RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy9485
         (190 letters)



>d2r7ga1 a.74.1.3 (A:380-578) Retinoblastoma tumor suppressor
           domains {Human (Homo sapiens) [TaxId: 9606]}
          Length = 199

 Score =  149 bits (377), Expect = 2e-46
 Identities = 48/153 (31%), Positives = 82/153 (53%), Gaps = 14/153 (9%)

Query: 34  SISRL-NLLCGRDPNPSPALTRIFEACNKNPQPLIDSVLTNLGDKFTQHYSAS-GDTARD 91
           +I +L  +L      PS  L   F  C  NP+  I   + ++G  F + ++ + G    +
Sbjct: 2   TIQQLMMILNSASDQPSENLISYFNNCTVNPKESILKRVKDIGYIFKEKFAKAVGQGCVE 61

Query: 92  FAEKRLSVAVCLYYKLLESILADE-QKKPAYDFNVLLSLQIFHETLFACCIEIVIFCYNS 150
              +R  + V LYY+++ES+L  E ++    +F+ LL+  IFH +L AC +E+V+  Y+ 
Sbjct: 62  IGSQRYKLGVRLYYRVMESMLKSEEERLSIQNFSKLLNDNIFHMSLLACALEVVMATYSR 121

Query: 151 NS-----------FPWILSVLGIEPYHFYKVIE 172
           ++           FPWIL+VL ++ + FYKVIE
Sbjct: 122 STSQNLDSGTDLSFPWILNVLNLKAFDFYKVIE 154


>d2fsqa1 d.61.1.4 (A:6-237) Putative phosphoesterase Atu0111
           {Agrobacterium tumefaciens [TaxId: 358]}
          Length = 232

 Score = 25.6 bits (56), Expect = 3.9
 Identities = 17/97 (17%), Positives = 26/97 (26%), Gaps = 15/97 (15%)

Query: 49  SPALTRIFEACNKNPQPLIDSVLTNLGDKFTQHYSA---SGDTARDFAEKRLSVAVCLYY 105
           S  L  I  A +  P         +LG +F+         G+T      +          
Sbjct: 2   SKDLDYISTANHDQPPR-------HLGSRFSAEGEFLPEPGNTVVCHLVEGSQT-----E 49

Query: 106 KLLESILADEQKKPAYDFNVLLSLQIFHETLFACCIE 142
             + S        P         +   H T+F   IE
Sbjct: 50  SAIVSTRQRFLDMPEASQLAFTPVSSLHMTVFQGVIE 86


>d1ufaa1 a.8.3.3 (A:413-517) Hypothetical protein TT1467, domain 2
           {Thermus thermophilus [TaxId: 274]}
          Length = 105

 Score = 24.0 bits (52), Expect = 8.5
 Identities = 6/32 (18%), Positives = 13/32 (40%)

Query: 87  DTARDFAEKRLSVAVCLYYKLLESILADEQKK 118
             A  +A +R       ++ LL+    +E + 
Sbjct: 56  GQAEAYARERYEEHARAFFHLLKGASPEELRA 87


>d1h97a_ a.1.1.2 (A:) Trematode hemoglobin/myoglobin {Paramphistomum
           epiclitum [TaxId: 54403]}
          Length = 147

 Score = 24.2 bits (52), Expect = 8.5
 Identities = 7/113 (6%), Positives = 25/113 (22%), Gaps = 13/113 (11%)

Query: 91  DFAEKRLSVAVCLYYKLLES---ILADEQKKPAYDFNVLLSLQIFHETLFACCIEIVIFC 147
           D     +   +  Y+ L  +    ++   +   +    ++  +            IV   
Sbjct: 19  DTPAHIVETGLGAYHALFTAHPQYISHFSRLEGHTIENVMQSEGIKHYARTLTEAIVHML 78

Query: 148 YNSNSFPWILSVL----------GIEPYHFYKVIEWLLTPNPEVLGSNSGNEI 190
              ++   +  +            +    F             ++    G   
Sbjct: 79  KEISNDAEVKKIAAQYGKDHTSRKVTKDEFMSGEPIFTKYFQNLVKDAEGKAA 131


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.137    0.421 

Gapped
Lambda     K      H
   0.267   0.0641    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 710,421
Number of extensions: 30866
Number of successful extensions: 89
Number of sequences better than 10.0: 1
Number of HSP's gapped: 86
Number of HSP's successfully gapped: 5
Length of query: 190
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 110
Effective length of database: 1,309,196
Effective search space: 144011560
Effective search space used: 144011560
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.2 bits)