKLHG 60 (125)
T ss_dssp --HHHHHHHHH----
T ss_pred cchHHHHHHhhhhhC
Confidence 559999999999864
No 9
>PF06971 Put_DNA-bind_N: Putative DNA-binding protein N-terminus; InterPro: IPR009718 This entry represents the C terminus (approximately 30 residues) of a number of Rex proteins. These are redox-sensing repressors that appear to be widespread among Gram-positive bacteria []. They modulate transcription in response to changes in cellular NADH/NAD(+) redox state. Rex is predicted to include a pyridine nucleotide-binding domain (Rossmann fold), and residues that might play key structural and nucleotide binding roles are highly conserved.; GO: 0045892 negative regulation of transcription, DNA-dependent, 0051775 response to redox state, 0005737 cytoplasm; PDB: 3IL2_B 3IKT_A 3IKV_B 1XCB_F 2DT5_A 2VT3_A 2VT2_A 3KEO_B 3KET_A 3KEQ_A ....
Probab=27.02 E-value=39 Score=22.12 Aligned_cols=25 Identities=16% Similarity=0.309 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHhhcc-ccchHhh
Q psy9485 102 CLYYKLLESILADEQKKP-AYDFNVL 126 (190)
Q Consensus 102 ~LYY~~LE~Il~~E~kr~-~~~ls~L 126 (190)
.+||++|+.+-.....+. ...|...
T Consensus 12 ~~Y~r~L~~l~~~G~~~vSS~~La~~ 37 (50)
T PF06971_consen 12 PLYLRYLEQLKEEGVERVSSQELAEA 37 (50)
T ss_dssp HHHHHHHHHHHHTT-SEE-HHHHHHH
T ss_pred HHHHHHHHHHHHcCCeeECHHHHHHH
Confidence 589999999988777666 4455444
No 10
>PF03474 DMA: DMRTA motif; InterPro: IPR005173 This region is found to the C terminus of the DM DNA-binding domain IPR001275 from INTERPRO []. DM-domain proteins with this motif are known as DMRTA proteins. The function of this region is unknown.
Probab=25.65 E-value=95 Score=19.48 Aligned_cols=26 Identities=19% Similarity=0.336 Sum_probs=20.1
Q ss_pred CCCCcHHHHHHHHhcCCChHHHHHHH
Q psy9485 45 DPNPSPALTRIFEACNKNPQPLIDSV 70 (190)
Q Consensus 45 ~~~PS~~L~~~~~~c~~~p~~~I~~r 70 (190)
+....+.|..+++.|..|....|..-
T Consensus 13 P~~kr~~Le~iL~~C~GDvv~AIE~~ 38 (39)
T PF03474_consen 13 PHQKRSVLELILQRCNGDVVQAIEQF 38 (39)
T ss_pred CCCChHHHHHHHHHcCCcHHHHHHHh
Confidence 34555669999999999998888753
No 11
>cd08800 Death_UNC5A Death domain found in Uncoordinated-5A. Death Domain (DD) found in Uncoordinated-5A (UNC5A). UNC5A is part of the UNC-5 homolog family. It is a receptor for the secreted netrin-1 and plays a critical role in neuronal development and differentiation, as well as axon-guidance. It also plays a role in regulating apoptosis in non-neuronal cells as a downstream target of p53. UNC5 proteins are transmembrane proteins with an extracellular domain consisting of two immunoglobulin repeats, two thrombospondin type-I modules and an intracellular region containing a ZU-5 domain, UPA domain and a DD. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathway
Probab=24.41 E-value=1e+02 Score=22.45 Aligned_cols=32 Identities=16% Similarity=0.369 Sum_probs=23.4
Q ss_pred CCCCcHHHHHHHHhcCCC--hHHHHHHHHHHHHH
Q psy9485 45 DPNPSPALTRIFEACNKN--PQPLIDSVLTNLGD 76 (190)
Q Consensus 45 ~~~PS~~L~~~~~~c~~~--p~~~I~~rv~~l~~ 76 (190)
+..|+..|.++.+.|.++ -...+.+.+.+||.
T Consensus 42 ~pSPT~~LLd~WEa~~~~~g~l~~L~~~l~emGR 75 (84)
T cd08800 42 KSSPTAVILNLWEAQHFPNGNLNQLAAVVAEIGK 75 (84)
T ss_pred CCChHHHHHHHHHhccCCCCcHHHHHHHHHHhCc
Confidence 578999999999876322 25777777777774
No 12
>PF14891 Peptidase_M91: Effector protein
Probab=24.30 E-value=39 Score=27.17 Aligned_cols=31 Identities=16% Similarity=0.129 Sum_probs=27.3
Q ss_pred HHhhcCCCccchh---hhhhhhhccCCCCCCCCc
Q psy9485 156 ILSVLGIEPYHFY---KVIEWLLTPNPEVLGSNS 186 (190)
Q Consensus 156 iL~~~~i~af~f~---KVIE~~Vr~~~~Lp~~~~ 186 (190)
=++.-||..|++- .+-|--+|.|.+||.|..
T Consensus 140 E~~avGL~~y~~~~~p~~tEN~lR~E~Glp~R~~ 173 (174)
T PF14891_consen 140 ELRAVGLPKYDHDNDPPFTENALREEHGLPLRTH 173 (174)
T ss_pred hhhhcCCCCCCcccccccChHHHHHHcCCCccCC
Confidence 4677899999999 789999999999999863
No 13
>KOG1242|consensus
Probab=22.61 E-value=4.1e+02 Score=26.03 Aligned_cols=69 Identities=12% Similarity=0.004 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcc-ccchHhhh--chhHHHHHHHHHHHHHHHHHhc---CC----CchhHHhhcC
Q psy9485 93 AEKRLSVAVCLYYKLLESILADEQKKP-AYDFNVLL--SLQIFHETLFACCIEIVIFCYN---SN----SFPWILSVLG 161 (190)
Q Consensus 93 a~~R~~~a~~LYY~~LE~Il~~E~kr~-~~~ls~LL--~~~~FhrsLlACclEiVl~sy~---~~----~FPwiL~~~~ 161 (190)
...|...+..+.+.+-..++.++.+.. -.+++..+ .+..+||-...-+.|.....-+ .+ .||.|+..|+
T Consensus 148 ~~~~~~aa~~~ag~v~g~~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~ 226 (569)
T KOG1242|consen 148 IAERAGAAYGLAGLVNGLGIESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFG 226 (569)
T ss_pred HHHHhhhhHHHHHHHcCcHHhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhh
Confidence 567889999999999999999998877 33444444 3467888666666776665443 22 6899988883
No 14
>PRK13713 conjugal transfer protein TraM; Provisional
Probab=20.22 E-value=4.2e+02 Score=20.56 Aligned_cols=72 Identities=15% Similarity=0.248 Sum_probs=47.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHhhhchhHHHHHHHHHHHHHHHHHh---cCC-CchhHHhhcCCCc
Q psy9485 89 ARDFAEKRLSVAVCLYYKLLESILADEQKKPAYDFNVLLSLQIFHETLFACCIEIVIFCY---NSN-SFPWILSVLGIEP 164 (190)
Q Consensus 89 ~~d~a~~R~~~a~~LYY~~LE~Il~~E~kr~~~~ls~LL~~~~FhrsLlACclEiVl~sy---~~~-~FPwiL~~~~i~a 164 (190)
..+.+.-...++.+.|---+| |++.. .+|+.|++-||-||+..-..+- +.+ .=|. +-+.+-
T Consensus 28 ~SSv~sMLLELGLRVYeaQ~e--------rkes~----Fnq~eFnK~lLE~v~kt~~~~~~IL~~~~lsp~---v~~~~~ 92 (118)
T PRK13713 28 FSSVASMLLELGLRVYEAQME--------RKESG----FNQTEFNKLLLECVVKTQSTVAKILGIESLSPH---VSGNPK 92 (118)
T ss_pred HHHHHHHHHHHhHHHHHHHHH--------hhcCc----ccHHHHHHHHHHHHHHHHHHHHHHHccccccHh---hcCCCc
Confidence 445777788888888854332 23222 4799999999999998844433 233 3333 346667
Q ss_pred cchhhhhhhhh
Q psy9485 165 YHFYKVIEWLL 175 (190)
Q Consensus 165 f~f~KVIE~~V 175 (190)
|++.++|+.+=
T Consensus 93 ~ey~~mv~~I~ 103 (118)
T PRK13713 93 FEYANMVEDIR 103 (118)
T ss_pred ccHHHHHHHHH
Confidence 88888887653
Done!