Query psy9485
Match_columns 190
No_of_seqs 105 out of 148
Neff 6.0
Searched_HMMs 29240
Date Fri Aug 16 20:36:57 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9485.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9485hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4elj_A Retinoblastoma-associat 100.0 1.3E-53 4.6E-58 402.1 15.4 177 7-183 281-472 (656)
2 4ell_A Retinoblastoma-associat 100.0 2.1E-52 7.2E-57 376.9 11.8 154 30-183 1-168 (411)
3 2r7g_A PP110, retinoblastoma-a 100.0 4.6E-49 1.6E-53 349.0 11.7 151 33-183 1-165 (347)
4 3f1i_S STAM-1, signal transduc 28.2 1.5E+02 0.005 20.4 5.5 44 65-108 30-75 (77)
5 3q5w_A Protein CUT8; proteasom 26.6 96 0.0033 25.8 5.2 86 23-109 50-139 (245)
6 3on0_A Protein TRAM; DNA bindi 25.3 2.1E+02 0.0073 21.3 8.1 71 89-174 33-107 (127)
7 3t97_B Nuclear pore complex pr 21.0 1.9E+02 0.0065 19.2 6.5 30 93-123 34-64 (65)
8 1tue_B Regulatory protein E2; 17.8 2.6E+02 0.0089 22.7 6.0 27 62-88 6-32 (218)
9 3fwc_B Nuclear mRNA export pro 17.4 1.4E+02 0.0049 20.6 3.8 41 107-147 26-68 (85)
10 2nnu_A Regulatory protein E2; 16.7 2.8E+02 0.0097 22.3 5.9 25 64-88 5-29 (205)
No 1
>4elj_A Retinoblastoma-associated protein; cyclin fold, tumor suppressor protein, phosphorylation, cell; HET: TPO; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.3e-53 Score=402.12 Aligned_cols=177 Identities=31% Similarity=0.573 Sum_probs=153.3
Q ss_pred CCCCCCCCCCccC-CCCCCCChhhHHHHHHHHHH-hhcCCCCCCcHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhhhhc
Q psy9485 7 TPLTGRHYLSKRD-LEYGNVTPVKTATQSISRLN-LLCGRDPNPSPALTRIFEACNKNPQPLIDSVLTNLGDKFTQHYSA 84 (190)
Q Consensus 7 TPLtgr~yl~~~~-~~~~~~TPvs~a~~s~~~L~-ll~~~~~~PS~~L~~~~~~c~~~p~~~I~~rv~~l~~~f~~~~~~ 84 (190)
+|.|+|+|++..+ ...++.||||+||++++||+ +|+|.++.||++|.++|++|++||++.|.+||++|++.|.++|++
T Consensus 281 ~~~tP~k~~~~~~~~~~p~~TPVs~A~~si~~L~~~l~~~~~~PS~~L~~~f~~C~~dp~~~I~~rv~~l~~~F~~~~~~ 360 (656)
T 4elj_A 281 TQRTPRKSNLDEEVNVIPPHTPVRTVMNTIQQLMMILNSASDQPSENLISYFNNCTVNPKESILKRVKDIGYIFKEKFAK 360 (656)
T ss_dssp ------------------CCCHHHHHHHHHHHHHHHTTTCCSSCCHHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCccCCcccccCCCCCCchHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHhcc
Confidence 3456699987432 22235699999999999999 999999999999999999999999999999999999999999986
Q ss_pred CCCC-chHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-ccchHhhhchhHHHHHHHHHHHHHHHHHhcC----------C-
Q psy9485 85 SGDT-ARDFAEKRLSVAVCLYYKLLESILADEQKKP-AYDFNVLLSLQIFHETLFACCIEIVIFCYNS----------N- 151 (190)
Q Consensus 85 ~~~~-~~d~a~~R~~~a~~LYY~~LE~Il~~E~kr~-~~~ls~LL~~~~FhrsLlACclEiVl~sy~~----------~- 151 (190)
..|. ..++|++|+++|++||||+||+||.+|.+|+ +.|++.||+|+.||+||+|||+|||+|+|++ +
T Consensus 361 ~~g~~~~~~a~~R~~la~~LYYkvLE~Il~~E~~rl~~~~ls~LL~~~~Fh~sLlACclEvVl~~y~~~~~~~~~~~~~~ 440 (656)
T 4elj_A 361 AVGQGCVEIGSQRYKLGVRLYYRVMESMLKSEEERLSIQNFSKLLNDNIFHMSLLACALEVVMATYSRSTSQNLDSGTDL 440 (656)
T ss_dssp HHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSCCHHHHHCHHHHHHHHHHHHHHHHHHHSCCCC----CCCSS
T ss_pred ccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHhhhhHHHHHHHHHHHHHHHHHhcccccccccccccc
Confidence 5554 5689999999999999999999999999999 8899999999999999999999999999985 5
Q ss_pred CchhHHhhcCCCccchhhhhhhhhccCCCCCC
Q psy9485 152 SFPWILSVLGIEPYHFYKVIEWLLTPNPEVLG 183 (190)
Q Consensus 152 ~FPwiL~~~~i~af~f~KVIE~~Vr~~~~Lp~ 183 (190)
.|||||++|+|+|||||||||+||||+++|||
T Consensus 441 ~FPwiL~~~~i~afdf~KVIE~fvr~e~~L~r 472 (656)
T 4elj_A 441 SFPWILNVLNLKAFDFYKVIESFIKAEGNLTR 472 (656)
T ss_dssp STTHHHHHTTCCHHHHHHHHHHHHHHCTTCCH
T ss_pred CCcHHHHhcCCcHHHHHhhhhhheeccCCCCH
Confidence 99999999999999999999999999999996
No 2
>4ell_A Retinoblastoma-associated protein; cyclin fold, tumor suppressor, cell cycle; 1.98A {Homo sapiens}
Probab=100.00 E-value=2.1e-52 Score=376.91 Aligned_cols=154 Identities=31% Similarity=0.628 Sum_probs=139.8
Q ss_pred HHHHHHHHHH-hhcCCCCCCcHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhhhhcCCCC-chHHHHHHHHHHHHHHHHH
Q psy9485 30 TATQSISRLN-LLCGRDPNPSPALTRIFEACNKNPQPLIDSVLTNLGDKFTQHYSASGDT-ARDFAEKRLSVAVCLYYKL 107 (190)
Q Consensus 30 ~a~~s~~~L~-ll~~~~~~PS~~L~~~~~~c~~~p~~~I~~rv~~l~~~f~~~~~~~~~~-~~d~a~~R~~~a~~LYY~~ 107 (190)
.||++++||+ +|+|.++.||++|.++|++|++||++.|.+||++|++.|.++|++..|. +.++|++|+++|++|||++
T Consensus 1 ~~~~s~~~L~~~l~~~~~~PS~~L~~~f~sC~~dp~~~I~~rv~~l~~~F~~~~~~~~~~~~~~~a~~R~~la~~LYY~~ 80 (411)
T 4ell_A 1 GEFNTIQQLMMILNSASDQPSENLISYFNNCTVNPKESILKRVKDIGYIFKEKFAKAVGQGCVEIGSQRYKLGVRLYYRV 80 (411)
T ss_dssp ------CHHHHHHHHSCSSCCHHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHhcCCCCCCCHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhhcccCccchhHHHHHHHHHHHHHHHH
Confidence 3899999999 9999999999999999999999999999999999999999999865554 5589999999999999999
Q ss_pred HHHHHHHHhhcc-ccchHhhhchhHHHHHHHHHHHHHHHHHhcC----------C-CchhHHhhcCCCccchhhhhhhhh
Q psy9485 108 LESILADEQKKP-AYDFNVLLSLQIFHETLFACCIEIVIFCYNS----------N-SFPWILSVLGIEPYHFYKVIEWLL 175 (190)
Q Consensus 108 LE~Il~~E~kr~-~~~ls~LL~~~~FhrsLlACclEiVl~sy~~----------~-~FPwiL~~~~i~af~f~KVIE~~V 175 (190)
||+||.+|.+|+ +.|++.||+||.||+||+|||+|||+|+|++ + .|||||++|+|+|||||||||+||
T Consensus 81 LE~Il~~E~~rl~~~~~s~LL~~~~Fh~sLlACclEvVl~~y~~~~~~~~~~~~~~~FPwiL~~~~i~afdf~KVIE~fv 160 (411)
T 4ell_A 81 MESMLKSEEERLSIQNFSKLLNDNIFHMSLLACALEVVMATYSRSTSQNLDSGTDLSFPWILNVLNLKAFDFYKVIESFI 160 (411)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC------------CCTTHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccchHHHHhhhHHHHHHHHHHHHHHHHHHhccccccccccccCcCChHHHHhcCCChhhhhhhhHHhh
Confidence 999999999999 8899999999999999999999999999986 6 999999999999999999999999
Q ss_pred ccCCCCCC
Q psy9485 176 TPNPEVLG 183 (190)
Q Consensus 176 r~~~~Lp~ 183 (190)
|||++|||
T Consensus 161 r~e~~L~r 168 (411)
T 4ell_A 161 KAEGNLTR 168 (411)
T ss_dssp HHCTTCCH
T ss_pred hccCCCCH
Confidence 99999986
No 3
>2r7g_A PP110, retinoblastoma-associated protein, P105-RB, RB; retinoblastoma protein, E2F displacement, transcription repressor; 1.67A {Homo sapiens} SCOP: a.74.1.3 a.74.1.3 PDB: 1n4m_A 3pom_A 1gh6_B 1gux_A 1o9k_A 1ad6_A 1gux_B 1o9k_B
Probab=100.00 E-value=4.6e-49 Score=349.05 Aligned_cols=151 Identities=32% Similarity=0.647 Sum_probs=143.2
Q ss_pred HHHHHHH-hhcCCCCCCcHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhhhhcCCCC-chHHHHHHHHHHHHHHHHHHHH
Q psy9485 33 QSISRLN-LLCGRDPNPSPALTRIFEACNKNPQPLIDSVLTNLGDKFTQHYSASGDT-ARDFAEKRLSVAVCLYYKLLES 110 (190)
Q Consensus 33 ~s~~~L~-ll~~~~~~PS~~L~~~~~~c~~~p~~~I~~rv~~l~~~f~~~~~~~~~~-~~d~a~~R~~~a~~LYY~~LE~ 110 (190)
++++||+ +++|.++.||++|.++|++|++||++.|.+||++|++.|.+++.+..|. ..++|++|+.+|++|||++||+
T Consensus 1 ~~~~~L~~~~~~~~~~Ps~~L~~~~~~C~~~p~~~i~~rv~~l~~~f~~~~~~~~~~~~~~~~~~R~~~a~~LYY~vLe~ 80 (347)
T 2r7g_A 1 NTIQQLMMILNSASDQPSENLISYFNNCTVNPKESILKRVKDIGYIFKEKFAKAVGQGCVEIGSQRYKLGVRLYYRVMES 80 (347)
T ss_dssp CCHHHHHHHHHHSCSSCCHHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhcCCCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhccCcccchHHHHHHHHHHHHHHHHHHH
Confidence 3689999 9999999999999999999999999999999999999999999865444 5689999999999999999999
Q ss_pred HHHHHhhcc-ccchHhhhchhHHHHHHHHHHHHHHHHHhcC----------C-CchhHHhhcCCCccchhhhhhhhhccC
Q psy9485 111 ILADEQKKP-AYDFNVLLSLQIFHETLFACCIEIVIFCYNS----------N-SFPWILSVLGIEPYHFYKVIEWLLTPN 178 (190)
Q Consensus 111 Il~~E~kr~-~~~ls~LL~~~~FhrsLlACclEiVl~sy~~----------~-~FPwiL~~~~i~af~f~KVIE~~Vr~~ 178 (190)
||.+|.+|+ +.|++.||++|.||+||+|||+|+|+++|++ + .|||||++|||+|||||||||+|||||
T Consensus 81 Il~~E~~r~~~~~~s~LL~~~~Fh~sLlACc~EiVl~ay~~~~~~~~~~~~~~~FP~il~~~~i~afdf~KVIE~fVr~e 160 (347)
T 2r7g_A 81 MLKSEEERLSIQNFSKLLNDNIFHMSLLACALEVVMATYSRSTSQNLDSGTDLSFPWILNVLNLKAFDFYKVIESFIKAE 160 (347)
T ss_dssp HHHHHHHHHTSCCCHHHHTCHHHHHHHHHHHHHHHHHHHHHHC------CCCCCTTHHHHHHTCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhcCcchHHHHhchHHHHHHHHHHHHHHHHHHhcccccccccccccCCCcHHHHhcCCChHHHHHHHHHHHhcc
Confidence 999999999 8899999999999999999999999999963 6 999999999999999999999999999
Q ss_pred CCCCC
Q psy9485 179 PEVLG 183 (190)
Q Consensus 179 ~~Lp~ 183 (190)
++|||
T Consensus 161 ~~Lpr 165 (347)
T 2r7g_A 161 GNLTR 165 (347)
T ss_dssp TTCCH
T ss_pred ccCCH
Confidence 99996
No 4
>3f1i_S STAM-1, signal transducing adapter molecule 1; HGS, ESCRT, ubiquitin, MVB, endosome, membrane, metal- phosphoprotein, protein transport, transport; 2.30A {Homo sapiens}
Probab=28.18 E-value=1.5e+02 Score=20.37 Aligned_cols=44 Identities=14% Similarity=0.289 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHhhhhcCCCCchHH--HHHHHHHHHHHHHHHH
Q psy9485 65 PLIDSVLTNLGDKFTQHYSASGDTARDF--AEKRLSVAVCLYYKLL 108 (190)
Q Consensus 65 ~~I~~rv~~l~~~f~~~~~~~~~~~~d~--a~~R~~~a~~LYY~~L 108 (190)
-.+..++..||..+..+...-.-.+.++ -..+..+|..||+++|
T Consensus 30 ~~LE~~c~~MgplId~kLE~iDrkh~~Lteln~~~leaL~lY~~lM 75 (77)
T 3f1i_S 30 LHLEAMCHQMGPLIDEKLEDIDRKHSELSELNVKVMEALSLYTKLM 75 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456667777766665553110002332 2457888999999887
No 5
>3q5w_A Protein CUT8; proteasome, tether, chromosome, cell cycle, dimer, NOVE; 2.75A {Schizosaccharomyces pombe} PDB: 3q5x_A
Probab=26.55 E-value=96 Score=25.79 Aligned_cols=86 Identities=20% Similarity=0.218 Sum_probs=54.5
Q ss_pred CCCChhhHHHHH--HHHHH-hhcCCCCCCcHHHHHHHHhcCCChH-HHHHHHHHHHHHHHHhhhhcCCCCchHHHHHHHH
Q psy9485 23 GNVTPVKTATQS--ISRLN-LLCGRDPNPSPALTRIFEACNKNPQ-PLIDSVLTNLGDKFTQHYSASGDTARDFAEKRLS 98 (190)
Q Consensus 23 ~~~TPvs~a~~s--~~~L~-ll~~~~~~PS~~L~~~~~~c~~~p~-~~I~~rv~~l~~~f~~~~~~~~~~~~d~a~~R~~ 98 (190)
|+.-|++...++ -++|+ +|.+.- .-.++|.+-+.+-.+.|+ +...+.+++..+++..++.-.++...|+|-.|-+
T Consensus 50 GqpLPL~RlLEtLdk~qL~sLL~~L~-~~HPel~qeI~~~~P~Psl~~al~~L~~~~~~i~~a~PY~~~~~dDYaY~RVK 128 (245)
T 3q5w_A 50 GEQLPLSRLLQYSDKQQLFTILLQCV-EKHPDLARDIRGILPAPSMDTCVETLRKLLINLNDSFPYGGDKRGDYAFNRIR 128 (245)
T ss_dssp CCCCCHHHHTTSSCHHHHHHHHHHHH-HHCTHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHHTSCSSSCTTSHHHHHHHH
T ss_pred CCCCCHHHHHHhCCHHHHHHHHHHHH-HhCchHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhCCCCCCCccchhHHHHH
Confidence 344577766664 55666 655431 122336666666555553 7788888888888888886333336788888888
Q ss_pred HHHHHHHHHHH
Q psy9485 99 VAVCLYYKLLE 109 (190)
Q Consensus 99 ~a~~LYY~~LE 109 (190)
-...=|-..|.
T Consensus 129 ~~L~eFl~~L~ 139 (245)
T 3q5w_A 129 EKYMAVLHALN 139 (245)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77766665554
No 6
>3on0_A Protein TRAM; DNA binding protein, DNA protein-DNA complex, tetramer, COOP binding, unwinding of DNA, kinking of DNA; 2.87A {Escherichia coli}
Probab=25.28 E-value=2.1e+02 Score=21.34 Aligned_cols=71 Identities=6% Similarity=0.181 Sum_probs=44.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHhhhchhHHHHHHHHHHHHHHHHHhc---CCCc-hhHHhhcCCCc
Q psy9485 89 ARDFAEKRLSVAVCLYYKLLESILADEQKKPAYDFNVLLSLQIFHETLFACCIEIVIFCYN---SNSF-PWILSVLGIEP 164 (190)
Q Consensus 89 ~~d~a~~R~~~a~~LYY~~LE~Il~~E~kr~~~~ls~LL~~~~FhrsLlACclEiVl~sy~---~~~F-PwiL~~~~i~a 164 (190)
..+.+.-...++.+.|- .+.|.| .+-.+++.|+|-|+-||+..-..+-. ...| |.+-.- +-
T Consensus 33 ~SSv~smLlELGLrVY~------~Q~E~k------~s~Fnq~~Fnk~lLe~v~ks~~~~~~il~~~~ls~~v~~~---~~ 97 (127)
T 3on0_A 33 LSNVSSMLLELGLRVYM------IQQEKR------EGGFNQMEYNKLMLENVSRVRAMCTEILKMSVLNQESIAS---GN 97 (127)
T ss_dssp HHHHHHHHHHHHHHHHH------HHHCC----------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHH---TC
T ss_pred HHHHHHHHHHHhHHHHH------HHHhhc------cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccHhhccC---cc
Confidence 45577778888988886 333333 23347899999999999876654332 1133 554433 56
Q ss_pred cchhhhhhhh
Q psy9485 165 YHFYKVIEWL 174 (190)
Q Consensus 165 f~f~KVIE~~ 174 (190)
|++.++++.+
T Consensus 98 ~ey~~m~~~I 107 (127)
T 3on0_A 98 FDYAVIKPAI 107 (127)
T ss_dssp CCHHHHHHHH
T ss_pred ccHHHHHHHH
Confidence 7777776654
No 7
>3t97_B Nuclear pore complex protein NUP54; nucleoporin, coiled-coil, nuclear pore complex, central TRAN channel, alpha helical proteins, triple helix; 2.80A {Rattus norvegicus}
Probab=21.01 E-value=1.9e+02 Score=19.15 Aligned_cols=30 Identities=17% Similarity=0.293 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcc-ccch
Q psy9485 93 AEKRLSVAVCLYYKLLESILADEQKKP-AYDF 123 (190)
Q Consensus 93 a~~R~~~a~~LYY~~LE~Il~~E~kr~-~~~l 123 (190)
++.|++ -..|.+++|+-|+.+|.-|+ |..+
T Consensus 34 ~e~krk-l~eLsHRiLkvlv~QE~~rK~G~al 64 (65)
T 3t97_B 34 AQYKRK-LMDLSHRTLQVLIKQEIQRKSGYAI 64 (65)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHH-HHHhHHHHHHHHHHHHHHHHhccCC
Confidence 333444 45699999999999999988 6543
No 8
>1tue_B Regulatory protein E2; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: b.91.1.1
Probab=17.76 E-value=2.6e+02 Score=22.73 Aligned_cols=27 Identities=26% Similarity=0.517 Sum_probs=22.9
Q ss_pred ChHHHHHHHHHHHHHHHHhhhhcCCCC
Q psy9485 62 NPQPLIDSVLTNLGDKFTQHYSASGDT 88 (190)
Q Consensus 62 ~p~~~I~~rv~~l~~~f~~~~~~~~~~ 88 (190)
.+++.+.+|++.+-++....|..+..+
T Consensus 6 t~ME~L~~RldalQe~ll~lyE~dS~~ 32 (218)
T 1tue_B 6 TPKETLSERLSALQDKIIDHYENDSKD 32 (218)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 347889999999999999999876655
No 9
>3fwc_B Nuclear mRNA export protein SAC3; gene gating, complex, calcium, cell cycle, cell division, mitosis, mRNA transport, nuclear pore complex, nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=17.37 E-value=1.4e+02 Score=20.58 Aligned_cols=41 Identities=10% Similarity=0.123 Sum_probs=25.7
Q ss_pred HHHHHHHHHhhcc--ccchHhhhchhHHHHHHHHHHHHHHHHH
Q psy9485 107 LLESILADEQKKP--AYDFNVLLSLQIFHETLFACCIEIVIFC 147 (190)
Q Consensus 107 ~LE~Il~~E~kr~--~~~ls~LL~~~~FhrsLlACclEiVl~s 147 (190)
++++.+....+|. -.+|+.=|=+.-+|..++=|++|.=.-.
T Consensus 26 ~l~~~l~~~~~R~~iI~sLs~eLy~AFihE~lY~~~leskAd~ 68 (85)
T 3fwc_B 26 IVKREFSEANYRKDFIDTMTRELYDAFLHERLYLIYMDSRAEL 68 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555444444 3366666666777888888888865543
No 10
>2nnu_A Regulatory protein E2; protein-peptide complex, helical peptide, three helix bundle, amphipathic helix, transcription; 1.59A {Human papillomavirus type 16} SCOP: b.91.1.1 PDB: 1dto_A
Probab=16.73 E-value=2.8e+02 Score=22.28 Aligned_cols=25 Identities=20% Similarity=0.228 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCCC
Q psy9485 64 QPLIDSVLTNLGDKFTQHYSASGDT 88 (190)
Q Consensus 64 ~~~I~~rv~~l~~~f~~~~~~~~~~ 88 (190)
++.+.+|++.+-++....|..+..+
T Consensus 5 ME~L~~RldalQe~ll~lyE~ds~~ 29 (205)
T 2nnu_A 5 METLCQRLNVCQDKILTHYENDSTD 29 (205)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 7889999999999999999876655
Done!