BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9486
(165 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q921G7|ETFD_MOUSE Electron transfer flavoprotein-ubiquinone oxidoreductase,
mitochondrial OS=Mus musculus GN=Etfdh PE=1 SV=1
Length = 616
Score = 248 bits (633), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 112/156 (71%), Positives = 129/156 (82%)
Query: 1 GHILSGAVIDPIALNELLPDWKDLGAPLNTPVQEDKFAYLTKSKRIGIPILPGMPMNNHG 60
H LSGA +DP A EL PDWK+ GAPLNTPV ED+FA LT+ RI +PILPG+PMNNHG
Sbjct: 110 AHTLSGACLDPAAFKELFPDWKEKGAPLNTPVTEDRFAILTEKHRIPVPILPGLPMNNHG 169
Query: 61 NYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDT 120
NY+VRLGH+V W+GEQAEA+GVE+YPG A+EVLYH DGSVKGIAT DVGI KDG+PK T
Sbjct: 170 NYIVRLGHLVSWMGEQAEALGVEVYPGYAAAEVLYHEDGSVKGIATNDVGIQKDGAPKTT 229
Query: 121 FARGMELHAKVTIFAEGCHGHLTKSLSSRFNLRGQC 156
F RG+ELHAKVT+FAEGCHGHL K L +F+LR C
Sbjct: 230 FERGLELHAKVTVFAEGCHGHLAKQLYKKFDLRASC 265
>sp|Q6UPE1|ETFD_RAT Electron transfer flavoprotein-ubiquinone oxidoreductase,
mitochondrial OS=Rattus norvegicus GN=Etfdh PE=2 SV=1
Length = 616
Score = 248 bits (632), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 112/156 (71%), Positives = 128/156 (82%)
Query: 1 GHILSGAVIDPIALNELLPDWKDLGAPLNTPVQEDKFAYLTKSKRIGIPILPGMPMNNHG 60
H LSGA +DP A EL PDWK+ GAPLNTPV ED+FA LT+ RI +PILPG+PMNNHG
Sbjct: 110 AHTLSGACLDPAAFKELFPDWKEKGAPLNTPVTEDRFAILTEKHRIPVPILPGLPMNNHG 169
Query: 61 NYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDT 120
NY+VRLGH+V W+GEQAEA+GVE+YPG A+EVLYH DGSVKGIAT DVGI KDG+PK T
Sbjct: 170 NYIVRLGHLVSWMGEQAEALGVEVYPGYAAAEVLYHEDGSVKGIATNDVGIQKDGAPKTT 229
Query: 121 FARGMELHAKVTIFAEGCHGHLTKSLSSRFNLRGQC 156
F RG+ELHAKVTIFAEGCHGHL K +F+LR C
Sbjct: 230 FERGLELHAKVTIFAEGCHGHLAKQFYKKFDLRASC 265
>sp|Q2KIG0|ETFD_BOVIN Electron transfer flavoprotein-ubiquinone oxidoreductase,
mitochondrial OS=Bos taurus GN=ETFDH PE=2 SV=1
Length = 617
Score = 246 bits (628), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 112/156 (71%), Positives = 129/156 (82%)
Query: 1 GHILSGAVIDPIALNELLPDWKDLGAPLNTPVQEDKFAYLTKSKRIGIPILPGMPMNNHG 60
H LSGA +DP AL EL PDWK+ GAPLNTPV ED+F LT+ RI +PILPG+PMNNHG
Sbjct: 111 AHTLSGACLDPRALQELFPDWKEKGAPLNTPVTEDRFGILTEKYRIPVPILPGLPMNNHG 170
Query: 61 NYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDT 120
NY+VRLGH+V W+GEQAEA+GVE+YPG A+EVL+H DGSVKGIAT DVGI KDG+PK T
Sbjct: 171 NYIVRLGHLVSWMGEQAEALGVEVYPGYAAAEVLFHEDGSVKGIATNDVGIQKDGAPKTT 230
Query: 121 FARGMELHAKVTIFAEGCHGHLTKSLSSRFNLRGQC 156
F RG+ELHAKVTIFAEGCHGHL K L +F+LR C
Sbjct: 231 FERGLELHAKVTIFAEGCHGHLAKQLYRKFDLRANC 266
>sp|P55931|ETFD_PIG Electron transfer flavoprotein-ubiquinone oxidoreductase,
mitochondrial OS=Sus scrofa GN=ETFDH PE=1 SV=2
Length = 617
Score = 244 bits (624), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 111/156 (71%), Positives = 128/156 (82%)
Query: 1 GHILSGAVIDPIALNELLPDWKDLGAPLNTPVQEDKFAYLTKSKRIGIPILPGMPMNNHG 60
H LSGA +DP A EL PDWK+ GAPLNTPV ED+F LT+ RI +PILPG+PMNNHG
Sbjct: 111 AHTLSGACLDPRAFEELFPDWKEKGAPLNTPVTEDRFGILTEKYRIPVPILPGLPMNNHG 170
Query: 61 NYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDT 120
NYVVRLGH+V W+GEQAEA+GVE+YPG A+E+L+H DGSVKGIAT DVGI KDG+PK T
Sbjct: 171 NYVVRLGHLVSWMGEQAEALGVEVYPGYAAAEILFHEDGSVKGIATNDVGIQKDGAPKTT 230
Query: 121 FARGMELHAKVTIFAEGCHGHLTKSLSSRFNLRGQC 156
F RG+ELHAKVTIFAEGCHGHL K L +F+LR C
Sbjct: 231 FERGLELHAKVTIFAEGCHGHLAKQLYKKFDLRANC 266
>sp|Q16134|ETFD_HUMAN Electron transfer flavoprotein-ubiquinone oxidoreductase,
mitochondrial OS=Homo sapiens GN=ETFDH PE=1 SV=2
Length = 617
Score = 244 bits (622), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 111/156 (71%), Positives = 128/156 (82%)
Query: 1 GHILSGAVIDPIALNELLPDWKDLGAPLNTPVQEDKFAYLTKSKRIGIPILPGMPMNNHG 60
H LSGA +DP A EL PDWK+ GAPLNTPV ED+F LT+ RI +PILPG+PMNNHG
Sbjct: 111 AHTLSGACLDPGAFKELFPDWKEKGAPLNTPVTEDRFGILTEKYRIPVPILPGLPMNNHG 170
Query: 61 NYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDT 120
NY+VRLGH+V W+GEQAEA+GVE+YPG A+EVL+H DGSVKGIAT DVGI KDG+PK T
Sbjct: 171 NYIVRLGHLVSWMGEQAEALGVEVYPGYAAAEVLFHDDGSVKGIATNDVGIQKDGAPKAT 230
Query: 121 FARGMELHAKVTIFAEGCHGHLTKSLSSRFNLRGQC 156
F RG+ELHAKVTIFAEGCHGHL K L +F+LR C
Sbjct: 231 FERGLELHAKVTIFAEGCHGHLAKQLYKKFDLRANC 266
>sp|Q5RDD3|ETFD_PONAB Electron transfer flavoprotein-ubiquinone oxidoreductase,
mitochondrial OS=Pongo abelii GN=ETFDH PE=2 SV=1
Length = 617
Score = 244 bits (622), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 111/156 (71%), Positives = 128/156 (82%)
Query: 1 GHILSGAVIDPIALNELLPDWKDLGAPLNTPVQEDKFAYLTKSKRIGIPILPGMPMNNHG 60
H LSGA +DP A EL PDWK+ GAPLNTPV ED+F LT+ RI +PILPG+PMNNHG
Sbjct: 111 AHTLSGACLDPGAFKELFPDWKEKGAPLNTPVTEDRFGILTEKYRIPVPILPGLPMNNHG 170
Query: 61 NYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDT 120
NY+VRLGH+V W+GEQAEA+GVE+YPG A+EVL+H DGSVKGIAT DVGI KDG+PK T
Sbjct: 171 NYIVRLGHLVSWMGEQAEALGVEVYPGYAAAEVLFHDDGSVKGIATNDVGIQKDGAPKAT 230
Query: 121 FARGMELHAKVTIFAEGCHGHLTKSLSSRFNLRGQC 156
F RG+ELHAKVTIFAEGCHGHL K L +F+LR C
Sbjct: 231 FERGLELHAKVTIFAEGCHGHLAKQLYKKFDLRANC 266
>sp|Q11190|ETFD_CAEEL Electron transfer flavoprotein-ubiquinone oxidoreductase,
mitochondrial OS=Caenorhabditis elegans GN=let-721 PE=1
SV=2
Length = 597
Score = 221 bits (564), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 105/160 (65%), Positives = 128/160 (80%)
Query: 1 GHILSGAVIDPIALNELLPDWKDLGAPLNTPVQEDKFAYLTKSKRIGIPILPGMPMNNHG 60
GH LSGAVI+ AL+EL+P+WK+LGAP+ V + A LT+S RI +P+LPG+P+ NHG
Sbjct: 93 GHTLSGAVIETRALDELIPNWKELGAPVYQQVTSESIAILTESGRIPVPVLPGVPLANHG 152
Query: 61 NYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDT 120
NY+VRLG VV+WLGEQAEA GVE++P I ASEVLY+ DGSVKGIAT DVGI KDG+PKD
Sbjct: 153 NYIVRLGKVVQWLGEQAEAAGVEVWPEIAASEVLYNEDGSVKGIATSDVGIGKDGAPKDG 212
Query: 121 FARGMELHAKVTIFAEGCHGHLTKSLSSRFNLRGQCMSSG 160
FARGME HAK TIFAEGC GHL+K + +F+LR M+ G
Sbjct: 213 FARGMEFHAKCTIFAEGCRGHLSKQVLDKFDLRTHAMTYG 252
>sp|Q54XM6|ETFD_DICDI Electron transfer flavoprotein-ubiquinone oxidoreductase,
mitochondrial OS=Dictyostelium discoideum GN=etfdh PE=3
SV=1
Length = 606
Score = 208 bits (529), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 98/155 (63%), Positives = 126/155 (81%), Gaps = 2/155 (1%)
Query: 2 HILSGAVIDPIALNELLPDWKDLGAPLNTPVQEDKFAYLTKSKRIGIPILPGMPMNNHGN 61
HILSGAV+DP ALNEL+PDWK+ GAPL T V++DKF +LT+++ + +P P + M+N GN
Sbjct: 100 HILSGAVMDPKALNELIPDWKEKGAPLITEVKQDKFYFLTENRSLRLPT-PRL-MHNEGN 157
Query: 62 YVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTF 121
Y++ LG+VV+WLGEQAE+MGVE+YP ASEVLYH +G+V+GIAT D+GIAKDGS F
Sbjct: 158 YIISLGNVVRWLGEQAESMGVEVYPSFAASEVLYHDNGAVRGIATNDMGIAKDGSLTSNF 217
Query: 122 ARGMELHAKVTIFAEGCHGHLTKSLSSRFNLRGQC 156
RGMEL+A++TIFAEGC G LTK L +FNLR +C
Sbjct: 218 TRGMELNARLTIFAEGCRGSLTKGLFEKFNLRDEC 252
>sp|P94132|ETFD_ACIAD Probable electron transfer flavoprotein-ubiquinone oxidoreductase
OS=Acinetobacter sp. (strain ADP1) GN=etfD PE=4 SV=1
Length = 570
Score = 182 bits (461), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 90/155 (58%), Positives = 114/155 (73%), Gaps = 4/155 (2%)
Query: 1 GHILSGAVIDPIALNELLPDWKDLGAPLNTPVQEDKFAYL---TKSKRIGIPILPGMPMN 57
HILSGAV++P A+NEL P+WK+ GAPLN PV EDK +L KS+ ++P M+
Sbjct: 54 AHILSGAVLEPRAINELFPNWKEEGAPLNVPVTEDKTYFLMSDEKSQEAPHWMVPKT-MH 112
Query: 58 NHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSP 117
N GNYV+ LG+VV+WLG++AE + V I+PG A+E+LYH DG+VKGI TGD+GI KDG P
Sbjct: 113 NDGNYVISLGNVVRWLGQKAEELEVSIFPGFAAAEILYHADGTVKGIQTGDMGIGKDGEP 172
Query: 118 KDTFARGMELHAKVTIFAEGCHGHLTKSLSSRFNL 152
FA G ELHAK T+FAEGC GHL K L ++FNL
Sbjct: 173 THNFAPGYELHAKYTLFAEGCRGHLGKRLINKFNL 207
>sp|P87111|ETFD_SCHPO Probable electron transfer flavoprotein-ubiquinone oxidoreductase,
mitochondrial OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=SPAC20G8.04c PE=3 SV=1
Length = 632
Score = 169 bits (429), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 84/155 (54%), Positives = 99/155 (63%), Gaps = 2/155 (1%)
Query: 2 HILSGAVIDPIALNELLPDWKDLGAPLNTPVQEDKFAYLTKSKRIGIPILPGMPMNNHGN 61
H +SGAVI P AL+ELLP+W+D T V DK +L IP+ P M NHGN
Sbjct: 134 HSVSGAVIQPTALDELLPNWRDDPPENCTAVTHDKMKFLIPKLHFPIPVPPAM--KNHGN 191
Query: 62 YVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTF 121
YV+ L +WL +AE GVEIYP ASEVLY+ DGSV G+AT D G+ G PKD F
Sbjct: 192 YVMSLAEFTRWLAAKAEEYGVEIYPSFAASEVLYNKDGSVIGVATNDFGVDSKGLPKDNF 251
Query: 122 ARGMELHAKVTIFAEGCHGHLTKSLSSRFNLRGQC 156
RGM HA VT+FAEG HG L+KS+ RFNLRG C
Sbjct: 252 ERGMAFHAPVTLFAEGAHGSLSKSIIKRFNLRGNC 286
>sp|Q9HZP5|ETFD_PSEAE Electron transfer flavoprotein-ubiquinone oxidoreductase
OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C
/ PRS 101 / LMG 12228) GN=PA2953 PE=1 SV=1
Length = 551
Score = 162 bits (411), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 81/158 (51%), Positives = 107/158 (67%), Gaps = 5/158 (3%)
Query: 2 HILSGAVIDPIALNELLPDWKDLGAPLNTPVQEDKFAYLTKSKRIGIPI---LPGMPMNN 58
HILSGAV +P ALNEL PDWK+LGAPLNTPV D Y+ KS + M+N
Sbjct: 51 HILSGAVFEPRALNELFPDWKELGAPLNTPVTGDDI-YVLKSAESATKVPNFFVPKTMHN 109
Query: 59 HGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPK 118
GNY++ LG++ +WL +QAE +GVEIYPG A E L +G V+GI TGD+G+ ++G+PK
Sbjct: 110 EGNYIISLGNLCRWLAQQAEGLGVEIYPGFAAQEALIDENGVVRGIVTGDLGVDREGNPK 169
Query: 119 D-TFARGMELHAKVTIFAEGCHGHLTKSLSSRFNLRGQ 155
+ + GMEL AK T+FAEGC GH+ K L ++NL +
Sbjct: 170 EGYYTPGMELRAKYTLFAEGCRGHIGKQLIKKYNLDSE 207
>sp|Q08822|ETFD_YEAST Probable electron transfer flavoprotein-ubiquinone oxidoreductase,
mitochondrial OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=CIR2 PE=1 SV=1
Length = 631
Score = 136 bits (343), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 71/158 (44%), Positives = 100/158 (63%), Gaps = 6/158 (3%)
Query: 1 GHILSGAVIDPIALNELLPDWK-DLGAPL----NTPVQEDKFAYLTKSKRIGIPILPGMP 55
G +SGA+++P EL PD K D+G PL T V ++ +L I +P P
Sbjct: 106 GQTVSGAILEPGVWKELFPDEKSDIGIPLPKELATLVTKEHLKFLKGKWAISVP-EPSQM 164
Query: 56 MNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDG 115
+N NY+V L VV +LGE+AE +GVE+YPGI S+++Y + +VKG+ T D GI+K G
Sbjct: 165 INKGRNYIVSLNQVVGYLGEKAEEVGVEVYPGIAVSDLIYDENNAVKGVITKDAGISKSG 224
Query: 116 SPKDTFARGMELHAKVTIFAEGCHGHLTKSLSSRFNLR 153
PK+TF RGME A+ T+ AEGCHG LTK ++++LR
Sbjct: 225 KPKETFERGMEFWARQTVLAEGCHGSLTKQALAKYDLR 262
>sp|P77337|YDIS_ECOLI Probable electron transfer flavoprotein-quinone oxidoreductase YdiS
OS=Escherichia coli (strain K12) GN=ydiS PE=3 SV=1
Length = 429
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 59/134 (44%), Gaps = 19/134 (14%)
Query: 14 LNELLPDWKDLGAPLNTPVQEDKFAYLTKSKRIGIPILPGMP-MNNHGNYVVRLGHVVKW 72
L ++P + + AP+ V +K ++LT+ + + P + H +Y V + W
Sbjct: 55 LEAIIPGFA-VSAPVERKVTREKISFLTEESAVTLDFHREQPDVPQHASYTVLRNRLDPW 113
Query: 73 LGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVT 132
L EQAE G + PG+ ++ G+ V G+ GD D L A V
Sbjct: 114 LMEQAEQAGAQFIPGVRVDALVREGN-KVTGVQAGD----------DI------LEANVV 156
Query: 133 IFAEGCHGHLTKSL 146
I A+G + L +SL
Sbjct: 157 ILADGVNSMLGRSL 170
>sp|Q8ZRW9|FIXC_SALTY Protein FixC OS=Salmonella typhimurium (strain LT2 / SGSC1412 /
ATCC 700720) GN=fixC PE=3 SV=1
Length = 428
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 60/136 (44%), Gaps = 21/136 (15%)
Query: 13 ALNELLPDWKDLGAPLNTPVQEDKFAYLTKSKRIGIPILPGMPMN-NHGNYVVRLGHVVK 71
+L ++P + D AP+ + +K A++T + + I G + + +Y V
Sbjct: 54 SLERIIPGFAD-QAPIERMITHEKLAFMTDNGAMTIDYCNGEDASASQVSYSVLRSKFDA 112
Query: 72 WLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGI-ATGDVGIAKDGSPKDTFARGMELHAK 130
WL EQAE G ++ GI V+ DG V G+ A GD+ L AK
Sbjct: 113 WLMEQAEEAGAQLITGIRVDNVVQR-DGKVVGVEADGDI-----------------LEAK 154
Query: 131 VTIFAEGCHGHLTKSL 146
V I A+G + L + L
Sbjct: 155 VVILADGVNSLLAEKL 170
>sp|Q8Z9K9|FIXC_SALTI Protein FixC OS=Salmonella typhi GN=fixC PE=3 SV=1
Length = 428
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 60/136 (44%), Gaps = 21/136 (15%)
Query: 13 ALNELLPDWKDLGAPLNTPVQEDKFAYLTKSKRIGIPILPGMPMN-NHGNYVVRLGHVVK 71
+L ++P + D AP+ + +K A++T + + I G + + +Y V
Sbjct: 54 SLERIIPGFAD-QAPIERMITHEKLAFMTDNGAMTIDYCNGEDASASQVSYSVLRSKFDA 112
Query: 72 WLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGI-ATGDVGIAKDGSPKDTFARGMELHAK 130
WL EQAE G ++ GI V+ DG V G+ A GD+ L AK
Sbjct: 113 WLMEQAEEAGAQLITGIRVDNVVQR-DGKVVGVEADGDI-----------------LEAK 154
Query: 131 VTIFAEGCHGHLTKSL 146
V I A+G + L + L
Sbjct: 155 VVILADGVNSLLAEKL 170
>sp|P68644|FIXC_ECOLI Protein FixC OS=Escherichia coli (strain K12) GN=fixC PE=3 SV=1
Length = 428
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 58/136 (42%), Gaps = 21/136 (15%)
Query: 13 ALNELLPDWKDLGAPLNTPVQEDKFAYLTKSKRIGIPILPGMPMN-NHGNYVVRLGHVVK 71
+L ++P + D AP+ + +K A++T+ + + G + + +Y V
Sbjct: 54 SLEHIIPGFAD-SAPVERLITHEKLAFMTEKSAMTMDYCNGDETSPSQRSYSVLRSKFDA 112
Query: 72 WLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGI-ATGDVGIAKDGSPKDTFARGMELHAK 130
WL EQAE G ++ GI L DG V G+ A GDV + AK
Sbjct: 113 WLMEQAEEAGAQLITGIRVDN-LVQRDGKVVGVEADGDV-----------------IEAK 154
Query: 131 VTIFAEGCHGHLTKSL 146
I A+G + L + L
Sbjct: 155 TVILADGVNSILAEKL 170
>sp|P68645|FIXC_ECOL6 Protein FixC OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928
/ UPEC) GN=fixC PE=3 SV=1
Length = 428
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 58/136 (42%), Gaps = 21/136 (15%)
Query: 13 ALNELLPDWKDLGAPLNTPVQEDKFAYLTKSKRIGIPILPGMPMN-NHGNYVVRLGHVVK 71
+L ++P + D AP+ + +K A++T+ + + G + + +Y V
Sbjct: 54 SLEHIIPGFAD-SAPVERLITHEKLAFMTEKSAMTMDYCNGDETSPSQRSYSVLRSKFDA 112
Query: 72 WLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGI-ATGDVGIAKDGSPKDTFARGMELHAK 130
WL EQAE G ++ GI L DG V G+ A GDV + AK
Sbjct: 113 WLMEQAEEAGAQLITGIRVDN-LVQRDGKVVGVEADGDV-----------------IEAK 154
Query: 131 VTIFAEGCHGHLTKSL 146
I A+G + L + L
Sbjct: 155 TVILADGVNSILAEKL 170
>sp|Q83SQ7|FIXC_SHIFL Protein FixC OS=Shigella flexneri GN=fixC PE=3 SV=1
Length = 428
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 73/166 (43%), Gaps = 18/166 (10%)
Query: 13 ALNELLPDWKDLGAPLNTPVQEDKFAYLTKSKRIGIPILPGMPMN-NHGNYVVRLGHVVK 71
+L ++P + D AP+ + +K A++T+ + + G + + +Y V
Sbjct: 54 SLEHIIPGFAD-SAPVERLITHEKLAFMTEKSAMTMDYCNGDETSPSQRSYSVLRSKFDA 112
Query: 72 WLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGI-ATGDVGIAK-----DGSPKDTFAR-G 124
WL EQAE G ++ GI L DG V G+ A GDV AK DG + G
Sbjct: 113 WLMEQAEEAGAQLITGIRVDN-LVQRDGKVVGVEADGDVIEAKTVLLADGVNSILAEKLG 171
Query: 125 MELHAKVTIFAEGCHG--HLTKS-LSSRFNLRGQ----CMSSG-PT 162
M K T A G L KS + RF L+G C+ +G PT
Sbjct: 172 MAKRVKPTDVAVGVKELIELPKSVIEDRFQLQGNQGAACLFAGSPT 217
>sp|P26484|FIXC_AZOC5 Protein FixC OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM
5975 / ORS 571) GN=fixC PE=3 SV=2
Length = 435
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 57/140 (40%), Gaps = 16/140 (11%)
Query: 4 LSGAVIDPIALNELLPDWKDLGAPLNTPVQEDKFAYLTKSKRIGIPILP-GMPMNNHGNY 62
+ GA++ L +L+PD+++ APL + E +F L +G+ Y
Sbjct: 45 VQGAILYADMLEKLVPDFRE-DAPLERHLVEQRFWMLDDRSHVGLHYRSEDFNEEKPNRY 103
Query: 63 VVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFA 122
+ KW + + G + +E++ G V G+ T D S
Sbjct: 104 TIIRAQFDKWFSSKVKEAGATVLCETTVTELVQDAYGKVIGVKT-------DRS------ 150
Query: 123 RGMELHAKVTIFAEGCHGHL 142
G ++HA V + AEG +G L
Sbjct: 151 -GGQIHADVVVLAEGVNGLL 169
>sp|Q46904|YGCN_ECOLI Probable electron transfer flavoprotein-quinone oxidoreductase YgcN
OS=Escherichia coli (strain K12) GN=ygcN PE=3 SV=2
Length = 423
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 46/105 (43%), Gaps = 6/105 (5%)
Query: 4 LSGAVIDPIALNELLPDWKDLGAPLNTPVQEDKFAYLTKSKRIGIPILPGMPMNNHGNYV 63
LSG + AL ELLP + L APL + + + LT G+ + V
Sbjct: 44 LSGGRLYTHALAELLPQFH-LTAPLERRITHESLSLLTPD---GVTTFSSLQPGGESWSV 99
Query: 64 VRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGD 108
+R WL +AE GVE PG + LY +G V G+ GD
Sbjct: 100 LR-ARFDPWLVAEAEKEGVECIPGATV-DALYEENGRVCGVICGD 142
>sp|Q7AHT0|FIXC_ECO57 Protein FixC OS=Escherichia coli O157:H7 GN=fixC PE=3 SV=1
Length = 428
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 58/136 (42%), Gaps = 21/136 (15%)
Query: 13 ALNELLPDWKDLGAPLNTPVQEDKFAYLTKSKRIGIPILPGMPMN-NHGNYVVRLGHVVK 71
+L ++P + + AP+ + +K A++T+ + + G + + +Y V
Sbjct: 54 SLEHIIPGFAE-SAPVERLITHEKLAFMTEKSAMTMDYCNGDETSPSQRSYSVLRSKFDA 112
Query: 72 WLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGI-ATGDVGIAKDGSPKDTFARGMELHAK 130
WL EQAE G ++ GI L DG V G+ A GDV + AK
Sbjct: 113 WLMEQAEEAGAQLITGIRVDN-LVQRDGKVVGVEADGDV-----------------IEAK 154
Query: 131 VTIFAEGCHGHLTKSL 146
I A+G + L + L
Sbjct: 155 TVILADGVNSILAEKL 170
>sp|Q53208|FIXC_RHISN Protein FixC OS=Rhizobium sp. (strain NGR234) GN=fixC PE=3 SV=1
Length = 435
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 55/142 (38%), Gaps = 20/142 (14%)
Query: 4 LSGAVIDPIALNELLPDWKDLGAPLNTPVQEDKFAYLTKSKRIGIPILP---GMPMNNHG 60
+ GA++ L ++PD++D APL + E +F + G+ P N
Sbjct: 45 VQGAILYANMLETIIPDFRD-DAPLERHLVEQRFWVTDDTSHTGMHYRSDDFNEPAPNR- 102
Query: 61 NYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDT 120
Y + KW + A G + +E+ G V G+ T G
Sbjct: 103 -YTIIRAQFDKWFSRKVRAAGAIVLCETTVTELALDAAGKVIGVHTDRAG---------- 151
Query: 121 FARGMELHAKVTIFAEGCHGHL 142
G+ +HA V + AEG +G L
Sbjct: 152 ---GV-IHADVVVLAEGVNGLL 169
>sp|P10331|FIXC_BRAJA Protein FixC OS=Bradyrhizobium japonicum (strain USDA 110) GN=fixC
PE=3 SV=2
Length = 435
Score = 35.0 bits (79), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 30/140 (21%), Positives = 55/140 (39%), Gaps = 16/140 (11%)
Query: 4 LSGAVIDPIALNELLPDWKDLGAPLNTPVQEDKFAYLTKSKRIGIPILPGMPMNNHGN-Y 62
+ GA++ + +L+P++++ APL + E +F + +G+ N Y
Sbjct: 45 VQGAILYADMMEKLIPEFRE-EAPLERHLIEQRFWMMDDRSHVGMHYRSEDFNEQRPNRY 103
Query: 63 VVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFA 122
+ KW + G + +E+ V G+ T +DG
Sbjct: 104 TIIRAQFDKWFSSKVREAGAIVLCETTVTELAQDDRNRVVGVRTD----RRDG------- 152
Query: 123 RGMELHAKVTIFAEGCHGHL 142
E+HA V + AEG +G L
Sbjct: 153 ---EIHADVVVLAEGVNGLL 169
>sp|Q8ZEB6|FUMC_YERPE Fumarate hydratase class II OS=Yersinia pestis GN=fumC PE=3 SV=1
Length = 465
Score = 34.7 bits (78), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 29/62 (46%)
Query: 53 GMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIA 112
G +N H Y VR+ + + L Q + + + L HG G++KG+A + IA
Sbjct: 233 GTGLNTHPEYAVRVANEIATLTRQPFITAPNKFESLGTCDALVHGHGALKGLAASLMKIA 292
Query: 113 KD 114
D
Sbjct: 293 ND 294
>sp|A4YI28|SYL2_METS5 Leucine--tRNA ligase 2 OS=Metallosphaera sedula (strain ATCC 51363
/ DSM 5348) GN=leuS2 PE=3 SV=1
Length = 950
Score = 33.5 bits (75), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 49/112 (43%), Gaps = 3/112 (2%)
Query: 13 ALNELLPDWKDLGAPLNTPVQEDKFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVV-K 71
+ E++ W L AP + E+ + L + + + P P N+ N + L H K
Sbjct: 758 VIREVVETWTKLMAPFAPHLTEEMWHQLGHNTFLSLESWPT-PDNSKINDQIELEHEYHK 816
Query: 72 WLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFAR 123
L E A+ + +Y G P+S +LY DGS+ + + + G F +
Sbjct: 817 LLIEDIRAI-LNVYKGKPSSVLLYVHDGSLNQVVKSALDVLNSGGTMKDFMQ 867
>sp|Q7N4H8|FUMC_PHOLL Fumarate hydratase class II OS=Photorhabdus luminescens subsp.
laumondii (strain TT01) GN=fumC PE=3 SV=1
Length = 464
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 27/62 (43%)
Query: 53 GMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIA 112
G +N H Y VR+ + L + + + + L H G++KG+A + IA
Sbjct: 233 GTGLNTHPEYAVRVAKKLAELTNHSFVTAPNKFEALATCDALVHSHGALKGLAASIMKIA 292
Query: 113 KD 114
D
Sbjct: 293 ND 294
>sp|Q6LST5|MGSA_PHOPR Methylglyoxal synthase OS=Photobacterium profundum GN=mgsA PE=3
SV=2
Length = 152
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 6/58 (10%)
Query: 111 IAKDGSPKDTFARGMELHAKV---TIFAEGCHGHLTKSLSSRFNLRGQCMSSGPTGLD 165
+A D +D E K+ T++A G GHL LS L+ CM SGP G D
Sbjct: 17 VAHDNCKQDLLRWVKEFEDKLEDHTLYATGTTGHL---LSKETGLKINCMISGPMGGD 71
>sp|P0C0V0|DEGP_ECOLI Periplasmic serine endoprotease DegP OS=Escherichia coli (strain
K12) GN=degP PE=1 SV=1
Length = 474
Score = 31.2 bits (69), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 75 EQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKV 131
E A+AM V+ G S+VL + + GI GDV + +G P +FA L A+V
Sbjct: 301 ELAKAMKVDAQRGAFVSQVLPNSSAAKAGIKAGDVITSLNGKPISSFA---ALRAQV 354
>sp|P0C0V1|DEGP_ECO57 Periplasmic serine endoprotease DegP OS=Escherichia coli O157:H7
GN=degP PE=3 SV=1
Length = 474
Score = 31.2 bits (69), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 75 EQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKV 131
E A+AM V+ G S+VL + + GI GDV + +G P +FA L A+V
Sbjct: 301 ELAKAMKVDAQRGAFVSQVLPNSSAAKAGIKAGDVITSLNGKPISSFA---ALRAQV 354
>sp|P28594|CAPP_NOSS1 Phosphoenolpyruvate carboxylase OS=Nostoc sp. (strain PCC 7120 /
UTEX 2576) GN=ppc PE=3 SV=2
Length = 1026
Score = 30.8 bits (68), Expect = 3.5, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Query: 13 ALNELLPDWKDLGAPLNTPVQEDKFAYLTKSKRIGIPILPG-MPMNNHGNYVVRLGHVVK 71
ALNE+L + L P N +E + A+LT + P++ +P ++ N V++ VV+
Sbjct: 489 ALNEILDYLQLLPQPYNDLSEEQRVAWLTTELQTRRPLISSELPFSDKTNDVIKTFRVVR 548
Query: 72 WLGEQ 76
L ++
Sbjct: 549 SLQQE 553
>sp|Q3MB82|CAPP_ANAVT Phosphoenolpyruvate carboxylase OS=Anabaena variabilis (strain ATCC
29413 / PCC 7937) GN=ppc PE=3 SV=1
Length = 1023
Score = 30.8 bits (68), Expect = 3.5, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Query: 13 ALNELLPDWKDLGAPLNTPVQEDKFAYLTKSKRIGIPILPG-MPMNNHGNYVVRLGHVVK 71
ALNE+L + L P N +E + A+LT + P++ +P ++ N V++ VV+
Sbjct: 489 ALNEILDYLQLLPQPYNDLSEEQRVAWLTTELQTRRPLISSELPFSDKTNDVIKTFRVVR 548
Query: 72 WLGEQ 76
L ++
Sbjct: 549 SLQQE 553
>sp|Q473L9|PPNK_CUPPJ Probable inorganic polyphosphate/ATP-NAD kinase OS=Cupriavidus
pinatubonensis (strain JMP134 / LMG 1197) GN=ppnK PE=3
SV=2
Length = 305
Score = 30.8 bits (68), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 39/90 (43%), Gaps = 9/90 (10%)
Query: 24 LGAPLNTPVQEDKFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVE 83
+ AP T F + R + G P+ +Y++R G V + E + A G+
Sbjct: 1 MSAPQKTSALRTPFKTVALVGRYSTAGIEG-PLEELASYILRNGQDVVFERETSLATGLT 59
Query: 84 IYPGIPASE--------VLYHGDGSVKGIA 105
YP + A E V+ GDG++ GIA
Sbjct: 60 GYPALTAEEIGREADVAVVLGGDGTLLGIA 89
>sp|C8WV58|BGAL_ALIAD Beta-galactosidase BglY OS=Alicyclobacillus acidocaldarius subsp.
acidocaldarius (strain ATCC 27009 / DSM 446 / 104-1A)
GN=bglY PE=1 SV=1
Length = 688
Score = 30.8 bits (68), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 44/94 (46%), Gaps = 6/94 (6%)
Query: 32 VQEDKFAYLTKSKRIGIPILPGMPMNNHGNYVVR-LGHVVKWLGEQAEAM-GVEIYPGIP 89
V ++ L +R+ + + G P+ G+Y R L VV G + A+ G + Y G+P
Sbjct: 518 VWAEEIDALYDGERVPVRVADGNPLGLAGHYEARELCEVVHLEGAEPIAVYGADYYEGMP 577
Query: 90 ASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFAR 123
A+ V G G V +A +D +D FAR
Sbjct: 578 AATVHRVGKGKVYYVAAR----LEDAFLRDFFAR 607
>sp|O06264|ECCC4_MYCTU ESX-4 secretion system protein EccC4 OS=Mycobacterium tuberculosis
GN=eccC4 PE=3 SV=1
Length = 1236
Score = 30.4 bits (67), Expect = 5.5, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 4/71 (5%)
Query: 51 LPGMPMNNHGNYVVRLG---HVVKWLGEQAEAMGVEIYPGIPA-SEVLYHGDGSVKGIAT 106
L +P N H N LG V L E A+ + + A + G+G++ G+ T
Sbjct: 252 LKWLPHNQHPNACDALGPAPMVYSTLAEMQNALAATVLAHVVAIVDTAERGNGAITGVIT 311
Query: 107 GDVGIAKDGSP 117
+VG +DG+P
Sbjct: 312 IEVGARRDGAP 322
>sp|P26982|DEGP_SALTY Periplasmic serine endoprotease DegP OS=Salmonella typhimurium
(strain LT2 / SGSC1412 / ATCC 700720) GN=degP PE=3 SV=1
Length = 475
Score = 30.4 bits (67), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 75 EQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKV 131
E A+AM V+ G S+V+ + + GI GDV + +G P +FA L A+V
Sbjct: 302 ELAKAMKVDAQRGAFVSQVMPNSSAAKAGIKAGDVITSLNGKPISSFA---ALRAQV 355
>sp|P39099|DEGQ_ECOLI Periplasmic pH-dependent serine endoprotease DegQ OS=Escherichia
coli (strain K12) GN=degQ PE=1 SV=1
Length = 455
Score = 29.6 bits (65), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 5/67 (7%)
Query: 77 AEAMGVEIYPGIPASEVLYHGDGSVK-GIATGDVGIAKDGSPKDTFARGMELHAKVTIFA 135
A+A +++ G SEVL G GS K G+ GD+ + +G P ++FA EL +++
Sbjct: 281 AKAFNLDVQRGAFVSEVL-PGSGSAKAGVKAGDIITSLNGKPLNSFA---ELRSRIATTE 336
Query: 136 EGCHGHL 142
G L
Sbjct: 337 PGTKVKL 343
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.139 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,341,751
Number of Sequences: 539616
Number of extensions: 2899089
Number of successful extensions: 6173
Number of sequences better than 100.0: 44
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 6138
Number of HSP's gapped (non-prelim): 45
length of query: 165
length of database: 191,569,459
effective HSP length: 109
effective length of query: 56
effective length of database: 132,751,315
effective search space: 7434073640
effective search space used: 7434073640
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.2 bits)