Query psy9486
Match_columns 165
No_of_seqs 202 out of 1452
Neff 6.9
Searched_HMMs 46136
Date Fri Aug 16 20:38:03 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9486.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9486hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2415|consensus 100.0 1E-38 2.2E-43 273.9 13.4 159 1-161 119-277 (621)
2 COG0644 FixC Dehydrogenases (f 99.7 2.1E-17 4.5E-22 142.4 11.8 128 1-160 40-167 (396)
3 PRK10015 oxidoreductase; Provi 99.7 9.8E-17 2.1E-21 140.0 14.5 137 2-160 43-180 (429)
4 PRK10157 putative oxidoreducta 99.7 1.3E-16 2.9E-21 139.0 13.9 135 2-158 43-178 (428)
5 PF01946 Thi4: Thi4 family; PD 99.1 3.8E-10 8.2E-15 90.9 8.2 99 46-152 79-177 (230)
6 PRK04176 ribulose-1,5-biphosph 99.1 9.3E-10 2E-14 90.4 10.5 89 59-151 96-184 (257)
7 TIGR00292 thiazole biosynthesi 99.1 2.4E-09 5.3E-14 87.9 11.9 90 61-154 94-184 (254)
8 COG1635 THI4 Ribulose 1,5-bisp 98.9 4.9E-09 1.1E-13 84.8 8.9 88 59-150 101-188 (262)
9 PF04820 Trp_halogenase: Trypt 98.9 4.1E-09 8.8E-14 93.0 9.0 71 59-145 146-216 (454)
10 PF01266 DAO: FAD dependent ox 98.6 1.5E-07 3.4E-12 77.6 9.0 76 59-154 139-214 (358)
11 TIGR01988 Ubi-OHases Ubiquinon 98.6 6.4E-07 1.4E-11 75.6 11.4 70 59-145 98-168 (385)
12 PRK08013 oxidoreductase; Provi 98.6 6.7E-07 1.5E-11 77.0 11.5 73 60-153 104-177 (400)
13 TIGR02023 BchP-ChlP geranylger 98.6 9.8E-07 2.1E-11 75.7 11.7 72 63-145 88-160 (388)
14 TIGR02028 ChlP geranylgeranyl 98.5 1.1E-06 2.3E-11 76.2 11.8 76 62-145 88-165 (398)
15 TIGR02032 GG-red-SF geranylger 98.5 6.2E-07 1.3E-11 72.6 9.4 76 59-154 83-158 (295)
16 PF01494 FAD_binding_3: FAD bi 98.5 3.6E-07 7.7E-12 75.4 7.5 75 59-145 103-177 (356)
17 TIGR01984 UbiH 2-polyprenyl-6- 98.5 1.7E-06 3.7E-11 73.3 11.4 74 59-153 97-171 (382)
18 PRK08773 2-octaprenyl-3-methyl 98.5 1.3E-06 2.9E-11 74.7 10.7 69 60-145 106-174 (392)
19 PRK05714 2-octaprenyl-3-methyl 98.5 2.3E-06 5E-11 73.5 11.9 94 35-145 80-173 (405)
20 PRK06617 2-octaprenyl-6-methox 98.5 3.1E-06 6.7E-11 72.3 12.2 68 60-145 97-165 (374)
21 COG0654 UbiH 2-polyprenyl-6-me 98.4 3E-06 6.5E-11 72.9 11.9 82 45-145 84-167 (387)
22 PRK06185 hypothetical protein; 98.4 4.9E-06 1.1E-10 71.4 13.2 78 60-154 101-179 (407)
23 PLN00093 geranylgeranyl diphos 98.4 2.3E-06 4.9E-11 75.6 11.0 75 63-145 128-204 (450)
24 PLN02985 squalene monooxygenas 98.4 2.5E-06 5.3E-11 76.6 10.8 99 35-146 113-214 (514)
25 TIGR01989 COQ6 Ubiquinone bios 98.4 4.5E-06 9.7E-11 72.9 11.8 101 33-153 84-192 (437)
26 PRK07333 2-octaprenyl-6-methox 98.3 3.6E-06 7.8E-11 71.9 9.7 73 60-153 104-176 (403)
27 PRK08020 ubiF 2-octaprenyl-3-m 98.3 4.2E-06 9.1E-11 71.4 9.8 70 59-145 104-174 (391)
28 PRK07608 ubiquinone biosynthes 98.3 5.5E-06 1.2E-10 70.4 10.1 74 59-154 103-177 (388)
29 PRK05732 2-octaprenyl-6-methox 98.3 8.2E-06 1.8E-10 69.4 11.1 69 60-145 105-174 (395)
30 PRK09126 hypothetical protein; 98.3 1.3E-05 2.8E-10 68.3 12.0 69 60-145 103-172 (392)
31 PRK08850 2-octaprenyl-6-methox 98.3 1.3E-05 2.8E-10 69.0 11.6 70 59-145 103-173 (405)
32 PRK07045 putative monooxygenas 98.2 5.5E-06 1.2E-10 70.8 8.7 70 62-146 101-171 (388)
33 TIGR02352 thiamin_ThiO glycine 98.2 5.4E-06 1.2E-10 68.6 8.1 63 61-140 131-193 (337)
34 TIGR01813 flavo_cyto_c flavocy 98.2 7.3E-06 1.6E-10 71.3 8.8 74 66-151 129-202 (439)
35 PRK07538 hypothetical protein; 98.2 2.3E-05 5E-10 67.7 11.8 74 61-146 96-171 (413)
36 TIGR03377 glycerol3P_GlpA glyc 98.2 1.1E-05 2.5E-10 71.9 10.0 82 63-158 124-205 (516)
37 PRK07364 2-octaprenyl-6-methox 98.2 2E-05 4.4E-10 67.6 11.2 72 60-145 114-186 (415)
38 PRK07121 hypothetical protein; 98.2 9.6E-06 2.1E-10 71.9 9.3 73 66-151 176-249 (492)
39 PRK00711 D-amino acid dehydrog 98.2 1.4E-05 3.1E-10 68.6 9.8 76 63-158 197-272 (416)
40 PRK12839 hypothetical protein; 98.2 2.2E-05 4.7E-10 71.4 11.4 77 61-150 208-285 (572)
41 PF00890 FAD_binding_2: FAD bi 98.2 6.1E-06 1.3E-10 71.0 7.3 68 63-141 137-204 (417)
42 PRK08243 4-hydroxybenzoate 3-m 98.2 1.9E-05 4.1E-10 67.8 10.3 97 35-146 73-169 (392)
43 PRK06126 hypothetical protein; 98.1 1.3E-05 2.7E-10 71.9 9.2 74 60-145 119-193 (545)
44 PRK12845 3-ketosteroid-delta-1 98.1 1.9E-05 4E-10 71.7 10.3 71 67-151 217-288 (564)
45 PRK08244 hypothetical protein; 98.1 1.6E-05 3.5E-10 70.3 9.5 71 61-145 94-164 (493)
46 PRK11101 glpA sn-glycerol-3-ph 98.1 1.7E-05 3.7E-10 71.6 9.7 82 63-158 145-226 (546)
47 PRK12835 3-ketosteroid-delta-1 98.1 1.3E-05 2.8E-10 73.0 8.9 70 69-151 215-285 (584)
48 PRK08274 tricarballylate dehyd 98.1 2.5E-05 5.4E-10 68.6 10.4 67 66-144 130-196 (466)
49 PRK06847 hypothetical protein; 98.1 2.6E-05 5.7E-10 65.9 10.1 70 60-146 100-169 (375)
50 PRK11445 putative oxidoreducta 98.1 1.4E-05 3.1E-10 67.8 8.3 71 61-146 93-163 (351)
51 PRK06996 hypothetical protein; 98.1 3.8E-05 8.3E-10 66.1 10.7 73 59-145 107-180 (398)
52 PRK07588 hypothetical protein; 98.1 3.5E-05 7.5E-10 65.9 10.3 67 61-145 97-163 (391)
53 PRK07190 hypothetical protein; 98.1 2.2E-05 4.7E-10 70.0 9.3 73 61-154 103-175 (487)
54 PRK05675 sdhA succinate dehydr 98.1 1.5E-05 3.3E-10 72.3 8.2 66 67-142 126-191 (570)
55 TIGR01373 soxB sarcosine oxida 98.0 4.1E-05 8.8E-10 65.8 10.1 75 63-156 179-253 (407)
56 PRK06184 hypothetical protein; 98.0 2.7E-05 5.8E-10 69.1 9.2 72 60-145 102-173 (502)
57 PRK08849 2-octaprenyl-3-methyl 98.0 3.1E-05 6.8E-10 66.2 9.3 68 61-145 104-172 (384)
58 PRK12844 3-ketosteroid-delta-1 98.0 2.4E-05 5.2E-10 70.8 8.9 71 67-151 208-279 (557)
59 PRK07494 2-octaprenyl-6-methox 98.0 2.8E-05 6E-10 66.3 8.7 74 59-153 103-176 (388)
60 TIGR02485 CobZ_N-term precorri 98.0 3.6E-05 7.9E-10 67.1 9.6 68 67-149 123-191 (432)
61 PLN02661 Putative thiazole syn 98.0 6.6E-05 1.4E-09 64.7 10.5 88 60-149 163-253 (357)
62 PTZ00139 Succinate dehydrogena 98.0 2.1E-05 4.6E-10 72.0 8.0 66 67-142 166-231 (617)
63 PRK12843 putative FAD-binding 98.0 4.5E-05 9.8E-10 69.3 10.1 71 67-151 221-292 (578)
64 PRK06134 putative FAD-binding 98.0 6.5E-05 1.4E-09 68.3 10.9 68 64-144 214-282 (581)
65 PRK08163 salicylate hydroxylas 98.0 3.4E-05 7.3E-10 65.8 8.6 69 61-146 103-172 (396)
66 PRK06834 hypothetical protein; 98.0 4.3E-05 9.4E-10 68.0 9.4 69 60-145 93-161 (488)
67 PTZ00367 squalene epoxidase; P 98.0 4.9E-05 1.1E-09 69.2 9.8 104 35-146 103-225 (567)
68 PTZ00383 malate:quinone oxidor 98.0 6.4E-05 1.4E-09 67.4 10.2 72 61-152 205-282 (497)
69 TIGR01816 sdhA_forward succina 97.9 3.3E-05 7.1E-10 70.0 8.2 65 67-142 119-183 (565)
70 PRK06183 mhpA 3-(3-hydroxyphen 97.9 9.3E-05 2E-09 66.4 10.5 72 61-145 107-179 (538)
71 PF01134 GIDA: Glucose inhibit 97.9 4.9E-05 1.1E-09 66.3 8.4 61 61-138 89-150 (392)
72 KOG1298|consensus 97.9 2.8E-05 6E-10 67.8 6.6 97 39-148 119-216 (509)
73 PRK08958 sdhA succinate dehydr 97.9 4.3E-05 9.3E-10 69.7 8.2 66 67-142 143-208 (588)
74 TIGR01377 soxA_mon sarcosine o 97.9 9.3E-05 2E-09 62.6 9.7 72 61-153 139-210 (380)
75 TIGR03378 glycerol3P_GlpB glyc 97.9 7.5E-05 1.6E-09 65.7 9.1 63 64-140 260-323 (419)
76 PRK09078 sdhA succinate dehydr 97.9 4.5E-05 9.7E-10 69.6 8.0 66 67-142 149-214 (598)
77 PF12831 FAD_oxidored: FAD dep 97.9 2.7E-06 5.9E-11 74.4 0.0 70 62-145 85-154 (428)
78 PRK08275 putative oxidoreducta 97.9 6E-05 1.3E-09 68.1 8.6 66 67-142 137-202 (554)
79 PLN00128 Succinate dehydrogena 97.9 4.8E-05 1E-09 70.0 7.9 67 66-142 186-252 (635)
80 COG0578 GlpA Glycerol-3-phosph 97.9 5.1E-05 1.1E-09 68.4 7.8 78 62-154 159-236 (532)
81 PRK12837 3-ketosteroid-delta-1 97.9 0.00012 2.5E-09 65.6 10.0 69 69-151 175-245 (513)
82 PLN02697 lycopene epsilon cycl 97.8 6.9E-05 1.5E-09 67.7 8.4 61 63-140 188-248 (529)
83 PRK08132 FAD-dependent oxidore 97.8 0.00022 4.7E-09 64.1 11.5 75 61-153 119-194 (547)
84 PRK06481 fumarate reductase fl 97.8 8.7E-05 1.9E-09 66.3 8.9 72 67-151 190-261 (506)
85 PRK07057 sdhA succinate dehydr 97.8 7.8E-05 1.7E-09 68.0 8.7 66 67-142 148-213 (591)
86 PRK06452 sdhA succinate dehydr 97.8 7.7E-05 1.7E-09 67.6 8.6 65 67-142 136-200 (566)
87 PRK06475 salicylate hydroxylas 97.8 0.00017 3.6E-09 62.1 10.1 70 62-145 102-172 (400)
88 TIGR01812 sdhA_frdA_Gneg succi 97.8 8E-05 1.7E-09 67.2 8.4 64 68-142 130-193 (566)
89 PRK12834 putative FAD-binding 97.8 0.0001 2.2E-09 66.5 8.7 74 68-150 149-236 (549)
90 PRK11728 hydroxyglutarate oxid 97.8 0.00023 5.1E-09 61.0 10.5 72 61-153 143-214 (393)
91 PRK08205 sdhA succinate dehydr 97.8 9E-05 1.9E-09 67.4 8.2 66 67-142 140-208 (583)
92 PRK07573 sdhA succinate dehydr 97.8 8.8E-05 1.9E-09 68.3 7.9 62 70-142 173-234 (640)
93 PRK05868 hypothetical protein; 97.7 0.00016 3.5E-09 61.9 8.7 68 61-146 99-166 (372)
94 PLN02464 glycerol-3-phosphate 97.7 0.00017 3.6E-09 66.3 9.3 76 63-151 228-304 (627)
95 PRK06753 hypothetical protein; 97.7 8.5E-05 1.8E-09 62.9 6.7 68 60-146 91-158 (373)
96 TIGR01790 carotene-cycl lycope 97.7 0.00021 4.6E-09 60.9 9.1 64 62-142 80-143 (388)
97 COG0579 Predicted dehydrogenas 97.7 0.00024 5.3E-09 62.7 9.5 77 59-154 145-222 (429)
98 TIGR01811 sdhA_Bsu succinate d 97.7 0.00014 3E-09 66.6 8.2 65 68-142 130-198 (603)
99 PRK08626 fumarate reductase fl 97.7 0.00012 2.6E-09 67.6 7.9 64 68-142 159-222 (657)
100 PRK06263 sdhA succinate dehydr 97.7 0.00013 2.7E-09 65.8 7.7 66 67-142 134-199 (543)
101 TIGR01320 mal_quin_oxido malat 97.7 0.0004 8.6E-09 62.0 10.7 81 59-153 170-250 (483)
102 TIGR02730 carot_isom carotene 97.7 0.00015 3.3E-09 64.3 7.6 60 67-142 229-288 (493)
103 PRK05945 sdhA succinate dehydr 97.7 0.00019 4.2E-09 65.1 8.2 65 67-142 135-199 (575)
104 PLN02463 lycopene beta cyclase 97.7 0.00029 6.3E-09 62.4 9.1 64 62-143 109-172 (447)
105 PF03486 HI0933_like: HI0933-l 97.6 0.00022 4.7E-09 62.5 8.2 71 66-152 108-185 (409)
106 PRK12842 putative succinate de 97.6 0.0003 6.5E-09 63.8 9.3 66 65-143 212-278 (574)
107 PTZ00306 NADH-dependent fumara 97.6 0.00022 4.7E-09 69.8 8.8 77 67-151 544-633 (1167)
108 PRK07804 L-aspartate oxidase; 97.6 0.00023 4.9E-09 64.3 8.2 68 67-142 144-212 (541)
109 PRK07843 3-ketosteroid-delta-1 97.6 0.00054 1.2E-08 62.0 10.1 70 68-151 209-279 (557)
110 TIGR02360 pbenz_hydroxyl 4-hyd 97.6 0.0008 1.7E-08 58.0 10.7 97 35-146 73-169 (390)
111 PRK06854 adenylylsulfate reduc 97.6 0.00035 7.5E-09 64.0 8.6 65 66-141 131-196 (608)
112 TIGR03197 MnmC_Cterm tRNA U-34 97.6 0.00019 4.2E-09 61.2 6.6 61 63-141 131-191 (381)
113 PRK12409 D-amino acid dehydrog 97.6 0.00072 1.6E-08 58.2 10.1 75 64-153 194-268 (410)
114 TIGR03329 Phn_aa_oxid putative 97.6 0.00037 8E-09 61.3 8.4 61 61-140 177-237 (460)
115 PRK08641 sdhA succinate dehydr 97.6 0.00034 7.4E-09 63.8 8.4 66 67-142 133-202 (589)
116 PRK06175 L-aspartate oxidase; 97.5 0.00032 7E-09 61.6 7.8 63 67-142 128-191 (433)
117 COG2509 Uncharacterized FAD-de 97.5 0.00046 9.9E-09 61.1 8.5 74 65-154 171-245 (486)
118 TIGR00551 nadB L-aspartate oxi 97.5 0.00036 7.9E-09 62.0 7.6 63 67-142 128-191 (488)
119 PRK05257 malate:quinone oxidor 97.5 0.001 2.2E-08 59.6 10.2 81 59-153 175-256 (494)
120 PRK13369 glycerol-3-phosphate 97.5 0.00057 1.2E-08 61.0 8.5 74 63-152 151-225 (502)
121 PF13738 Pyr_redox_3: Pyridine 97.5 0.00067 1.4E-08 52.3 7.9 61 63-140 78-138 (203)
122 PRK08401 L-aspartate oxidase; 97.5 0.00053 1.2E-08 60.7 8.2 58 67-142 120-177 (466)
123 PRK08071 L-aspartate oxidase; 97.5 0.00034 7.3E-09 62.7 7.0 63 67-142 130-192 (510)
124 TIGR01176 fum_red_Fp fumarate 97.4 0.00055 1.2E-08 62.4 8.2 65 67-142 132-197 (580)
125 PRK07512 L-aspartate oxidase; 97.4 0.00039 8.4E-09 62.4 7.0 63 67-142 136-199 (513)
126 PRK09231 fumarate reductase fl 97.4 0.00053 1.1E-08 62.5 7.9 65 67-142 133-198 (582)
127 PRK05192 tRNA uridine 5-carbox 97.4 0.00056 1.2E-08 62.8 7.6 61 63-140 96-157 (618)
128 PRK07395 L-aspartate oxidase; 97.4 0.00043 9.3E-09 62.8 6.7 63 67-141 134-198 (553)
129 TIGR03219 salicylate_mono sali 97.4 0.00065 1.4E-08 58.6 7.4 68 61-147 99-166 (414)
130 PRK06069 sdhA succinate dehydr 97.4 0.00065 1.4E-08 61.7 7.7 65 67-142 137-202 (577)
131 PRK11259 solA N-methyltryptoph 97.4 0.0012 2.7E-08 55.6 8.9 62 60-140 143-204 (376)
132 TIGR02061 aprA adenosine phosp 97.3 0.00093 2E-08 61.4 8.2 65 68-142 127-193 (614)
133 KOG2844|consensus 97.3 0.00038 8.2E-09 64.2 5.5 79 63-161 183-261 (856)
134 PLN02815 L-aspartate oxidase 97.3 0.00069 1.5E-08 62.0 7.1 66 67-142 155-224 (594)
135 PLN02927 antheraxanthin epoxid 97.3 0.0012 2.6E-08 61.3 8.5 66 61-146 188-254 (668)
136 KOG2820|consensus 97.3 0.0016 3.4E-08 56.1 8.5 73 57-148 144-217 (399)
137 TIGR00136 gidA glucose-inhibit 97.3 0.001 2.2E-08 61.1 7.8 63 62-140 91-154 (617)
138 PRK09077 L-aspartate oxidase; 97.2 0.0011 2.3E-08 59.9 7.6 66 67-142 138-209 (536)
139 TIGR03364 HpnW_proposed FAD de 97.2 0.0014 3E-08 55.4 7.9 58 61-140 139-197 (365)
140 PRK07803 sdhA succinate dehydr 97.2 0.0013 2.7E-08 60.5 7.9 65 67-142 138-215 (626)
141 PRK12266 glpD glycerol-3-phosp 97.2 0.0017 3.8E-08 58.1 8.5 71 64-149 152-222 (508)
142 PRK08294 phenol 2-monooxygenas 97.2 0.0028 6E-08 58.4 9.7 78 61-145 135-215 (634)
143 TIGR02734 crtI_fam phytoene de 97.2 0.0019 4E-08 57.2 8.3 60 67-142 219-278 (502)
144 PRK01747 mnmC bifunctional tRN 97.2 0.0014 3E-08 60.5 7.6 61 63-141 404-464 (662)
145 PF05834 Lycopene_cycl: Lycope 97.2 0.0028 6E-08 54.5 8.9 64 61-142 81-144 (374)
146 KOG4254|consensus 97.1 0.00076 1.6E-08 59.9 5.3 61 66-142 263-323 (561)
147 PRK13339 malate:quinone oxidor 97.1 0.0051 1.1E-07 55.3 10.4 82 59-154 176-258 (497)
148 PRK07236 hypothetical protein; 97.1 0.0022 4.7E-08 54.9 7.4 64 64-146 97-160 (386)
149 COG2081 Predicted flavoprotein 97.0 0.0029 6.2E-08 55.3 8.0 72 65-153 109-187 (408)
150 TIGR02731 phytoene_desat phyto 97.0 0.0033 7.2E-08 54.9 8.3 64 67-140 213-276 (453)
151 COG0665 DadA Glycine/D-amino a 97.0 0.0049 1.1E-07 52.1 8.7 68 63-151 152-220 (387)
152 PF00732 GMC_oxred_N: GMC oxid 96.9 0.0017 3.6E-08 53.3 4.9 72 69-152 195-268 (296)
153 COG1233 Phytoene dehydrogenase 96.8 0.0041 8.9E-08 55.5 7.2 57 66-138 223-279 (487)
154 TIGR00275 flavoprotein, HI0933 96.8 0.0088 1.9E-07 51.9 8.9 70 66-153 104-180 (400)
155 PTZ00363 rab-GDP dissociation 96.8 0.0084 1.8E-07 53.1 8.7 60 66-140 231-290 (443)
156 PLN02612 phytoene desaturase 96.7 0.0073 1.6E-07 54.9 8.4 56 68-138 309-364 (567)
157 PRK13977 myosin-cross-reactive 96.7 0.0056 1.2E-07 56.0 7.4 67 68-143 227-296 (576)
158 TIGR02733 desat_CrtD C-3',4' d 96.7 0.0079 1.7E-07 53.2 8.2 63 66-139 231-293 (492)
159 PRK08255 salicylyl-CoA 5-hydro 96.7 0.0019 4.1E-08 60.7 4.2 61 62-151 92-152 (765)
160 TIGR03862 flavo_PP4765 unchara 96.7 0.012 2.5E-07 51.3 8.7 71 65-153 84-161 (376)
161 PRK13800 putative oxidoreducta 96.6 0.0076 1.6E-07 57.6 8.0 63 69-142 141-207 (897)
162 TIGR01810 betA choline dehydro 96.5 0.0095 2.1E-07 53.5 7.3 73 66-152 192-265 (532)
163 COG0445 GidA Flavin-dependent 96.5 0.0028 6.1E-08 57.5 3.8 62 61-138 89-156 (621)
164 PF06039 Mqo: Malate:quinone o 96.5 0.02 4.4E-07 51.1 9.0 81 59-153 173-254 (488)
165 PRK09564 coenzyme A disulfide 96.1 0.043 9.3E-07 47.7 8.9 67 67-153 191-257 (444)
166 KOG0042|consensus 96.0 0.0038 8.1E-08 56.7 2.3 73 65-147 222-294 (680)
167 COG0029 NadB Aspartate oxidase 96.0 0.014 3E-07 52.4 5.8 66 66-143 132-199 (518)
168 KOG2404|consensus 96.0 0.021 4.6E-07 49.3 6.4 72 70-153 146-219 (477)
169 PRK05329 anaerobic glycerol-3- 95.9 0.043 9.2E-07 48.4 8.4 59 68-140 260-318 (422)
170 PRK12769 putative oxidoreducta 95.9 0.042 9.2E-07 50.7 8.4 70 72-141 511-585 (654)
171 PRK07233 hypothetical protein; 95.8 0.044 9.5E-07 46.9 7.9 56 67-139 198-253 (434)
172 PRK02106 choline dehydrogenase 95.7 0.026 5.7E-07 51.0 6.4 66 73-152 206-272 (560)
173 PRK12810 gltD glutamate syntha 95.7 0.07 1.5E-06 47.3 8.9 77 73-152 335-411 (471)
174 TIGR02732 zeta_caro_desat caro 95.6 0.052 1.1E-06 48.2 7.8 60 69-140 221-284 (474)
175 KOG2852|consensus 95.6 0.032 7E-07 47.4 5.9 68 61-141 141-209 (380)
176 PRK04965 NADH:flavorubredoxin 95.5 0.11 2.4E-06 44.3 9.2 66 69-153 185-250 (377)
177 PRK06116 glutathione reductase 95.5 0.073 1.6E-06 46.6 8.1 60 68-143 209-268 (450)
178 PRK07208 hypothetical protein; 95.5 0.064 1.4E-06 47.1 7.8 62 68-140 219-280 (479)
179 TIGR01316 gltA glutamate synth 95.3 0.12 2.6E-06 45.6 8.8 80 72-153 314-398 (449)
180 PRK14989 nitrite reductase sub 95.2 0.13 2.8E-06 49.2 9.4 67 70-153 190-256 (847)
181 PRK15317 alkyl hydroperoxide r 95.2 0.12 2.5E-06 46.4 8.7 59 65-140 264-322 (517)
182 TIGR01292 TRX_reduct thioredox 95.2 0.11 2.4E-06 42.0 7.8 60 64-141 54-113 (300)
183 PRK12809 putative oxidoreducta 95.2 0.11 2.3E-06 48.0 8.4 68 74-141 496-568 (639)
184 TIGR01350 lipoamide_DH dihydro 95.1 0.12 2.6E-06 45.2 8.3 70 68-152 212-281 (461)
185 TIGR02374 nitri_red_nirB nitri 95.0 0.15 3.3E-06 48.2 9.2 65 70-153 185-249 (785)
186 PRK12831 putative oxidoreducta 95.0 0.12 2.6E-06 45.9 8.0 69 74-142 325-398 (464)
187 COG1053 SdhA Succinate dehydro 95.0 0.035 7.6E-07 50.7 4.6 65 68-142 139-204 (562)
188 PF01593 Amino_oxidase: Flavin 95.0 0.067 1.5E-06 44.5 6.0 65 59-140 201-265 (450)
189 PLN02487 zeta-carotene desatur 94.9 0.11 2.4E-06 47.6 7.7 60 69-140 297-360 (569)
190 PRK09754 phenylpropionate diox 94.9 0.21 4.5E-06 43.0 9.1 66 68-153 187-252 (396)
191 TIGR03467 HpnE squalene-associ 94.8 0.094 2E-06 44.5 6.7 56 69-140 199-254 (419)
192 TIGR01318 gltD_gamma_fam gluta 94.8 0.17 3.6E-06 45.0 8.4 70 72-141 325-399 (467)
193 TIGR02462 pyranose_ox pyranose 94.6 0.082 1.8E-06 48.2 6.0 62 79-152 225-289 (544)
194 PF13434 K_oxygenase: L-lysine 94.4 0.043 9.3E-07 47.0 3.6 71 61-142 89-161 (341)
195 TIGR03140 AhpF alkyl hydropero 94.2 0.27 5.8E-06 44.1 8.5 59 65-140 265-323 (515)
196 TIGR01789 lycopene_cycl lycope 94.1 0.18 4E-06 43.3 7.0 58 60-141 82-139 (370)
197 PRK05249 soluble pyridine nucl 94.1 0.26 5.7E-06 43.1 8.0 58 68-142 217-274 (461)
198 KOG1336|consensus 93.9 0.19 4E-06 45.0 6.6 58 70-142 258-315 (478)
199 PRK05976 dihydrolipoamide dehy 93.7 0.46 9.9E-06 41.9 8.8 62 68-142 222-283 (472)
200 TIGR03385 CoA_CoA_reduc CoA-di 93.6 0.48 1E-05 41.1 8.7 65 68-153 180-244 (427)
201 PRK06370 mercuric reductase; V 93.4 0.49 1.1E-05 41.6 8.5 61 68-142 213-273 (463)
202 TIGR01423 trypano_reduc trypan 93.4 0.45 9.8E-06 42.6 8.3 59 68-142 232-290 (486)
203 PLN02785 Protein HOTHEAD 93.2 0.27 5.8E-06 45.2 6.7 64 66-140 220-290 (587)
204 TIGR03143 AhpF_homolog putativ 93.2 0.44 9.6E-06 43.2 8.0 59 64-141 57-115 (555)
205 PRK14694 putative mercuric red 93.0 0.57 1.2E-05 41.4 8.3 58 68-143 219-276 (468)
206 COG0492 TrxB Thioredoxin reduc 92.9 0.45 9.7E-06 40.3 7.1 58 64-140 58-115 (305)
207 PF13454 NAD_binding_9: FAD-NA 92.8 0.76 1.6E-05 34.5 7.6 61 61-138 88-155 (156)
208 PRK07845 flavoprotein disulfid 92.8 0.63 1.4E-05 41.1 8.2 59 68-143 219-277 (466)
209 PF00070 Pyr_redox: Pyridine n 92.8 0.39 8.4E-06 31.9 5.4 39 68-108 41-79 (80)
210 PRK12778 putative bifunctional 92.7 0.53 1.1E-05 44.2 8.1 68 75-142 616-688 (752)
211 KOG2614|consensus 92.7 0.11 2.3E-06 45.8 3.1 26 124-149 147-172 (420)
212 TIGR01424 gluta_reduc_2 glutat 92.6 0.49 1.1E-05 41.5 7.3 58 68-142 208-265 (446)
213 KOG1346|consensus 92.6 0.18 3.8E-06 45.1 4.4 69 66-153 392-460 (659)
214 PRK13748 putative mercuric red 92.6 0.58 1.3E-05 42.0 7.9 56 69-142 312-367 (561)
215 PTZ00318 NADH dehydrogenase-li 92.6 0.57 1.2E-05 40.8 7.6 62 68-153 229-290 (424)
216 PRK08010 pyridine nucleotide-d 92.5 0.71 1.5E-05 40.3 8.2 57 68-142 200-256 (441)
217 TIGR03169 Nterm_to_SelD pyridi 92.4 0.89 1.9E-05 38.3 8.4 52 68-140 192-243 (364)
218 PF00996 GDI: GDP dissociation 92.4 0.66 1.4E-05 41.3 7.8 60 61-136 223-285 (438)
219 PRK06416 dihydrolipoamide dehy 92.3 0.84 1.8E-05 40.0 8.3 61 68-142 214-274 (462)
220 PRK14727 putative mercuric red 92.2 0.74 1.6E-05 40.8 8.0 57 69-143 230-286 (479)
221 PLN02507 glutathione reductase 92.2 0.75 1.6E-05 41.2 8.1 58 68-142 245-302 (499)
222 PLN02172 flavin-containing mon 92.1 0.72 1.6E-05 41.0 7.7 64 64-140 108-173 (461)
223 PRK07251 pyridine nucleotide-d 92.0 0.98 2.1E-05 39.4 8.3 57 68-142 199-255 (438)
224 TIGR01292 TRX_reduct thioredox 91.9 0.85 1.8E-05 36.8 7.4 61 70-142 179-240 (300)
225 TIGR02053 MerA mercuric reduct 91.9 1 2.2E-05 39.5 8.4 60 69-142 209-268 (463)
226 KOG0404|consensus 91.8 0.33 7.2E-06 40.2 4.8 59 63-140 66-124 (322)
227 TIGR01421 gluta_reduc_1 glutat 91.7 1.1 2.3E-05 39.6 8.4 59 69-142 209-267 (450)
228 PRK13984 putative oxidoreducta 91.7 0.77 1.7E-05 41.9 7.7 68 74-142 469-540 (604)
229 PRK06567 putative bifunctional 91.5 0.68 1.5E-05 45.2 7.3 71 72-142 645-730 (1028)
230 PRK12775 putative trifunctiona 91.4 0.98 2.1E-05 44.1 8.3 68 74-142 616-688 (1006)
231 COG1252 Ndh NADH dehydrogenase 91.3 0.65 1.4E-05 40.9 6.5 54 72-149 214-268 (405)
232 KOG2311|consensus 91.3 0.39 8.5E-06 43.6 5.1 58 65-138 117-184 (679)
233 PRK12771 putative glutamate sy 91.3 1 2.2E-05 40.9 7.9 68 73-141 311-381 (564)
234 PRK06115 dihydrolipoamide dehy 91.1 1.4 3.1E-05 38.9 8.5 63 68-142 216-278 (466)
235 PRK11749 dihydropyrimidine deh 90.9 1.1 2.4E-05 39.4 7.6 69 72-141 316-388 (457)
236 COG1249 Lpd Pyruvate/2-oxoglut 90.6 1.3 2.8E-05 39.6 7.8 71 68-153 215-285 (454)
237 PRK09897 hypothetical protein; 90.6 1.3 2.8E-05 40.4 7.8 51 73-139 113-165 (534)
238 PRK07818 dihydrolipoamide dehy 90.5 1.8 3.9E-05 38.1 8.6 62 68-142 214-275 (466)
239 PTZ00058 glutathione reductase 90.3 1.9 4E-05 39.5 8.7 59 69-142 280-338 (561)
240 COG1251 NirB NAD(P)H-nitrite r 90.1 0.47 1E-05 44.7 4.6 63 72-153 192-254 (793)
241 COG3486 IucD Lysine/ornithine 89.8 0.91 2E-05 40.2 6.0 74 56-145 87-162 (436)
242 PLN02546 glutathione reductase 89.8 2.3 5E-05 38.8 8.9 57 70-142 296-352 (558)
243 KOG2960|consensus 89.7 1.3 2.9E-05 36.4 6.4 85 58-143 146-237 (328)
244 PRK06912 acoL dihydrolipoamide 89.6 2.2 4.7E-05 37.6 8.3 59 68-142 212-270 (458)
245 PF07992 Pyr_redox_2: Pyridine 89.5 0.39 8.4E-06 36.5 3.2 56 73-141 64-123 (201)
246 PRK13512 coenzyme A disulfide 89.2 2.1 4.6E-05 37.4 8.0 61 69-152 191-251 (438)
247 PRK10262 thioredoxin reductase 89.2 1.5 3.2E-05 36.5 6.7 64 69-142 187-250 (321)
248 PRK06327 dihydrolipoamide dehy 89.1 2.6 5.6E-05 37.3 8.5 62 68-142 225-286 (475)
249 KOG2853|consensus 88.8 1.9 4.2E-05 37.8 7.1 72 67-153 243-330 (509)
250 TIGR03140 AhpF alkyl hydropero 88.6 2 4.2E-05 38.6 7.5 62 70-142 390-452 (515)
251 COG2072 TrkA Predicted flavopr 88.6 1.8 3.8E-05 38.4 7.1 89 35-140 54-144 (443)
252 COG3075 GlpB Anaerobic glycero 88.6 1.1 2.4E-05 39.0 5.5 66 68-149 259-324 (421)
253 PTZ00052 thioredoxin reductase 88.4 3 6.6E-05 37.3 8.5 56 70-142 225-280 (499)
254 PRK12416 protoporphyrinogen ox 88.0 1.7 3.7E-05 38.0 6.6 51 68-137 227-277 (463)
255 PRK04965 NADH:flavorubredoxin 87.6 2.1 4.4E-05 36.5 6.7 47 75-141 66-112 (377)
256 TIGR01317 GOGAT_sm_gam glutama 87.3 2.8 6.1E-05 37.4 7.7 61 79-139 348-413 (485)
257 KOG1335|consensus 87.3 4.2 9.1E-05 36.2 8.3 60 73-143 258-317 (506)
258 TIGR01372 soxA sarcosine oxida 86.8 3.6 7.8E-05 40.1 8.5 70 69-153 353-422 (985)
259 PRK11883 protoporphyrinogen ox 86.6 4.8 0.0001 34.6 8.5 57 66-139 217-274 (451)
260 TIGR01438 TGR thioredoxin and 86.6 4.1 8.9E-05 36.4 8.3 60 69-142 222-281 (484)
261 PRK12779 putative bifunctional 86.3 3.6 7.7E-05 40.1 8.2 67 74-141 491-563 (944)
262 PRK09564 coenzyme A disulfide 85.6 2.2 4.7E-05 37.0 5.9 53 73-141 62-116 (444)
263 PRK07845 flavoprotein disulfid 85.6 4.4 9.5E-05 35.8 7.9 54 72-141 97-152 (466)
264 PRK09754 phenylpropionate diox 84.9 3.1 6.7E-05 35.8 6.5 44 78-140 69-112 (396)
265 COG0446 HcaD Uncharacterized N 84.8 4.7 0.0001 33.7 7.4 59 67-141 178-238 (415)
266 PRK15317 alkyl hydroperoxide r 84.8 3.5 7.5E-05 37.0 6.9 62 70-142 389-451 (517)
267 TIGR03169 Nterm_to_SelD pyridi 84.7 2.1 4.5E-05 36.1 5.2 54 68-141 55-108 (364)
268 TIGR02374 nitri_red_nirB nitri 84.7 2.8 6.1E-05 39.8 6.6 49 74-141 61-109 (785)
269 COG2303 BetA Choline dehydroge 84.7 3.5 7.5E-05 37.5 6.9 69 73-153 208-277 (542)
270 TIGR00562 proto_IX_ox protopor 84.0 5 0.00011 34.8 7.5 56 67-139 222-278 (462)
271 PLN02676 polyamine oxidase 83.5 4.9 0.00011 35.9 7.3 42 81-139 244-285 (487)
272 PRK12814 putative NADPH-depend 83.5 5.8 0.00013 36.8 8.0 68 73-141 367-438 (652)
273 PRK07846 mycothione reductase; 83.1 5.7 0.00012 35.0 7.5 48 78-142 217-264 (451)
274 TIGR03385 CoA_CoA_reduc CoA-di 82.8 3.5 7.6E-05 35.7 6.0 48 77-140 54-103 (427)
275 PRK12770 putative glutamate sy 82.7 6.3 0.00014 33.3 7.4 70 71-142 214-288 (352)
276 PF06100 Strep_67kDa_ant: Stre 82.1 5.6 0.00012 36.1 7.0 58 73-140 213-274 (500)
277 TIGR03452 mycothione_red mycot 81.8 6.6 0.00014 34.6 7.4 49 77-142 219-267 (452)
278 TIGR01424 gluta_reduc_2 glutat 81.5 7.3 0.00016 34.1 7.6 51 70-141 93-143 (446)
279 PRK10262 thioredoxin reductase 81.4 9.5 0.00021 31.6 7.9 57 65-140 61-117 (321)
280 PRK14989 nitrite reductase sub 81.3 4.1 8.8E-05 39.2 6.3 48 75-141 67-114 (847)
281 PRK06467 dihydrolipoamide dehy 80.9 8.9 0.00019 33.9 7.9 61 69-143 217-277 (471)
282 COG3634 AhpF Alkyl hydroperoxi 80.3 3.3 7.2E-05 36.5 4.8 59 67-140 266-325 (520)
283 PF00743 FMO-like: Flavin-bind 79.4 9.5 0.00021 34.7 7.7 65 64-140 81-150 (531)
284 PLN02268 probable polyamine ox 79.2 5.9 0.00013 34.3 6.1 42 80-138 209-250 (435)
285 PRK06327 dihydrolipoamide dehy 79.1 8.1 0.00018 34.1 7.1 52 73-140 106-157 (475)
286 PRK09853 putative selenate red 78.7 10 0.00022 37.4 8.0 77 73-153 713-790 (1019)
287 PTZ00153 lipoamide dehydrogena 78.6 12 0.00025 35.2 8.2 71 69-142 355-429 (659)
288 COG1148 HdrA Heterodisulfide r 78.5 4.9 0.00011 36.7 5.4 71 72-154 419-491 (622)
289 KOG3855|consensus 78.0 11 0.00025 33.7 7.4 70 61-145 144-222 (481)
290 PRK06292 dihydrolipoamide dehy 77.9 11 0.00023 33.0 7.4 61 68-143 211-271 (460)
291 COG3573 Predicted oxidoreducta 77.5 9.7 0.00021 33.5 6.8 73 68-142 154-230 (552)
292 TIGR01421 gluta_reduc_1 glutat 77.4 9 0.00019 33.7 6.8 48 71-141 95-142 (450)
293 KOG1399|consensus 76.6 13 0.00028 33.3 7.5 69 60-140 83-153 (448)
294 PRK13512 coenzyme A disulfide 76.0 9.2 0.0002 33.4 6.4 50 78-141 69-118 (438)
295 PRK06467 dihydrolipoamide dehy 75.8 10 0.00022 33.5 6.8 48 75-140 101-148 (471)
296 PRK06116 glutathione reductase 75.4 12 0.00026 32.7 7.0 46 73-141 99-144 (450)
297 COG1232 HemY Protoporphyrinoge 75.1 9 0.00019 34.2 6.2 56 65-137 210-265 (444)
298 PLN02576 protoporphyrinogen ox 74.8 14 0.0003 32.5 7.3 48 77-137 246-294 (496)
299 PRK05249 soluble pyridine nucl 74.7 17 0.00036 31.8 7.7 52 72-141 99-150 (461)
300 PLN02507 glutathione reductase 74.5 17 0.00036 32.6 7.8 51 73-141 130-180 (499)
301 PRK05976 dihydrolipoamide dehy 73.5 18 0.00039 31.9 7.7 52 75-140 100-154 (472)
302 PF13434 K_oxygenase: L-lysine 72.8 8.2 0.00018 33.0 5.2 48 80-138 292-339 (341)
303 PLN02546 glutathione reductase 70.9 14 0.00031 33.8 6.6 50 69-141 180-229 (558)
304 KOG1439|consensus 70.5 14 0.0003 32.9 6.1 56 67-139 232-287 (440)
305 PRK06416 dihydrolipoamide dehy 69.2 20 0.00044 31.3 7.1 49 73-140 98-146 (462)
306 TIGR03315 Se_ygfK putative sel 68.4 23 0.0005 34.9 7.7 75 74-153 712-787 (1012)
307 PLN02568 polyamine oxidase 68.1 29 0.00063 31.6 8.0 51 69-138 244-294 (539)
308 PRK06370 mercuric reductase; V 67.9 17 0.00036 31.9 6.2 47 72-141 99-146 (463)
309 KOG3923|consensus 67.6 4.1 8.9E-05 34.9 2.2 27 60-86 144-170 (342)
310 COG3486 IucD Lysine/ornithine 66.0 12 0.00026 33.3 4.8 61 71-142 279-342 (436)
311 PF09894 DUF2121: Uncharacteri 63.0 21 0.00046 28.4 5.3 33 70-103 46-78 (194)
312 TIGR03452 mycothione_red mycot 62.4 13 0.00028 32.8 4.4 42 79-142 104-145 (452)
313 COG4529 Uncharacterized protei 62.0 54 0.0012 29.7 8.2 77 60-151 93-175 (474)
314 PLN02852 ferredoxin-NADP+ redu 60.9 41 0.00089 30.4 7.4 71 69-140 268-354 (491)
315 PRK07251 pyridine nucleotide-d 59.3 43 0.00092 29.1 7.1 48 75-141 84-131 (438)
316 PRK07846 mycothione reductase; 57.3 22 0.00047 31.3 5.0 17 125-141 125-141 (451)
317 PRK06115 dihydrolipoamide dehy 56.6 41 0.00088 29.7 6.6 15 126-140 134-148 (466)
318 PLN02529 lysine-specific histo 55.8 55 0.0012 31.2 7.6 39 81-137 366-404 (738)
319 PRK08010 pyridine nucleotide-d 55.3 61 0.0013 28.2 7.5 43 80-141 90-132 (441)
320 PTZ00318 NADH dehydrogenase-li 55.3 37 0.0008 29.5 6.1 58 73-140 68-125 (424)
321 TIGR01372 soxA sarcosine oxida 54.6 54 0.0012 32.1 7.6 64 72-140 220-286 (985)
322 KOG1336|consensus 54.0 29 0.00062 31.4 5.2 42 78-138 138-179 (478)
323 COG0493 GltD NADPH-dependent g 52.9 7.9 0.00017 34.7 1.5 70 72-141 311-386 (457)
324 COG1231 Monoamine oxidase [Ami 52.8 53 0.0011 29.5 6.6 51 69-136 208-258 (450)
325 KOG1346|consensus 52.7 18 0.0004 32.7 3.7 94 25-142 214-313 (659)
326 PLN02328 lysine-specific histo 52.6 51 0.0011 31.8 6.9 53 67-139 434-486 (808)
327 COG0492 TrxB Thioredoxin reduc 50.1 77 0.0017 26.7 7.0 67 70-152 181-248 (305)
328 PTZ00058 glutathione reductase 50.0 60 0.0013 29.8 6.7 18 124-141 198-215 (561)
329 COG1251 NirB NAD(P)H-nitrite r 49.9 34 0.00073 32.8 5.1 47 77-142 69-115 (793)
330 TIGR02053 MerA mercuric reduct 48.6 41 0.0009 29.4 5.4 46 75-141 96-141 (463)
331 TIGR01438 TGR thioredoxin and 47.8 73 0.0016 28.4 6.9 49 75-141 108-156 (484)
332 PLN03000 amine oxidase 47.0 72 0.0016 31.2 7.0 51 67-137 378-428 (881)
333 COG1249 Lpd Pyruvate/2-oxoglut 46.7 86 0.0019 28.1 7.1 18 125-142 132-149 (454)
334 PLN02976 amine oxidase 45.9 80 0.0017 33.0 7.3 54 66-137 932-994 (1713)
335 PRK12770 putative glutamate sy 45.6 24 0.00052 29.7 3.3 55 72-139 73-129 (352)
336 TIGR01350 lipoamide_DH dihydro 45.0 88 0.0019 27.2 6.9 16 125-140 128-143 (461)
337 PRK06912 acoL dihydrolipoamide 43.8 95 0.0021 27.2 6.9 16 125-140 129-144 (458)
338 PTZ00052 thioredoxin reductase 43.2 20 0.00044 32.0 2.6 17 125-141 141-157 (499)
339 PRK14727 putative mercuric red 42.7 75 0.0016 28.1 6.1 16 126-141 148-163 (479)
340 TIGR00137 gid_trmFO tRNA:m(5)U 40.8 87 0.0019 28.0 6.1 26 59-84 89-115 (433)
341 PRK09853 putative selenate red 40.3 58 0.0013 32.3 5.3 43 71-140 593-635 (1019)
342 PRK11749 dihydropyrimidine deh 40.0 27 0.00057 30.7 2.8 46 68-139 191-236 (457)
343 TIGR03143 AhpF_homolog putativ 39.0 1.3E+02 0.0027 27.4 7.1 60 71-142 182-248 (555)
344 PRK14694 putative mercuric red 39.0 1E+02 0.0022 27.1 6.4 44 80-141 110-153 (468)
345 PRK13748 putative mercuric red 36.5 1.2E+02 0.0025 27.3 6.4 16 126-141 230-245 (561)
346 PRK12831 putative oxidoreducta 35.9 23 0.0005 31.4 1.8 47 69-139 193-239 (464)
347 TIGR01318 gltD_gamma_fam gluta 33.0 44 0.00096 29.6 3.1 45 71-141 195-239 (467)
348 KOG0685|consensus 32.3 44 0.00096 30.3 2.9 59 61-135 214-281 (498)
349 TIGR01423 trypano_reduc trypan 29.3 2E+02 0.0044 25.7 6.7 17 125-141 148-164 (486)
350 PRK12779 putative bifunctional 28.9 71 0.0015 31.3 3.9 46 69-139 358-403 (944)
351 KOG1335|consensus 28.8 1.3E+02 0.0028 27.1 5.1 13 126-138 171-183 (506)
352 PTZ00153 lipoamide dehydrogena 28.1 2.2E+02 0.0047 26.8 6.9 18 125-142 271-288 (659)
353 KOG1238|consensus 27.0 1.4E+02 0.003 28.1 5.3 49 81-140 268-318 (623)
354 KOG2665|consensus 26.8 3.1E+02 0.0067 24.2 7.0 74 63-153 192-267 (453)
355 PRK06292 dihydrolipoamide dehy 26.6 1.9E+02 0.0041 25.2 5.9 15 125-139 127-141 (460)
356 TIGR01317 GOGAT_sm_gam glutama 26.0 59 0.0013 29.0 2.7 45 69-139 195-239 (485)
357 PRK12778 putative bifunctional 25.7 53 0.0011 31.0 2.4 46 69-139 483-528 (752)
358 PF07282 OrfB_Zn_ribbon: Putat 25.4 92 0.002 19.7 2.9 19 67-85 2-20 (69)
359 KOG0405|consensus 25.2 2.5E+02 0.0054 25.1 6.2 59 68-142 227-289 (478)
360 PRK07818 dihydrolipoamide dehy 25.0 3.5E+02 0.0075 23.7 7.3 17 125-141 132-148 (466)
361 COG4079 Uncharacterized protei 24.7 1.1E+02 0.0024 25.5 3.8 23 60-86 40-62 (293)
362 KOG0399|consensus 24.4 2.1E+02 0.0046 29.7 6.1 76 78-156 1988-2070(2142)
363 PF07156 Prenylcys_lyase: Pren 24.2 2.6E+02 0.0057 24.3 6.3 67 59-139 118-186 (368)
364 KOG0029|consensus 22.5 1.7E+02 0.0036 26.6 4.9 40 81-136 228-267 (501)
365 PF07338 DUF1471: Protein of u 22.3 93 0.002 19.5 2.3 23 64-86 15-37 (56)
366 PF01906 YbjQ_1: Putative heav 21.9 2.9E+02 0.0062 19.3 5.2 30 66-95 58-87 (105)
367 cd08344 MhqB_like_N N-terminal 20.6 2.7E+02 0.006 18.6 6.0 77 8-87 7-85 (112)
368 PRK12775 putative trifunctiona 20.2 79 0.0017 31.2 2.5 23 68-90 481-503 (1006)
No 1
>KOG2415|consensus
Probab=100.00 E-value=1e-38 Score=273.94 Aligned_cols=159 Identities=69% Similarity=1.177 Sum_probs=153.5
Q ss_pred CceeeeceecccchhhhccccccCCCCCcccceeceEEEEcCCceEEecCCCCCCCCCCCcEEEEhHHHHHHHHHHHHHC
Q psy9486 1 GHILSGAVIDPIALNELLPDWKDLGAPLNTPVQEDKFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAM 80 (165)
Q Consensus 1 ~h~lsG~~l~~~~l~el~P~~~~~~~p~~~~v~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~i~r~~~d~~L~~~A~~~ 80 (165)
+|+|||+||+|.+|+||+|+|++.++|++++|+++.|+|++++.++++|.+. .|.++|+|+++.+++.+||.++|+++
T Consensus 119 ghtlSGaviep~aldEL~P~wke~~apl~t~vT~d~~~fLt~~~~i~vPv~~--pm~NhGNYvv~L~~~v~wLg~kAEe~ 196 (621)
T KOG2415|consen 119 GHTLSGAVIEPGALDELLPDWKEDGAPLNTPVTSDKFKFLTGKGRISVPVPS--PMDNHGNYVVSLGQLVRWLGEKAEEL 196 (621)
T ss_pred CceecceeeccchhhhhCcchhhcCCcccccccccceeeeccCceeecCCCc--ccccCCcEEEEHHHHHHHHHHHHHhh
Confidence 6999999999999999999999999999999999999999999888888753 58899999999999999999999999
Q ss_pred CCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcccchHHHhhcCCCCCCCCCC
Q psy9486 81 GVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLTKSLSSRFNLRGQCMSSG 160 (165)
Q Consensus 81 Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l~~~l~~~~gl~~~~~~~~ 160 (165)
||||+.+.++.++++++||.|.||.|+|+||+++|.|+++|++|+++.|+++|.|+|++++|+++++++|+|+..++||-
T Consensus 197 GvEiyPg~aaSevly~edgsVkGiaT~D~GI~k~G~pKd~FerGme~hak~TifAEGc~G~Lskqi~kkf~Lr~n~e~qt 276 (621)
T KOG2415|consen 197 GVEIYPGFAASEVLYDEDGSVKGIATNDVGISKDGAPKDTFERGMEFHAKVTIFAEGCHGSLSKQIIKKFDLRENCEPQT 276 (621)
T ss_pred CceeccccchhheeEcCCCcEeeEeeccccccCCCCccccccccceecceeEEEeccccchhHHHHHHHhCcccCCCcce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred C
Q psy9486 161 P 161 (165)
Q Consensus 161 ~ 161 (165)
|
T Consensus 277 Y 277 (621)
T KOG2415|consen 277 Y 277 (621)
T ss_pred e
Confidence 6
No 2
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=99.74 E-value=2.1e-17 Score=142.43 Aligned_cols=128 Identities=31% Similarity=0.571 Sum_probs=105.3
Q ss_pred CceeeeceecccchhhhccccccCCCCCcccceeceEEEEcCCceEEecCCCCCCCCCCCcEEEEhHHHHHHHHHHHHHC
Q psy9486 1 GHILSGAVIDPIALNELLPDWKDLGAPLNTPVQEDKFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAM 80 (165)
Q Consensus 1 ~h~lsG~~l~~~~l~el~P~~~~~~~p~~~~v~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~i~r~~~d~~L~~~A~~~ 80 (165)
.|+++|+.++++.+++++|++... +++.++...+++++....+..+. ..+|+++|..||+||+++|+++
T Consensus 40 ~k~~~~~~~~~~~l~~l~~~~~~~---i~~~v~~~~~~~~~~~~~~~~~~--------~~~y~v~R~~fd~~La~~A~~a 108 (396)
T COG0644 40 AKPCCGGGLSPRALEELIPDFDEE---IERKVTGARIYFPGEKVAIEVPV--------GEGYIVDRAKFDKWLAERAEEA 108 (396)
T ss_pred CCccccceechhhHHHhCCCcchh---hheeeeeeEEEecCCceEEecCC--------CceEEEEhHHhhHHHHHHHHHc
Confidence 378899999999999999999863 77899999999985434444432 4489999999999999999999
Q ss_pred CCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcccchHHHhhcCCCCCCCCCC
Q psy9486 81 GVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLTKSLSSRFNLRGQCMSSG 160 (165)
Q Consensus 81 Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l~~~l~~~~gl~~~~~~~~ 160 (165)
|++++.+++|++++.++++.++++...+ .+++||+||+|+|++|.++++ +|+. ..+|++
T Consensus 109 Gae~~~~~~~~~~~~~~~~~~~~~~~~~----------------~e~~a~~vI~AdG~~s~l~~~----lg~~-~~~~~~ 167 (396)
T COG0644 109 GAELYPGTRVTGVIREDDGVVVGVRAGD----------------DEVRAKVVIDADGVNSALARK----LGLK-DRKPED 167 (396)
T ss_pred CCEEEeceEEEEEEEeCCcEEEEEEcCC----------------EEEEcCEEEECCCcchHHHHH----hCCC-CCChhh
Confidence 9999999999999997556666655543 589999999999999998888 6766 344444
No 3
>PRK10015 oxidoreductase; Provisional
Probab=99.72 E-value=9.8e-17 Score=139.98 Aligned_cols=137 Identities=24% Similarity=0.454 Sum_probs=112.1
Q ss_pred ceeeeceecccchhhhccccccCCCCCcccceeceEEEEcCCceEEecCCCCC-CCCCCCcEEEEhHHHHHHHHHHHHHC
Q psy9486 2 HILSGAVIDPIALNELLPDWKDLGAPLNTPVQEDKFAYLTKSKRIGIPILPGM-PMNNHGNYVVRLGHVVKWLGEQAEAM 80 (165)
Q Consensus 2 h~lsG~~l~~~~l~el~P~~~~~~~p~~~~v~~~~~~~~~~~~~l~i~~~~~~-~~~~~~~~~i~r~~~d~~L~~~A~~~ 80 (165)
++++|+.++.+.+++++|++.. ..|+++.+..+.+++++.++.+.++|.... ...+..+|++.|..||+||.++|++.
T Consensus 43 k~~~gg~i~~~~~~~l~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~R~~fd~~L~~~a~~~ 121 (429)
T PRK10015 43 KNMTGGRLYAHTLEAIIPGFAA-SAPVERKVTREKISFLTEESAVTLDFHREQPDVPQHASYTVLRNRLDPWLMEQAEQA 121 (429)
T ss_pred ccccCceeecccHHHHcccccc-cCCccccccceeEEEEeCCCceEeecccCCCCCCCcCceEeehhHHHHHHHHHHHHc
Confidence 5688999999999999998864 578889999999999987777777764321 12234689999999999999999999
Q ss_pred CCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcccchHHHhhcCCCCCCCCCC
Q psy9486 81 GVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLTKSLSSRFNLRGQCMSSG 160 (165)
Q Consensus 81 Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l~~~l~~~~gl~~~~~~~~ 160 (165)
||+++.+++|+++..+ ++++++|.+.+ .+++|++||+|+|++|.++++ +|+.+..+|++
T Consensus 122 Gv~i~~~~~V~~i~~~-~~~v~~v~~~~----------------~~i~A~~VI~AdG~~s~v~~~----lg~~~~~~~~~ 180 (429)
T PRK10015 122 GAQFIPGVRVDALVRE-GNKVTGVQAGD----------------DILEANVVILADGVNSMLGRS----LGMVPASDPHH 180 (429)
T ss_pred CCEEECCcEEEEEEEe-CCEEEEEEeCC----------------eEEECCEEEEccCcchhhhcc----cCCCcCCCcCe
Confidence 9999999999999875 57888887653 479999999999999988877 77765454443
No 4
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=99.71 E-value=1.3e-16 Score=138.95 Aligned_cols=135 Identities=24% Similarity=0.461 Sum_probs=110.3
Q ss_pred ceeeeceecccchhhhccccccCCCCCcccceeceEEEEcCCceEEecCCCCC-CCCCCCcEEEEhHHHHHHHHHHHHHC
Q psy9486 2 HILSGAVIDPIALNELLPDWKDLGAPLNTPVQEDKFAYLTKSKRIGIPILPGM-PMNNHGNYVVRLGHVVKWLGEQAEAM 80 (165)
Q Consensus 2 h~lsG~~l~~~~l~el~P~~~~~~~p~~~~v~~~~~~~~~~~~~l~i~~~~~~-~~~~~~~~~i~r~~~d~~L~~~A~~~ 80 (165)
|+++|+.++++.+++++|+|.. ..|+++.+..+.++|+++++.+.+++.... ......+|.+.|..||+||.++|++.
T Consensus 43 k~~~gg~l~~~~~e~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~R~~fD~~L~~~a~~~ 121 (428)
T PRK10157 43 KNVTGGRLYAHSLEHIIPGFAD-SAPVERLITHEKLAFMTEKSAMTMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAEEA 121 (428)
T ss_pred cccccceechhhHHHHhhhhhh-cCcccceeeeeeEEEEcCCCceeeccccccccCCCCCceeeEHHHHHHHHHHHHHHC
Confidence 6789999999999999999865 678888888888999988877777775331 12234589999999999999999999
Q ss_pred CCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcccchHHHhhcCCCCCCCC
Q psy9486 81 GVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLTKSLSSRFNLRGQCMS 158 (165)
Q Consensus 81 Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l~~~l~~~~gl~~~~~~ 158 (165)
||+|+++++|+++..+ ++++++|.+. +.+++|++||+|+|++|.++++ +|+....+|
T Consensus 122 Gv~i~~~~~V~~i~~~-~g~v~~v~~~----------------g~~i~A~~VI~A~G~~s~l~~~----lgl~~~~~~ 178 (428)
T PRK10157 122 GAQLITGIRVDNLVQR-DGKVVGVEAD----------------GDVIEAKTVILADGVNSILAEK----LGMAKRVKP 178 (428)
T ss_pred CCEEECCCEEEEEEEe-CCEEEEEEcC----------------CcEEECCEEEEEeCCCHHHHHH----cCCCCCCCC
Confidence 9999999999999875 5777777643 2479999999999999877766 788754444
No 5
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=99.09 E-value=3.8e-10 Score=90.92 Aligned_cols=99 Identities=24% Similarity=0.358 Sum_probs=76.4
Q ss_pred EEecCCCCCCCCCCCcEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCe
Q psy9486 46 IGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGM 125 (165)
Q Consensus 46 l~i~~~~~~~~~~~~~~~i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~ 125 (165)
+.++|.+. ..+.|+.+..++..+|+.+|.++|++|+..+.|+++++.+++||.||.+++.-+...|.|+|+ .
T Consensus 79 lgi~y~~~----~~g~~v~d~~~~~s~L~s~a~~aGakifn~~~vEDvi~r~~~rV~GvViNWt~V~~~glHvDP----l 150 (230)
T PF01946_consen 79 LGIPYEEY----GDGYYVADSVEFTSTLASKAIDAGAKIFNLTSVEDVIVREDDRVAGVVINWTPVEMAGLHVDP----L 150 (230)
T ss_dssp HT---EE-----SSEEEES-HHHHHHHHHHHHHTTTEEEEETEEEEEEEEECSCEEEEEEEEEHHHHTT--T-B-----E
T ss_pred CCceeEEe----CCeEEEEcHHHHHHHHHHHHhcCCCEEEeeeeeeeeEEEcCCeEEEEEEEehHHhHhhcCCCc----c
Confidence 45555421 245778899999999999999999999999999999987558999999999999999999875 7
Q ss_pred EEEcCEEEEcccCCcccchHHHhhcCC
Q psy9486 126 ELHAKVTIFAEGCHGHLTKSLSSRFNL 152 (165)
Q Consensus 126 ~i~Ak~VI~A~G~~s~l~~~l~~~~gl 152 (165)
.|+||+||+|||..+.+.+.+.++..+
T Consensus 151 ~i~ak~ViDaTGHda~v~~~~~kk~~~ 177 (230)
T PF01946_consen 151 TIRAKVVIDATGHDAEVVRVLAKKLKL 177 (230)
T ss_dssp EEEESEEEE---SSSSSTSHHHHHHHH
T ss_pred eEEEeEEEeCCCCchHHHHHHHHHhhh
Confidence 899999999999999999888887644
No 6
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=99.09 E-value=9.3e-10 Score=90.44 Aligned_cols=89 Identities=21% Similarity=0.305 Sum_probs=73.5
Q ss_pred CCcEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccC
Q psy9486 59 HGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGC 138 (165)
Q Consensus 59 ~~~~~i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~ 138 (165)
.+.|++++..|+.+|.++|+++|++|+++++|.+++.+++++|+||.+++..++.+|.+.+ ...|+|++||+|+|.
T Consensus 96 ~g~~~vd~~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~----~~~i~Ak~VI~ATG~ 171 (257)
T PRK04176 96 DGLYVADSVEAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVD----PLTIEAKAVVDATGH 171 (257)
T ss_pred CcceeccHHHHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCC----cEEEEcCEEEEEeCC
Confidence 4568899999999999999999999999999999998655599999887644334443322 257999999999999
Q ss_pred CcccchHHHhhcC
Q psy9486 139 HGHLTKSLSSRFN 151 (165)
Q Consensus 139 ~s~l~~~l~~~~g 151 (165)
++.+.+.+.++..
T Consensus 172 ~a~v~~~l~~~~~ 184 (257)
T PRK04176 172 DAEVVSVLARKGP 184 (257)
T ss_pred CcHHHHHHHHHcC
Confidence 9999999888764
No 7
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=99.06 E-value=2.4e-09 Score=87.92 Aligned_cols=90 Identities=18% Similarity=0.275 Sum_probs=75.2
Q ss_pred cEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCC-cEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCC
Q psy9486 61 NYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDG-SVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH 139 (165)
Q Consensus 61 ~~~i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g-~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~ 139 (165)
.|+.++.++.++|.++|+++||++++++.|.+++.++++ +|.||.+++..++.+|.+.+ ...++|++||+|+|..
T Consensus 94 ~~~~~~~el~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d----~~~i~Ak~VVdATG~~ 169 (254)
T TIGR00292 94 YVVADSAEFISTLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVD----PLTQRSRVVVDATGHD 169 (254)
T ss_pred eEEeeHHHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCC----CEEEEcCEEEEeecCC
Confidence 456789999999999999999999999999999986432 79999998755555554332 2589999999999999
Q ss_pred cccchHHHhhcCCCC
Q psy9486 140 GHLTKSLSSRFNLRG 154 (165)
Q Consensus 140 s~l~~~l~~~~gl~~ 154 (165)
+.+.+.+.+++++..
T Consensus 170 a~v~~~l~~~~~~~~ 184 (254)
T TIGR00292 170 AEIVAVCAKKIVLED 184 (254)
T ss_pred chHHHHHHHHcCccc
Confidence 999999999998765
No 8
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=98.94 E-value=4.9e-09 Score=84.77 Aligned_cols=88 Identities=23% Similarity=0.373 Sum_probs=78.3
Q ss_pred CCcEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccC
Q psy9486 59 HGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGC 138 (165)
Q Consensus 59 ~~~~~i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~ 138 (165)
.+-|+.+-..|..-|+.+|.++|++|+..+.|+++++.++.+|+||.+++.-+...|.++|+ ..++|++||+|||.
T Consensus 101 ~g~~v~ds~e~~skl~~~a~~aGaki~n~~~veDvi~r~~~rVaGvVvNWt~V~~~~lhvDP----l~i~a~~VvDaTGH 176 (262)
T COG1635 101 DGYYVADSAEFASKLAARALDAGAKIFNGVSVEDVIVRDDPRVAGVVVNWTPVQMAGLHVDP----LTIRAKAVVDATGH 176 (262)
T ss_pred CceEEecHHHHHHHHHHHHHhcCceeeecceEEEEEEecCCceEEEEEecchhhhcccccCc----ceeeEEEEEeCCCC
Confidence 45678888999999999999999999999999999997444899999999888888988875 68999999999999
Q ss_pred CcccchHHHhhc
Q psy9486 139 HGHLTKSLSSRF 150 (165)
Q Consensus 139 ~s~l~~~l~~~~ 150 (165)
.+.+.+.+.++-
T Consensus 177 da~v~~~~~kr~ 188 (262)
T COG1635 177 DAEVVSFLAKRI 188 (262)
T ss_pred chHHHHHHHHhc
Confidence 999988777665
No 9
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=98.93 E-value=4.1e-09 Score=93.03 Aligned_cols=71 Identities=25% Similarity=0.382 Sum_probs=59.9
Q ss_pred CCcEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccC
Q psy9486 59 HGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGC 138 (165)
Q Consensus 59 ~~~~~i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~ 138 (165)
..+|.++|..||++|.+.|++.||+++.+ +|.++..+++|.|++|++.+ |.+++||++|+|+|.
T Consensus 146 ~~ayhlDR~~fd~~L~~~A~~~Gv~~~~g-~V~~v~~~~~g~i~~v~~~~---------------g~~i~ad~~IDASG~ 209 (454)
T PF04820_consen 146 NYAYHLDRAKFDQFLRRHAEERGVEVIEG-TVVDVELDEDGRITAVRLDD---------------GRTIEADFFIDASGR 209 (454)
T ss_dssp S-EEEEEHHHHHHHHHHHHHHTT-EEEET--EEEEEE-TTSEEEEEEETT---------------SEEEEESEEEE-SGG
T ss_pred CeeEEEeHHHHHHHHHHHHhcCCCEEEeC-EEEEEEEcCCCCEEEEEECC---------------CCEEEEeEEEECCCc
Confidence 45899999999999999999999999988 58888887789999999986 578999999999999
Q ss_pred CcccchH
Q psy9486 139 HGHLTKS 145 (165)
Q Consensus 139 ~s~l~~~ 145 (165)
.+.|.++
T Consensus 210 ~s~L~~~ 216 (454)
T PF04820_consen 210 RSLLARK 216 (454)
T ss_dssp G-CCCCC
T ss_pred cchhhHh
Confidence 9999887
No 10
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=98.65 E-value=1.5e-07 Score=77.57 Aligned_cols=76 Identities=26% Similarity=0.388 Sum_probs=63.4
Q ss_pred CCcEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccC
Q psy9486 59 HGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGC 138 (165)
Q Consensus 59 ~~~~~i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~ 138 (165)
..+..++-..|.++|.+.++++|++|+++++|++|..+ +++|.||++.+ | +++|+.||+|+|.
T Consensus 139 ~~~g~i~~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~-~~~v~gv~~~~---------------g-~i~ad~vV~a~G~ 201 (358)
T PF01266_consen 139 PEGGVIDPRRLIQALAAEAQRAGVEIRTGTEVTSIDVD-GGRVTGVRTSD---------------G-EIRADRVVLAAGA 201 (358)
T ss_dssp TTEEEEEHHHHHHHHHHHHHHTT-EEEESEEEEEEEEE-TTEEEEEEETT---------------E-EEEECEEEE--GG
T ss_pred cccccccccchhhhhHHHHHHhhhhccccccccchhhc-ccccccccccc---------------c-ccccceeEecccc
Confidence 44667899999999999999999999999999999996 78899999987 3 5999999999999
Q ss_pred CcccchHHHhhcCCCC
Q psy9486 139 HGHLTKSLSSRFNLRG 154 (165)
Q Consensus 139 ~s~l~~~l~~~~gl~~ 154 (165)
++ .++.+..++..
T Consensus 202 ~s---~~l~~~~~~~~ 214 (358)
T PF01266_consen 202 WS---PQLLPLLGLDL 214 (358)
T ss_dssp GH---HHHHHTTTTSS
T ss_pred cc---eeeeecccccc
Confidence 86 66777777643
No 11
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=98.59 E-value=6.4e-07 Score=75.62 Aligned_cols=70 Identities=21% Similarity=0.254 Sum_probs=58.7
Q ss_pred CCcEEEEhHHHHHHHHHHHHHCC-CEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEccc
Q psy9486 59 HGNYVVRLGHVVKWLGEQAEAMG-VEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEG 137 (165)
Q Consensus 59 ~~~~~i~r~~~d~~L~~~A~~~G-v~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G 137 (165)
..+|.++|..++++|.+.+++.| ++|+.+++|+++..+ ++.+ .|.+.+ |..+.||+||.|+|
T Consensus 98 ~~~~~i~r~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~-~~~~-~v~~~~---------------g~~~~~~~vi~adG 160 (385)
T TIGR01988 98 ALGYVVENRVLQQALWERLQEYPNVTLLCPARVVELPRH-SDHV-ELTLDD---------------GQQLRARLLVGADG 160 (385)
T ss_pred ccEEEEEcHHHHHHHHHHHHhCCCcEEecCCeEEEEEec-CCee-EEEECC---------------CCEEEeeEEEEeCC
Confidence 45799999999999999999998 999999999999875 4443 355543 35799999999999
Q ss_pred CCcccchH
Q psy9486 138 CHGHLTKS 145 (165)
Q Consensus 138 ~~s~l~~~ 145 (165)
.+|.+.++
T Consensus 161 ~~S~vr~~ 168 (385)
T TIGR01988 161 ANSKVRQL 168 (385)
T ss_pred CCCHHHHH
Confidence 99988766
No 12
>PRK08013 oxidoreductase; Provisional
Probab=98.58 E-value=6.7e-07 Score=77.03 Aligned_cols=73 Identities=14% Similarity=0.173 Sum_probs=59.5
Q ss_pred CcEEEEhHHHHHHHHHHHHHC-CCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccC
Q psy9486 60 GNYVVRLGHVVKWLGEQAEAM-GVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGC 138 (165)
Q Consensus 60 ~~~~i~r~~~d~~L~~~A~~~-Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~ 138 (165)
.+|++.|..++++|.+++.+. |++++.+++|+++..++ +.| .|...+ |.+++|++||.|+|.
T Consensus 104 ~~~~i~r~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~-~~v-~v~~~~---------------g~~i~a~lvVgADG~ 166 (400)
T PRK08013 104 LGHIIENSVIHYALWQKAQQSSDITLLAPAELQQVAWGE-NEA-FLTLKD---------------GSMLTARLVVGADGA 166 (400)
T ss_pred cEEEEEhHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecC-CeE-EEEEcC---------------CCEEEeeEEEEeCCC
Confidence 479999999999999999985 89999999999998753 322 344433 357999999999999
Q ss_pred CcccchHHHhhcCCC
Q psy9486 139 HGHLTKSLSSRFNLR 153 (165)
Q Consensus 139 ~s~l~~~l~~~~gl~ 153 (165)
+|.+.++ +++.
T Consensus 167 ~S~vR~~----~~~~ 177 (400)
T PRK08013 167 NSWLRNK----ADIP 177 (400)
T ss_pred CcHHHHH----cCCC
Confidence 9999777 5654
No 13
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=98.55 E-value=9.8e-07 Score=75.71 Aligned_cols=72 Identities=21% Similarity=0.225 Sum_probs=53.7
Q ss_pred EEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccC-CCCCCCCCCcCeEEEcCEEEEcccCCcc
Q psy9486 63 VVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAK-DGSPKDTFARGMELHAKVTIFAEGCHGH 141 (165)
Q Consensus 63 ~i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~-~g~~~~~~~~g~~i~Ak~VI~A~G~~s~ 141 (165)
+++|..||++|.++|.+.|++++.+ +|+++..+ ++. +.|.+.+ |.+. +|+ ..+++|++||+|+|++|.
T Consensus 88 ~~~r~~fd~~L~~~a~~~G~~v~~~-~v~~v~~~-~~~-~~v~~~~-~~~~~~~~-------~~~i~a~~VI~AdG~~S~ 156 (388)
T TIGR02023 88 MVRREVFDSYLRERAQKAGAELIHG-LFLKLERD-RDG-VTLTYRT-PKKGAGGE-------KGSVEADVVIGADGANSP 156 (388)
T ss_pred eeeHHHHHHHHHHHHHhCCCEEEee-EEEEEEEc-CCe-EEEEEEe-ccccCCCc-------ceEEEeCEEEECCCCCcH
Confidence 5999999999999999999999865 69998775 343 3454432 1000 111 147999999999999998
Q ss_pred cchH
Q psy9486 142 LTKS 145 (165)
Q Consensus 142 l~~~ 145 (165)
++++
T Consensus 157 v~r~ 160 (388)
T TIGR02023 157 VAKE 160 (388)
T ss_pred HHHH
Confidence 8776
No 14
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=98.55 E-value=1.1e-06 Score=76.15 Aligned_cols=76 Identities=14% Similarity=0.192 Sum_probs=54.2
Q ss_pred EEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEc-CCCcEEEEEEcccc-ccCCCCCCCCCCcCeEEEcCEEEEcccCC
Q psy9486 62 YVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYH-GDGSVKGIATGDVG-IAKDGSPKDTFARGMELHAKVTIFAEGCH 139 (165)
Q Consensus 62 ~~i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~-~~g~V~GV~~~~~g-~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~ 139 (165)
++++|..||++|.++|.++||+++.++ +.++... ..+.+.+|+..... -...|+. .+++|++||+|+|++
T Consensus 88 ~~v~R~~~d~~L~~~a~~~G~~v~~~~-~~~i~~~~~~~~~~~v~~~~~~~~~~~g~~-------~~i~a~~VIgADG~~ 159 (398)
T TIGR02028 88 GMLRREVLDSFLRRRAADAGATLINGL-VTKLSLPADADDPYTLHYISSDSGGPSGTR-------CTLEVDAVIGADGAN 159 (398)
T ss_pred eeeeHHHHHHHHHHHHHHCCcEEEcce-EEEEEeccCCCceEEEEEeeccccccCCCc-------cEEEeCEEEECCCcc
Confidence 469999999999999999999998885 7776542 12344556543200 0001221 379999999999999
Q ss_pred cccchH
Q psy9486 140 GHLTKS 145 (165)
Q Consensus 140 s~l~~~ 145 (165)
|.++++
T Consensus 160 S~v~~~ 165 (398)
T TIGR02028 160 SRVAKE 165 (398)
T ss_pred hHHHHH
Confidence 988877
No 15
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=98.53 E-value=6.2e-07 Score=72.58 Aligned_cols=76 Identities=28% Similarity=0.356 Sum_probs=60.1
Q ss_pred CCcEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccC
Q psy9486 59 HGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGC 138 (165)
Q Consensus 59 ~~~~~i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~ 138 (165)
..++.++|..|+++|.+.+++.|++++.+++|+++..+ ++.+ .+.+.+ + +.+++|++||+|+|.
T Consensus 83 ~~~~~i~r~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~-~~~~-~~~~~~------~--------~~~~~a~~vv~a~G~ 146 (295)
T TIGR02032 83 ELAYVIDRDAFDEQLAERAQEAGAELRLGTTVLDVEIH-DDRV-VVIVRG------G--------EGTVTAKIVIGADGS 146 (295)
T ss_pred CcEEEEEHHHHHHHHHHHHHHcCCEEEeCcEEeeEEEe-CCEE-EEEEcC------c--------cEEEEeCEEEECCCc
Confidence 44789999999999999999999999999999999886 3433 233322 0 247999999999999
Q ss_pred CcccchHHHhhcCCCC
Q psy9486 139 HGHLTKSLSSRFNLRG 154 (165)
Q Consensus 139 ~s~l~~~l~~~~gl~~ 154 (165)
+|.+.++ +++..
T Consensus 147 ~s~~~~~----~~~~~ 158 (295)
T TIGR02032 147 RSIVAKK----LGLRK 158 (295)
T ss_pred chHHHHh----cCCCC
Confidence 9977665 66643
No 16
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=98.51 E-value=3.6e-07 Score=75.36 Aligned_cols=75 Identities=23% Similarity=0.291 Sum_probs=57.9
Q ss_pred CCcEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccC
Q psy9486 59 HGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGC 138 (165)
Q Consensus 59 ~~~~~i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~ 138 (165)
...+++.|..|+++|.+.|++.|++|..++++.++..+. +.+..+.... .+|+. .+++||+||+|+|.
T Consensus 103 ~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~~~~d~-~~~~~~~~~~----~~g~~-------~~i~adlvVgADG~ 170 (356)
T PF01494_consen 103 PYGHVIDRPELDRALREEAEERGVDIRFGTRVVSIEQDD-DGVTVVVRDG----EDGEE-------ETIEADLVVGADGA 170 (356)
T ss_dssp SCEEEEEHHHHHHHHHHHHHHHTEEEEESEEEEEEEEET-TEEEEEEEET----CTCEE-------EEEEESEEEE-SGT
T ss_pred CcchhhhHHHHHHhhhhhhhhhhhhheeeeecccccccc-cccccccccc----cCCce-------eEEEEeeeecccCc
Confidence 457889999999999999999999999999999998863 4444333322 23321 37999999999999
Q ss_pred CcccchH
Q psy9486 139 HGHLTKS 145 (165)
Q Consensus 139 ~s~l~~~ 145 (165)
+|.+.++
T Consensus 171 ~S~vR~~ 177 (356)
T PF01494_consen 171 HSKVRKQ 177 (356)
T ss_dssp T-HHHHH
T ss_pred ccchhhh
Confidence 9998877
No 17
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=98.49 E-value=1.7e-06 Score=73.34 Aligned_cols=74 Identities=20% Similarity=0.325 Sum_probs=59.6
Q ss_pred CCcEEEEhHHHHHHHHHHHHH-CCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEccc
Q psy9486 59 HGNYVVRLGHVVKWLGEQAEA-MGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEG 137 (165)
Q Consensus 59 ~~~~~i~r~~~d~~L~~~A~~-~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G 137 (165)
..+|.++|..|++.|.+.+.+ .|++++.+++|+++..+ ++.+ .|.+.+ |..+.||+||+|+|
T Consensus 97 ~~~~~i~r~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~-~~~~-~v~~~~---------------g~~~~ad~vV~AdG 159 (382)
T TIGR01984 97 ALGYVVELADLGQALLSRLALLTNIQLYCPARYKEIIRN-QDYV-RVTLDN---------------GQQLRAKLLIAADG 159 (382)
T ss_pred ccEEEEEcHHHHHHHHHHHHhCCCcEEEcCCeEEEEEEc-CCeE-EEEECC---------------CCEEEeeEEEEecC
Confidence 347999999999999999999 49999999999999875 3433 355543 34799999999999
Q ss_pred CCcccchHHHhhcCCC
Q psy9486 138 CHGHLTKSLSSRFNLR 153 (165)
Q Consensus 138 ~~s~l~~~l~~~~gl~ 153 (165)
.+|.+.+. +++.
T Consensus 160 ~~S~vr~~----l~~~ 171 (382)
T TIGR01984 160 ANSKVREL----LSIP 171 (382)
T ss_pred CChHHHHH----cCCC
Confidence 99977666 5654
No 18
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=98.49 E-value=1.3e-06 Score=74.67 Aligned_cols=69 Identities=22% Similarity=0.232 Sum_probs=58.0
Q ss_pred CcEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCC
Q psy9486 60 GNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH 139 (165)
Q Consensus 60 ~~~~i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~ 139 (165)
-+|+++|..+.+.|.+.+++.|++++++++|+++..+ ++.+ .|.+.+ |..+.|+.||+|+|.+
T Consensus 106 ~~~~v~~~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~-~~~v-~v~~~~---------------g~~~~a~~vV~AdG~~ 168 (392)
T PRK08773 106 LGWIVENDLLVDRLWAALHAAGVQLHCPARVVALEQD-ADRV-RLRLDD---------------GRRLEAALAIAADGAA 168 (392)
T ss_pred CEEEEEhHHHHHHHHHHHHhCCCEEEcCCeEEEEEec-CCeE-EEEECC---------------CCEEEeCEEEEecCCC
Confidence 4799999999999999999999999999999999875 3443 355543 3479999999999999
Q ss_pred cccchH
Q psy9486 140 GHLTKS 145 (165)
Q Consensus 140 s~l~~~ 145 (165)
|.+.+.
T Consensus 169 S~vr~~ 174 (392)
T PRK08773 169 STLREL 174 (392)
T ss_pred chHHHh
Confidence 977665
No 19
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.47 E-value=2.3e-06 Score=73.48 Aligned_cols=94 Identities=14% Similarity=0.104 Sum_probs=67.1
Q ss_pred ceEEEEcCCceEEecCCCCCCCCCCCcEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCC
Q psy9486 35 DKFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKD 114 (165)
Q Consensus 35 ~~~~~~~~~~~l~i~~~~~~~~~~~~~~~i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~ 114 (165)
..+.+.+.++...++|.......+.-+|++.|..+.+.|.+.+++.|++|+.++++.++..++ +.+ .|.+.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~-~~v-~v~~~~------ 151 (405)
T PRK05714 80 SEMQVWDGSGTGQIHFSAASVHAEVLGHIVENRVVQDALLERLHDSDIGLLANARLEQMRRSG-DDW-LLTLAD------ 151 (405)
T ss_pred eeEEEEcCCCCceEEecccccCCCccEEEEEhHHHHHHHHHHHhcCCCEEEcCCEEEEEEEcC-CeE-EEEECC------
Confidence 455555555433344432111112347899999999999999999999999999999997753 333 355543
Q ss_pred CCCCCCCCcCeEEEcCEEEEcccCCcccchH
Q psy9486 115 GSPKDTFARGMELHAKVTIFAEGCHGHLTKS 145 (165)
Q Consensus 115 g~~~~~~~~g~~i~Ak~VI~A~G~~s~l~~~ 145 (165)
|.++.|+.||+|+|.+|.+.+.
T Consensus 152 ---------g~~~~a~~vVgAdG~~S~vR~~ 173 (405)
T PRK05714 152 ---------GRQLRAPLVVAADGANSAVRRL 173 (405)
T ss_pred ---------CCEEEeCEEEEecCCCchhHHh
Confidence 3579999999999999988666
No 20
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.46 E-value=3.1e-06 Score=72.30 Aligned_cols=68 Identities=18% Similarity=0.222 Sum_probs=57.2
Q ss_pred CcEEEEhHHHHHHHHHHHHHCC-CEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccC
Q psy9486 60 GNYVVRLGHVVKWLGEQAEAMG-VEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGC 138 (165)
Q Consensus 60 ~~~~i~r~~~d~~L~~~A~~~G-v~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~ 138 (165)
.+|++.|..|++.|.+++.+.+ ++++++++++++..++ +.| .|.+.+ + .++||+||.|+|.
T Consensus 97 ~g~~v~r~~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~-~~v-~v~~~~---------------~-~~~adlvIgADG~ 158 (374)
T PRK06617 97 LGYVVKNSDFKKILLSKITNNPLITLIDNNQYQEVISHN-DYS-IIKFDD---------------K-QIKCNLLIICDGA 158 (374)
T ss_pred cEEEEEHHHHHHHHHHHHhcCCCcEEECCCeEEEEEEcC-CeE-EEEEcC---------------C-EEeeCEEEEeCCC
Confidence 4799999999999999999986 9999999999998753 433 355543 3 7999999999999
Q ss_pred CcccchH
Q psy9486 139 HGHLTKS 145 (165)
Q Consensus 139 ~s~l~~~ 145 (165)
+|.+.+.
T Consensus 159 ~S~vR~~ 165 (374)
T PRK06617 159 NSKVRSH 165 (374)
T ss_pred CchhHHh
Confidence 9999776
No 21
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=98.45 E-value=3e-06 Score=72.86 Aligned_cols=82 Identities=21% Similarity=0.205 Sum_probs=65.5
Q ss_pred eEEecCCCCCCCCCCCcEEEEhHHHHHHHHHHHHHCC-CEEecCCceeEEEEcCCCcEEEEEEc-cccccCCCCCCCCCC
Q psy9486 45 RIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMG-VEIYPGIPASEVLYHGDGSVKGIATG-DVGIAKDGSPKDTFA 122 (165)
Q Consensus 45 ~l~i~~~~~~~~~~~~~~~i~r~~~d~~L~~~A~~~G-v~i~~~~~v~~i~~~~~g~V~GV~~~-~~g~~~~g~~~~~~~ 122 (165)
.+.++.... .....++++.+..+-..|.+++.+.+ |+++.++.|+.+..+ ++.|. |... +
T Consensus 84 ~~~~~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~-~~~v~-v~l~~d-------------- 145 (387)
T COG0654 84 LLIFDAAEL--GRGALGYVVPRSDLLNALLEAARALPNVTLRFGAEVEAVEQD-GDGVT-VTLSFD-------------- 145 (387)
T ss_pred eEEeccccc--CCCcceEEeEhHHHHHHHHHHHhhCCCcEEEcCceEEEEEEc-CCceE-EEEcCC--------------
Confidence 455554322 12455899999999999999999987 999999999999986 45666 6665 3
Q ss_pred cCeEEEcCEEEEcccCCcccchH
Q psy9486 123 RGMELHAKVTIFAEGCHGHLTKS 145 (165)
Q Consensus 123 ~g~~i~Ak~VI~A~G~~s~l~~~ 145 (165)
|.+++|++||.|+|.+|.+.+.
T Consensus 146 -G~~~~a~llVgADG~~S~vR~~ 167 (387)
T COG0654 146 -GETLDADLLVGADGANSAVRRA 167 (387)
T ss_pred -CcEEecCEEEECCCCchHHHHh
Confidence 4589999999999999988777
No 22
>PRK06185 hypothetical protein; Provisional
Probab=98.45 E-value=4.9e-06 Score=71.35 Aligned_cols=78 Identities=21% Similarity=0.287 Sum_probs=62.8
Q ss_pred CcEEEEhHHHHHHHHHHHHHC-CCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccC
Q psy9486 60 GNYVVRLGHVVKWLGEQAEAM-GVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGC 138 (165)
Q Consensus 60 ~~~~i~r~~~d~~L~~~A~~~-Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~ 138 (165)
.++.+.+..+.++|.+++++. |++++.+++|.++..+ ++.+++|.+.. .+|+ .+++|+.||+|+|.
T Consensus 101 ~~~~v~~~~l~~~L~~~~~~~~~v~i~~~~~v~~~~~~-~~~v~~v~~~~----~~g~--------~~i~a~~vI~AdG~ 167 (407)
T PRK06185 101 YIAMMPQWDFLDFLAEEASAYPNFTLRMGAEVTGLIEE-GGRVTGVRART----PDGP--------GEIRADLVVGADGR 167 (407)
T ss_pred cEEEeehHHHHHHHHHHHhhCCCcEEEeCCEEEEEEEe-CCEEEEEEEEc----CCCc--------EEEEeCEEEECCCC
Confidence 467899999999999999874 9999999999999886 67787877653 1221 37999999999999
Q ss_pred CcccchHHHhhcCCCC
Q psy9486 139 HGHLTKSLSSRFNLRG 154 (165)
Q Consensus 139 ~s~l~~~l~~~~gl~~ 154 (165)
+|.+.+. +|+..
T Consensus 168 ~S~vr~~----~gi~~ 179 (407)
T PRK06185 168 HSRVRAL----AGLEV 179 (407)
T ss_pred chHHHHH----cCCCc
Confidence 9987665 66654
No 23
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=98.43 E-value=2.3e-06 Score=75.59 Aligned_cols=75 Identities=20% Similarity=0.229 Sum_probs=52.9
Q ss_pred EEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCC-CcEEEEEEccccc-cCCCCCCCCCCcCeEEEcCEEEEcccCCc
Q psy9486 63 VVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGD-GSVKGIATGDVGI-AKDGSPKDTFARGMELHAKVTIFAEGCHG 140 (165)
Q Consensus 63 ~i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~-g~V~GV~~~~~g~-~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s 140 (165)
+++|..||++|.++|+++|++++.+ .+.++..+.+ +..+.|.+.+... +.+|+ +.+++|++||+|+|++|
T Consensus 128 ~v~R~~~d~~L~~~A~~~Ga~~~~~-~v~~i~~~~~~~~~~~v~~~~~~~~~~~g~-------~~~v~a~~VIgADG~~S 199 (450)
T PLN00093 128 MVRREVLDSFLRERAQSNGATLING-LFTRIDVPKDPNGPYVIHYTSYDSGSGAGT-------PKTLEVDAVIGADGANS 199 (450)
T ss_pred EecHHHHHHHHHHHHHHCCCEEEec-eEEEEEeccCCCCcEEEEEEeccccccCCC-------ccEEEeCEEEEcCCcch
Confidence 5999999999999999999999876 5777765321 2223444432100 00122 24799999999999999
Q ss_pred ccchH
Q psy9486 141 HLTKS 145 (165)
Q Consensus 141 ~l~~~ 145 (165)
.+++.
T Consensus 200 ~vrr~ 204 (450)
T PLN00093 200 RVAKD 204 (450)
T ss_pred HHHHH
Confidence 88887
No 24
>PLN02985 squalene monooxygenase
Probab=98.41 E-value=2.5e-06 Score=76.58 Aligned_cols=99 Identities=20% Similarity=0.320 Sum_probs=68.8
Q ss_pred ceEEEEcCCceEEecCCCCC--CCCCCCcEEEEhHHHHHHHHHHHHHC-CCEEecCCceeEEEEcCCCcEEEEEEccccc
Q psy9486 35 DKFAYLTKSKRIGIPILPGM--PMNNHGNYVVRLGHVVKWLGEQAEAM-GVEIYPGIPASEVLYHGDGSVKGIATGDVGI 111 (165)
Q Consensus 35 ~~~~~~~~~~~l~i~~~~~~--~~~~~~~~~i~r~~~d~~L~~~A~~~-Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~ 111 (165)
.++.+....+.+.++|.... ......++++.|..|.+.|.++|.+. ||+++.+ ++.+++.+ ++.++||+...
T Consensus 113 ~~~~v~~~g~~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~a~~~~~V~i~~g-tvv~li~~-~~~v~gV~~~~--- 187 (514)
T PLN02985 113 TGMAVYKDGKEAVAPFPVDNNNFPYEPSARSFHNGRFVQRLRQKASSLPNVRLEEG-TVKSLIEE-KGVIKGVTYKN--- 187 (514)
T ss_pred ccEEEEECCEEEEEeCCCCCcCCCcccceeeeecHHHHHHHHHHHHhCCCeEEEee-eEEEEEEc-CCEEEEEEEEc---
Confidence 34444443344455654211 11123468999999999999999886 7999865 68888765 67788888753
Q ss_pred cCCCCCCCCCCcCeEEEcCEEEEcccCCcccchHH
Q psy9486 112 AKDGSPKDTFARGMELHAKVTIFAEGCHGHLTKSL 146 (165)
Q Consensus 112 ~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l~~~l 146 (165)
.+|+. .+++|++||+|+|.+|.+.+++
T Consensus 188 -~dG~~-------~~~~AdLVVgADG~~S~vR~~l 214 (514)
T PLN02985 188 -SAGEE-------TTALAPLTVVCDGCYSNLRRSL 214 (514)
T ss_pred -CCCCE-------EEEECCEEEECCCCchHHHHHh
Confidence 34432 3578999999999999987774
No 25
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=98.39 E-value=4.5e-06 Score=72.93 Aligned_cols=101 Identities=15% Similarity=0.101 Sum_probs=69.4
Q ss_pred eeceEEEEcCCceEEecCCCCCCCCCCCcEEEEhHHHHHHHHHHHHHCC---CEEecCCceeEEEEc-----CCCcEEEE
Q psy9486 33 QEDKFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMG---VEIYPGIPASEVLYH-----GDGSVKGI 104 (165)
Q Consensus 33 ~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~i~r~~~d~~L~~~A~~~G---v~i~~~~~v~~i~~~-----~~g~V~GV 104 (165)
....+.+........++|.... ....-+|+++|..+.+.|.+++++.+ ++++.+++|.++..+ +++..+.|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~~v~v 162 (437)
T TIGR01989 84 PFGRMQVWDGCSLALIRFDRDN-GKEDMACIIENDNIQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNWVHI 162 (437)
T ss_pred ceeeEEEecCCCCceEEeecCC-CCCceEEEEEHHHHHHHHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCCCceEE
Confidence 3345555554432234332211 11234799999999999999999875 999999999999762 12322345
Q ss_pred EEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcccchHHHhhcCCC
Q psy9486 105 ATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLTKSLSSRFNLR 153 (165)
Q Consensus 105 ~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l~~~l~~~~gl~ 153 (165)
.+.+ |.+++|++||.|+|++|.+.+. +|+.
T Consensus 163 ~~~~---------------g~~i~a~llVgADG~~S~vR~~----~gi~ 192 (437)
T TIGR01989 163 TLSD---------------GQVLYTKLLIGADGSNSNVRKA----ANID 192 (437)
T ss_pred EEcC---------------CCEEEeeEEEEecCCCChhHHH----cCCC
Confidence 5543 4689999999999999999777 5554
No 26
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.33 E-value=3.6e-06 Score=71.88 Aligned_cols=73 Identities=21% Similarity=0.333 Sum_probs=59.6
Q ss_pred CcEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCC
Q psy9486 60 GNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH 139 (165)
Q Consensus 60 ~~~~i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~ 139 (165)
.+|.++|..|++.|.+++.+.|++++.+++|+++..+ ++.+ .|.+.+ |..+.||+||.|+|.+
T Consensus 104 ~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~-~~~v-~v~~~~---------------g~~~~ad~vI~AdG~~ 166 (403)
T PRK07333 104 FAHMVENRVLINALRKRAEALGIDLREATSVTDFETR-DEGV-TVTLSD---------------GSVLEARLLVAADGAR 166 (403)
T ss_pred cEEEeEhHHHHHHHHHHHHhCCCEEEcCCEEEEEEEc-CCEE-EEEECC---------------CCEEEeCEEEEcCCCC
Confidence 3678999999999999999999999999999999875 3433 355543 3579999999999999
Q ss_pred cccchHHHhhcCCC
Q psy9486 140 GHLTKSLSSRFNLR 153 (165)
Q Consensus 140 s~l~~~l~~~~gl~ 153 (165)
|.+.+. +|+.
T Consensus 167 S~vr~~----~g~~ 176 (403)
T PRK07333 167 SKLREL----AGIK 176 (403)
T ss_pred hHHHHH----cCCC
Confidence 987665 5654
No 27
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=98.32 E-value=4.2e-06 Score=71.37 Aligned_cols=70 Identities=21% Similarity=0.211 Sum_probs=57.7
Q ss_pred CCcEEEEhHHHHHHHHHHHHHC-CCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEccc
Q psy9486 59 HGNYVVRLGHVVKWLGEQAEAM-GVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEG 137 (165)
Q Consensus 59 ~~~~~i~r~~~d~~L~~~A~~~-Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G 137 (165)
..+|++.|..|++.|.+++++. |++++.+++|+++..+ ++. +.|.+.+ |.+++|++||+|+|
T Consensus 104 ~~g~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~-~~~-~~v~~~~---------------g~~~~a~~vI~AdG 166 (391)
T PRK08020 104 ELGYMVENRVLQLALWQALEAHPNVTLRCPASLQALQRD-DDG-WELTLAD---------------GEEIQAKLVIGADG 166 (391)
T ss_pred ccEEEEEcHHHHHHHHHHHHcCCCcEEEcCCeeEEEEEc-CCe-EEEEECC---------------CCEEEeCEEEEeCC
Confidence 4479999999999999999887 9999999999999765 333 3455543 35799999999999
Q ss_pred CCcccchH
Q psy9486 138 CHGHLTKS 145 (165)
Q Consensus 138 ~~s~l~~~ 145 (165)
.+|.+.+.
T Consensus 167 ~~S~vR~~ 174 (391)
T PRK08020 167 ANSQVRQM 174 (391)
T ss_pred CCchhHHH
Confidence 99988666
No 28
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=98.30 E-value=5.5e-06 Score=70.42 Aligned_cols=74 Identities=14% Similarity=0.189 Sum_probs=59.3
Q ss_pred CCcEEEEhHHHHHHHHHHHHHCC-CEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEccc
Q psy9486 59 HGNYVVRLGHVVKWLGEQAEAMG-VEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEG 137 (165)
Q Consensus 59 ~~~~~i~r~~~d~~L~~~A~~~G-v~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G 137 (165)
...|.+.|..|++.|.++|++.| ++++ +++|+++..+ ++.+ .|.+.+ |.+++|+.||+|+|
T Consensus 103 ~~~~~i~~~~l~~~L~~~~~~~~~v~~~-~~~v~~i~~~-~~~~-~v~~~~---------------g~~~~a~~vI~adG 164 (388)
T PRK07608 103 QLAWIVESSLIERALWAALRFQPNLTWF-PARAQGLEVD-PDAA-TLTLAD---------------GQVLRADLVVGADG 164 (388)
T ss_pred CCEEEEEhHHHHHHHHHHHHhCCCcEEE-cceeEEEEec-CCeE-EEEECC---------------CCEEEeeEEEEeCC
Confidence 44789999999999999999998 9999 9999999765 3433 466654 34799999999999
Q ss_pred CCcccchHHHhhcCCCC
Q psy9486 138 CHGHLTKSLSSRFNLRG 154 (165)
Q Consensus 138 ~~s~l~~~l~~~~gl~~ 154 (165)
.+|.+.+. +++..
T Consensus 165 ~~S~vr~~----~~~~~ 177 (388)
T PRK07608 165 AHSWVRSQ----AGIKA 177 (388)
T ss_pred CCchHHHh----cCCCc
Confidence 99987665 56543
No 29
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.30 E-value=8.2e-06 Score=69.39 Aligned_cols=69 Identities=28% Similarity=0.340 Sum_probs=56.4
Q ss_pred CcEEEEhHHHHHHHHHHHHH-CCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccC
Q psy9486 60 GNYVVRLGHVVKWLGEQAEA-MGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGC 138 (165)
Q Consensus 60 ~~~~i~r~~~d~~L~~~A~~-~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~ 138 (165)
.+|.+.|..+++.|.+.+.+ .|++++.+++|+++..+ ++.+ .|.+.+ |..+.|+.||+|+|.
T Consensus 105 ~~~~~~~~~l~~~l~~~~~~~~g~~~~~~~~v~~i~~~-~~~~-~v~~~~---------------g~~~~a~~vI~AdG~ 167 (395)
T PRK05732 105 LGYVVELHDVGQRLFALLDKAPGVTLHCPARVANVERT-QGSV-RVTLDD---------------GETLTGRLLVAADGS 167 (395)
T ss_pred cEEEEEhHHHHHHHHHHHhcCCCcEEEcCCEEEEEEEc-CCeE-EEEECC---------------CCEEEeCEEEEecCC
Confidence 36899999999999999877 58999999999999765 3433 366654 347999999999999
Q ss_pred CcccchH
Q psy9486 139 HGHLTKS 145 (165)
Q Consensus 139 ~s~l~~~ 145 (165)
+|.+.+.
T Consensus 168 ~S~vr~~ 174 (395)
T PRK05732 168 HSALREA 174 (395)
T ss_pred ChhhHHh
Confidence 9987665
No 30
>PRK09126 hypothetical protein; Provisional
Probab=98.29 E-value=1.3e-05 Score=68.31 Aligned_cols=69 Identities=17% Similarity=0.236 Sum_probs=56.9
Q ss_pred CcEEEEhHHHHHHHHHHHHH-CCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccC
Q psy9486 60 GNYVVRLGHVVKWLGEQAEA-MGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGC 138 (165)
Q Consensus 60 ~~~~i~r~~~d~~L~~~A~~-~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~ 138 (165)
-+|.+.|..+.+.|.+++.+ .|++|+.+++|+++..+ ++. +.|.+.+ |.++.|++||+|+|.
T Consensus 103 ~g~~~~~~~l~~~l~~~~~~~~g~~i~~~~~v~~~~~~-~~~-~~v~~~~---------------g~~~~a~~vI~AdG~ 165 (392)
T PRK09126 103 LGYLVPNHLIRRAAYEAVSQQDGIELLTGTRVTAVRTD-DDG-AQVTLAN---------------GRRLTARLLVAADSR 165 (392)
T ss_pred ceEEEeHHHHHHHHHHHHhhCCCcEEEcCCeEEEEEEc-CCe-EEEEEcC---------------CCEEEeCEEEEeCCC
Confidence 47899999999999999865 79999999999999775 343 3465543 358999999999999
Q ss_pred CcccchH
Q psy9486 139 HGHLTKS 145 (165)
Q Consensus 139 ~s~l~~~ 145 (165)
+|.+.+.
T Consensus 166 ~S~vr~~ 172 (392)
T PRK09126 166 FSATRRQ 172 (392)
T ss_pred CchhhHh
Confidence 9988776
No 31
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=98.26 E-value=1.3e-05 Score=68.98 Aligned_cols=70 Identities=17% Similarity=0.157 Sum_probs=57.8
Q ss_pred CCcEEEEhHHHHHHHHHHHHHC-CCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEccc
Q psy9486 59 HGNYVVRLGHVVKWLGEQAEAM-GVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEG 137 (165)
Q Consensus 59 ~~~~~i~r~~~d~~L~~~A~~~-Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G 137 (165)
.-+|++.+..+.+.|.+++.+. |++++.+++|+++..++ +. +.|.+.+ |..++|++||+|+|
T Consensus 103 ~~g~~~~~~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~-~~-~~v~~~~---------------g~~~~a~lvIgADG 165 (405)
T PRK08850 103 DLGHIVENRVIQLALLEQVQKQDNVTLLMPARCQSIAVGE-SE-AWLTLDN---------------GQALTAKLVVGADG 165 (405)
T ss_pred ccEEEEEHHHHHHHHHHHHhcCCCeEEEcCCeeEEEEeeC-Ce-EEEEECC---------------CCEEEeCEEEEeCC
Confidence 3479999999999999999885 79999999999998753 33 3455543 35799999999999
Q ss_pred CCcccchH
Q psy9486 138 CHGHLTKS 145 (165)
Q Consensus 138 ~~s~l~~~ 145 (165)
.+|.+.++
T Consensus 166 ~~S~vR~~ 173 (405)
T PRK08850 166 ANSWLRRQ 173 (405)
T ss_pred CCChhHHH
Confidence 99988777
No 32
>PRK07045 putative monooxygenase; Reviewed
Probab=98.24 E-value=5.5e-06 Score=70.78 Aligned_cols=70 Identities=14% Similarity=0.250 Sum_probs=58.9
Q ss_pred EEEEhHHHHHHHHHHHHH-CCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCc
Q psy9486 62 YVVRLGHVVKWLGEQAEA-MGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG 140 (165)
Q Consensus 62 ~~i~r~~~d~~L~~~A~~-~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s 140 (165)
+.+.|..+.++|.+++.+ .|++++++++|+++..++++.++.|.+.+ |.++.|++||.|+|.+|
T Consensus 101 ~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~---------------g~~~~~~~vIgADG~~S 165 (388)
T PRK07045 101 ILIPCEQLRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSD---------------GERVAPTVLVGADGARS 165 (388)
T ss_pred EEccHHHHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeCC---------------CCEEECCEEEECCCCCh
Confidence 357899999999999865 78999999999999886566666777754 45899999999999999
Q ss_pred ccchHH
Q psy9486 141 HLTKSL 146 (165)
Q Consensus 141 ~l~~~l 146 (165)
.+.+++
T Consensus 166 ~vR~~~ 171 (388)
T PRK07045 166 MIRDDV 171 (388)
T ss_pred HHHHHh
Confidence 997754
No 33
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=98.22 E-value=5.4e-06 Score=68.64 Aligned_cols=63 Identities=24% Similarity=0.324 Sum_probs=55.6
Q ss_pred cEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCc
Q psy9486 61 NYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG 140 (165)
Q Consensus 61 ~~~i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s 140 (165)
+..++-..+...|++.|++.|++++.+++|+++..+ ++++++|.+.+ | .++|+.||+|+|+|+
T Consensus 131 ~g~v~p~~l~~~l~~~~~~~g~~~~~~~~v~~i~~~-~~~~~~v~~~~---------------g-~~~a~~vV~a~G~~~ 193 (337)
T TIGR02352 131 DAHVDPRALLKALEKALEKLGVEIIEHTEVQHIEIR-GEKVTAIVTPS---------------G-DVQADQVVLAAGAWA 193 (337)
T ss_pred CceEChHHHHHHHHHHHHHcCCEEEccceEEEEEee-CCEEEEEEcCC---------------C-EEECCEEEEcCChhh
Confidence 346678899999999999999999999999999885 67788898865 3 799999999999997
No 34
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=98.20 E-value=7.3e-06 Score=71.35 Aligned_cols=74 Identities=19% Similarity=0.304 Sum_probs=59.7
Q ss_pred hHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcccchH
Q psy9486 66 LGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLTKS 145 (165)
Q Consensus 66 r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l~~~ 145 (165)
-..+.+.|.+++++.||+|+++++|++|+.+++++|+||++.. .+|+. ..+.||.||+|+|.++.. ++
T Consensus 129 g~~l~~~l~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~----~~g~~-------~~~~a~~VVlAtGg~~~n-~~ 196 (439)
T TIGR01813 129 GAEIVQKLYKKAKKEGIDTRLNSKVEDLIQDDQGTVVGVVVKG----KGKGI-------YIKAAKAVVLATGGFGSN-KE 196 (439)
T ss_pred HHHHHHHHHHHHHHcCCEEEeCCEeeEeEECCCCcEEEEEEEe----CCCeE-------EEEecceEEEecCCCCCC-HH
Confidence 3568889999999999999999999999996568999998764 22321 257899999999999975 66
Q ss_pred HHhhcC
Q psy9486 146 LSSRFN 151 (165)
Q Consensus 146 l~~~~g 151 (165)
|.++|.
T Consensus 197 m~~~~~ 202 (439)
T TIGR01813 197 MIAKYD 202 (439)
T ss_pred HHHHhC
Confidence 777663
No 35
>PRK07538 hypothetical protein; Provisional
Probab=98.20 E-value=2.3e-05 Score=67.71 Aligned_cols=74 Identities=19% Similarity=0.254 Sum_probs=56.7
Q ss_pred cEEEEhHHHHHHHHHHHHH-CCC-EEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccC
Q psy9486 61 NYVVRLGHVVKWLGEQAEA-MGV-EIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGC 138 (165)
Q Consensus 61 ~~~i~r~~~d~~L~~~A~~-~Gv-~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~ 138 (165)
.|.+.|..|++.|.++|.+ .|. .|+.+++|+++..++++.++.+.... +|+ +.+++||+||.|+|.
T Consensus 96 ~~~i~R~~l~~~L~~~~~~~~g~~~i~~~~~v~~~~~~~~~~~~~~~~~~-----~g~-------~~~~~adlvIgADG~ 163 (413)
T PRK07538 96 QYSIHRGELQMLLLDAVRERLGPDAVRTGHRVVGFEQDADVTVVFLGDRA-----GGD-------LVSVRGDVLIGADGI 163 (413)
T ss_pred eEEEEHHHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEeccC-----CCc-------cceEEeeEEEECCCC
Confidence 5789999999999999976 585 69999999999876555444433221 222 247999999999999
Q ss_pred CcccchHH
Q psy9486 139 HGHLTKSL 146 (165)
Q Consensus 139 ~s~l~~~l 146 (165)
+|.+.+.+
T Consensus 164 ~S~vR~~l 171 (413)
T PRK07538 164 HSAVRAQL 171 (413)
T ss_pred CHHHhhhh
Confidence 99987764
No 36
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=98.19 E-value=1.1e-05 Score=71.93 Aligned_cols=82 Identities=21% Similarity=0.229 Sum_probs=65.2
Q ss_pred EEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486 63 VVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL 142 (165)
Q Consensus 63 ~i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l 142 (165)
.++-..+...|++.|++.|++|++.++|+++..+ +++++||++.+. .+|+ ..+|+|+.||.|+|+|+
T Consensus 124 ~vdp~~l~~al~~~A~~~Ga~i~~~t~V~~i~~~-~~~v~gv~v~~~---~~g~-------~~~i~a~~VVnAaG~wa-- 190 (516)
T TIGR03377 124 TVDPFRLVAANVLDAQEHGARIFTYTKVTGLIRE-GGRVTGVKVEDH---KTGE-------EERIEAQVVINAAGIWA-- 190 (516)
T ss_pred EECHHHHHHHHHHHHHHcCCEEEcCcEEEEEEEE-CCEEEEEEEEEc---CCCc-------EEEEEcCEEEECCCcch--
Confidence 6788899999999999999999999999999885 688889887531 1221 14799999999999997
Q ss_pred chHHHhhcCCCCCCCC
Q psy9486 143 TKSLSSRFNLRGQCMS 158 (165)
Q Consensus 143 ~~~l~~~~gl~~~~~~ 158 (165)
.++.+..|+..++.|
T Consensus 191 -~~l~~~~g~~~~i~p 205 (516)
T TIGR03377 191 -GRIAEYAGLDIRMFP 205 (516)
T ss_pred -HHHHHhcCCCCceec
Confidence 677777776544444
No 37
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.19 E-value=2e-05 Score=67.60 Aligned_cols=72 Identities=15% Similarity=0.203 Sum_probs=54.6
Q ss_pred CcEEEEhHHHHHHHHHHHHHC-CCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccC
Q psy9486 60 GNYVVRLGHVVKWLGEQAEAM-GVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGC 138 (165)
Q Consensus 60 ~~~~i~r~~~d~~L~~~A~~~-Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~ 138 (165)
.+|++.+..+.+.|.+++.+. ||+++++++|+++..++ +.+ .|.+.+ ++. ..+++||+||+|+|.
T Consensus 114 ~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~~v~~v~~~~-~~~-~v~~~~-----~~~-------~~~i~adlvIgADG~ 179 (415)
T PRK07364 114 LGYVGEHQVLLEALQEFLQSCPNITWLCPAEVVSVEYQQ-DAA-TVTLEI-----EGK-------QQTLQSKLVVAADGA 179 (415)
T ss_pred cEEEEecHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecC-Cee-EEEEcc-----CCc-------ceEEeeeEEEEeCCC
Confidence 357777678999999998885 79999999999997753 433 344432 111 136999999999999
Q ss_pred CcccchH
Q psy9486 139 HGHLTKS 145 (165)
Q Consensus 139 ~s~l~~~ 145 (165)
+|.+.+.
T Consensus 180 ~S~vR~~ 186 (415)
T PRK07364 180 RSPIRQA 186 (415)
T ss_pred CchhHHH
Confidence 9988776
No 38
>PRK07121 hypothetical protein; Validated
Probab=98.18 E-value=9.6e-06 Score=71.93 Aligned_cols=73 Identities=23% Similarity=0.380 Sum_probs=59.1
Q ss_pred hHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEc-CEEEEcccCCcccch
Q psy9486 66 LGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHA-KVTIFAEGCHGHLTK 144 (165)
Q Consensus 66 r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~A-k~VI~A~G~~s~l~~ 144 (165)
-..+.+.|.+++++.|++|+++++|++|+.+++|+|+||++.. +|+. ..|+| |.||+|+|..+.. +
T Consensus 176 g~~~~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~-----~~~~-------~~i~a~k~VVlAtGg~~~N-~ 242 (492)
T PRK07121 176 GAMLMDPLAKRAAALGVQIRYDTRATRLIVDDDGRVVGVEARR-----YGET-------VAIRARKGVVLAAGGFAMN-R 242 (492)
T ss_pred hHHHHHHHHHHHHhCCCEEEeCCEEEEEEECCCCCEEEEEEEe-----CCcE-------EEEEeCCEEEECCCCcCcC-H
Confidence 3468889999999999999999999999986567999998853 2322 36899 9999999999875 5
Q ss_pred HHHhhcC
Q psy9486 145 SLSSRFN 151 (165)
Q Consensus 145 ~l~~~~g 151 (165)
+|.++|.
T Consensus 243 em~~~~~ 249 (492)
T PRK07121 243 EMVARYA 249 (492)
T ss_pred HHHHHhC
Confidence 6666664
No 39
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=98.17 E-value=1.4e-05 Score=68.58 Aligned_cols=76 Identities=20% Similarity=0.260 Sum_probs=60.0
Q ss_pred EEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486 63 VVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL 142 (165)
Q Consensus 63 ~i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l 142 (165)
.++-..+.+.|++.+++.|++|+++++|+++..+ ++++++|++.+ .+++|+.||+|+|.|+
T Consensus 197 ~~~p~~~~~~l~~~~~~~G~~i~~~~~V~~i~~~-~~~~~~v~t~~----------------~~~~a~~VV~a~G~~~-- 257 (416)
T PRK00711 197 TGDCQLFTQRLAAMAEQLGVKFRFNTPVDGLLVE-GGRITGVQTGG----------------GVITADAYVVALGSYS-- 257 (416)
T ss_pred cCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEec-CCEEEEEEeCC----------------cEEeCCEEEECCCcch--
Confidence 3455688899999999999999999999999875 56777887764 3799999999999997
Q ss_pred chHHHhhcCCCCCCCC
Q psy9486 143 TKSLSSRFNLRGQCMS 158 (165)
Q Consensus 143 ~~~l~~~~gl~~~~~~ 158 (165)
.++.+.+|+..+..|
T Consensus 258 -~~l~~~~g~~~pi~p 272 (416)
T PRK00711 258 -TALLKPLGVDIPVYP 272 (416)
T ss_pred -HHHHHHhCCCcccCC
Confidence 566666665543433
No 40
>PRK12839 hypothetical protein; Provisional
Probab=98.16 E-value=2.2e-05 Score=71.40 Aligned_cols=77 Identities=17% Similarity=0.257 Sum_probs=59.0
Q ss_pred cEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEE-EcCEEEEcccCC
Q psy9486 61 NYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMEL-HAKVTIFAEGCH 139 (165)
Q Consensus 61 ~~~i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i-~Ak~VI~A~G~~ 139 (165)
...+.-..+...|.++|++.||+|++++.|++|+.+++|+|+||...+ .+|+ ..+ .++.||+|+|.+
T Consensus 208 ~~~~~g~~l~~~L~~~a~~~Gv~i~~~t~v~~Li~~~~g~V~GV~~~~----~~g~--------~~i~aak~VVLAtGGf 275 (572)
T PRK12839 208 MQLVNGTALTGRLLRSADDLGVDLRVSTSATSLTTDKNGRVTGVRVQG----PDGA--------VTVEATRGVVLATGGF 275 (572)
T ss_pred cccccHHHHHHHHHHHHHHCCCEEEcCCEEEEEEECCCCcEEEEEEEe----CCCc--------EEEEeCCEEEEcCCCc
Confidence 344556778889999999999999999999999986578999998754 3342 234 458999999999
Q ss_pred cccchHHHhhc
Q psy9486 140 GHLTKSLSSRF 150 (165)
Q Consensus 140 s~l~~~l~~~~ 150 (165)
+... .+.+++
T Consensus 276 ~~n~-~~~~~~ 285 (572)
T PRK12839 276 PNDV-DRRKEL 285 (572)
T ss_pred ccCH-HHHHHh
Confidence 8763 334443
No 41
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=98.16 E-value=6.1e-06 Score=71.04 Aligned_cols=68 Identities=26% Similarity=0.408 Sum_probs=53.3
Q ss_pred EEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcc
Q psy9486 63 VVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH 141 (165)
Q Consensus 63 ~i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~ 141 (165)
......+...|.+.++++|++|++++.|++|+.+ +++|+||...+. .+|+. ..|+|+.||+|+|..+.
T Consensus 137 ~~~g~~~~~~l~~~~~~~gv~i~~~~~~~~Li~e-~g~V~Gv~~~~~---~~g~~-------~~i~A~aVIlAtGG~~~ 204 (417)
T PF00890_consen 137 LGGGKALIEALAKAAEEAGVDIRFNTRVTDLITE-DGRVTGVVAENP---ADGEF-------VRIKAKAVILATGGFGG 204 (417)
T ss_dssp CCHHHHHHHHHHHHHHHTTEEEEESEEEEEEEEE-TTEEEEEEEEET---TTCEE-------EEEEESEEEE----BGG
T ss_pred cccHHHHHHHHHHHHhhcCeeeeccceeeeEEEe-CCceeEEEEEEC---CCCeE-------EEEeeeEEEeccCcccc
Confidence 3456678899999999999999999999999996 789999988831 24443 37999999999999985
No 42
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=98.15 E-value=1.9e-05 Score=67.79 Aligned_cols=97 Identities=18% Similarity=0.098 Sum_probs=65.5
Q ss_pred ceEEEEcCCceEEecCCCCCCCCCCCcEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCC
Q psy9486 35 DKFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKD 114 (165)
Q Consensus 35 ~~~~~~~~~~~l~i~~~~~~~~~~~~~~~i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~ 114 (165)
..+.+........++|... ......+++.+..+.+.|++++++.|++++++++++++... ++..+.|.... +
T Consensus 73 ~~~~~~~~g~~~~~~~~~~--~~~~~~~~~~~~~l~~~Ll~~a~~~gv~v~~~~~v~~i~~~-~~~~~~V~~~~-----~ 144 (392)
T PRK08243 73 DGIELRFDGRRHRIDLTEL--TGGRAVTVYGQTEVTRDLMAARLAAGGPIRFEASDVALHDF-DSDRPYVTYEK-----D 144 (392)
T ss_pred CcEEEEECCEEEEeccccc--cCCceEEEeCcHHHHHHHHHHHHhCCCeEEEeeeEEEEEec-CCCceEEEEEc-----C
Confidence 3444444444455665422 11223456678899999999999999999999999998652 23334455532 3
Q ss_pred CCCCCCCCcCeEEEcCEEEEcccCCcccchHH
Q psy9486 115 GSPKDTFARGMELHAKVTIFAEGCHGHLTKSL 146 (165)
Q Consensus 115 g~~~~~~~~g~~i~Ak~VI~A~G~~s~l~~~l 146 (165)
|+. .+++||+||.|+|.+|.+.+++
T Consensus 145 G~~-------~~i~ad~vVgADG~~S~vR~~~ 169 (392)
T PRK08243 145 GEE-------HRLDCDFIAGCDGFHGVSRASI 169 (392)
T ss_pred CeE-------EEEEeCEEEECCCCCCchhhhc
Confidence 322 3799999999999999997774
No 43
>PRK06126 hypothetical protein; Provisional
Probab=98.14 E-value=1.3e-05 Score=71.86 Aligned_cols=74 Identities=18% Similarity=0.186 Sum_probs=57.0
Q ss_pred CcEEEEhHHHHHHHHHHHHH-CCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccC
Q psy9486 60 GNYVVRLGHVVKWLGEQAEA-MGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGC 138 (165)
Q Consensus 60 ~~~~i~r~~~d~~L~~~A~~-~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~ 138 (165)
..+.+++..+.+.|.+.|++ .|++|+++++|+++..+ ++.|+ +.+.+. .+|+. .+++||+||+|+|+
T Consensus 119 ~~~~i~q~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~-~~~v~-v~~~~~---~~g~~-------~~i~ad~vVgADG~ 186 (545)
T PRK06126 119 LPHRIPQKYLEPILLEHAAAQPGVTLRYGHRLTDFEQD-ADGVT-ATVEDL---DGGES-------LTIRADYLVGCDGA 186 (545)
T ss_pred ccccCCHHHHHHHHHHHHHhCCCceEEeccEEEEEEEC-CCeEE-EEEEEC---CCCcE-------EEEEEEEEEecCCc
Confidence 35789999999999999987 48999999999999886 44444 333220 12322 37999999999999
Q ss_pred CcccchH
Q psy9486 139 HGHLTKS 145 (165)
Q Consensus 139 ~s~l~~~ 145 (165)
+|.+.++
T Consensus 187 ~S~VR~~ 193 (545)
T PRK06126 187 RSAVRRS 193 (545)
T ss_pred chHHHHh
Confidence 9988766
No 44
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.13 E-value=1.9e-05 Score=71.74 Aligned_cols=71 Identities=17% Similarity=0.244 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEc-CEEEEcccCCcccchH
Q psy9486 67 GHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHA-KVTIFAEGCHGHLTKS 145 (165)
Q Consensus 67 ~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~A-k~VI~A~G~~s~l~~~ 145 (165)
..+...|.+.+++.||+|+++++|++|+.+ +|+|+||.+.. +|.. ..|.| |.||+|+|..+.. .+
T Consensus 217 ~~l~~~L~~~~~~~Gv~i~~~t~v~~Li~~-~g~V~GV~~~~-----~g~~-------~~i~a~kaVILAtGGf~~n-~e 282 (564)
T PRK12845 217 QALAAGLFAGVLRAGIPIWTETSLVRLTDD-GGRVTGAVVDH-----RGRE-------VTVTARRGVVLAAGGFDHD-ME 282 (564)
T ss_pred HHHHHHHHHHHHHCCCEEEecCEeeEEEec-CCEEEEEEEEE-----CCcE-------EEEEcCCEEEEecCCcccc-HH
Confidence 346678899999999999999999999975 79999997754 2322 25777 6899999999988 67
Q ss_pred HHhhcC
Q psy9486 146 LSSRFN 151 (165)
Q Consensus 146 l~~~~g 151 (165)
|.++|.
T Consensus 283 m~~~y~ 288 (564)
T PRK12845 283 MRWKFQ 288 (564)
T ss_pred HHHHhC
Confidence 777775
No 45
>PRK08244 hypothetical protein; Provisional
Probab=98.13 E-value=1.6e-05 Score=70.34 Aligned_cols=71 Identities=24% Similarity=0.326 Sum_probs=56.4
Q ss_pred cEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCc
Q psy9486 61 NYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG 140 (165)
Q Consensus 61 ~~~i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s 140 (165)
.+.+.+..+.+.|.+.+++.|++++.+++++++..+ ++.|. |.+.+ .+|. .+++|++||+|+|.+|
T Consensus 94 ~~~i~q~~le~~L~~~~~~~gv~v~~~~~v~~i~~~-~~~v~-v~~~~----~~g~--------~~i~a~~vVgADG~~S 159 (493)
T PRK08244 94 TLFLPQAETEKVLEEHARSLGVEIFRGAEVLAVRQD-GDGVE-VVVRG----PDGL--------RTLTSSYVVGADGAGS 159 (493)
T ss_pred EEEecHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEc-CCeEE-EEEEe----CCcc--------EEEEeCEEEECCCCCh
Confidence 578999999999999999999999999999999875 34332 33332 1221 3799999999999999
Q ss_pred ccchH
Q psy9486 141 HLTKS 145 (165)
Q Consensus 141 ~l~~~ 145 (165)
.+.++
T Consensus 160 ~vR~~ 164 (493)
T PRK08244 160 IVRKQ 164 (493)
T ss_pred HHHHh
Confidence 88766
No 46
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=98.12 E-value=1.7e-05 Score=71.56 Aligned_cols=82 Identities=21% Similarity=0.225 Sum_probs=64.4
Q ss_pred EEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486 63 VVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL 142 (165)
Q Consensus 63 ~i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l 142 (165)
.++-..+...|+..|++.|++|++.++|+++..+ +++|+||++.+. .+|+ +.+|+|+.||.|+|+|+
T Consensus 145 ~vdp~rl~~al~~~A~~~Ga~i~~~t~V~~i~~~-~~~v~gv~v~d~---~~g~-------~~~i~A~~VVnAaG~wa-- 211 (546)
T PRK11101 145 TVDPFRLTAANMLDAKEHGAQILTYHEVTGLIRE-GDTVCGVRVRDH---LTGE-------TQEIHAPVVVNAAGIWG-- 211 (546)
T ss_pred EECHHHHHHHHHHHHHhCCCEEEeccEEEEEEEc-CCeEEEEEEEEc---CCCc-------EEEEECCEEEECCChhH--
Confidence 5777888889999999999999999999999885 688999987531 1221 14799999999999997
Q ss_pred chHHHhhcCCCCCCCC
Q psy9486 143 TKSLSSRFNLRGQCMS 158 (165)
Q Consensus 143 ~~~l~~~~gl~~~~~~ 158 (165)
.++.+..++..++.|
T Consensus 212 -~~l~~~~g~~~~i~p 226 (546)
T PRK11101 212 -QHIAEYADLRIRMFP 226 (546)
T ss_pred -HHHHHhcCCCCceee
Confidence 667666676544444
No 47
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.12 E-value=1.3e-05 Score=73.02 Aligned_cols=70 Identities=23% Similarity=0.374 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcC-EEEEcccCCcccchHHH
Q psy9486 69 VVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAK-VTIFAEGCHGHLTKSLS 147 (165)
Q Consensus 69 ~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak-~VI~A~G~~s~l~~~l~ 147 (165)
+...|.+.+++.|++|+++++|++|+.+++|+|+||.... +|.. ..|+|+ .||+|+|..+.. ++|.
T Consensus 215 ~~~~l~~~~~~~gv~i~~~~~~~~Li~d~~g~V~Gv~~~~-----~~~~-------~~i~a~~aVilAtGGf~~N-~em~ 281 (584)
T PRK12835 215 LVARLRLALKDAGVPLWLDSPMTELITDPDGAVVGAVVER-----EGRT-------LRIGARRGVILATGGFDHD-MDWR 281 (584)
T ss_pred HHHHHHHHHHhCCceEEeCCEEEEEEECCCCcEEEEEEEe-----CCcE-------EEEEeceeEEEecCcccCC-HHHH
Confidence 4556778889999999999999999997679999998753 3432 368997 699999999987 6677
Q ss_pred hhcC
Q psy9486 148 SRFN 151 (165)
Q Consensus 148 ~~~g 151 (165)
++|.
T Consensus 282 ~~y~ 285 (584)
T PRK12835 282 KEYL 285 (584)
T ss_pred HHhC
Confidence 7764
No 48
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=98.11 E-value=2.5e-05 Score=68.60 Aligned_cols=67 Identities=27% Similarity=0.355 Sum_probs=55.0
Q ss_pred hHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcccch
Q psy9486 66 LGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLTK 144 (165)
Q Consensus 66 r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l~~ 144 (165)
-..+...|.+++++.|++|+++++|++|+.+ +++|+||.+.. .+|+. ..++|+.||+|+|..+....
T Consensus 130 g~~l~~~l~~~~~~~gv~i~~~t~v~~l~~~-~g~v~gv~~~~----~~g~~-------~~i~a~~VIlAtGg~~~n~~ 196 (466)
T PRK08274 130 GKALVNALYRSAERLGVEIRYDAPVTALELD-DGRFVGARAGS----AAGGA-------ERIRAKAVVLAAGGFESNRE 196 (466)
T ss_pred HHHHHHHHHHHHHHCCCEEEcCCEEEEEEec-CCeEEEEEEEc----cCCce-------EEEECCEEEECCCCCCCCHH
Confidence 3568889999999999999999999999985 68999998753 23332 47999999999999887643
No 49
>PRK06847 hypothetical protein; Provisional
Probab=98.11 E-value=2.6e-05 Score=65.92 Aligned_cols=70 Identities=16% Similarity=0.218 Sum_probs=57.8
Q ss_pred CcEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCC
Q psy9486 60 GNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH 139 (165)
Q Consensus 60 ~~~~i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~ 139 (165)
..+.+.|..+.+.|.+.+++.|++|+.+++|+++..+ ++. +.|.+.+ |.++.||.||+|+|.+
T Consensus 100 ~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~-~~~-~~v~~~~---------------g~~~~ad~vI~AdG~~ 162 (375)
T PRK06847 100 GGGGIMRPALARILADAARAAGADVRLGTTVTAIEQD-DDG-VTVTFSD---------------GTTGRYDLVVGADGLY 162 (375)
T ss_pred CcccCcHHHHHHHHHHHHHHhCCEEEeCCEEEEEEEc-CCE-EEEEEcC---------------CCEEEcCEEEECcCCC
Confidence 3567899999999999999999999999999999775 343 3455543 3579999999999999
Q ss_pred cccchHH
Q psy9486 140 GHLTKSL 146 (165)
Q Consensus 140 s~l~~~l 146 (165)
|.+.+++
T Consensus 163 s~~r~~l 169 (375)
T PRK06847 163 SKVRSLV 169 (375)
T ss_pred cchhhHh
Confidence 9997764
No 50
>PRK11445 putative oxidoreductase; Provisional
Probab=98.10 E-value=1.4e-05 Score=67.82 Aligned_cols=71 Identities=18% Similarity=0.267 Sum_probs=54.1
Q ss_pred cEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCc
Q psy9486 61 NYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG 140 (165)
Q Consensus 61 ~~~i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s 140 (165)
.+.++|..||++|.+. .+.||+++.++.++++..++++ +.|.+.+ +|+. .+++|++||+|+|.+|
T Consensus 93 ~~~i~R~~~~~~L~~~-~~~gv~v~~~~~v~~i~~~~~~--~~v~~~~-----~g~~-------~~i~a~~vV~AdG~~S 157 (351)
T PRK11445 93 YINIDRHKFDLWLKSL-IPASVEVYHNSLCRKIWREDDG--YHVIFRA-----DGWE-------QHITARYLVGADGANS 157 (351)
T ss_pred cccccHHHHHHHHHHH-HhcCCEEEcCCEEEEEEEcCCE--EEEEEec-----CCcE-------EEEEeCEEEECCCCCc
Confidence 3579999999999985 5789999999999999875333 2344422 2211 2699999999999999
Q ss_pred ccchHH
Q psy9486 141 HLTKSL 146 (165)
Q Consensus 141 ~l~~~l 146 (165)
.+++++
T Consensus 158 ~vr~~l 163 (351)
T PRK11445 158 MVRRHL 163 (351)
T ss_pred HHhHHh
Confidence 987763
No 51
>PRK06996 hypothetical protein; Provisional
Probab=98.08 E-value=3.8e-05 Score=66.08 Aligned_cols=73 Identities=25% Similarity=0.299 Sum_probs=54.3
Q ss_pred CCcEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccC
Q psy9486 59 HGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGC 138 (165)
Q Consensus 59 ~~~~~i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~ 138 (165)
..+|+++|..+++.|.+++++.|++++.+++++++..+. ..| -|...+ .+| +..++|++||.|+|.
T Consensus 107 ~~g~~v~r~~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~-~~v-~v~~~~----~~g--------~~~i~a~lvIgADG~ 172 (398)
T PRK06996 107 ALGYVVRYGSLVAALARAVRGTPVRWLTSTTAHAPAQDA-DGV-TLALGT----PQG--------ARTLRARIAVQAEGG 172 (398)
T ss_pred cCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeeeeeeecC-CeE-EEEECC----CCc--------ceEEeeeEEEECCCC
Confidence 348999999999999999999999999999999996643 222 233332 112 147999999999997
Q ss_pred C-cccchH
Q psy9486 139 H-GHLTKS 145 (165)
Q Consensus 139 ~-s~l~~~ 145 (165)
. |++.+.
T Consensus 173 ~~s~~r~~ 180 (398)
T PRK06996 173 LFHDQKAD 180 (398)
T ss_pred CchHHHHH
Confidence 4 544443
No 52
>PRK07588 hypothetical protein; Provisional
Probab=98.08 E-value=3.5e-05 Score=65.91 Aligned_cols=67 Identities=16% Similarity=0.145 Sum_probs=54.0
Q ss_pred cEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCc
Q psy9486 61 NYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG 140 (165)
Q Consensus 61 ~~~i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s 140 (165)
.+.+.|..|.+.|.+.+. .|++|+++++|+++..+ ++.|. |.+.+ |..+.|++||.|+|.+|
T Consensus 97 ~~~i~r~~l~~~L~~~~~-~~v~i~~~~~v~~i~~~-~~~v~-v~~~~---------------g~~~~~d~vIgADG~~S 158 (391)
T PRK07588 97 FTSLPRGDLAAAIYTAID-GQVETIFDDSIATIDEH-RDGVR-VTFER---------------GTPRDFDLVIGADGLHS 158 (391)
T ss_pred eEEEEHHHHHHHHHHhhh-cCeEEEeCCEEeEEEEC-CCeEE-EEECC---------------CCEEEeCEEEECCCCCc
Confidence 468999999999988654 48999999999999875 44433 55543 35789999999999999
Q ss_pred ccchH
Q psy9486 141 HLTKS 145 (165)
Q Consensus 141 ~l~~~ 145 (165)
.+.+.
T Consensus 159 ~vR~~ 163 (391)
T PRK07588 159 HVRRL 163 (391)
T ss_pred cchhh
Confidence 99665
No 53
>PRK07190 hypothetical protein; Provisional
Probab=98.07 E-value=2.2e-05 Score=69.97 Aligned_cols=73 Identities=14% Similarity=0.216 Sum_probs=58.9
Q ss_pred cEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCc
Q psy9486 61 NYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG 140 (165)
Q Consensus 61 ~~~i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s 140 (165)
.+.+.+..+.+.|.+++++.|++|+.+++|+++..++ +.|+ |.+.+ |.+++|++||+|+|++|
T Consensus 103 ~~~~~q~~le~~L~~~~~~~Gv~v~~~~~v~~l~~~~-~~v~-v~~~~---------------g~~v~a~~vVgADG~~S 165 (487)
T PRK07190 103 FLMLGQSYVEKLLDDKLKEAGAAVKRNTSVVNIELNQ-AGCL-TTLSN---------------GERIQSRYVIGADGSRS 165 (487)
T ss_pred eEecCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcC-CeeE-EEECC---------------CcEEEeCEEEECCCCCH
Confidence 4678899999999999999999999999999998864 3332 23332 34799999999999999
Q ss_pred ccchHHHhhcCCCC
Q psy9486 141 HLTKSLSSRFNLRG 154 (165)
Q Consensus 141 ~l~~~l~~~~gl~~ 154 (165)
.+.++ +|+.-
T Consensus 166 ~vR~~----lgi~f 175 (487)
T PRK07190 166 FVRNH----FNVPF 175 (487)
T ss_pred HHHHH----cCCCc
Confidence 88777 67653
No 54
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.06 E-value=1.5e-05 Score=72.29 Aligned_cols=66 Identities=20% Similarity=0.293 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486 67 GHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL 142 (165)
Q Consensus 67 ~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l 142 (165)
..+.+.|.+++++.||+|++.+.+++|+.+++|+|+||...+. .+|+. ..|+||.||+|||..+.+
T Consensus 126 ~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~---~~g~~-------~~i~AkaVVLATGG~~~~ 191 (570)
T PRK05675 126 HALLHTLYQGNLKNGTTFLNEWYAVDLVKNQDGAVVGVIAICI---ETGET-------VYIKSKATVLATGGAGRI 191 (570)
T ss_pred HHHHHHHHHHHhccCCEEEECcEEEEEEEcCCCeEEEEEEEEc---CCCcE-------EEEecCeEEECCCCcccc
Confidence 5688899999999999999999999999865799999987431 24543 379999999999999865
No 55
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=98.04 E-value=4.1e-05 Score=65.82 Aligned_cols=75 Identities=21% Similarity=0.206 Sum_probs=57.9
Q ss_pred EEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486 63 VVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL 142 (165)
Q Consensus 63 ~i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l 142 (165)
.++-..+...|++.|++.|++++.+++|+++..++++++++|++.+ | .+.|+.||+|+|+++.
T Consensus 179 ~v~p~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~~~v~t~~---------------g-~i~a~~vVvaagg~~~- 241 (407)
T TIGR01373 179 TARHDAVAWGYARGADRRGVDIIQNCEVTGFIRRDGGRVIGVETTR---------------G-FIGAKKVGVAVAGHSS- 241 (407)
T ss_pred cCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEeCC---------------c-eEECCEEEECCChhhH-
Confidence 3455677888999999999999999999999764457788888875 3 7999999999888873
Q ss_pred chHHHhhcCCCCCC
Q psy9486 143 TKSLSSRFNLRGQC 156 (165)
Q Consensus 143 ~~~l~~~~gl~~~~ 156 (165)
.+.+.+++..+.
T Consensus 242 --~l~~~~g~~~~~ 253 (407)
T TIGR01373 242 --VVAAMAGFRLPI 253 (407)
T ss_pred --HHHHHcCCCCCc
Confidence 344446665333
No 56
>PRK06184 hypothetical protein; Provisional
Probab=98.04 E-value=2.7e-05 Score=69.12 Aligned_cols=72 Identities=15% Similarity=0.132 Sum_probs=56.9
Q ss_pred CcEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCC
Q psy9486 60 GNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH 139 (165)
Q Consensus 60 ~~~~i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~ 139 (165)
.++++.+..+.+.|.+.+.+.|++|+.+++|+++..++ +.|+ |.+.. .++ +..++|++||.|+|++
T Consensus 102 ~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~i~~~~-~~v~-v~~~~----~~~--------~~~i~a~~vVgADG~~ 167 (502)
T PRK06184 102 LPLMVPQWRTERILRERLAELGHRVEFGCELVGFEQDA-DGVT-ARVAG----PAG--------EETVRARYLVGADGGR 167 (502)
T ss_pred cceecCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEEcC-CcEE-EEEEe----CCC--------eEEEEeCEEEECCCCc
Confidence 36789999999999999999999999999999998763 4343 22211 011 3579999999999999
Q ss_pred cccchH
Q psy9486 140 GHLTKS 145 (165)
Q Consensus 140 s~l~~~ 145 (165)
|.+.++
T Consensus 168 S~vR~~ 173 (502)
T PRK06184 168 SFVRKA 173 (502)
T ss_pred hHHHHh
Confidence 988776
No 57
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.03 E-value=3.1e-05 Score=66.25 Aligned_cols=68 Identities=16% Similarity=0.183 Sum_probs=56.0
Q ss_pred cEEEEhHHHHHHHHHHHHH-CCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCC
Q psy9486 61 NYVVRLGHVVKWLGEQAEA-MGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH 139 (165)
Q Consensus 61 ~~~i~r~~~d~~L~~~A~~-~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~ 139 (165)
+|++.+..+...|.+++++ .|++++.+++|+++..++ +.+ -|.+.+ |.+++|++||+|+|.+
T Consensus 104 g~~i~~~~l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~-~~~-~v~~~~---------------g~~~~~~lvIgADG~~ 166 (384)
T PRK08849 104 GYIVENRLIQLGLWQQFAQYPNLTLMCPEKLADLEFSA-EGN-RVTLES---------------GAEIEAKWVIGADGAN 166 (384)
T ss_pred EEEEEcHHHHHHHHHHHHhCCCeEEECCCceeEEEEcC-CeE-EEEECC---------------CCEEEeeEEEEecCCC
Confidence 6999998999999999877 479999999999998863 333 255543 3589999999999999
Q ss_pred cccchH
Q psy9486 140 GHLTKS 145 (165)
Q Consensus 140 s~l~~~ 145 (165)
|.+.+.
T Consensus 167 S~vR~~ 172 (384)
T PRK08849 167 SQVRQL 172 (384)
T ss_pred chhHHh
Confidence 999777
No 58
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.03 E-value=2.4e-05 Score=70.81 Aligned_cols=71 Identities=27% Similarity=0.493 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEc-CEEEEcccCCcccchH
Q psy9486 67 GHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHA-KVTIFAEGCHGHLTKS 145 (165)
Q Consensus 67 ~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~A-k~VI~A~G~~s~l~~~ 145 (165)
..+...|.++|++.||+|+++++|++|+.+ +++|+||.+.. +|+. .+|.| +.||+|+|..+.. ++
T Consensus 208 ~~l~~~l~~~~~~~gv~i~~~~~v~~Li~~-~g~v~Gv~~~~-----~g~~-------~~i~A~~aVIlAtGG~~~N-~e 273 (557)
T PRK12844 208 AALIGRMLEAALAAGVPLWTNTPLTELIVE-DGRVVGVVVVR-----DGRE-------VLIRARRGVLLASGGFGHN-AE 273 (557)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEe-CCEEEEEEEEE-----CCeE-------EEEEecceEEEecCCccCC-HH
Confidence 456778899999999999999999999986 79999998853 3332 36899 5799999999887 66
Q ss_pred HHhhcC
Q psy9486 146 LSSRFN 151 (165)
Q Consensus 146 l~~~~g 151 (165)
|.++|.
T Consensus 274 m~~~~~ 279 (557)
T PRK12844 274 MRKRYQ 279 (557)
T ss_pred HHHHhc
Confidence 666664
No 59
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.02 E-value=2.8e-05 Score=66.28 Aligned_cols=74 Identities=16% Similarity=0.151 Sum_probs=57.6
Q ss_pred CCcEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccC
Q psy9486 59 HGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGC 138 (165)
Q Consensus 59 ~~~~~i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~ 138 (165)
..+|.+.+..+.+.|.+++.+.|...+.+++|.++..+ ++.+. |.+.+ |..++||.||+|+|.
T Consensus 103 ~~g~~i~~~~l~~~L~~~~~~~~~~~~~~~~v~~i~~~-~~~~~-v~~~~---------------g~~~~a~~vI~AdG~ 165 (388)
T PRK07494 103 AFGYNIPNWLLNRALEARVAELPNITRFGDEAESVRPR-EDEVT-VTLAD---------------GTTLSARLVVGADGR 165 (388)
T ss_pred ccEEEeEhHHHHHHHHHHHhcCCCcEEECCeeEEEEEc-CCeEE-EEECC---------------CCEEEEeEEEEecCC
Confidence 34799999999999999999875333789999999875 34433 55543 357999999999999
Q ss_pred CcccchHHHhhcCCC
Q psy9486 139 HGHLTKSLSSRFNLR 153 (165)
Q Consensus 139 ~s~l~~~l~~~~gl~ 153 (165)
+|.+.+. +++.
T Consensus 166 ~S~vr~~----~g~~ 176 (388)
T PRK07494 166 NSPVREA----AGIG 176 (388)
T ss_pred CchhHHh----cCCC
Confidence 9988666 5654
No 60
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=98.02 E-value=3.6e-05 Score=67.07 Aligned_cols=68 Identities=24% Similarity=0.288 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHCCCEEecCCceeEEEEcC-CCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcccchH
Q psy9486 67 GHVVKWLGEQAEAMGVEIYPGIPASEVLYHG-DGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLTKS 145 (165)
Q Consensus 67 ~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~-~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l~~~ 145 (165)
..+.+.|.++|++.|++|+++++|++|+.++ +++|+||.+.. + +..+.||.||+|+|..+.. +.
T Consensus 123 ~~l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~-----~---------~~~i~ak~VIlAtGG~~~n-~~ 187 (432)
T TIGR02485 123 KALTNALYSSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTV-----G---------THRITTQALVLAAGGLGAN-RD 187 (432)
T ss_pred HHHHHHHHHHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEEcC-----C---------cEEEEcCEEEEcCCCcccC-HH
Confidence 4578899999999999999999999998863 57899988743 1 2479999999999998877 44
Q ss_pred HHhh
Q psy9486 146 LSSR 149 (165)
Q Consensus 146 l~~~ 149 (165)
+.++
T Consensus 188 ~~~~ 191 (432)
T TIGR02485 188 WLRK 191 (432)
T ss_pred HHHh
Confidence 4444
No 61
>PLN02661 Putative thiazole synthesis
Probab=98.00 E-value=6.6e-05 Score=64.75 Aligned_cols=88 Identities=19% Similarity=0.250 Sum_probs=61.5
Q ss_pred CcEEEEh--HHHHHHHHHHHHH-CCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcc
Q psy9486 60 GNYVVRL--GHVVKWLGEQAEA-MGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAE 136 (165)
Q Consensus 60 ~~~~i~r--~~~d~~L~~~A~~-~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~ 136 (165)
++|.+.+ ..+.+.|.+++.+ .|++++..+.|.+++.+ +++|.||.+++..+..++....-..| ..|+||.||+||
T Consensus 163 dgy~vv~ha~e~~stLi~ka~~~~gVkI~~~t~V~DLI~~-~grVaGVVvnw~~v~~~~~~~s~~dp-~~I~AkaVVlAT 240 (357)
T PLN02661 163 ENYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVK-GDRVGGVVTNWALVAQNHDTQSCMDP-NVMEAKVVVSSC 240 (357)
T ss_pred CCeeEecchHHHHHHHHHHHHhcCCCEEEeCeEeeeEEec-CCEEEEEEeecchhhhccCCCCccce-eEEECCEEEEcC
Confidence 3455542 4566678887765 89999999999999996 78999999876433233332110111 369999999999
Q ss_pred cCCcccchHHHhh
Q psy9486 137 GCHGHLTKSLSSR 149 (165)
Q Consensus 137 G~~s~l~~~l~~~ 149 (165)
|..+.+.....++
T Consensus 241 Gh~g~~ga~~~~~ 253 (357)
T PLN02661 241 GHDGPFGATGVKR 253 (357)
T ss_pred CCCCcchhhhhhc
Confidence 9998776655444
No 62
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=98.00 E-value=2.1e-05 Score=72.03 Aligned_cols=66 Identities=21% Similarity=0.302 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486 67 GHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL 142 (165)
Q Consensus 67 ~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l 142 (165)
..+.+.|.++|++.||+|++++.+++|+.+++|+|+||...+. .+|+. ..|.||.||+|+|..+.+
T Consensus 166 ~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~---~~g~~-------~~i~AkaVVLATGG~~~~ 231 (617)
T PTZ00139 166 HAMLHTLYGQSLKYDCNFFIEYFALDLIMDEDGECRGVIAMSM---EDGSI-------HRFRAHYTVIATGGYGRA 231 (617)
T ss_pred HHHHHHHHHHHHhCCCEEEeceEEEEEEECCCCEEEEEEEEEC---CCCeE-------EEEECCcEEEeCCCCccc
Confidence 4788899999999999999999999999844789999976431 24433 378999999999998754
No 63
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=98.00 E-value=4.5e-05 Score=69.26 Aligned_cols=71 Identities=18% Similarity=0.188 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEc-CEEEEcccCCcccchH
Q psy9486 67 GHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHA-KVTIFAEGCHGHLTKS 145 (165)
Q Consensus 67 ~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~A-k~VI~A~G~~s~l~~~ 145 (165)
..+...|.+++++.||+|+++++|++++.+ +++|+||.+.. +|+. ..|.| +.||+|+|..+.. ++
T Consensus 221 ~~l~~aL~~~~~~~Gv~i~~~t~v~~Li~~-~g~V~GV~~~~-----~g~~-------~~i~A~~~VVlAtGg~~~n-~e 286 (578)
T PRK12843 221 NALIGRLLYSLRARGVRILTQTDVESLETD-HGRVIGATVVQ-----GGVR-------RRIRARGGVVLATGGFNRH-PQ 286 (578)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEee-CCEEEEEEEec-----CCeE-------EEEEccceEEECCCCcccC-HH
Confidence 357788999999999999999999999886 79999998864 2322 35886 7899999999988 67
Q ss_pred HHhhcC
Q psy9486 146 LSSRFN 151 (165)
Q Consensus 146 l~~~~g 151 (165)
|+++|.
T Consensus 287 m~~~~~ 292 (578)
T PRK12843 287 LRRELL 292 (578)
T ss_pred HHHHhC
Confidence 777774
No 64
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=97.99 E-value=6.5e-05 Score=68.28 Aligned_cols=68 Identities=34% Similarity=0.445 Sum_probs=55.3
Q ss_pred EEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEc-CEEEEcccCCccc
Q psy9486 64 VRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHA-KVTIFAEGCHGHL 142 (165)
Q Consensus 64 i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~A-k~VI~A~G~~s~l 142 (165)
+.-..|.+.|.+.|++.||+|+++++|++|+.+ +++|+||++.. ++.. ..++| +.||+|+|.++..
T Consensus 214 ~~g~~l~~~L~~~a~~~Gv~i~~~t~v~~l~~~-~g~v~GV~~~~-----~~~~-------~~i~a~k~VVlAtGg~~~n 280 (581)
T PRK06134 214 VNGNALVARLLKSAEDLGVRIWESAPARELLRE-DGRVAGAVVET-----PGGL-------QEIRARKGVVLAAGGFPHD 280 (581)
T ss_pred cCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEe-CCEEEEEEEEE-----CCcE-------EEEEeCCEEEEcCCCcccC
Confidence 444568889999999999999999999999986 78999998754 1211 26899 9999999999876
Q ss_pred ch
Q psy9486 143 TK 144 (165)
Q Consensus 143 ~~ 144 (165)
..
T Consensus 281 ~~ 282 (581)
T PRK06134 281 PA 282 (581)
T ss_pred HH
Confidence 43
No 65
>PRK08163 salicylate hydroxylase; Provisional
Probab=97.99 E-value=3.4e-05 Score=65.83 Aligned_cols=69 Identities=16% Similarity=0.111 Sum_probs=56.0
Q ss_pred cEEEEhHHHHHHHHHHHHHCC-CEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCC
Q psy9486 61 NYVVRLGHVVKWLGEQAEAMG-VEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH 139 (165)
Q Consensus 61 ~~~i~r~~~d~~L~~~A~~~G-v~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~ 139 (165)
.+++.|..+.+.|.+++.+.| ++++++++|+++..+ ++.+. |.+.+ |.++.|++||+|+|.+
T Consensus 103 ~~~i~r~~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~-~~~v~-v~~~~---------------g~~~~ad~vV~AdG~~ 165 (396)
T PRK08163 103 YAVIHRADIHLSLLEAVLDHPLVEFRTSTHVVGIEQD-GDGVT-VFDQQ---------------GNRWTGDALIGCDGVK 165 (396)
T ss_pred EEEEEHHHHHHHHHHHHHhcCCcEEEeCCEEEEEecC-CCceE-EEEcC---------------CCEEecCEEEECCCcC
Confidence 468999999999999998875 999999999999875 34333 55443 3579999999999999
Q ss_pred cccchHH
Q psy9486 140 GHLTKSL 146 (165)
Q Consensus 140 s~l~~~l 146 (165)
|.+.+++
T Consensus 166 S~~r~~~ 172 (396)
T PRK08163 166 SVVRQSL 172 (396)
T ss_pred hHHHhhc
Confidence 9886664
No 66
>PRK06834 hypothetical protein; Provisional
Probab=97.98 E-value=4.3e-05 Score=68.05 Aligned_cols=69 Identities=22% Similarity=0.316 Sum_probs=57.0
Q ss_pred CcEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCC
Q psy9486 60 GNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH 139 (165)
Q Consensus 60 ~~~~i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~ 139 (165)
.++.+.+..+.+.|.+.+++.|++|+.+++|+++..++ +.| .|.+.+ |.+++|++||.|+|.+
T Consensus 93 ~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~v~~~~-~~v-~v~~~~---------------g~~i~a~~vVgADG~~ 155 (488)
T PRK06834 93 YGLALWQNHIERILAEWVGELGVPIYRGREVTGFAQDD-TGV-DVELSD---------------GRTLRAQYLVGCDGGR 155 (488)
T ss_pred ccccccHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcC-CeE-EEEECC---------------CCEEEeCEEEEecCCC
Confidence 36788999999999999999999999999999998863 333 344432 3479999999999999
Q ss_pred cccchH
Q psy9486 140 GHLTKS 145 (165)
Q Consensus 140 s~l~~~ 145 (165)
|.+.+.
T Consensus 156 S~vR~~ 161 (488)
T PRK06834 156 SLVRKA 161 (488)
T ss_pred CCcHhh
Confidence 988666
No 67
>PTZ00367 squalene epoxidase; Provisional
Probab=97.97 E-value=4.9e-05 Score=69.16 Aligned_cols=104 Identities=13% Similarity=0.223 Sum_probs=68.3
Q ss_pred ceEEEEcCC-ceEEecCCCCCCCCCCCcEEEEhHHHHHHHHHHH---HHCCCEEecCCceeEEEEcCC---CcEEEEEEc
Q psy9486 35 DKFAYLTKS-KRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQA---EAMGVEIYPGIPASEVLYHGD---GSVKGIATG 107 (165)
Q Consensus 35 ~~~~~~~~~-~~l~i~~~~~~~~~~~~~~~i~r~~~d~~L~~~A---~~~Gv~i~~~~~v~~i~~~~~---g~V~GV~~~ 107 (165)
.++++...+ ..+.+++.. ...++.+.|..|.+.|.+++ ...||+++++ +|++++.++. .++.||+..
T Consensus 103 ~~~~v~~~~G~~~~i~~~~-----~~~g~~~~rg~~~~~Lr~~a~~~~~~~V~v~~~-~v~~l~~~~~~~~~~v~gV~~~ 176 (567)
T PTZ00367 103 FGYVVFDHKGKQVKLPYGA-----GASGVSFHFGDFVQNLRSHVFHNCQDNVTMLEG-TVNSLLEEGPGFSERAYGVEYT 176 (567)
T ss_pred eeeEEEECCCCEEEecCCC-----CCceeEeEHHHHHHHHHHHHHhhcCCCcEEEEe-EEEEeccccCccCCeeEEEEEe
Confidence 345555543 355666632 23467889999999999888 4579999764 7888876532 248888765
Q ss_pred cccccCCCCCCCC------------CCcCeEEEcCEEEEcccCCcccchHH
Q psy9486 108 DVGIAKDGSPKDT------------FARGMELHAKVTIFAEGCHGHLTKSL 146 (165)
Q Consensus 108 ~~g~~~~g~~~~~------------~~~g~~i~Ak~VI~A~G~~s~l~~~l 146 (165)
..+ ..+-+..+ ...+.+++|++||+|+|.+|.+.+++
T Consensus 177 ~~~--~~~~~~~~f~~~~~~~~~~~~~~g~~~~AdLvVgADG~~S~vR~~l 225 (567)
T PTZ00367 177 EAE--KYDVPENPFREDPPSANPSATTVRKVATAPLVVMCDGGMSKFKSRY 225 (567)
T ss_pred cCC--cccccccccccccccccccccccceEEEeCEEEECCCcchHHHHHc
Confidence 311 00001111 12356899999999999999997774
No 68
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=97.96 E-value=6.4e-05 Score=67.39 Aligned_cols=72 Identities=14% Similarity=0.160 Sum_probs=59.9
Q ss_pred cEEEEhHHHHHHHHHHHHH----CC--CEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEE
Q psy9486 61 NYVVRLGHVVKWLGEQAEA----MG--VEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIF 134 (165)
Q Consensus 61 ~~~i~r~~~d~~L~~~A~~----~G--v~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~ 134 (165)
+..++-..+.+.|.+.|++ .| ++|+++++|++|..+ ++.++.|.|.+ | +++|+.||+
T Consensus 205 g~~Vd~~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~-~~~~~~V~T~~---------------G-~i~A~~VVv 267 (497)
T PTZ00383 205 LTTVDYQKLSESFVKHARRDALVPGKKISINLNTEVLNIERS-NDSLYKIHTNR---------------G-EIRARFVVV 267 (497)
T ss_pred CEEECHHHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEec-CCCeEEEEECC---------------C-EEEeCEEEE
Confidence 3578888999999999999 88 889999999999875 46667788764 3 799999999
Q ss_pred cccCCcccchHHHhhcCC
Q psy9486 135 AEGCHGHLTKSLSSRFNL 152 (165)
Q Consensus 135 A~G~~s~l~~~l~~~~gl 152 (165)
|+|+|+ ..|.+++|+
T Consensus 268 aAG~~S---~~La~~~Gi 282 (497)
T PTZ00383 268 SACGYS---LLFAQKMGY 282 (497)
T ss_pred CcChhH---HHHHHHhCC
Confidence 999997 566666776
No 69
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=97.95 E-value=3.3e-05 Score=70.04 Aligned_cols=65 Identities=20% Similarity=0.310 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486 67 GHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL 142 (165)
Q Consensus 67 ~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l 142 (165)
..+.+.|.+++++.||+|++++.|++|+.+ +|+|+||...+. .+|.. ..|+||.||+|+|..+.+
T Consensus 119 ~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~-~g~v~Ga~~~~~---~~g~~-------~~i~AkaVILATGG~~~~ 183 (565)
T TIGR01816 119 HAILHTLYQQNLKADTSFFNEYFALDLLME-DGECRGVIAYCL---ETGEI-------HRFRAKAVVLATGGYGRI 183 (565)
T ss_pred HHHHHHHHHHHHhCCCEEEeccEEEEEEee-CCEEEEEEEEEc---CCCcE-------EEEEeCeEEECCCCcccc
Confidence 467889999999999999999999999986 799999977431 23433 379999999999998854
No 70
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=97.92 E-value=9.3e-05 Score=66.35 Aligned_cols=72 Identities=13% Similarity=0.172 Sum_probs=56.7
Q ss_pred cEEEEhHHHHHHHHHHHHHC-CCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCC
Q psy9486 61 NYVVRLGHVVKWLGEQAEAM-GVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH 139 (165)
Q Consensus 61 ~~~i~r~~~d~~L~~~A~~~-Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~ 139 (165)
.+.+.+..+.+.|.+.+.+. |++|+.+++|+++..++ +.| .|.+.+ .+|+. .+++|++||.|+|++
T Consensus 107 ~~~~~q~~le~~L~~~~~~~~gv~v~~g~~v~~i~~~~-~~v-~v~~~~----~~G~~-------~~i~ad~vVgADG~~ 173 (538)
T PRK06183 107 RNAFHQPLLEAVLRAGLARFPHVRVRFGHEVTALTQDD-DGV-TVTLTD----ADGQR-------ETVRARYVVGCDGAN 173 (538)
T ss_pred hccCChHHHHHHHHHHHHhCCCcEEEcCCEEEEEEEcC-CeE-EEEEEc----CCCCE-------EEEEEEEEEecCCCc
Confidence 46788999999999999885 99999999999998864 333 244432 23322 479999999999999
Q ss_pred cccchH
Q psy9486 140 GHLTKS 145 (165)
Q Consensus 140 s~l~~~ 145 (165)
|.+.+.
T Consensus 174 S~vR~~ 179 (538)
T PRK06183 174 SFVRRT 179 (538)
T ss_pred hhHHHH
Confidence 999777
No 71
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=97.92 E-value=4.9e-05 Score=66.27 Aligned_cols=61 Identities=25% Similarity=0.384 Sum_probs=52.0
Q ss_pred cEEEEhHHHHHHHHHHHHH-CCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccC
Q psy9486 61 NYVVRLGHVVKWLGEQAEA-MGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGC 138 (165)
Q Consensus 61 ~~~i~r~~~d~~L~~~A~~-~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~ 138 (165)
.+.++|..|.+|+.+.+++ .+++|+ ...|++|+.+ +++|.||++.+ |..+.|+.||+|+|.
T Consensus 89 r~qvDr~~y~~~~~~~l~~~~nl~i~-~~~V~~l~~e-~~~v~GV~~~~---------------g~~~~a~~vVlaTGt 150 (392)
T PF01134_consen 89 RAQVDRDKYSRAMREKLESHPNLTII-QGEVTDLIVE-NGKVKGVVTKD---------------GEEIEADAVVLATGT 150 (392)
T ss_dssp EEEE-HHHHHHHHHHHHHTSTTEEEE-ES-EEEEEEC-TTEEEEEEETT---------------SEEEEECEEEE-TTT
T ss_pred HhhccHHHHHHHHHHHHhcCCCeEEE-EcccceEEec-CCeEEEEEeCC---------------CCEEecCEEEEeccc
Confidence 4589999999999999998 688887 5689999996 79999999986 578999999999998
No 72
>KOG1298|consensus
Probab=97.91 E-value=2.8e-05 Score=67.77 Aligned_cols=97 Identities=24% Similarity=0.414 Sum_probs=72.9
Q ss_pred EEcCCceEEecCCCCCCCCCCCcEEEEhHHHHHHHHHHHHH-CCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCC
Q psy9486 39 YLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEA-MGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSP 117 (165)
Q Consensus 39 ~~~~~~~l~i~~~~~~~~~~~~~~~i~r~~~d~~L~~~A~~-~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~ 117 (165)
+....+..++||+.........|-...-+.|.+-|.++|.. ..|++.++ +|.+++.| +|.|.||+..+ +.|+.
T Consensus 119 ifk~gk~v~~pyP~~~f~~d~~GrsFhnGRFvq~lR~ka~slpNV~~eeG-tV~sLlee-~gvvkGV~yk~----k~gee 192 (509)
T KOG1298|consen 119 IFKDGKEVDLPYPLKNFPSDPSGRSFHNGRFVQRLRKKAASLPNVRLEEG-TVKSLLEE-EGVVKGVTYKN----KEGEE 192 (509)
T ss_pred EEeCCceeeccCCCcCCCCCcccceeeccHHHHHHHHHHhcCCCeEEeee-eHHHHHhc-cCeEEeEEEec----CCCce
Confidence 33355788888875422233335566667899999999877 68888766 68888875 78999999987 55654
Q ss_pred CCCCCcCeEEEcCEEEEcccCCcccchHHHh
Q psy9486 118 KDTFARGMELHAKVTIFAEGCHGHLTKSLSS 148 (165)
Q Consensus 118 ~~~~~~g~~i~Ak~VI~A~G~~s~l~~~l~~ 148 (165)
.+..|..+|+|+|+.|.+.|.|.+
T Consensus 193 -------~~~~ApLTvVCDGcfSnlRrsL~~ 216 (509)
T KOG1298|consen 193 -------VEAFAPLTVVCDGCFSNLRRSLCD 216 (509)
T ss_pred -------EEEecceEEEecchhHHHHHHhcC
Confidence 378999999999999999888654
No 73
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.91 E-value=4.3e-05 Score=69.65 Aligned_cols=66 Identities=21% Similarity=0.290 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486 67 GHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL 142 (165)
Q Consensus 67 ~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l 142 (165)
..+...|.+++++.|++|++++.|++|+.+++|+|+||...+. .+|+. ..|+||.||+|+|..+.+
T Consensus 143 ~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~---~~g~~-------~~i~AkaVILATGG~~~~ 208 (588)
T PRK08958 143 HALLHTLYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTAICI---ETGEV-------VYFKARATVLATGGAGRI 208 (588)
T ss_pred HHHHHHHHHHhhhcCCEEEeCcEEEEEEECCCCEEEEEEEEEc---CCCcE-------EEEEcCeEEECCCCcccc
Confidence 4578889999999999999999999999865789999987431 24433 368999999999998854
No 74
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=97.90 E-value=9.3e-05 Score=62.61 Aligned_cols=72 Identities=21% Similarity=0.200 Sum_probs=56.1
Q ss_pred cEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCc
Q psy9486 61 NYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG 140 (165)
Q Consensus 61 ~~~i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s 140 (165)
+..++-..+.+.|.+.|++.|++++.+++|+++..+ ++.+ .|.+.+ .++.|+.||+|+|.++
T Consensus 139 ~g~i~p~~~~~~l~~~~~~~g~~~~~~~~V~~i~~~-~~~~-~v~~~~----------------~~i~a~~vV~aaG~~~ 200 (380)
T TIGR01377 139 GGVLYAEKALRALQELAEAHGATVRDGTKVVEIEPT-ELLV-TVKTTK----------------GSYQANKLVVTAGAWT 200 (380)
T ss_pred CcEEcHHHHHHHHHHHHHHcCCEEECCCeEEEEEec-CCeE-EEEeCC----------------CEEEeCEEEEecCcch
Confidence 456677889999999999999999999999999875 4443 476654 3799999999999985
Q ss_pred ccchHHHhhcCCC
Q psy9486 141 HLTKSLSSRFNLR 153 (165)
Q Consensus 141 ~l~~~l~~~~gl~ 153 (165)
.++.+++|+.
T Consensus 201 ---~~l~~~~g~~ 210 (380)
T TIGR01377 201 ---SKLLSPLGIE 210 (380)
T ss_pred ---HHHhhhcccC
Confidence 3444455544
No 75
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=97.89 E-value=7.5e-05 Score=65.67 Aligned_cols=63 Identities=19% Similarity=0.215 Sum_probs=52.0
Q ss_pred EEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCC-c
Q psy9486 64 VRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH-G 140 (165)
Q Consensus 64 i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~-s 140 (165)
+.-..+.+.|.+.++++|++|+.+++|.++..+ ++++++|.+.+ +. ...+.||.||+|+|+| |
T Consensus 260 v~G~RL~~aL~~~~~~~Gg~il~g~~V~~i~~~-~~~v~~V~t~~------g~-------~~~l~AD~vVLAaGaw~S 323 (419)
T TIGR03378 260 LLGIRLEEALKHRFEQLGGVMLPGDRVLRAEFE-GNRVTRIHTRN------HR-------DIPLRADHFVLASGSFFS 323 (419)
T ss_pred CcHHHHHHHHHHHHHHCCCEEEECcEEEEEEee-CCeEEEEEecC------Cc-------cceEECCEEEEccCCCcC
Confidence 444567788999999999999999999999886 68888888764 10 1379999999999999 5
No 76
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.89 E-value=4.5e-05 Score=69.64 Aligned_cols=66 Identities=18% Similarity=0.319 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486 67 GHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL 142 (165)
Q Consensus 67 ~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l 142 (165)
..+...|.+++++.||+|++++.|++|+.+++|+|+||...+. ++|.. ..|.|+.||+|+|..+.+
T Consensus 149 ~~i~~~L~~~~~~~gi~i~~~~~v~~Li~~~~g~v~Gv~~~~~---~~g~~-------~~i~AkaVVLATGG~~~~ 214 (598)
T PRK09078 149 HAILHTLYQQSLKHNAEFFIEYFALDLIMDDGGVCRGVVAWNL---DDGTL-------HRFRAHMVVLATGGYGRA 214 (598)
T ss_pred HHHHHHHHHHHhhcCCEEEEeEEEEEEEEcCCCEEEEEEEEEC---CCCcE-------EEEEcCEEEECCCCCccc
Confidence 3678899999999999999999999999864589999987431 24432 379999999999998853
No 77
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=97.88 E-value=2.7e-06 Score=74.41 Aligned_cols=70 Identities=29% Similarity=0.365 Sum_probs=0.0
Q ss_pred EEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcc
Q psy9486 62 YVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH 141 (165)
Q Consensus 62 ~~i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~ 141 (165)
+.+++..+..+|.+.++++||+|++++.|.+++.+ +++|+||.+.+ ++|. .+|+|++||+||| .+.
T Consensus 85 ~~~~~~~~~~~l~~~l~e~gv~v~~~t~v~~v~~~-~~~i~~V~~~~----~~g~--------~~i~A~~~IDaTG-~g~ 150 (428)
T PF12831_consen 85 VPFDPEVFKAVLDEMLAEAGVEVLLGTRVVDVIRD-GGRITGVIVET----KSGR--------KEIRAKVFIDATG-DGD 150 (428)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccc-ccccccccccc----cccc--------ccccccccccccc-ccc
Confidence 57778888888899999999999999999999996 78999999986 3442 4899999999999 465
Q ss_pred cchH
Q psy9486 142 LTKS 145 (165)
Q Consensus 142 l~~~ 145 (165)
|+..
T Consensus 151 l~~~ 154 (428)
T PF12831_consen 151 LAAL 154 (428)
T ss_dssp ----
T ss_pred cccc
Confidence 6555
No 78
>PRK08275 putative oxidoreductase; Provisional
Probab=97.88 E-value=6e-05 Score=68.07 Aligned_cols=66 Identities=30% Similarity=0.340 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486 67 GHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL 142 (165)
Q Consensus 67 ~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l 142 (165)
..+.++|.+++++.||+|++++.|++|+.+++++|+||.+.+. .+|+. ..+.||.||+|+|..+.+
T Consensus 137 ~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~g~v~Gv~~~~~---~~g~~-------~~i~Ak~VIlATGG~~~~ 202 (554)
T PRK08275 137 HDIKKVLYRQLKRARVLITNRIMATRLLTDADGRVAGALGFDC---RTGEF-------LVIRAKAVILCCGAAGRL 202 (554)
T ss_pred HHHHHHHHHHHHHCCCEEEcceEEEEEEEcCCCeEEEEEEEec---CCCcE-------EEEECCEEEECCCCcccc
Confidence 4678999999999999999999999999864689999976431 23432 368999999999998765
No 79
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=97.87 E-value=4.8e-05 Score=70.04 Aligned_cols=67 Identities=22% Similarity=0.306 Sum_probs=54.6
Q ss_pred hHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486 66 LGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL 142 (165)
Q Consensus 66 r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l 142 (165)
-..+.+.|.++|++.||+|++++.+.+|+.+++|+|+||.+.+. .+|+. ..|.||.||+|+|..+.+
T Consensus 186 G~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~---~~g~~-------~~i~AkaVILATGG~g~~ 252 (635)
T PLN00128 186 GHAMLHTLYGQAMKHNTQFFVEYFALDLIMDSDGACQGVIALNM---EDGTL-------HRFRAHSTILATGGYGRA 252 (635)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeeEEEEEEEcCCCEEEEEEEEEc---CCCeE-------EEEEcCeEEECCCCCccc
Confidence 35678899999999999999999999999864689999987541 24433 378999999999998854
No 80
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=97.86 E-value=5.1e-05 Score=68.42 Aligned_cols=78 Identities=22% Similarity=0.215 Sum_probs=63.4
Q ss_pred EEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcc
Q psy9486 62 YVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH 141 (165)
Q Consensus 62 ~~i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~ 141 (165)
+.++-..|.-..+..|.+.|+++++.++|+.++++ ++ |+||++.+. .+|+. .+|+|+.||.|+|.|+
T Consensus 159 ~~vddaRLv~~~a~~A~~~Ga~il~~~~v~~~~re-~~-v~gV~~~D~---~tg~~-------~~ira~~VVNAaGpW~- 225 (532)
T COG0578 159 GVVDDARLVAANARDAAEHGAEILTYTRVESLRRE-GG-VWGVEVEDR---ETGET-------YEIRARAVVNAAGPWV- 225 (532)
T ss_pred ceechHHHHHHHHHHHHhcccchhhcceeeeeeec-CC-EEEEEEEec---CCCcE-------EEEEcCEEEECCCccH-
Confidence 35566677777899999999999999999999996 56 999999872 24544 4799999999999997
Q ss_pred cchHHHhhcCCCC
Q psy9486 142 LTKSLSSRFNLRG 154 (165)
Q Consensus 142 l~~~l~~~~gl~~ 154 (165)
.++.+..++..
T Consensus 226 --d~i~~~~~~~~ 236 (532)
T COG0578 226 --DEILEMAGLEQ 236 (532)
T ss_pred --HHHHHhhcccC
Confidence 77777776653
No 81
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=97.85 E-value=0.00012 Score=65.60 Aligned_cols=69 Identities=16% Similarity=0.278 Sum_probs=53.4
Q ss_pred HHHHHHHHHHH-CCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcC-EEEEcccCCcccchHH
Q psy9486 69 VVKWLGEQAEA-MGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAK-VTIFAEGCHGHLTKSL 146 (165)
Q Consensus 69 ~d~~L~~~A~~-~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak-~VI~A~G~~s~l~~~l 146 (165)
+...|.+++++ .|++|+++++|++|+.+ +++|+||.... +|.. ..|+|+ .||+|+|..+.. ++|
T Consensus 175 l~~~l~~~~~~~~gv~i~~~t~~~~Li~~-~g~v~Gv~~~~-----~g~~-------~~i~A~k~VIlAtGG~~~n-~~m 240 (513)
T PRK12837 175 LIGRFLAALARFPNARLRLNTPLVELVVE-DGRVVGAVVER-----GGER-------RRVRARRGVLLAAGGFEQN-DDM 240 (513)
T ss_pred HHHHHHHHHHhCCCCEEEeCCEEEEEEec-CCEEEEEEEEE-----CCcE-------EEEEeCceEEEeCCCccCC-HHH
Confidence 44444555555 59999999999999986 78999998753 3432 379995 899999999887 678
Q ss_pred HhhcC
Q psy9486 147 SSRFN 151 (165)
Q Consensus 147 ~~~~g 151 (165)
.++|.
T Consensus 241 ~~~~~ 245 (513)
T PRK12837 241 RARYG 245 (513)
T ss_pred HHHhc
Confidence 88886
No 82
>PLN02697 lycopene epsilon cyclase
Probab=97.85 E-value=6.9e-05 Score=67.68 Aligned_cols=61 Identities=15% Similarity=0.139 Sum_probs=49.6
Q ss_pred EEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCc
Q psy9486 63 VVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG 140 (165)
Q Consensus 63 ~i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s 140 (165)
.++|..|+++|.++|.+.||++ .+++|+++..+ ++.+..+.+.+ |.+++|+.||+|+|++|
T Consensus 188 ~V~R~~L~~~Ll~~a~~~GV~~-~~~~V~~I~~~-~~~~~vv~~~d---------------G~~i~A~lVI~AdG~~S 248 (529)
T PLN02697 188 RVSRTLLHEELLRRCVESGVSY-LSSKVDRITEA-SDGLRLVACED---------------GRVIPCRLATVASGAAS 248 (529)
T ss_pred EEcHHHHHHHHHHHHHhcCCEE-EeeEEEEEEEc-CCcEEEEEEcC---------------CcEEECCEEEECCCcCh
Confidence 5999999999999999999998 57799998775 34443344433 35899999999999998
No 83
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=97.84 E-value=0.00022 Score=64.08 Aligned_cols=75 Identities=20% Similarity=0.239 Sum_probs=55.9
Q ss_pred cEEEEhHHHHHHHHHHHHHC-CCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCC
Q psy9486 61 NYVVRLGHVVKWLGEQAEAM-GVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH 139 (165)
Q Consensus 61 ~~~i~r~~~d~~L~~~A~~~-Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~ 139 (165)
.+.+.+..+.++|.+.+++. |++|+.+++|+++..++ +.+. +...+ .+| ..+++|++||.|+|.+
T Consensus 119 ~~~~~q~~le~~L~~~~~~~~~v~v~~~~~v~~i~~~~-~~v~-v~~~~----~~g--------~~~i~ad~vVgADG~~ 184 (547)
T PRK08132 119 FINLQQYYVEGYLVERAQALPNIDLRWKNKVTGLEQHD-DGVT-LTVET----PDG--------PYTLEADWVIACDGAR 184 (547)
T ss_pred eEecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEEcC-CEEE-EEEEC----CCC--------cEEEEeCEEEECCCCC
Confidence 34578999999999999885 79999999999998763 3322 33322 122 1369999999999999
Q ss_pred cccchHHHhhcCCC
Q psy9486 140 GHLTKSLSSRFNLR 153 (165)
Q Consensus 140 s~l~~~l~~~~gl~ 153 (165)
|.+.+. +|+.
T Consensus 185 S~vR~~----lg~~ 194 (547)
T PRK08132 185 SPLREM----LGLE 194 (547)
T ss_pred cHHHHH----cCCC
Confidence 988666 5653
No 84
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=97.84 E-value=8.7e-05 Score=66.32 Aligned_cols=72 Identities=15% Similarity=0.309 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcccchHH
Q psy9486 67 GHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLTKSL 146 (165)
Q Consensus 67 ~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l~~~l 146 (165)
..+...|.+.+++.|++|+++++|++|+.+ +++|+||.+.. .+|+. ..|+|+.||+|+|.++.. .++
T Consensus 190 ~~l~~~L~~~~~~~gv~i~~~t~v~~l~~~-~g~V~Gv~~~~----~~g~~-------~~i~a~~VVlAtGG~~~n-~~m 256 (506)
T PRK06481 190 GYLVDGLLKNVQERKIPLFVNADVTKITEK-DGKVTGVKVKI----NGKET-------KTISSKAVVVTTGGFGAN-KDM 256 (506)
T ss_pred HHHHHHHHHHHHHcCCeEEeCCeeEEEEec-CCEEEEEEEEe----CCCeE-------EEEecCeEEEeCCCcccC-HHH
Confidence 356778899999999999999999999875 68999998753 22221 369999999999998876 556
Q ss_pred HhhcC
Q psy9486 147 SSRFN 151 (165)
Q Consensus 147 ~~~~g 151 (165)
.++|.
T Consensus 257 ~~~~~ 261 (506)
T PRK06481 257 IAKYR 261 (506)
T ss_pred HHHhC
Confidence 66664
No 85
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.84 E-value=7.8e-05 Score=67.96 Aligned_cols=66 Identities=26% Similarity=0.380 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486 67 GHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL 142 (165)
Q Consensus 67 ~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l 142 (165)
..+.+.|.+++++.|+++++++.+.+++.+++|+|+||.+.+. .+|.. ..+.||.||+|+|..+.+
T Consensus 148 ~~l~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~---~~g~~-------~~i~AkaVILATGG~~~~ 213 (591)
T PRK07057 148 HALLHTLYQQNVAAKTQFFVEWMALDLIRDADGDVLGVTALEM---ETGDV-------YILEAKTTLFATGGAGRI 213 (591)
T ss_pred HHHHHHHHHHHHhcCCEEEeCcEEEEEEEcCCCeEEEEEEEEc---CCCeE-------EEEECCeEEECCCCcccc
Confidence 4688899999999999999999999999865689999987531 13322 368999999999998865
No 86
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.84 E-value=7.7e-05 Score=67.64 Aligned_cols=65 Identities=22% Similarity=0.317 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486 67 GHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL 142 (165)
Q Consensus 67 ~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l 142 (165)
..+.+.|.+++++.||+|++++.+++|+.+ +|+|+||.+.+. .+|+. ..|+||.||+|+|..+.+
T Consensus 136 ~~i~~~L~~~~~~~gv~i~~~~~~~~Li~~-~g~v~Gv~~~~~---~~g~~-------~~i~AkaVVLATGG~~~l 200 (566)
T PRK06452 136 MALLHTLFERTSGLNVDFYNEWFSLDLVTD-NKKVVGIVAMQM---KTLTP-------FFFKTKAVVLATGGMGML 200 (566)
T ss_pred HHHHHHHHHHHHhCCCEEEeCcEEEEEEEE-CCEEEEEEEEEC---CCCeE-------EEEEeCeEEECCCccccc
Confidence 356778899999999999999999999986 799999987641 12322 368999999999998854
No 87
>PRK06475 salicylate hydroxylase; Provisional
Probab=97.82 E-value=0.00017 Score=62.10 Aligned_cols=70 Identities=16% Similarity=0.114 Sum_probs=54.0
Q ss_pred EEEEhHHHHHHHHHHHHH-CCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCc
Q psy9486 62 YVVRLGHVVKWLGEQAEA-MGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG 140 (165)
Q Consensus 62 ~~i~r~~~d~~L~~~A~~-~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s 140 (165)
+.+.|..|.+.|.+++.+ .|++++++++|+++..+ ++.| .|...+ .++ +..+.||+||.|+|.+|
T Consensus 102 ~~i~r~~l~~~L~~~~~~~~~i~v~~~~~v~~~~~~-~~~v-~v~~~~----~~~--------~~~~~adlvIgADG~~S 167 (400)
T PRK06475 102 IVCHRADLQSALLDACRNNPGIEIKLGAEMTSQRQT-GNSI-TATIIR----TNS--------VETVSAAYLIACDGVWS 167 (400)
T ss_pred eeECHHHHHHHHHHHHHhcCCcEEEECCEEEEEecC-CCce-EEEEEe----CCC--------CcEEecCEEEECCCccH
Confidence 468999999999999977 58999999999999765 3443 233321 011 24699999999999999
Q ss_pred ccchH
Q psy9486 141 HLTKS 145 (165)
Q Consensus 141 ~l~~~ 145 (165)
.+.+.
T Consensus 168 ~vR~~ 172 (400)
T PRK06475 168 MLRAK 172 (400)
T ss_pred hHHhh
Confidence 99666
No 88
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=97.82 E-value=8e-05 Score=67.23 Aligned_cols=64 Identities=28% Similarity=0.446 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486 68 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL 142 (165)
Q Consensus 68 ~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l 142 (165)
.+...|.+++++.||+|++++.|++|+.+ +|+|+||...+. .+|+. ..+.|+.||+|+|..+.+
T Consensus 130 ~i~~~L~~~~~~~gv~i~~~~~v~~L~~~-~g~v~Gv~~~~~---~~g~~-------~~i~Ak~VVlAtGG~~~~ 193 (566)
T TIGR01812 130 ALLHTLYEQCLKLGVSFFNEYFALDLIHD-DGRVRGVVAYDL---KTGEI-------VFFRAKAVVLATGGYGRI 193 (566)
T ss_pred HHHHHHHHHHHHcCCEEEeccEEEEEEEe-CCEEEEEEEEEC---CCCcE-------EEEECCeEEECCCcccCC
Confidence 57788999999999999999999999986 799999877431 13322 369999999999998854
No 89
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=97.80 E-value=0.0001 Score=66.50 Aligned_cols=74 Identities=23% Similarity=0.192 Sum_probs=52.7
Q ss_pred HHHHHHHHHHH----HCCCEEecCCceeEEEEcCCCcEEEEEEccc--ccc--------CCCCCCCCCCcCeEEEcCEEE
Q psy9486 68 HVVKWLGEQAE----AMGVEIYPGIPASEVLYHGDGSVKGIATGDV--GIA--------KDGSPKDTFARGMELHAKVTI 133 (165)
Q Consensus 68 ~~d~~L~~~A~----~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~--g~~--------~~g~~~~~~~~g~~i~Ak~VI 133 (165)
.+.+.|.++++ +.||+|++++++++|+.+ +|+|+||.+... +.. .++.. ..|.||.||
T Consensus 149 ~~~~~l~~~~~~~~~~~gv~i~~~t~~~~Li~~-~g~V~Gv~~~~~~~~~~~~~~~~~~~~~~~-------~~i~AkaVI 220 (549)
T PRK12834 149 GVVEPFERRVREAAARGLVRFRFRHRVDELVVT-DGAVTGVRGTVLEPSDAERGEASSREVVGE-------FELRAQAVI 220 (549)
T ss_pred HHHHHHHHHHHHHHHhCCceEEecCEeeEEEEe-CCEEEEEEEEecccccccccccccccccce-------EEEecCEEE
Confidence 45667766664 236999999999999986 799999986310 000 00111 378999999
Q ss_pred EcccCCcccchHHHhhc
Q psy9486 134 FAEGCHGHLTKSLSSRF 150 (165)
Q Consensus 134 ~A~G~~s~l~~~l~~~~ 150 (165)
+|+|..+.+ .+|.++|
T Consensus 221 LATGGf~~n-~em~~~~ 236 (549)
T PRK12834 221 VTSGGIGGN-HELVRRN 236 (549)
T ss_pred EeCCCcccC-HHHHHHh
Confidence 999999988 6666665
No 90
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=97.79 E-value=0.00023 Score=61.05 Aligned_cols=72 Identities=25% Similarity=0.258 Sum_probs=57.7
Q ss_pred cEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCc
Q psy9486 61 NYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG 140 (165)
Q Consensus 61 ~~~i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s 140 (165)
...++-..+.+.|.+.+++.|++++++++|.++..+ ++.+ .|.+.+ + ++.|+.||+|+|.++
T Consensus 143 ~g~vd~~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~~-~~~~-~V~~~~---------------g-~i~ad~vV~A~G~~s 204 (393)
T PRK11728 143 TGIVDYRAVAEAMAELIQARGGEIRLGAEVTALDEH-ANGV-VVRTTQ---------------G-EYEARTLINCAGLMS 204 (393)
T ss_pred ceEECHHHHHHHHHHHHHhCCCEEEcCCEEEEEEec-CCeE-EEEECC---------------C-EEEeCEEEECCCcch
Confidence 346788899999999999999999999999999875 4443 577654 3 799999999999997
Q ss_pred ccchHHHhhcCCC
Q psy9486 141 HLTKSLSSRFNLR 153 (165)
Q Consensus 141 ~l~~~l~~~~gl~ 153 (165)
..+.+.+|+.
T Consensus 205 ---~~l~~~~g~~ 214 (393)
T PRK11728 205 ---DRLAKMAGLE 214 (393)
T ss_pred ---HHHHHHhCCC
Confidence 4555556654
No 91
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.79 E-value=9e-05 Score=67.41 Aligned_cols=66 Identities=21% Similarity=0.349 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHCCCEEecCCceeEEEEcCC---CcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486 67 GHVVKWLGEQAEAMGVEIYPGIPASEVLYHGD---GSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL 142 (165)
Q Consensus 67 ~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~---g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l 142 (165)
..+.+.|.+++++.||+|++++.|++|+.+++ |+|+||.+.+. ++|+. ..|+|+.||+|+|..+.+
T Consensus 140 ~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~---~~g~~-------~~i~AkaVVLATGG~~~~ 208 (583)
T PRK08205 140 HMILQTLYQNCVKHGVEFFNEFYVLDLLLTETPSGPVAAGVVAYEL---ATGEI-------HVFHAKAVVFATGGSGRV 208 (583)
T ss_pred HHHHHHHHHHHHhcCCEEEeCCEEEEEEecCCccCCcEEEEEEEEc---CCCeE-------EEEEeCeEEECCCCCccc
Confidence 46788999999999999999999999998643 89999977431 23322 368999999999998854
No 92
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.77 E-value=8.8e-05 Score=68.30 Aligned_cols=62 Identities=23% Similarity=0.345 Sum_probs=50.2
Q ss_pred HHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486 70 VKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL 142 (165)
Q Consensus 70 d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l 142 (165)
.+.|.+++++.||+|++++.|++|+.+ +++|+||.+.+. .+|.. ..|.||.||+|+|..+.+
T Consensus 173 ~~~L~~~~~~~gV~i~~~t~v~~Li~d-~g~V~GV~~~~~---~~g~~-------~~i~AkaVVLATGG~g~~ 234 (640)
T PRK07573 173 YQALSRQIAAGTVKMYTRTEMLDLVVV-DGRARGIVARNL---VTGEI-------ERHTADAVVLATGGYGNV 234 (640)
T ss_pred HHHHHHHHHhcCCEEEeceEEEEEEEe-CCEEEEEEEEEC---CCCcE-------EEEECCEEEECCCCcccC
Confidence 367778888999999999999999986 689999987641 13432 369999999999998864
No 93
>PRK05868 hypothetical protein; Validated
Probab=97.74 E-value=0.00016 Score=61.91 Aligned_cols=68 Identities=18% Similarity=0.123 Sum_probs=53.8
Q ss_pred cEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCc
Q psy9486 61 NYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG 140 (165)
Q Consensus 61 ~~~i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s 140 (165)
.+.+.|..|.+.|.+ +...|++++++++|+++..+ ++.| .|...+ |.+++||+||.|+|.+|
T Consensus 99 ~~~i~R~~L~~~l~~-~~~~~v~i~~~~~v~~i~~~-~~~v-~v~~~d---------------g~~~~adlvIgADG~~S 160 (372)
T PRK05868 99 DIELLRDDLVELLYG-ATQPSVEYLFDDSISTLQDD-GDSV-RVTFER---------------AAAREFDLVIGADGLHS 160 (372)
T ss_pred eEEEEHHHHHHHHHH-hccCCcEEEeCCEEEEEEec-CCeE-EEEECC---------------CCeEEeCEEEECCCCCc
Confidence 578899999997754 55679999999999999764 3433 355554 35799999999999999
Q ss_pred ccchHH
Q psy9486 141 HLTKSL 146 (165)
Q Consensus 141 ~l~~~l 146 (165)
.+.+.+
T Consensus 161 ~vR~~~ 166 (372)
T PRK05868 161 NVRRLV 166 (372)
T ss_pred hHHHHh
Confidence 997775
No 94
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=97.74 E-value=0.00017 Score=66.33 Aligned_cols=76 Identities=16% Similarity=0.152 Sum_probs=59.5
Q ss_pred EEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcC-CCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcc
Q psy9486 63 VVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHG-DGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH 141 (165)
Q Consensus 63 ~i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~-~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~ 141 (165)
.++-..+...|++.|++.|++|++.+.|.++..++ +++++||++.+. .+|+ ..+|+|+.||+|+|+|+
T Consensus 228 ~vdp~rl~~al~~~A~~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~---~tg~-------~~~i~a~~VVnAaGaws- 296 (627)
T PLN02464 228 QMNDSRLNVALACTAALAGAAVLNYAEVVSLIKDESTGRIVGARVRDN---LTGK-------EFDVYAKVVVNAAGPFC- 296 (627)
T ss_pred EEcHHHHHHHHHHHHHhCCcEEEeccEEEEEEEecCCCcEEEEEEEEC---CCCc-------EEEEEeCEEEECCCHhH-
Confidence 35778899999999999999999999999998864 478899887431 1221 12689999999999997
Q ss_pred cchHHHhhcC
Q psy9486 142 LTKSLSSRFN 151 (165)
Q Consensus 142 l~~~l~~~~g 151 (165)
.++.+..+
T Consensus 297 --~~l~~~~g 304 (627)
T PLN02464 297 --DEVRKMAD 304 (627)
T ss_pred --HHHHHhcc
Confidence 56665564
No 95
>PRK06753 hypothetical protein; Provisional
Probab=97.73 E-value=8.5e-05 Score=62.86 Aligned_cols=68 Identities=18% Similarity=0.235 Sum_probs=54.8
Q ss_pred CcEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCC
Q psy9486 60 GNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH 139 (165)
Q Consensus 60 ~~~~i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~ 139 (165)
.++.+.|..|.+.|.+.+.. ++|+++++|+++..+ ++.+ .|.+.+ |.+++|++||.|+|.+
T Consensus 91 ~~~~i~R~~l~~~L~~~~~~--~~i~~~~~v~~i~~~-~~~v-~v~~~~---------------g~~~~~~~vigadG~~ 151 (373)
T PRK06753 91 LNVTLHRQTLIDIIKSYVKE--DAIFTGKEVTKIENE-TDKV-TIHFAD---------------GESEAFDLCIGADGIH 151 (373)
T ss_pred ccccccHHHHHHHHHHhCCC--ceEEECCEEEEEEec-CCcE-EEEECC---------------CCEEecCEEEECCCcc
Confidence 46899999999999988764 689999999999865 4443 355543 3579999999999999
Q ss_pred cccchHH
Q psy9486 140 GHLTKSL 146 (165)
Q Consensus 140 s~l~~~l 146 (165)
|.+.+.+
T Consensus 152 S~vR~~~ 158 (373)
T PRK06753 152 SKVRQSV 158 (373)
T ss_pred hHHHHHh
Confidence 9997774
No 96
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=97.72 E-value=0.00021 Score=60.86 Aligned_cols=64 Identities=16% Similarity=0.061 Sum_probs=51.4
Q ss_pred EEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcc
Q psy9486 62 YVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH 141 (165)
Q Consensus 62 ~~i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~ 141 (165)
+.++|..|++.|.++|.+.|++++ ..+|.++..+ ++..+.|.+.+ |.+++|+.||+|+|.+|.
T Consensus 80 ~~i~~~~l~~~l~~~~~~~gv~~~-~~~v~~i~~~-~~~~~~v~~~~---------------g~~~~a~~VI~A~G~~s~ 142 (388)
T TIGR01790 80 GSVDSTRLHEELLQKCPEGGVLWL-ERKAIHAEAD-GVALSTVYCAG---------------GQRIQARLVIDARGFGPL 142 (388)
T ss_pred eEEcHHHHHHHHHHHHHhcCcEEE-ccEEEEEEec-CCceeEEEeCC---------------CCEEEeCEEEECCCCchh
Confidence 469999999999999999999997 4578888764 34445566654 357999999999999984
Q ss_pred c
Q psy9486 142 L 142 (165)
Q Consensus 142 l 142 (165)
+
T Consensus 143 ~ 143 (388)
T TIGR01790 143 V 143 (388)
T ss_pred c
Confidence 4
No 97
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=97.71 E-value=0.00024 Score=62.66 Aligned_cols=77 Identities=29% Similarity=0.340 Sum_probs=63.9
Q ss_pred CCcEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeE-EEcCEEEEccc
Q psy9486 59 HGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGME-LHAKVTIFAEG 137 (165)
Q Consensus 59 ~~~~~i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~-i~Ak~VI~A~G 137 (165)
+.+.+|+=..+...|++.|++.|++++++++|++|..+.|| ++-+.+.+ |.+ ++||.||.|.|
T Consensus 145 p~~giV~~~~~t~~l~e~a~~~g~~i~ln~eV~~i~~~~dg-~~~~~~~~---------------g~~~~~ak~Vin~AG 208 (429)
T COG0579 145 PSGGIVDPGELTRALAEEAQANGVELRLNTEVTGIEKQSDG-VFVLNTSN---------------GEETLEAKFVINAAG 208 (429)
T ss_pred CCCceEcHHHHHHHHHHHHHHcCCEEEecCeeeEEEEeCCc-eEEEEecC---------------CcEEEEeeEEEECCc
Confidence 44678998999999999999999999999999999987554 45455554 334 99999999999
Q ss_pred CCcccchHHHhhcCCCC
Q psy9486 138 CHGHLTKSLSSRFNLRG 154 (165)
Q Consensus 138 ~~s~l~~~l~~~~gl~~ 154 (165)
..+ ..|.++.|+..
T Consensus 209 l~A---d~la~~~g~~~ 222 (429)
T COG0579 209 LYA---DPLAQMAGIPE 222 (429)
T ss_pred hhH---HHHHHHhCCCc
Confidence 886 78888888875
No 98
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=97.71 E-value=0.00014 Score=66.57 Aligned_cols=65 Identities=20% Similarity=0.265 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHH----CCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486 68 HVVKWLGEQAEA----MGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL 142 (165)
Q Consensus 68 ~~d~~L~~~A~~----~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l 142 (165)
.+...|.+.+++ .||+|++++.|++|+.+++|+|+||.+.+. .+|.. ..|.||.||+|+|..+.+
T Consensus 130 ~i~~~L~~~~~~~~~~~gV~i~~~t~v~~Li~dd~grV~GV~~~~~---~~g~~-------~~i~AkaVVLATGG~g~~ 198 (603)
T TIGR01811 130 QLLLALDSALRRQIAAGLVEKYEGWEMLDIIVVDGNRARGIIARNL---VTGEI-------ETHSADAVILATGGYGNV 198 (603)
T ss_pred HHHHHHHHHHHhhhccCCcEEEeCcEEEEEEEcCCCEEEEEEEEEC---CCCcE-------EEEEcCEEEECCCCCcCc
Confidence 455556665544 389999999999999865679999987641 13432 368999999999998754
No 99
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=97.71 E-value=0.00012 Score=67.61 Aligned_cols=64 Identities=19% Similarity=0.205 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486 68 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL 142 (165)
Q Consensus 68 ~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l 142 (165)
.+...|.+++++.||+|++++.|.+|+.+ +|+|+||.+.+. .+|+. ..|.||.||+|+|..+.+
T Consensus 159 ~l~~~L~~~~~~~gv~i~~~~~~~~Li~~-~g~v~Gv~~~~~---~~G~~-------~~i~AkaVVLATGG~g~~ 222 (657)
T PRK08626 159 TMLYAVDNEAIKLGVPVHDRKEAIALIHD-GKRCYGAVVRCL---ITGEL-------RAYVAKATLIATGGYGRI 222 (657)
T ss_pred HHHHHHHHHHHhCCCEEEeeEEEEEEEEE-CCEEEEEEEEEc---CCCcE-------EEEEcCeEEECCCcccCC
Confidence 46667899999999999999999999986 789999887541 24433 368899999999998865
No 100
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.70 E-value=0.00013 Score=65.80 Aligned_cols=66 Identities=24% Similarity=0.279 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486 67 GHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL 142 (165)
Q Consensus 67 ~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l 142 (165)
..+...|.+++++.||+|++++.|++|+.+++++|+||...+. .+|+. ..|+||.||+|+|..+.+
T Consensus 134 ~~i~~~L~~~~~~~gv~i~~~t~v~~Li~~~~~~v~Gv~~~~~---~~g~~-------~~i~AkaVIlATGG~~~~ 199 (543)
T PRK06263 134 HEMMMGLMEYLIKERIKILEEVMAIKLIVDENREVIGAIFLDL---RNGEI-------FPIYAKATILATGGAGQL 199 (543)
T ss_pred HHHHHHHHHHHhcCCCEEEeCeEeeeeEEeCCcEEEEEEEEEC---CCCcE-------EEEEcCcEEECCCCCCCC
Confidence 4567788999999999999999999999874445999876431 23432 369999999999998754
No 101
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=97.70 E-value=0.0004 Score=61.98 Aligned_cols=81 Identities=17% Similarity=0.190 Sum_probs=60.4
Q ss_pred CCcEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccC
Q psy9486 59 HGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGC 138 (165)
Q Consensus 59 ~~~~~i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~ 138 (165)
+.+..++-..+.+.|.+.|++.|++|+++++|+++..++++.+ .|.+.+. .+|+ +.+++|+.||+|+|.
T Consensus 170 p~~g~Vdp~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~~~v-~v~~~~~---~~g~-------~~~i~A~~VV~AAG~ 238 (483)
T TIGR01320 170 AEGTDVDFGALTKQLLGYLVQNGTTIRFGHEVRNLKRQSDGSW-TVTVKNT---RTGG-------KRTLNTRFVFVGAGG 238 (483)
T ss_pred CCCEEECHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCeE-EEEEeec---cCCc-------eEEEECCEEEECCCc
Confidence 3456788999999999999999999999999999987534433 2433210 1121 136999999999999
Q ss_pred CcccchHHHhhcCCC
Q psy9486 139 HGHLTKSLSSRFNLR 153 (165)
Q Consensus 139 ~s~l~~~l~~~~gl~ 153 (165)
|+ ..+.+++|+.
T Consensus 239 ~s---~~La~~~Gi~ 250 (483)
T TIGR01320 239 GA---LPLLQKSGIP 250 (483)
T ss_pred ch---HHHHHHcCCC
Confidence 97 6677778875
No 102
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=97.67 E-value=0.00015 Score=64.28 Aligned_cols=60 Identities=18% Similarity=0.272 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486 67 GHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL 142 (165)
Q Consensus 67 ~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l 142 (165)
..+.+.|.+.+++.|++|+++++|++|..+ ++++.||++.+ |.++.|+.||.|.|.+..+
T Consensus 229 ~~l~~~L~~~~~~~G~~i~~~~~V~~I~~~-~~~~~gv~~~~---------------g~~~~ad~vV~a~~~~~~~ 288 (493)
T TIGR02730 229 GQIAESLVKGLEKHGGQIRYRARVTKIILE-NGKAVGVKLAD---------------GEKIYAKRIVSNATRWDTF 288 (493)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCeeeEEEec-CCcEEEEEeCC---------------CCEEEcCEEEECCChHHHH
Confidence 468888999999999999999999999986 68899999875 4579999999999988655
No 103
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.66 E-value=0.00019 Score=65.13 Aligned_cols=65 Identities=25% Similarity=0.372 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486 67 GHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL 142 (165)
Q Consensus 67 ~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l 142 (165)
..+.+.|.+++++.||+|++++.|++|+.+ +|+|+||...+. .+|+. ..+.|+.||+|+|..+.+
T Consensus 135 ~~i~~~L~~~~~~~gi~i~~~t~v~~L~~~-~g~v~Gv~~~~~---~~g~~-------~~i~AkaVVlATGG~~~~ 199 (575)
T PRK05945 135 HAILHELVNNLRRYGVTIYDEWYVMRLILE-DNQAKGVVMYHI---ADGRL-------EVVRAKAVMFATGGYGRV 199 (575)
T ss_pred HHHHHHHHHHHhhCCCEEEeCcEEEEEEEE-CCEEEEEEEEEc---CCCeE-------EEEECCEEEECCCCCcCC
Confidence 467788999999999999999999999986 789999875321 13322 368999999999998854
No 104
>PLN02463 lycopene beta cyclase
Probab=97.65 E-value=0.00029 Score=62.38 Aligned_cols=64 Identities=19% Similarity=0.200 Sum_probs=52.7
Q ss_pred EEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcc
Q psy9486 62 YVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH 141 (165)
Q Consensus 62 ~~i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~ 141 (165)
..++|..|+++|.+++.+.||+++ ..+|++|..+ ++. +.|.+.+ |..++|++||+|+|.+|.
T Consensus 109 ~~V~R~~L~~~Ll~~~~~~GV~~~-~~~V~~I~~~-~~~-~~V~~~d---------------G~~i~A~lVI~AdG~~s~ 170 (447)
T PLN02463 109 GRVNRKKLKSKMLERCIANGVQFH-QAKVKKVVHE-ESK-SLVVCDD---------------GVKIQASLVLDATGFSRC 170 (447)
T ss_pred eeEEHHHHHHHHHHHHhhcCCEEE-eeEEEEEEEc-CCe-EEEEECC---------------CCEEEcCEEEECcCCCcC
Confidence 358999999999999999999997 4689998775 333 4577765 458999999999999987
Q ss_pred cc
Q psy9486 142 LT 143 (165)
Q Consensus 142 l~ 143 (165)
+.
T Consensus 171 l~ 172 (447)
T PLN02463 171 LV 172 (447)
T ss_pred cc
Confidence 64
No 105
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=97.64 E-value=0.00022 Score=62.53 Aligned_cols=71 Identities=24% Similarity=0.284 Sum_probs=48.3
Q ss_pred hHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcccc--
Q psy9486 66 LGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLT-- 143 (165)
Q Consensus 66 r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l~-- 143 (165)
...+-.+|.++++++||+|+++++|.+|..+ ++.+..|++.+ +..+.||.||+|+|..|.-.
T Consensus 108 a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~-~~~~f~v~~~~---------------~~~~~a~~vILAtGG~S~p~~G 171 (409)
T PF03486_consen 108 ASSVVDALLEELKRLGVEIHFNTRVKSIEKK-EDGVFGVKTKN---------------GGEYEADAVILATGGKSYPKTG 171 (409)
T ss_dssp HHHHHHHHHHHHHHHT-EEE-S--EEEEEEE-TTEEEEEEETT---------------TEEEEESEEEE----SSSGGGT
T ss_pred HHHHHHHHHHHHHHcCCEEEeCCEeeeeeec-CCceeEeeccC---------------cccccCCEEEEecCCCCccccC
Confidence 4567789999999999999999999999986 57778899943 35899999999999776321
Q ss_pred -----hHHHhhcCC
Q psy9486 144 -----KSLSSRFNL 152 (165)
Q Consensus 144 -----~~l~~~~gl 152 (165)
-++.+++|.
T Consensus 172 S~G~gy~~a~~lGh 185 (409)
T PF03486_consen 172 SDGSGYRIAKKLGH 185 (409)
T ss_dssp -SSHHHHHHHHTT-
T ss_pred CCcHHHHHHHHCCC
Confidence 345555664
No 106
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=97.64 E-value=0.0003 Score=63.83 Aligned_cols=66 Identities=27% Similarity=0.371 Sum_probs=53.1
Q ss_pred EhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEc-CEEEEcccCCcccc
Q psy9486 65 RLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHA-KVTIFAEGCHGHLT 143 (165)
Q Consensus 65 ~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~A-k~VI~A~G~~s~l~ 143 (165)
.-..+...|.+++++.|++|++++.|++|+.+ +++|+||++.+ .++. ..+.| +.||+|+|.++...
T Consensus 212 ~G~~l~~~L~~~~~~~Gv~i~~~~~v~~l~~~-~g~V~GV~~~~----~~~~--------~~i~a~k~VVlAtGg~~~n~ 278 (574)
T PRK12842 212 SGNALAARLAKSALDLGIPILTGTPARELLTE-GGRVVGARVID----AGGE--------RRITARRGVVLACGGFSHDL 278 (574)
T ss_pred cHHHHHHHHHHHHHhCCCEEEeCCEEEEEEee-CCEEEEEEEEc----CCce--------EEEEeCCEEEEcCCCccchH
Confidence 44567888999999999999999999999986 78999998864 1221 25788 58999999998663
No 107
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=97.64 E-value=0.00022 Score=69.79 Aligned_cols=77 Identities=19% Similarity=0.247 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHH---CCCEEecCCceeEEEEcCC--------CcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEc
Q psy9486 67 GHVVKWLGEQAEA---MGVEIYPGIPASEVLYHGD--------GSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFA 135 (165)
Q Consensus 67 ~~~d~~L~~~A~~---~Gv~i~~~~~v~~i~~~~~--------g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A 135 (165)
..+.+.|.+.+++ .||+|+++++|++|+.+++ ++|+||.+.+.+ +.+|+. ..|.||.||+|
T Consensus 544 ~~i~~~l~~~~~~~~~~gv~i~~~t~~~~LI~d~~~~~~G~~~~~V~Gv~~~~~~-~~~g~~-------~~i~AkaVILA 615 (1167)
T PTZ00306 544 FTIMRTLEDHIRTKLSGRVTIMTETTVTSLLSESSARPDGVREIRVTGVRYKQAS-DASGQV-------MDLLADAVILA 615 (1167)
T ss_pred HHHHHHHHHHHHhhccCCcEEEECCEEEEEEecCCcccCCCccceEEEEEEEecc-cCCCcE-------EEEEeceEEEe
Confidence 4466677777775 4999999999999998632 389999887510 114543 37999999999
Q ss_pred ccCCcccch--HHHhhcC
Q psy9486 136 EGCHGHLTK--SLSSRFN 151 (165)
Q Consensus 136 ~G~~s~l~~--~l~~~~g 151 (165)
+|..+.... +|.++|.
T Consensus 616 TGGf~~N~e~~~m~~~y~ 633 (1167)
T PTZ00306 616 TGGFSNDHTPNSLLREYA 633 (1167)
T ss_pred cCCcccCccHHHHHHHhC
Confidence 999987743 6777764
No 108
>PRK07804 L-aspartate oxidase; Provisional
Probab=97.62 E-value=0.00023 Score=64.26 Aligned_cols=68 Identities=28% Similarity=0.388 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccc-cCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486 67 GHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGI-AKDGSPKDTFARGMELHAKVTIFAEGCHGHL 142 (165)
Q Consensus 67 ~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~-~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l 142 (165)
..+.+.|.+++++.||+|++++.|.+++.+++|+|+||.+.+..- ..++ . ..+.|+.||+|+|..+.+
T Consensus 144 ~~i~~~L~~~~~~~gV~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~~~~~g-~-------~~i~Ak~VIlATGG~~~~ 212 (541)
T PRK07804 144 AEVQRALDAAVRADPLDIREHALALDLLTDGTGAVAGVTLHVLGEGSPDG-V-------GAVHAPAVVLATGGLGQL 212 (541)
T ss_pred HHHHHHHHHHHHhCCCEEEECeEeeeeEEcCCCeEEEEEEEeccCCCCCc-E-------EEEEcCeEEECCCCCCCC
Confidence 467788999999999999999999999986457999997752100 0111 1 368999999999998854
No 109
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=97.59 E-value=0.00054 Score=62.04 Aligned_cols=70 Identities=21% Similarity=0.427 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcC-EEEEcccCCcccchHH
Q psy9486 68 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAK-VTIFAEGCHGHLTKSL 146 (165)
Q Consensus 68 ~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak-~VI~A~G~~s~l~~~l 146 (165)
.+...|.+.+++.||+|+++++|++|+.+ +++|+||.+.. +|+. ..|+|+ .||+|+|..... +.|
T Consensus 209 ~~~~~L~~~~~~~gv~v~~~t~v~~l~~~-~g~v~Gv~~~~-----~g~~-------~~i~A~~~VIlAtGG~~~n-~~m 274 (557)
T PRK07843 209 ALAAGLRIGLQRAGVPVLLNTPLTDLYVE-DGRVTGVHAAE-----SGEP-------QLIRARRGVILASGGFEHN-EQM 274 (557)
T ss_pred HHHHHHHHHHHcCCCEEEeCCEEEEEEEe-CCEEEEEEEEe-----CCcE-------EEEEeceeEEEccCCcCcC-HHH
Confidence 35667778888999999999999999986 68999998753 2322 368996 699999988876 566
Q ss_pred HhhcC
Q psy9486 147 SSRFN 151 (165)
Q Consensus 147 ~~~~g 151 (165)
.+.|.
T Consensus 275 ~~~~~ 279 (557)
T PRK07843 275 RAKYQ 279 (557)
T ss_pred HHHhc
Confidence 66664
No 110
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=97.58 E-value=0.0008 Score=57.96 Aligned_cols=97 Identities=18% Similarity=0.124 Sum_probs=62.0
Q ss_pred ceEEEEcCCceEEecCCCCCCCCCCCcEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCC
Q psy9486 35 DKFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKD 114 (165)
Q Consensus 35 ~~~~~~~~~~~l~i~~~~~~~~~~~~~~~i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~ 114 (165)
+.+.+........+++.... .........+..+.+.|.+++.+.|++++++.++..+.-. ++..++|.... +
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~~v~~~~~-~~~~~~V~~~~-----~ 144 (390)
T TIGR02360 73 EGTEIAFDGQRFRIDLKALT--GGKTVMVYGQTEVTRDLMEAREAAGLTTVYDADDVRLHDL-AGDRPYVTFER-----D 144 (390)
T ss_pred cceEEeeCCEEEEEeccccC--CCceEEEeCHHHHHHHHHHHHHhcCCeEEEeeeeEEEEec-CCCccEEEEEE-----C
Confidence 34444444445556654221 1111123457788999999999999999999888777542 22223455531 2
Q ss_pred CCCCCCCCcCeEEEcCEEEEcccCCcccchHH
Q psy9486 115 GSPKDTFARGMELHAKVTIFAEGCHGHLTKSL 146 (165)
Q Consensus 115 g~~~~~~~~g~~i~Ak~VI~A~G~~s~l~~~l 146 (165)
|+. .+++||+||.|+|.+|.+.+++
T Consensus 145 g~~-------~~i~adlvIGADG~~S~VR~~l 169 (390)
T TIGR02360 145 GER-------HRLDCDFIAGCDGFHGVSRASI 169 (390)
T ss_pred CeE-------EEEEeCEEEECCCCchhhHHhc
Confidence 211 3699999999999999997763
No 111
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=97.56 E-value=0.00035 Score=64.00 Aligned_cols=65 Identities=17% Similarity=0.150 Sum_probs=51.1
Q ss_pred hHHHHHHHHHHHHHCC-CEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcc
Q psy9486 66 LGHVVKWLGEQAEAMG-VEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH 141 (165)
Q Consensus 66 r~~~d~~L~~~A~~~G-v~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~ 141 (165)
...+.+.|.+.|++.| |+|++++.|.+|+.+ +++|+||...+. .+|+. ..+.|+.||+|+|.++.
T Consensus 131 G~~~~~~L~~~a~~~ggV~i~~~~~v~~Li~~-~g~v~Gv~~~~~---~~g~~-------~~i~AkaVILATGG~~~ 196 (608)
T PRK06854 131 GESYKPIVAEAAKKALGDNVLNRVFITDLLVD-DNRIAGAVGFSV---RENKF-------YVFKAKAVIVATGGAAG 196 (608)
T ss_pred hHHHHHHHHHHHHhcCCCEEEeCCEEEEEEEe-CCEEEEEEEEEc---cCCcE-------EEEECCEEEECCCchhh
Confidence 4467888999998876 999999999999886 689999865321 12322 36999999999998874
No 112
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=97.56 E-value=0.00019 Score=61.24 Aligned_cols=61 Identities=11% Similarity=0.112 Sum_probs=50.9
Q ss_pred EEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcc
Q psy9486 63 VVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH 141 (165)
Q Consensus 63 ~i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~ 141 (165)
.++-..+...|++.|++ |++|++++.|.++..+ +++ ++|++.+ |..+.|+.||+|+|.|+.
T Consensus 131 ~idp~~~~~~l~~~~~~-G~~i~~~~~V~~i~~~-~~~-~~v~t~~---------------g~~~~a~~vV~a~G~~~~ 191 (381)
T TIGR03197 131 WLSPPQLCRALLAHAGI-RLTLHFNTEITSLERD-GEG-WQLLDAN---------------GEVIAASVVVLANGAQAG 191 (381)
T ss_pred ccChHHHHHHHHhccCC-CcEEEeCCEEEEEEEc-CCe-EEEEeCC---------------CCEEEcCEEEEcCCcccc
Confidence 56778899999999999 9999999999999875 444 5677764 345899999999999984
No 113
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=97.56 E-value=0.00072 Score=58.16 Aligned_cols=75 Identities=15% Similarity=0.226 Sum_probs=52.6
Q ss_pred EEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcccc
Q psy9486 64 VRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLT 143 (165)
Q Consensus 64 i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l~ 143 (165)
++-..+...|.+.|++.|++|+++++|.++..+ ++.++ |.+.+ .++.+ +.+++|+.||+|+|+|+
T Consensus 194 ~~~~~~~~~l~~~a~~~G~~i~~~~~V~~i~~~-~~~~~-v~~~~----~~~~~------~~~i~a~~vV~a~G~~s--- 258 (410)
T PRK12409 194 GDIHKFTTGLAAACARLGVQFRYGQEVTSIKTD-GGGVV-LTVQP----SAEHP------SRTLEFDGVVVCAGVGS--- 258 (410)
T ss_pred cCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEe-CCEEE-EEEEc----CCCCc------cceEecCEEEECCCcCh---
Confidence 455578889999999999999999999999875 45443 44432 01100 13799999999999997
Q ss_pred hHHHhhcCCC
Q psy9486 144 KSLSSRFNLR 153 (165)
Q Consensus 144 ~~l~~~~gl~ 153 (165)
.++.+.++..
T Consensus 259 ~~l~~~~~~~ 268 (410)
T PRK12409 259 RALAAMLGDR 268 (410)
T ss_pred HHHHHHhCCC
Confidence 4444445543
No 114
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=97.56 E-value=0.00037 Score=61.35 Aligned_cols=61 Identities=26% Similarity=0.287 Sum_probs=50.6
Q ss_pred cEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCc
Q psy9486 61 NYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG 140 (165)
Q Consensus 61 ~~~i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s 140 (165)
+..++-.++.+.|++.|++.||+|+++++|+++.. +..+.|++.+ | +++|+.||+|+|+|+
T Consensus 177 ~g~i~P~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~---~~~~~v~t~~---------------g-~v~A~~VV~Atga~s 237 (460)
T TIGR03329 177 AASVQPGLLVRGLRRVALELGVEIHENTPMTGLEE---GQPAVVRTPD---------------G-QVTADKVVLALNAWM 237 (460)
T ss_pred CeEECHHHHHHHHHHHHHHcCCEEECCCeEEEEee---CCceEEEeCC---------------c-EEECCEEEEcccccc
Confidence 34667889999999999999999999999999864 2334677754 3 799999999999996
No 115
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.55 E-value=0.00034 Score=63.78 Aligned_cols=66 Identities=23% Similarity=0.288 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHCC----CEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486 67 GHVVKWLGEQAEAMG----VEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL 142 (165)
Q Consensus 67 ~~~d~~L~~~A~~~G----v~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l 142 (165)
..+.+.|.+++++.+ +++++++.+.+++.+++|+|+||.+.+. .+|+. ..+.|+.||+|||..+.+
T Consensus 133 ~~i~~~L~~~~~~~~~~~~i~i~~~~~~~~Li~~~~g~v~Gv~~~~~---~~g~~-------~~i~AkaVILATGG~~~~ 202 (589)
T PRK08641 133 QQLLYALDEQVRRYEVAGLVTKYEGWEFLGAVLDDEGVCRGIVAQDL---FTMEI-------ESFPADAVIMATGGPGII 202 (589)
T ss_pred HHHHHHHHHHHHhhhccCCcEEEeeEEEEEEEECCCCEEEEEEEEEC---CCCcE-------EEEECCEEEECCCCCcCC
Confidence 457778888887654 8899999999999865789999988641 12322 368999999999999864
No 116
>PRK06175 L-aspartate oxidase; Provisional
Probab=97.54 E-value=0.00032 Score=61.55 Aligned_cols=63 Identities=24% Similarity=0.296 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHH-CCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486 67 GHVVKWLGEQAEA-MGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL 142 (165)
Q Consensus 67 ~~~d~~L~~~A~~-~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l 142 (165)
..+.+.|.+++++ .||+|+++++|.+|+.+ +++|+||.... +|.. ..|.||.||+|+|..+.+
T Consensus 128 ~~l~~~L~~~~~~~~gV~i~~~t~v~~Li~~-~~~v~Gv~~~~-----~g~~-------~~i~Ak~VILAtGG~~~l 191 (433)
T PRK06175 128 KKVEKILLKKVKKRKNITIIENCYLVDIIEN-DNTCIGAICLK-----DNKQ-------INIYSKVTILATGGIGGL 191 (433)
T ss_pred HHHHHHHHHHHHhcCCCEEEECcEeeeeEec-CCEEEEEEEEE-----CCcE-------EEEEcCeEEEccCccccc
Confidence 3566778888875 59999999999999885 68999986543 2211 369999999999987653
No 117
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=97.53 E-value=0.00046 Score=61.13 Aligned_cols=74 Identities=26% Similarity=0.328 Sum_probs=61.7
Q ss_pred EhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcccc-
Q psy9486 65 RLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLT- 143 (165)
Q Consensus 65 ~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l~- 143 (165)
...+..+-+.+..+++|++|++.|.|.++.++ ++.+.+|.+.+ |.+|.|+.||+|-|..+.-.
T Consensus 171 ~l~~vvkni~~~l~~~G~ei~f~t~VeDi~~~-~~~~~~v~~~~---------------g~~i~~~~vvlA~Grsg~dw~ 234 (486)
T COG2509 171 ILPKVVKNIREYLESLGGEIRFNTEVEDIEIE-DNEVLGVKLTK---------------GEEIEADYVVLAPGRSGRDWF 234 (486)
T ss_pred chHHHHHHHHHHHHhcCcEEEeeeEEEEEEec-CCceEEEEccC---------------CcEEecCEEEEccCcchHHHH
Confidence 34567788899999999999999999999996 67788998886 56999999999999988543
Q ss_pred hHHHhhcCCCC
Q psy9486 144 KSLSSRFNLRG 154 (165)
Q Consensus 144 ~~l~~~~gl~~ 154 (165)
..|.+++|+.-
T Consensus 235 ~~l~~K~Gv~~ 245 (486)
T COG2509 235 EMLHKKLGVKM 245 (486)
T ss_pred HHHHHhcCccc
Confidence 56667778754
No 118
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=97.49 E-value=0.00036 Score=61.99 Aligned_cols=63 Identities=25% Similarity=0.334 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHH-CCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486 67 GHVVKWLGEQAEA-MGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL 142 (165)
Q Consensus 67 ~~~d~~L~~~A~~-~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l 142 (165)
..+.+.|.+++++ .||+|++++.|++|+.+ +++|+||.+.+ . +.. ..++|+.||+|+|.++.+
T Consensus 128 ~~l~~~L~~~~~~~~gi~i~~~~~v~~l~~~-~g~v~Gv~~~~----~-~~~-------~~i~A~~VVlAtGG~~~~ 191 (488)
T TIGR00551 128 REVITTLVKKALNHPNIRIIEGENALDLLIE-TGRVVGVWVWN----R-ETV-------ETCHADAVVLATGGAGKL 191 (488)
T ss_pred HHHHHHHHHHHHhcCCcEEEECeEeeeeecc-CCEEEEEEEEE----C-CcE-------EEEEcCEEEECCCcccCC
Confidence 4678899999998 79999999999999885 68999998765 1 211 368999999999999865
No 119
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=97.48 E-value=0.001 Score=59.63 Aligned_cols=81 Identities=20% Similarity=0.258 Sum_probs=60.0
Q ss_pred CCcEEEEhHHHHHHHHHHHHHCC-CEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEccc
Q psy9486 59 HGNYVVRLGHVVKWLGEQAEAMG-VEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEG 137 (165)
Q Consensus 59 ~~~~~i~r~~~d~~L~~~A~~~G-v~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G 137 (165)
+.++.++=..+.+.|.+.|++.| |+|+++++|+++..++++.+. |.+.+. .+|. ...++|+.||+|+|
T Consensus 175 p~~g~Vd~~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~dg~~~-v~~~~~---~~G~-------~~~i~A~~VVvaAG 243 (494)
T PRK05257 175 EIGTDVNFGALTRQLVGYLQKQGNFELQLGHEVRDIKRNDDGSWT-VTVKDL---KTGE-------KRTVRAKFVFIGAG 243 (494)
T ss_pred CCceEECHHHHHHHHHHHHHhCCCeEEEeCCEEEEEEECCCCCEE-EEEEEc---CCCc-------eEEEEcCEEEECCC
Confidence 34668888899999999999987 899999999999875455433 443210 0121 12699999999999
Q ss_pred CCcccchHHHhhcCCC
Q psy9486 138 CHGHLTKSLSSRFNLR 153 (165)
Q Consensus 138 ~~s~l~~~l~~~~gl~ 153 (165)
.|+ ..+.+++|+.
T Consensus 244 g~s---~~L~~~~Gi~ 256 (494)
T PRK05257 244 GGA---LPLLQKSGIP 256 (494)
T ss_pred cch---HHHHHHcCCC
Confidence 997 6677777775
No 120
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.47 E-value=0.00057 Score=60.98 Aligned_cols=74 Identities=19% Similarity=0.163 Sum_probs=56.4
Q ss_pred EEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486 63 VVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL 142 (165)
Q Consensus 63 ~i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l 142 (165)
.++-..+..+|+..|++.|+++++.++|.++..+ +..++|.+.+ ..|+. .+|+|+.||.|+|+|+
T Consensus 151 ~vd~~rl~~~l~~~a~~~Ga~i~~~~~V~~i~~~--~~~~~v~~~~----~~g~~-------~~i~a~~VVnAaG~wa-- 215 (502)
T PRK13369 151 WVDDARLVVLNALDAAERGATILTRTRCVSARRE--GGLWRVETRD----ADGET-------RTVRARALVNAAGPWV-- 215 (502)
T ss_pred eecHHHHHHHHHHHHHHCCCEEecCcEEEEEEEc--CCEEEEEEEe----CCCCE-------EEEEecEEEECCCccH--
Confidence 3677889999999999999999999999999875 3345677654 11221 3699999999999997
Q ss_pred chHHHhhc-CC
Q psy9486 143 TKSLSSRF-NL 152 (165)
Q Consensus 143 ~~~l~~~~-gl 152 (165)
.++.+++ |.
T Consensus 216 -~~l~~~~~g~ 225 (502)
T PRK13369 216 -TDVIHRVAGS 225 (502)
T ss_pred -HHHHhhccCC
Confidence 5555533 54
No 121
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=97.46 E-value=0.00067 Score=52.32 Aligned_cols=61 Identities=30% Similarity=0.372 Sum_probs=46.5
Q ss_pred EEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCc
Q psy9486 63 VVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG 140 (165)
Q Consensus 63 ~i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s 140 (165)
..++.++.++|.+.|++.|+++.++++|+++.+++++ .-|.+.+ +.+++|+.||+|+|..+
T Consensus 78 ~~~~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~--w~v~~~~---------------~~~~~a~~VVlAtG~~~ 138 (203)
T PF13738_consen 78 FPSGEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDG--WTVTTRD---------------GRTIRADRVVLATGHYS 138 (203)
T ss_dssp SEBHHHHHHHHHHHHHHTTGGEETS--EEEEEEETTT--EEEEETT---------------S-EEEEEEEEE---SSC
T ss_pred cCCHHHHHHHHHHHHhhcCcccccCCEEEEEEEeccE--EEEEEEe---------------cceeeeeeEEEeeeccC
Confidence 3888999999999999999999999999999997444 4577765 34899999999999754
No 122
>PRK08401 L-aspartate oxidase; Provisional
Probab=97.46 E-value=0.00053 Score=60.65 Aligned_cols=58 Identities=28% Similarity=0.392 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486 67 GHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL 142 (165)
Q Consensus 67 ~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l 142 (165)
..+.+.|.+.+++.||+++.. .+.+++.+ +++|+||.+.. ..+.|+.||+|+|.++.+
T Consensus 120 ~~i~~~L~~~~~~~gv~i~~~-~v~~l~~~-~g~v~Gv~~~g----------------~~i~a~~VVLATGG~~~~ 177 (466)
T PRK08401 120 KHIIKILYKHARELGVNFIRG-FAEELAIK-NGKAYGVFLDG----------------ELLKFDATVIATGGFSGL 177 (466)
T ss_pred HHHHHHHHHHHHhcCCEEEEe-EeEEEEee-CCEEEEEEECC----------------EEEEeCeEEECCCcCcCC
Confidence 468889999999999999976 79998875 68999988742 479999999999999976
No 123
>PRK08071 L-aspartate oxidase; Provisional
Probab=97.46 E-value=0.00034 Score=62.71 Aligned_cols=63 Identities=19% Similarity=0.273 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486 67 GHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL 142 (165)
Q Consensus 67 ~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l 142 (165)
..+.+.|.++++ .||+|++++.|.+++.+ +++|+||.+.+ .+|+. ..++|+.||+|+|..+.+
T Consensus 130 ~~i~~~L~~~~~-~gV~i~~~~~v~~Li~~-~g~v~Gv~~~~----~~g~~-------~~i~Ak~VVlATGG~~~~ 192 (510)
T PRK08071 130 KNLLEHLLQELV-PHVTVVEQEMVIDLIIE-NGRCIGVLTKD----SEGKL-------KRYYADYVVLASGGCGGL 192 (510)
T ss_pred HHHHHHHHHHHh-cCCEEEECeEhhheeec-CCEEEEEEEEE----CCCcE-------EEEEcCeEEEecCCCccc
Confidence 346677777776 69999999999999885 78999998765 23432 368999999999998854
No 124
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=97.44 E-value=0.00055 Score=62.39 Aligned_cols=65 Identities=20% Similarity=0.308 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHH-CCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486 67 GHVVKWLGEQAEA-MGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL 142 (165)
Q Consensus 67 ~~~d~~L~~~A~~-~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l 142 (165)
..+.+.|.+++++ .|+++++++.+.+|+.+ +++|+||...+. .+|.. ..|.|+.||+|+|..+.+
T Consensus 132 ~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~-~g~v~Gv~~~~~---~~g~~-------~~i~AkaVILATGG~~~~ 197 (580)
T TIGR01176 132 FHMLHTLFQTSLTYPQIMRYDEWFVTDLLVD-DGRVCGLVAIEM---AEGRL-------VTILADAVVLATGGAGRV 197 (580)
T ss_pred HHHHHHHHHHHHhcCCCEEEeCeEEEEEEee-CCEEEEEEEEEc---CCCcE-------EEEecCEEEEcCCCCccc
Confidence 4678889998887 48999999999999986 789999976431 23432 479999999999999865
No 125
>PRK07512 L-aspartate oxidase; Provisional
Probab=97.43 E-value=0.00039 Score=62.35 Aligned_cols=63 Identities=27% Similarity=0.478 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHC-CCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486 67 GHVVKWLGEQAEAM-GVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL 142 (165)
Q Consensus 67 ~~~d~~L~~~A~~~-Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l 142 (165)
..+.+.|.+++++. ||+|++++.|.+|+.+ +++|+||.+.+ ++.. ..+.|+.||+|+|..+.+
T Consensus 136 ~~l~~~L~~~~~~~~gV~i~~~~~v~~Li~~-~g~v~Gv~~~~-----~~~~-------~~i~Ak~VVLATGG~~~~ 199 (513)
T PRK07512 136 AAIMRALIAAVRATPSITVLEGAEARRLLVD-DGAVAGVLAAT-----AGGP-------VVLPARAVVLATGGIGGL 199 (513)
T ss_pred HHHHHHHHHHHHhCCCCEEEECcChhheeec-CCEEEEEEEEe-----CCeE-------EEEECCEEEEcCCCCcCC
Confidence 45777888888875 9999999999999875 78999998764 1211 268999999999998754
No 126
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=97.43 E-value=0.00053 Score=62.49 Aligned_cols=65 Identities=18% Similarity=0.361 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHC-CCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486 67 GHVVKWLGEQAEAM-GVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL 142 (165)
Q Consensus 67 ~~~d~~L~~~A~~~-Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l 142 (165)
..+.+.|.+++.+. |+++++++.+++|+.+ +|+|+||...+. .+|.. ..++|+.||+|+|..+.+
T Consensus 133 ~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~-~g~v~Gv~~~~~---~~g~~-------~~i~AkaVIlATGG~~~l 198 (582)
T PRK09231 133 FHMLHTLFQTSLKYPQIQRFDEHFVLDILVD-DGHVRGLVAMNM---MEGTL-------VQIRANAVVMATGGAGRV 198 (582)
T ss_pred HHHHHHHHHHhhcCCCcEEEeCeEEEEEEEe-CCEEEEEEEEEc---CCCcE-------EEEECCEEEECCCCCcCC
Confidence 35677888888775 8999999999999986 799999876431 23432 379999999999999865
No 127
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=97.39 E-value=0.00056 Score=62.84 Aligned_cols=61 Identities=20% Similarity=0.329 Sum_probs=50.1
Q ss_pred EEEhHHHHHHHHHHHHHC-CCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCc
Q psy9486 63 VVRLGHVVKWLGEQAEAM-GVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG 140 (165)
Q Consensus 63 ~i~r~~~d~~L~~~A~~~-Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s 140 (165)
.++|..|.++|.+.+++. |++++. ..|.+++.+ +++|+||.+.+ |..|.|+.||+|+|.++
T Consensus 96 QiDr~ly~kaL~e~L~~~~nV~I~q-~~V~~Li~e-~grV~GV~t~d---------------G~~I~Ak~VIlATGTFL 157 (618)
T PRK05192 96 QADRKLYRAAMREILENQPNLDLFQ-GEVEDLIVE-NGRVVGVVTQD---------------GLEFRAKAVVLTTGTFL 157 (618)
T ss_pred hcCHHHHHHHHHHHHHcCCCcEEEE-eEEEEEEec-CCEEEEEEECC---------------CCEEECCEEEEeeCcch
Confidence 567777888888888775 899864 579999886 78999999975 46899999999999764
No 128
>PRK07395 L-aspartate oxidase; Provisional
Probab=97.38 E-value=0.00043 Score=62.76 Aligned_cols=63 Identities=27% Similarity=0.260 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHH-CCCEEecCCceeEEEEcC-CCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcc
Q psy9486 67 GHVVKWLGEQAEA-MGVEIYPGIPASEVLYHG-DGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH 141 (165)
Q Consensus 67 ~~~d~~L~~~A~~-~Gv~i~~~~~v~~i~~~~-~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~ 141 (165)
..+...|.+++++ .||+|++++.|.+|+.++ +|+|+||.+.+ +|.. ..+.||.||+|+|..+.
T Consensus 134 ~~i~~~L~~~~~~~~gi~i~~~~~v~~Li~~~~~g~v~Gv~~~~-----~g~~-------~~i~AkaVILATGG~~~ 198 (553)
T PRK07395 134 RAIVTTLTEQVLQRPNIEIISQALALSLWLEPETGRCQGISLLY-----QGQI-------TWLRAGAVILATGGGGQ 198 (553)
T ss_pred HHHHHHHHHHHhhcCCcEEEECcChhhheecCCCCEEEEEEEEE-----CCeE-------EEEEcCEEEEcCCCCcc
Confidence 3567788888876 599999999999999863 38999998753 3322 25899999999998754
No 129
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=97.36 E-value=0.00065 Score=58.62 Aligned_cols=68 Identities=18% Similarity=0.120 Sum_probs=52.4
Q ss_pred cEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCc
Q psy9486 61 NYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG 140 (165)
Q Consensus 61 ~~~i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s 140 (165)
...+.|..|.+.|.+.+.. +.++.+++|+++..++ +.+ .|.+.+ |..+.|+.||+|+|.+|
T Consensus 99 ~~~i~R~~l~~~L~~~~~~--~~v~~~~~v~~i~~~~-~~~-~v~~~~---------------g~~~~ad~vVgADG~~S 159 (414)
T TIGR03219 99 QSSVHRADFLDALLKHLPE--GIASFGKRATQIEEQA-EEV-QVLFTD---------------GTEYRCDLLIGADGIKS 159 (414)
T ss_pred cccCCHHHHHHHHHHhCCC--ceEEcCCEEEEEEecC-CcE-EEEEcC---------------CCEEEeeEEEECCCccH
Confidence 3578999999999987743 5678899999998753 333 355543 35799999999999999
Q ss_pred ccchHHH
Q psy9486 141 HLTKSLS 147 (165)
Q Consensus 141 ~l~~~l~ 147 (165)
.+.+.+.
T Consensus 160 ~vR~~l~ 166 (414)
T TIGR03219 160 ALRDYVL 166 (414)
T ss_pred HHHHHhc
Confidence 9877654
No 130
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.36 E-value=0.00065 Score=61.67 Aligned_cols=65 Identities=25% Similarity=0.308 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHH-CCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486 67 GHVVKWLGEQAEA-MGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL 142 (165)
Q Consensus 67 ~~~d~~L~~~A~~-~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l 142 (165)
..+.+.|.+++++ .||++++++.|.+++.+ +++|+||.+.+. .+|+. ..|.|+.||+|+|..+.+
T Consensus 137 ~~i~~~L~~~~~~~~gv~i~~~~~v~~Li~~-~g~v~Gv~~~~~---~~g~~-------~~i~Ak~VIlATGG~~~~ 202 (577)
T PRK06069 137 FYIMHTLYSRALRFDNIHFYDEHFVTSLIVE-NGVFKGVTAIDL---KRGEF-------KVFQAKAGIIATGGAGRL 202 (577)
T ss_pred HHHHHHHHHHHHhcCCCEEEECCEEEEEEEE-CCEEEEEEEEEc---CCCeE-------EEEECCcEEEcCchhccc
Confidence 3467788888877 69999999999999986 689999876431 13321 268999999999998754
No 131
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=97.35 E-value=0.0012 Score=55.63 Aligned_cols=62 Identities=21% Similarity=0.280 Sum_probs=49.7
Q ss_pred CcEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCC
Q psy9486 60 GNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH 139 (165)
Q Consensus 60 ~~~~i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~ 139 (165)
.|+ ++-..+...+.+.+.+.|+++++.++|+++..+ ++. +.|.+.+ | ++.|+.||+|+|.+
T Consensus 143 ~g~-v~p~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~-~~~-~~v~~~~---------------g-~~~a~~vV~A~G~~ 203 (376)
T PRK11259 143 GGF-LRPELAIKAHLRLAREAGAELLFNEPVTAIEAD-GDG-VTVTTAD---------------G-TYEAKKLVVSAGAW 203 (376)
T ss_pred CCE-EcHHHHHHHHHHHHHHCCCEEECCCEEEEEEee-CCe-EEEEeCC---------------C-EEEeeEEEEecCcc
Confidence 344 456677888889999999999999999999885 443 4577654 3 79999999999998
Q ss_pred c
Q psy9486 140 G 140 (165)
Q Consensus 140 s 140 (165)
+
T Consensus 204 ~ 204 (376)
T PRK11259 204 V 204 (376)
T ss_pred h
Confidence 6
No 132
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=97.32 E-value=0.00093 Score=61.44 Aligned_cols=65 Identities=18% Similarity=0.190 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHCCCEEecCCceeEEEEcCC--CcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486 68 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGD--GSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL 142 (165)
Q Consensus 68 ~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~--g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l 142 (165)
.+.+.|...+++.+++|++++.|.+++.+++ |+|+||.+.+. .+|+. ..|.||.||+|+|.++.+
T Consensus 127 ~~~r~l~~~l~~~~~~i~~~~~v~~Ll~d~~~~GrV~Gv~~~~~---~~g~~-------~~i~AkaVVLATGG~~~l 193 (614)
T TIGR02061 127 SYKPIVAEAAKNALGDIFERIFIVKLLLDKNTPNRIAGAVGFNV---RANEV-------HVFKAKTVIVAAGGAVNV 193 (614)
T ss_pred hHHHHHHHHHHhCCCeEEcccEEEEEEecCCCCCeEEEEEEEEe---CCCcE-------EEEECCEEEECCCccccc
Confidence 4555667777788899999999999998633 79999977431 23432 369999999999998743
No 133
>KOG2844|consensus
Probab=97.31 E-value=0.00038 Score=64.25 Aligned_cols=79 Identities=13% Similarity=0.201 Sum_probs=65.0
Q ss_pred EEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486 63 VVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL 142 (165)
Q Consensus 63 ~i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l 142 (165)
+++-..+++.|+..|++.||.|++.+.|++|..+ ++++.||+|.. ..|+|..||.|+|.|+
T Consensus 183 ~~DP~~lC~ala~~A~~~GA~viE~cpV~~i~~~-~~~~~gVeT~~----------------G~iet~~~VNaaGvWA-- 243 (856)
T KOG2844|consen 183 VMDPAGLCQALARAASALGALVIENCPVTGLHVE-TDKFGGVETPH----------------GSIETECVVNAAGVWA-- 243 (856)
T ss_pred ccCHHHHHHHHHHHHHhcCcEEEecCCcceEEee-cCCccceeccC----------------cceecceEEechhHHH--
Confidence 7888899999999999999999999999999886 45556999975 3799999999999997
Q ss_pred chHHHhhcCCCCCCCCCCC
Q psy9486 143 TKSLSSRFNLRGQCMSSGP 161 (165)
Q Consensus 143 ~~~l~~~~gl~~~~~~~~~ 161 (165)
+.+-+..|+..+.-|=||
T Consensus 244 -r~Vg~m~gvkvPL~p~~H 261 (856)
T KOG2844|consen 244 -REVGAMAGVKVPLVPMHH 261 (856)
T ss_pred -HHhhhhcCCcccceeeee
Confidence 565555676655555443
No 134
>PLN02815 L-aspartate oxidase
Probab=97.30 E-value=0.00069 Score=62.02 Aligned_cols=66 Identities=24% Similarity=0.361 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHC-CCEEecCCceeEEEEcCCC---cEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486 67 GHVVKWLGEQAEAM-GVEIYPGIPASEVLYHGDG---SVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL 142 (165)
Q Consensus 67 ~~~d~~L~~~A~~~-Gv~i~~~~~v~~i~~~~~g---~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l 142 (165)
..+.+.|.+++++. |++|++++.+.+|+.+++| +|+||.+.+. .+|.. ..|.||.||+|+|..+.+
T Consensus 155 ~~i~~~L~~~~~~~~~i~i~~~~~~~~Li~~~~g~~~~v~Gv~~~~~---~~g~~-------~~i~AkaVILATGG~g~~ 224 (594)
T PLN02815 155 REIERALLEAVKNDPNITFFEHHFAIDLLTSQDGGSIVCHGADVLDT---RTGEV-------VRFISKVTLLASGGAGHI 224 (594)
T ss_pred HHHHHHHHHHHHhcCCCEEEeceEhheeeeecCCCccEEEEEEEEEc---CCCeE-------EEEEeceEEEcCCcceee
Confidence 45777888888875 9999999999999986444 3899987531 23432 368999999999988754
No 135
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=97.28 E-value=0.0012 Score=61.34 Aligned_cols=66 Identities=14% Similarity=0.192 Sum_probs=51.4
Q ss_pred cEEEEhHHHHHHHHHHHHHCCCE-EecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCC
Q psy9486 61 NYVVRLGHVVKWLGEQAEAMGVE-IYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH 139 (165)
Q Consensus 61 ~~~i~r~~~d~~L~~~A~~~Gv~-i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~ 139 (165)
++.|+|..|.+.|++. .|.+ ++.+++|+++..+ ++.|. |.+.+ |.++.|++||.|+|++
T Consensus 188 ~~~I~R~~L~~~L~~a---lg~~~i~~g~~V~~I~~~-~d~Vt-V~~~d---------------G~ti~aDlVVGADG~~ 247 (668)
T PLN02927 188 TRVISRMTLQQILARA---VGEDVIRNESNVVDFEDS-GDKVT-VVLEN---------------GQRYEGDLLVGADGIW 247 (668)
T ss_pred EEEEeHHHHHHHHHhh---CCCCEEEcCCEEEEEEEe-CCEEE-EEECC---------------CCEEEcCEEEECCCCC
Confidence 6799999999999654 4444 5678899999775 45554 55554 3579999999999999
Q ss_pred cccchHH
Q psy9486 140 GHLTKSL 146 (165)
Q Consensus 140 s~l~~~l 146 (165)
|.+.+.+
T Consensus 248 S~vR~~l 254 (668)
T PLN02927 248 SKVRNNL 254 (668)
T ss_pred cHHHHHh
Confidence 9887765
No 136
>KOG2820|consensus
Probab=97.28 E-value=0.0016 Score=56.08 Aligned_cols=73 Identities=27% Similarity=0.389 Sum_probs=58.6
Q ss_pred CCCCcEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEE-cCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEc
Q psy9486 57 NNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLY-HGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFA 135 (165)
Q Consensus 57 ~~~~~~~i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~-~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A 135 (165)
++.+| ++...+--+.|..+|+++||.|+.+..|+.+.+ ++.+.+++|+|.+ |..+.||.+|+|
T Consensus 144 n~~gG-vi~a~kslk~~~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~---------------gs~Y~akkiI~t 207 (399)
T KOG2820|consen 144 NESGG-VINAAKSLKALQDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTD---------------GSIYHAKKIIFT 207 (399)
T ss_pred ccccc-EeeHHHHHHHHHHHHHHcCeEEecCcceeeEeeccCCCceeEEEecc---------------CCeeecceEEEE
Confidence 34556 455666677889999999999999999999875 3457788999987 457999999999
Q ss_pred ccCCcccchHHHh
Q psy9486 136 EGCHGHLTKSLSS 148 (165)
Q Consensus 136 ~G~~s~l~~~l~~ 148 (165)
.|+|- .++.+
T Consensus 208 ~GaWi---~klL~ 217 (399)
T KOG2820|consen 208 VGAWI---NKLLP 217 (399)
T ss_pred ecHHH---HhhcC
Confidence 99995 56555
No 137
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=97.26 E-value=0.001 Score=61.10 Aligned_cols=63 Identities=19% Similarity=0.356 Sum_probs=51.5
Q ss_pred EEEEhHHHHHHHHHHHHHC-CCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCc
Q psy9486 62 YVVRLGHVVKWLGEQAEAM-GVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG 140 (165)
Q Consensus 62 ~~i~r~~~d~~L~~~A~~~-Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s 140 (165)
..++|..+-++|.+.+++. |++++.+ .|.+++.+++++|+||.+.+ |..|.|+.||+|+|.+.
T Consensus 91 aQVDr~~y~~~L~e~Le~~pgV~Ile~-~Vv~li~e~~g~V~GV~t~~---------------G~~I~Ad~VILATGtfL 154 (617)
T TIGR00136 91 AQIDKVLYRKAMRNALENQPNLSLFQG-EVEDLILEDNDEIKGVVTQD---------------GLKFRAKAVIITTGTFL 154 (617)
T ss_pred HhCCHHHHHHHHHHHHHcCCCcEEEEe-EEEEEEEecCCcEEEEEECC---------------CCEEECCEEEEccCccc
Confidence 3667777778888888887 7888765 78888775468999999975 45899999999999995
No 138
>PRK09077 L-aspartate oxidase; Provisional
Probab=97.25 E-value=0.0011 Score=59.85 Aligned_cols=66 Identities=17% Similarity=0.158 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHC-CCEEecCCceeEEEEcC-----CCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCc
Q psy9486 67 GHVVKWLGEQAEAM-GVEIYPGIPASEVLYHG-----DGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG 140 (165)
Q Consensus 67 ~~~d~~L~~~A~~~-Gv~i~~~~~v~~i~~~~-----~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s 140 (165)
..+...|.+++++. ||+|++++.|.+++.++ +++|+||...+. .+|+. ..|.|+.||+|+|..+
T Consensus 138 ~~i~~~L~~~~~~~~~I~v~~~~~v~~Li~~~~~~~~~g~v~Gv~~~~~---~~g~~-------~~i~Ak~VVlATGG~~ 207 (536)
T PRK09077 138 KAVQTTLVERARNHPNITVLERHNAIDLITSDKLGLPGRRVVGAYVLNR---NKERV-------ETIRAKFVVLATGGAS 207 (536)
T ss_pred HHHHHHHHHHHHhCCCcEEEeeEEeeeeeecccccCCCCEEEEEEEEEC---CCCcE-------EEEecCeEEECCCCCC
Confidence 46778888888875 89999999999998853 389999987541 13432 3699999999999988
Q ss_pred cc
Q psy9486 141 HL 142 (165)
Q Consensus 141 ~l 142 (165)
.+
T Consensus 208 ~~ 209 (536)
T PRK09077 208 KV 209 (536)
T ss_pred CC
Confidence 54
No 139
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=97.25 E-value=0.0014 Score=55.41 Aligned_cols=58 Identities=21% Similarity=0.231 Sum_probs=46.8
Q ss_pred cEEEEhHHHHHHHHHHHHHC-CCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCC
Q psy9486 61 NYVVRLGHVVKWLGEQAEAM-GVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH 139 (165)
Q Consensus 61 ~~~i~r~~~d~~L~~~A~~~-Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~ 139 (165)
+..++-..+...|++.+.+. |++|+++++|.+|.. + +|.+.+ | .++|+.||+|+|++
T Consensus 139 ~g~v~p~~~~~~l~~~~~~~~Gv~i~~~t~V~~i~~---~---~v~t~~---------------g-~i~a~~VV~A~G~~ 196 (365)
T TIGR03364 139 ELRVEPREAIPALAAYLAEQHGVEFHWNTAVTSVET---G---TVRTSR---------------G-DVHADQVFVCPGAD 196 (365)
T ss_pred CeeECHHHHHHHHHHHHHhcCCCEEEeCCeEEEEec---C---eEEeCC---------------C-cEEeCEEEECCCCC
Confidence 34567778889999988875 999999999999943 2 566754 2 68999999999998
Q ss_pred c
Q psy9486 140 G 140 (165)
Q Consensus 140 s 140 (165)
+
T Consensus 197 s 197 (365)
T TIGR03364 197 F 197 (365)
T ss_pred h
Confidence 6
No 140
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.21 E-value=0.0013 Score=60.55 Aligned_cols=65 Identities=17% Similarity=0.290 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHC--------C-----CEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEE
Q psy9486 67 GHVVKWLGEQAEAM--------G-----VEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTI 133 (165)
Q Consensus 67 ~~~d~~L~~~A~~~--------G-----v~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI 133 (165)
..+...|.+++++. | |+|++++.|.+|+.+ +|+|+||...+. .+|+. ..|.|+.||
T Consensus 138 ~~i~~~L~~~~~~~~~~~~~~~G~~~~~v~i~~~~~v~~L~~~-~g~v~Gv~~~~~---~~g~~-------~~i~Ak~VV 206 (626)
T PRK07803 138 LELIRTLQQKIVSLQQEDHAELGDYEARIKVFAECTITELLKD-GGRIAGAFGYWR---ESGRF-------VLFEAPAVV 206 (626)
T ss_pred HHHHHHHHHHHHhhhccccccccCCcCceEEEeCCEEEEEEEE-CCEEEEEEEEEC---CCCeE-------EEEEcCeEE
Confidence 45677888888777 8 999999999999986 789999876431 23322 369999999
Q ss_pred EcccCCccc
Q psy9486 134 FAEGCHGHL 142 (165)
Q Consensus 134 ~A~G~~s~l 142 (165)
+|+|..+.+
T Consensus 207 lATGG~~~~ 215 (626)
T PRK07803 207 LATGGIGKS 215 (626)
T ss_pred ECCCcccCC
Confidence 999987654
No 141
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=97.21 E-value=0.0017 Score=58.09 Aligned_cols=71 Identities=18% Similarity=0.185 Sum_probs=53.1
Q ss_pred EEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcccc
Q psy9486 64 VRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLT 143 (165)
Q Consensus 64 i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l~ 143 (165)
++-..+...|++.|++.|+++++.++|+++..+ ++ .++|.+.+. .+|+. .+|+|+.||.|+|+|+
T Consensus 152 vd~~rl~~~l~~~A~~~Ga~i~~~~~V~~i~~~-~~-~~~v~~~~~---~~g~~-------~~i~a~~VVnAaG~wa--- 216 (508)
T PRK12266 152 VDDARLVVLNARDAAERGAEILTRTRVVSARRE-NG-LWHVTLEDT---ATGKR-------YTVRARALVNAAGPWV--- 216 (508)
T ss_pred cCHHHHHHHHHHHHHHcCCEEEcCcEEEEEEEe-CC-EEEEEEEEc---CCCCE-------EEEEcCEEEECCCccH---
Confidence 566778888999999999999999999999874 34 356766531 12221 3799999999999997
Q ss_pred hHHHhh
Q psy9486 144 KSLSSR 149 (165)
Q Consensus 144 ~~l~~~ 149 (165)
.++.+.
T Consensus 217 ~~l~~~ 222 (508)
T PRK12266 217 KQFLDD 222 (508)
T ss_pred HHHHhh
Confidence 455443
No 142
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=97.18 E-value=0.0028 Score=58.43 Aligned_cols=78 Identities=13% Similarity=0.143 Sum_probs=55.7
Q ss_pred cEEEEhHHHHHHHHHHHHHCCC--EEecCCceeEEEEcCCC-cEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEccc
Q psy9486 61 NYVVRLGHVVKWLGEQAEAMGV--EIYPGIPASEVLYHGDG-SVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEG 137 (165)
Q Consensus 61 ~~~i~r~~~d~~L~~~A~~~Gv--~i~~~~~v~~i~~~~~g-~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G 137 (165)
..++.+..+.++|.+.+.+.|+ ++..+++++++..++++ .-+.|.+.+..-+.+|+. .+++||+||.|+|
T Consensus 135 ~~~l~Q~~le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~~~~~V~v~l~~~~~~~~g~~-------~tv~A~~lVGaDG 207 (634)
T PRK08294 135 HVIVNQARVHDYFLDVMRNSPTRLEPDYGREFVDLEVDEEGEYPVTVTLRRTDGEHEGEE-------ETVRAKYVVGCDG 207 (634)
T ss_pred cEeeCHHHHHHHHHHHHHhcCCceEEEeCcEEEEEEECCCCCCCEEEEEEECCCCCCCce-------EEEEeCEEEECCC
Confidence 3678899999999999999874 77889999999875322 212344432000012321 4799999999999
Q ss_pred CCcccchH
Q psy9486 138 CHGHLTKS 145 (165)
Q Consensus 138 ~~s~l~~~ 145 (165)
++|.+.++
T Consensus 208 a~S~VR~~ 215 (634)
T PRK08294 208 ARSRVRKA 215 (634)
T ss_pred CchHHHHh
Confidence 99999777
No 143
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=97.17 E-value=0.0019 Score=57.24 Aligned_cols=60 Identities=20% Similarity=0.276 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486 67 GHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL 142 (165)
Q Consensus 67 ~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l 142 (165)
..+.+.|.+.+++.|++|++++.|++|..+ ++++++|++.+ |.++.|+.||.|.+....+
T Consensus 219 ~~l~~al~~~~~~~G~~i~~~~~V~~i~~~-~~~~~~V~~~~---------------g~~~~ad~VI~a~~~~~~~ 278 (502)
T TIGR02734 219 GALVAAMAKLAEDLGGELRLNAEVIRIETE-GGRATAVHLAD---------------GERLDADAVVSNADLHHTY 278 (502)
T ss_pred HHHHHHHHHHHHHCCCEEEECCeEEEEEee-CCEEEEEEECC---------------CCEEECCEEEECCcHHHHH
Confidence 578889999999999999999999999886 67888998875 4579999999998875443
No 144
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=97.16 E-value=0.0014 Score=60.46 Aligned_cols=61 Identities=16% Similarity=0.131 Sum_probs=50.1
Q ss_pred EEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcc
Q psy9486 63 VVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH 141 (165)
Q Consensus 63 ~i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~ 141 (165)
.++-..+...|.+.+++ |+++++++.|+++..+ ++.+. |.+.+ |..+.|+.||+|+|+++.
T Consensus 404 ~v~p~~l~~aL~~~a~~-Gv~i~~~~~V~~i~~~-~~~~~-v~t~~---------------g~~~~ad~VV~A~G~~s~ 464 (662)
T PRK01747 404 WLCPAELCRALLALAGQ-QLTIHFGHEVARLERE-DDGWQ-LDFAG---------------GTLASAPVVVLANGHDAA 464 (662)
T ss_pred eeCHHHHHHHHHHhccc-CcEEEeCCEeeEEEEe-CCEEE-EEECC---------------CcEEECCEEEECCCCCcc
Confidence 45778999999999999 9999999999999875 45544 66654 345789999999999973
No 145
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=97.15 E-value=0.0028 Score=54.48 Aligned_cols=64 Identities=20% Similarity=0.191 Sum_probs=50.3
Q ss_pred cEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCc
Q psy9486 61 NYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG 140 (165)
Q Consensus 61 ~~~i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s 140 (165)
..+|+|..|+++|.+++.+.| .++.++.|.+|..+. + .+.|.+.+ |.+++|++||+|+|..+
T Consensus 81 Y~~i~~~~f~~~l~~~~~~~~-~~~~~~~V~~i~~~~-~-~~~v~~~~---------------g~~i~a~~VvDa~g~~~ 142 (374)
T PF05834_consen 81 YCMIDRADFYEFLLERAAAGG-VIRLNARVTSIEETG-D-GVLVVLAD---------------GRTIRARVVVDARGPSS 142 (374)
T ss_pred eEEEEHHHHHHHHHHHhhhCC-eEEEccEEEEEEecC-c-eEEEEECC---------------CCEEEeeEEEECCCccc
Confidence 459999999999999999544 567788999997753 3 34466665 46899999999999776
Q ss_pred cc
Q psy9486 141 HL 142 (165)
Q Consensus 141 ~l 142 (165)
..
T Consensus 143 ~~ 144 (374)
T PF05834_consen 143 PK 144 (374)
T ss_pred cc
Confidence 53
No 146
>KOG4254|consensus
Probab=97.13 E-value=0.00076 Score=59.93 Aligned_cols=61 Identities=23% Similarity=0.399 Sum_probs=54.2
Q ss_pred hHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486 66 LGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL 142 (165)
Q Consensus 66 r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l 142 (165)
.+.+-..+++-|+++|++|+++.+|.+|+.| +|+++||+..+ |.++++|+||--++.|-..
T Consensus 263 ~Gavs~aia~~~~~~GaeI~tka~Vq~Illd-~gka~GV~L~d---------------G~ev~sk~VvSNAt~~~Tf 323 (561)
T KOG4254|consen 263 MGAVSFAIAEGAKRAGAEIFTKATVQSILLD-SGKAVGVRLAD---------------GTEVRSKIVVSNATPWDTF 323 (561)
T ss_pred hhHHHHHHHHHHHhccceeeehhhhhheecc-CCeEEEEEecC---------------CcEEEeeeeecCCchHHHH
Confidence 4577788999999999999999999999997 69999999987 6899999999888877554
No 147
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=97.11 E-value=0.0051 Score=55.34 Aligned_cols=82 Identities=15% Similarity=0.170 Sum_probs=58.7
Q ss_pred CCcEEEEhHHHHHHHHHHHHH-CCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEccc
Q psy9486 59 HGNYVVRLGHVVKWLGEQAEA-MGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEG 137 (165)
Q Consensus 59 ~~~~~i~r~~~d~~L~~~A~~-~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G 137 (165)
..+..|+-..+.+.|.+.+.+ .|++|+++++|.++..++++.+. |.+.+. .+|+ ..+++|+.||+|+|
T Consensus 176 p~~~~VD~~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d~~w~-v~v~~t---~~g~-------~~~i~Ad~VV~AAG 244 (497)
T PRK13339 176 DEGTDVNFGALTRKLAKHLESHPNAQVKYNHEVVDLERLSDGGWE-VTVKDR---NTGE-------KREQVADYVFIGAG 244 (497)
T ss_pred CCceecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEECCCCCEE-EEEEec---CCCc-------eEEEEcCEEEECCC
Confidence 345678888999999999965 59999999999999875344433 332110 0110 02699999999999
Q ss_pred CCcccchHHHhhcCCCC
Q psy9486 138 CHGHLTKSLSSRFNLRG 154 (165)
Q Consensus 138 ~~s~l~~~l~~~~gl~~ 154 (165)
+|+ ..+.+++|+..
T Consensus 245 awS---~~La~~~Gi~~ 258 (497)
T PRK13339 245 GGA---IPLLQKSGIPE 258 (497)
T ss_pred cch---HHHHHHcCCCc
Confidence 998 67777788753
No 148
>PRK07236 hypothetical protein; Provisional
Probab=97.07 E-value=0.0022 Score=54.89 Aligned_cols=64 Identities=14% Similarity=0.058 Sum_probs=48.8
Q ss_pred EEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcccc
Q psy9486 64 VRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLT 143 (165)
Q Consensus 64 i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l~ 143 (165)
+.+..+.+.|.+.. .+++|+.+++|+++..+ ++.|. |...+ |.+++|++||.|+|.+|.+.
T Consensus 97 ~~~~~l~~~L~~~~--~~~~i~~~~~v~~i~~~-~~~v~-v~~~~---------------g~~~~ad~vIgADG~~S~vR 157 (386)
T PRK07236 97 TSWNVLYRALRAAF--PAERYHLGETLVGFEQD-GDRVT-ARFAD---------------GRRETADLLVGADGGRSTVR 157 (386)
T ss_pred cCHHHHHHHHHHhC--CCcEEEcCCEEEEEEec-CCeEE-EEECC---------------CCEEEeCEEEECCCCCchHH
Confidence 56778888887643 35789999999999875 34433 55543 35899999999999999997
Q ss_pred hHH
Q psy9486 144 KSL 146 (165)
Q Consensus 144 ~~l 146 (165)
+.+
T Consensus 158 ~~l 160 (386)
T PRK07236 158 AQL 160 (386)
T ss_pred HHh
Confidence 774
No 149
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=97.05 E-value=0.0029 Score=55.31 Aligned_cols=72 Identities=24% Similarity=0.269 Sum_probs=55.3
Q ss_pred EhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcc---
Q psy9486 65 RLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH--- 141 (165)
Q Consensus 65 ~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~--- 141 (165)
+...+.+.|.+++++.||+|++.++|.++..+ + ....+.+.+ |.+|+|+.+|+|+|..|.
T Consensus 109 kA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~-~-~~f~l~t~~---------------g~~i~~d~lilAtGG~S~P~l 171 (408)
T COG2081 109 KASPIVDALLKELEALGVTIRTRSRVSSVEKD-D-SGFRLDTSS---------------GETVKCDSLILATGGKSWPKL 171 (408)
T ss_pred chHHHHHHHHHHHHHcCcEEEecceEEeEEec-C-ceEEEEcCC---------------CCEEEccEEEEecCCcCCCCC
Confidence 34567778899999999999999999999885 3 334566665 347999999999995553
Q ss_pred ----cchHHHhhcCCC
Q psy9486 142 ----LTKSLSSRFNLR 153 (165)
Q Consensus 142 ----l~~~l~~~~gl~ 153 (165)
..-++.+++|+.
T Consensus 172 Gstg~gy~iA~~~G~~ 187 (408)
T COG2081 172 GSTGFGYPIARQFGHT 187 (408)
T ss_pred CCCchhhHHHHHcCCc
Confidence 235666668875
No 150
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=97.02 E-value=0.0033 Score=54.86 Aligned_cols=64 Identities=20% Similarity=0.237 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCc
Q psy9486 67 GHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG 140 (165)
Q Consensus 67 ~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s 140 (165)
..+.+.|.+.+++.|++|.++++|++|..+++++|+||++.+ ..|+.. .++.||.||.|...+.
T Consensus 213 ~~l~~~l~~~l~~~g~~i~l~~~V~~I~~~~~~~v~~v~~~~----~~~~~~------~~~~a~~VI~a~p~~~ 276 (453)
T TIGR02731 213 ERLCQPIVDYITSRGGEVRLNSRLKEIVLNEDGSVKHFVLAD----GEGQRR------FEVTADAYVSAMPVDI 276 (453)
T ss_pred HHHHHHHHHHHHhcCCEEeCCCeeEEEEECCCCCEEEEEEec----CCCCce------eEEECCEEEEcCCHHH
Confidence 456778888888899999999999999876577899998864 111110 1689999999997654
No 151
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=96.97 E-value=0.0049 Score=52.06 Aligned_cols=68 Identities=24% Similarity=0.369 Sum_probs=54.3
Q ss_pred EEEhHHHHHHHHHHHHHCC-CEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcc
Q psy9486 63 VVRLGHVVKWLGEQAEAMG-VEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH 141 (165)
Q Consensus 63 ~i~r~~~d~~L~~~A~~~G-v~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~ 141 (165)
.++-..+.+.|++.++++| +.++..+.+..+..+ . ++.+|+|.. | ++.|+.||+|+|+|+
T Consensus 152 ~~~p~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~-~-~~~~v~t~~---------------g-~i~a~~vv~a~G~~~- 212 (387)
T COG0665 152 HLDPRLLTRALAAAAEELGVVIIEGGTPVTSLERD-G-RVVGVETDG---------------G-TIEADKVVLAAGAWA- 212 (387)
T ss_pred cCCHHHHHHHHHHHHHhcCCeEEEccceEEEEEec-C-cEEEEEeCC---------------c-cEEeCEEEEcCchHH-
Confidence 4555788899999999999 566668888888764 3 778899986 3 599999999999997
Q ss_pred cchHHHhhcC
Q psy9486 142 LTKSLSSRFN 151 (165)
Q Consensus 142 l~~~l~~~~g 151 (165)
..+...++
T Consensus 213 --~~l~~~~~ 220 (387)
T COG0665 213 --GELAATLG 220 (387)
T ss_pred --HHHHHhcC
Confidence 55555566
No 152
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=96.87 E-value=0.0017 Score=53.29 Aligned_cols=72 Identities=22% Similarity=0.354 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHC-CCEEecCCceeEEEEc-CCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcccchHH
Q psy9486 69 VVKWLGEQAEAM-GVEIYPGIPASEVLYH-GDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLTKSL 146 (165)
Q Consensus 69 ~d~~L~~~A~~~-Gv~i~~~~~v~~i~~~-~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l~~~l 146 (165)
...|| ..|.+. |++|++++.|++|+++ ++++++||+..+ .++... -..+.||.||+|.|+-. +.+|
T Consensus 195 ~~~~L-~~a~~~~n~~l~~~~~V~~i~~~~~~~~a~gV~~~~----~~~~~~-----~~~~~ak~VIlaAGai~--Tp~L 262 (296)
T PF00732_consen 195 ATTYL-PPALKRPNLTLLTNARVTRIIFDGDGGRATGVEYVD----NDGGVQ-----RRIVAAKEVILAAGAIG--TPRL 262 (296)
T ss_dssp HHHHH-HHHTTTTTEEEEESEEEEEEEEETTSTEEEEEEEEE----TTTSEE-----EEEEEEEEEEE-SHHHH--HHHH
T ss_pred hhccc-chhhccCCccEEcCcEEEEEeeeccccceeeeeeee----cCCcce-----eeeccceeEEeccCCCC--Chhh
Confidence 44454 455554 9999999999999885 467999999987 334300 13678899999999644 4566
Q ss_pred HhhcCC
Q psy9486 147 SSRFNL 152 (165)
Q Consensus 147 ~~~~gl 152 (165)
+-.-|+
T Consensus 263 Ll~SGi 268 (296)
T PF00732_consen 263 LLRSGI 268 (296)
T ss_dssp HHHTTE
T ss_pred hccccc
Confidence 655565
No 153
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.80 E-value=0.0041 Score=55.47 Aligned_cols=57 Identities=30% Similarity=0.415 Sum_probs=47.8
Q ss_pred hHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccC
Q psy9486 66 LGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGC 138 (165)
Q Consensus 66 r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~ 138 (165)
.+.+.+.|++.|++.|++|+++++|++|+.+ +|+.++|.+.+ |..+.||.||.+...
T Consensus 223 ~~al~~aL~~~~~~~Gg~I~~~~~V~~I~v~-~g~g~~~~~~~---------------g~~~~ad~vv~~~~~ 279 (487)
T COG1233 223 MGALVDALAELAREHGGEIRTGAEVSQILVE-GGKGVGVRTSD---------------GENIEADAVVSNADP 279 (487)
T ss_pred HHHHHHHHHHHHHHcCCEEECCCceEEEEEe-CCcceEEeccc---------------cceeccceeEecCch
Confidence 4578899999999999999999999999996 67766676664 236899999987776
No 154
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=96.78 E-value=0.0088 Score=51.92 Aligned_cols=70 Identities=20% Similarity=0.200 Sum_probs=53.1
Q ss_pred hHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcc----
Q psy9486 66 LGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH---- 141 (165)
Q Consensus 66 r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~---- 141 (165)
...+.+.|.+.+++.|+++++++.|+++..+ ++ .+.|++.. .++.|+.||+|+|.++.
T Consensus 104 a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~-~~-~~~v~~~~----------------~~i~ad~VIlAtG~~s~p~~g 165 (400)
T TIGR00275 104 AADVLDALLNELKELGVEILTNSKVKSIKKD-DN-GFGVETSG----------------GEYEADKVILATGGLSYPQLG 165 (400)
T ss_pred HHHHHHHHHHHHHHCCCEEEeCCEEEEEEec-CC-eEEEEECC----------------cEEEcCEEEECCCCcccCCCC
Confidence 4678889999999999999999999999764 33 45566632 47999999999998652
Q ss_pred ---cchHHHhhcCCC
Q psy9486 142 ---LTKSLSSRFNLR 153 (165)
Q Consensus 142 ---l~~~l~~~~gl~ 153 (165)
-.-++.+++|..
T Consensus 166 s~G~g~~la~~lG~~ 180 (400)
T TIGR00275 166 STGDGYEIAESLGHT 180 (400)
T ss_pred CCcHHHHHHHHCCCC
Confidence 123556667774
No 155
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=96.75 E-value=0.0084 Score=53.14 Aligned_cols=60 Identities=20% Similarity=0.319 Sum_probs=51.0
Q ss_pred hHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCc
Q psy9486 66 LGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG 140 (165)
Q Consensus 66 r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s 140 (165)
.+.+-+.|++.++..|++++++++|++|.+++++++++|++.+ |.+++|+.||.....+.
T Consensus 231 ~g~L~qal~r~~a~~Gg~~~L~~~V~~I~~~~~g~~~~V~~~~---------------Ge~i~a~~VV~~~s~~p 290 (443)
T PTZ00363 231 LGGLPQAFSRLCAIYGGTYMLNTPVDEVVFDENGKVCGVKSEG---------------GEVAKCKLVICDPSYFP 290 (443)
T ss_pred HHHHHHHHHHHHHHcCcEEEcCCeEEEEEEcCCCeEEEEEECC---------------CcEEECCEEEECccccc
Confidence 3578889999999999999999999999987567899999876 46899999998666553
No 156
>PLN02612 phytoene desaturase
Probab=96.74 E-value=0.0073 Score=54.93 Aligned_cols=56 Identities=16% Similarity=0.210 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccC
Q psy9486 68 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGC 138 (165)
Q Consensus 68 ~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~ 138 (165)
.+...|.+..++.|++|+++++|++|..++++++++|++.+ |..+.||.||.|...
T Consensus 309 ~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~v~~~~---------------G~~~~ad~VI~a~p~ 364 (567)
T PLN02612 309 RLCMPIVDHFQSLGGEVRLNSRIKKIELNDDGTVKHFLLTN---------------GSVVEGDVYVSATPV 364 (567)
T ss_pred HHHHHHHHHHHhcCCEEEeCCeeeEEEECCCCcEEEEEECC---------------CcEEECCEEEECCCH
Confidence 46677788888899999999999999986678788888865 457999999999864
No 157
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=96.71 E-value=0.0056 Score=55.97 Aligned_cols=67 Identities=13% Similarity=0.126 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHCCCEEecCCceeEEEEc-CC--CcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcccc
Q psy9486 68 HVVKWLGEQAEAMGVEIYPGIPASEVLYH-GD--GSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLT 143 (165)
Q Consensus 68 ~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~-~~--g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l~ 143 (165)
.+..-|.+.+++.||+|+++++|++|+.+ ++ ++|+||.+...| .+..+ ....+|.||+|+|.-..-+
T Consensus 227 SLV~PL~~~Le~~GV~f~~~t~VtdL~~~~d~~~~~VtgI~~~~~~---~~~~I------~l~~~DlVivTnGs~t~ns 296 (576)
T PRK13977 227 SLVLPLIKYLEDHGVDFQYGTKVTDIDFDITGGKKTATAIHLTRNG---KEETI------DLTEDDLVFVTNGSITESS 296 (576)
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCCceEEEEEEEEeCC---ceeEE------EecCCCEEEEeCCcCcccc
Confidence 35566899999999999999999999985 23 689999886422 11111 2356799999999776553
No 158
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=96.70 E-value=0.0079 Score=53.19 Aligned_cols=63 Identities=11% Similarity=0.119 Sum_probs=49.5
Q ss_pred hHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCC
Q psy9486 66 LGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH 139 (165)
Q Consensus 66 r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~ 139 (165)
...+...|.+.+++.|++|+++++|++|..+ ++++.||.+.+. ..|+ +.++.||.||.|.-..
T Consensus 231 ~~~l~~aL~~~~~~~G~~i~~~~~V~~I~~~-~~~~~gv~~~~~---~~~~-------~~~~~ad~VI~~~~~~ 293 (492)
T TIGR02733 231 MQTLSDRLVEALKRDGGNLLTGQRVTAIHTK-GGRAGWVVVVDS---RKQE-------DLNVKADDVVANLPPQ 293 (492)
T ss_pred HHHHHHHHHHHHHhcCCEEeCCceEEEEEEe-CCeEEEEEEecC---CCCc-------eEEEECCEEEECCCHH
Confidence 4578889999999999999999999999986 577888877541 0110 1479999999998864
No 159
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=96.67 E-value=0.0019 Score=60.66 Aligned_cols=61 Identities=13% Similarity=0.245 Sum_probs=49.1
Q ss_pred EEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcc
Q psy9486 62 YVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH 141 (165)
Q Consensus 62 ~~i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~ 141 (165)
+.+.|..|.+.|.++|+++||+|+++++|+++. + ..+.||+||+|+|.+|.
T Consensus 92 ~~i~R~~L~~~L~e~a~~~GV~i~~g~~v~~i~-------------~----------------~~~~~D~VVgADG~~S~ 142 (765)
T PRK08255 92 AGIGRKRLLNILQARCEELGVKLVFETEVPDDQ-------------A----------------LAADADLVIASDGLNSR 142 (765)
T ss_pred ecCCHHHHHHHHHHHHHHcCCEEEeCCccCchh-------------h----------------hhcCCCEEEEcCCCCHH
Confidence 358999999999999999999999998776541 1 12578999999999999
Q ss_pred cchHHHhhcC
Q psy9486 142 LTKSLSSRFN 151 (165)
Q Consensus 142 l~~~l~~~~g 151 (165)
+.+++...++
T Consensus 143 vR~~~~~~~~ 152 (765)
T PRK08255 143 IRTRYADTFQ 152 (765)
T ss_pred HHHHHHhhcC
Confidence 9777654444
No 160
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=96.66 E-value=0.012 Score=51.30 Aligned_cols=71 Identities=13% Similarity=0.122 Sum_probs=51.6
Q ss_pred EhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcc---
Q psy9486 65 RLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH--- 141 (165)
Q Consensus 65 ~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~--- 141 (165)
....+-..|..+++++||+|+++++|++| + ++. .+|.+.. + +..++|+.||+|+|..+.
T Consensus 84 ~A~sVv~~L~~~l~~~gV~i~~~~~V~~i--~-~~~-~~v~~~~------~--------~~~~~a~~vIlAtGG~s~p~~ 145 (376)
T TIGR03862 84 KAAPLLRAWLKRLAEQGVQFHTRHRWIGW--Q-GGT-LRFETPD------G--------QSTIEADAVVLALGGASWSQL 145 (376)
T ss_pred CHHHHHHHHHHHHHHCCCEEEeCCEEEEE--e-CCc-EEEEECC------C--------ceEEecCEEEEcCCCcccccc
Confidence 34566778899999999999999999998 3 333 5677643 0 136999999999998652
Q ss_pred ----cchHHHhhcCCC
Q psy9486 142 ----LTKSLSSRFNLR 153 (165)
Q Consensus 142 ----l~~~l~~~~gl~ 153 (165)
-.-++.+++|..
T Consensus 146 Gs~g~gy~la~~lGh~ 161 (376)
T TIGR03862 146 GSDGAWQQVLDQRGVS 161 (376)
T ss_pred CCCcHHHHHHHHCCCc
Confidence 113566667764
No 161
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=96.62 E-value=0.0076 Score=57.64 Aligned_cols=63 Identities=27% Similarity=0.275 Sum_probs=47.2
Q ss_pred HHHHHHHHHHH----CCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486 69 VVKWLGEQAEA----MGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL 142 (165)
Q Consensus 69 ~d~~L~~~A~~----~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l 142 (165)
+.+.|.+.+.+ .++.+++.+.+.+++.+ +|+|+||...+. .+|+. ..|.||.||+|||..+.+
T Consensus 141 i~~~L~~~l~~~~~~~~i~~~~~~~~~~Li~~-~g~v~Gv~~~~~---~~g~~-------~~i~AkaVILATGG~g~~ 207 (897)
T PRK13800 141 VKKALYRVLRQRSMRERIRIENRLMPVRVLTE-GGRAVGAAALNT---RTGEF-------VTVGAKAVILATGPCGRL 207 (897)
T ss_pred HHHHHHHHHHHhhhcCCcEEEeceeeEEEEee-CCEEEEEEEEec---CCCcE-------EEEECCEEEECCCccccC
Confidence 44556666554 37899999999999886 789999987441 24443 369999999999998865
No 162
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=96.48 E-value=0.0095 Score=53.47 Aligned_cols=73 Identities=11% Similarity=0.090 Sum_probs=49.2
Q ss_pred hHHHHHHHHHHHH-HCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcccch
Q psy9486 66 LGHVVKWLGEQAE-AMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLTK 144 (165)
Q Consensus 66 r~~~d~~L~~~A~-~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l~~ 144 (165)
|......++..|+ +.|++|++++.|++|+++ +++++||++.+ .|.. ...+.||.||+|.|+.. +.
T Consensus 192 r~s~~~~~l~~a~~r~nl~i~~~~~V~rI~~~-~~ra~GV~~~~-----~~~~------~~~~~ak~VIlaAGai~--SP 257 (532)
T TIGR01810 192 RVSAARAYLHPAMKRPNLEVQTRAFVTKINFE-GNRATGVEFKK-----GGRK------EHTEANKEVILSAGAIN--SP 257 (532)
T ss_pred EEcHHHHHhhhhccCCCeEEEeCCEEEEEEec-CCeEEEEEEEe-----CCcE------EEEEEeeeEEEccCCCC--CH
Confidence 4333333345565 567999999999999996 78999998865 1211 12468999999999833 24
Q ss_pred HHHhhcCC
Q psy9486 145 SLSSRFNL 152 (165)
Q Consensus 145 ~l~~~~gl 152 (165)
+|+..-|+
T Consensus 258 ~LLl~SGI 265 (532)
T TIGR01810 258 QLLQLSGI 265 (532)
T ss_pred HHHHhcCC
Confidence 44444444
No 163
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=96.48 E-value=0.0028 Score=57.51 Aligned_cols=62 Identities=24% Similarity=0.421 Sum_probs=48.4
Q ss_pred cEEEEhHHHHHHHHHHHHH------CCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEE
Q psy9486 61 NYVVRLGHVVKWLGEQAEA------MGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIF 134 (165)
Q Consensus 61 ~~~i~r~~~d~~L~~~A~~------~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~ 134 (165)
+--..|...|+++++++.+ .+..|+.+ .|.+++.+++.+|+||.|.+ |..|.|+.||+
T Consensus 89 AVra~RaQaDk~~Y~~~mk~~le~~~NL~l~q~-~v~dli~e~~~~v~GV~t~~---------------G~~~~a~aVVl 152 (621)
T COG0445 89 AVRAPRAQADKWLYRRAMKNELENQPNLHLLQG-EVEDLIVEEGQRVVGVVTAD---------------GPEFHAKAVVL 152 (621)
T ss_pred hhcchhhhhhHHHHHHHHHHHHhcCCCceehHh-hhHHHhhcCCCeEEEEEeCC---------------CCeeecCEEEE
Confidence 3345688889888888765 37777755 68889886334699999986 67999999999
Q ss_pred cccC
Q psy9486 135 AEGC 138 (165)
Q Consensus 135 A~G~ 138 (165)
++|.
T Consensus 153 TTGT 156 (621)
T COG0445 153 TTGT 156 (621)
T ss_pred eecc
Confidence 9993
No 164
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=96.47 E-value=0.02 Score=51.14 Aligned_cols=81 Identities=21% Similarity=0.290 Sum_probs=62.5
Q ss_pred CCcEEEEhHHHHHHHHHHHHHC-CCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEccc
Q psy9486 59 HGNYVVRLGHVVKWLGEQAEAM-GVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEG 137 (165)
Q Consensus 59 ~~~~~i~r~~~d~~L~~~A~~~-Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G 137 (165)
..|.-|+=+.+.+-|.+.+++. |+++++++.|++|...+||+ +-|.+.+. .+|+. .+++|++|++.+|
T Consensus 173 ~~GTDVnFG~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~dg~-W~v~~~~~---~~~~~-------~~v~a~FVfvGAG 241 (488)
T PF06039_consen 173 EEGTDVNFGALTRQLVEYLQKQKGFELHLNHEVTDIKRNGDGR-WEVKVKDL---KTGEK-------REVRAKFVFVGAG 241 (488)
T ss_pred CCCccccHHHHHHHHHHHHHhCCCcEEEecCEeCeeEECCCCC-EEEEEEec---CCCCe-------EEEECCEEEECCc
Confidence 3467788889999999999997 99999999999999976674 33554431 23332 4899999999999
Q ss_pred CCcccchHHHhhcCCC
Q psy9486 138 CHGHLTKSLSSRFNLR 153 (165)
Q Consensus 138 ~~s~l~~~l~~~~gl~ 153 (165)
..+ -.|..+.|+.
T Consensus 242 G~a---L~LLqksgi~ 254 (488)
T PF06039_consen 242 GGA---LPLLQKSGIP 254 (488)
T ss_pred hHh---HHHHHHcCCh
Confidence 886 4566678874
No 165
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=96.06 E-value=0.043 Score=47.72 Aligned_cols=67 Identities=21% Similarity=0.277 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcccchHH
Q psy9486 67 GHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLTKSL 146 (165)
Q Consensus 67 ~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l~~~l 146 (165)
..+.+++.+.+++.|+++++++++.++.. ++++.++.+.+ .++.|+.||+|+|..... .+
T Consensus 191 ~~~~~~l~~~l~~~gI~v~~~~~v~~i~~--~~~~~~v~~~~----------------~~i~~d~vi~a~G~~p~~--~~ 250 (444)
T PRK09564 191 KEITDVMEEELRENGVELHLNEFVKSLIG--EDKVEGVVTDK----------------GEYEADVVIVATGVKPNT--EF 250 (444)
T ss_pred HHHHHHHHHHHHHCCCEEEcCCEEEEEec--CCcEEEEEeCC----------------CEEEcCEEEECcCCCcCH--HH
Confidence 35666778888999999999999999943 45666666543 379999999999987643 44
Q ss_pred HhhcCCC
Q psy9486 147 SSRFNLR 153 (165)
Q Consensus 147 ~~~~gl~ 153 (165)
.+..|+.
T Consensus 251 l~~~gl~ 257 (444)
T PRK09564 251 LEDTGLK 257 (444)
T ss_pred HHhcCcc
Confidence 5556653
No 166
>KOG0042|consensus
Probab=96.04 E-value=0.0038 Score=56.69 Aligned_cols=73 Identities=21% Similarity=0.241 Sum_probs=58.5
Q ss_pred EhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcccch
Q psy9486 65 RLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLTK 144 (165)
Q Consensus 65 ~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l~~ 144 (165)
+-..++-.++=-|...|+.+..-+.|.+++.+.+++|.|+++.|. ..|+. .+|+||.||.|+|..+---+
T Consensus 222 nDaRmnl~vAlTA~r~GA~v~Nh~ev~~Llkd~~~kv~Ga~~rD~---iTG~e-------~~I~Ak~VVNATGpfsDsIr 291 (680)
T KOG0042|consen 222 NDARMNLAVALTAARNGATVLNHVEVVSLLKDKDGKVIGARARDH---ITGKE-------YEIRAKVVVNATGPFSDSIR 291 (680)
T ss_pred chHHHHHHHHHHHHhcchhhhhHHHHHHHhhCCCCceeeeEEEEe---ecCcE-------EEEEEEEEEeCCCCccHHHH
Confidence 344566677888999999999999999999988899999998873 45654 47999999999999874444
Q ss_pred HHH
Q psy9486 145 SLS 147 (165)
Q Consensus 145 ~l~ 147 (165)
+|.
T Consensus 292 ~Md 294 (680)
T KOG0042|consen 292 KMD 294 (680)
T ss_pred hhc
Confidence 443
No 167
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=96.04 E-value=0.014 Score=52.41 Aligned_cols=66 Identities=21% Similarity=0.341 Sum_probs=52.9
Q ss_pred hHHHHHHHHHHHHH-CCCEEecCCceeEEEEcCCC-cEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcccc
Q psy9486 66 LGHVVKWLGEQAEA-MGVEIYPGIPASEVLYHGDG-SVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLT 143 (165)
Q Consensus 66 r~~~d~~L~~~A~~-~Gv~i~~~~~v~~i~~~~~g-~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l~ 143 (165)
-..+.+.|.+++++ .++++++++.+.+|+.+ ++ .+.||.+.+ .+++. ..|+|+.||+|+|.-+.|-
T Consensus 132 G~~I~~~L~~~v~~~p~I~v~e~~~a~~li~~-~~~~~~Gv~~~~----~~~~~-------~~~~a~~vVLATGG~g~ly 199 (518)
T COG0029 132 GKEIMTALLKKVRNRPNITVLEGAEALDLIIE-DGIGVAGVLVLN----RNGEL-------GTFRAKAVVLATGGLGGLY 199 (518)
T ss_pred cHHHHHHHHHHHhcCCCcEEEecchhhhhhhc-CCceEeEEEEec----CCCeE-------EEEecCeEEEecCCCcccc
Confidence 35677889999988 89999999999999997 56 566998875 22211 4799999999999998663
No 168
>KOG2404|consensus
Probab=95.98 E-value=0.021 Score=49.29 Aligned_cols=72 Identities=21% Similarity=0.303 Sum_probs=56.1
Q ss_pred HHHHHHHHHHC--CCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcccchHHH
Q psy9486 70 VKWLGEQAEAM--GVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLTKSLS 147 (165)
Q Consensus 70 d~~L~~~A~~~--Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l~~~l~ 147 (165)
-..|-+.|.+. =++|...++|.+|.. ++|+|.||+..+ .+|+.. .+.++.||+|+|..+.-.+.|.
T Consensus 146 ~~~l~k~as~~pe~~ki~~nskvv~il~-n~gkVsgVeymd----~sgek~-------~~~~~~VVlatGGf~ysd~~lL 213 (477)
T KOG2404|consen 146 STRLKKKASENPELVKILLNSKVVDILR-NNGKVSGVEYMD----ASGEKS-------KIIGDAVVLATGGFGYSDKELL 213 (477)
T ss_pred HHHHHHhhhcChHHHhhhhcceeeeeec-CCCeEEEEEEEc----CCCCcc-------ceecCceEEecCCcCcChHHHH
Confidence 33444445442 489999999999996 489999998876 677653 6889999999999997778998
Q ss_pred hhcCCC
Q psy9486 148 SRFNLR 153 (165)
Q Consensus 148 ~~~gl~ 153 (165)
+.|+-+
T Consensus 214 Key~pe 219 (477)
T KOG2404|consen 214 KEYGPE 219 (477)
T ss_pred HHhChh
Confidence 888643
No 169
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=95.94 E-value=0.043 Score=48.44 Aligned_cols=59 Identities=22% Similarity=0.291 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCc
Q psy9486 68 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG 140 (165)
Q Consensus 68 ~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s 140 (165)
++.+.|.+..++.|++|+++++|.++..+ +++|..|.+.+ |. ...+.||.||+|+|...
T Consensus 260 rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~-~~~V~~v~~~~------g~-------~~~i~AD~VVLAtGrf~ 318 (422)
T PRK05329 260 RLQNALRRAFERLGGRIMPGDEVLGAEFE-GGRVTAVWTRN------HG-------DIPLRARHFVLATGSFF 318 (422)
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEEe-CCEEEEEEeeC------Cc-------eEEEECCEEEEeCCCcc
Confidence 57778899999999999999999999875 56777765432 21 13699999999999753
No 170
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=95.85 E-value=0.042 Score=50.70 Aligned_cols=70 Identities=19% Similarity=0.146 Sum_probs=50.0
Q ss_pred HHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEcccc---ccCCCCCCCCCCcCe--EEEcCEEEEcccCCcc
Q psy9486 72 WLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVG---IAKDGSPKDTFARGM--ELHAKVTIFAEGCHGH 141 (165)
Q Consensus 72 ~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g---~~~~g~~~~~~~~g~--~i~Ak~VI~A~G~~s~ 141 (165)
...+.+++.||+|++++.+.++..+++|+|.||++..+- .|.+|+..+.+.+|. .+.+|.||+|.|....
T Consensus 511 ~e~~~~~~~Gv~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~AiG~~p~ 585 (654)
T PRK12769 511 KEVKNAREEGANFEFNVQPVALELNEQGHVCGIRFLRTRLGEPDAQGRRRPVPIPGSEFVMPADAVIMAFGFNPH 585 (654)
T ss_pred HHHHHHHHcCCeEEeccCcEEEEECCCCeEEEEEEEEEEecCcCCCCCCcceeCCCceEEEECCEEEECccCCCC
Confidence 346778899999999999999987657899998864321 134454332222333 5999999999997754
No 171
>PRK07233 hypothetical protein; Provisional
Probab=95.84 E-value=0.044 Score=46.90 Aligned_cols=56 Identities=29% Similarity=0.364 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCC
Q psy9486 67 GHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH 139 (165)
Q Consensus 67 ~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~ 139 (165)
..+.+.|.+.+++.|++|+++++|++|..+ +++++++..+ +..+.|+.||.|....
T Consensus 198 ~~l~~~l~~~l~~~g~~v~~~~~V~~i~~~-~~~~~~~~~~----------------~~~~~ad~vI~a~p~~ 253 (434)
T PRK07233 198 ATLIDALAEAIEARGGEIRLGTPVTSVVID-GGGVTGVEVD----------------GEEEDFDAVISTAPPP 253 (434)
T ss_pred HHHHHHHHHHHHhcCceEEeCCCeeEEEEc-CCceEEEEeC----------------CceEECCEEEECCCHH
Confidence 357788899999999999999999999886 5666666543 2479999999999864
No 172
>PRK02106 choline dehydrogenase; Validated
Probab=95.73 E-value=0.026 Score=50.98 Aligned_cols=66 Identities=12% Similarity=0.146 Sum_probs=47.1
Q ss_pred HHHHHH-HCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcccchHHHhhcC
Q psy9486 73 LGEQAE-AMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLTKSLSSRFN 151 (165)
Q Consensus 73 L~~~A~-~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l~~~l~~~~g 151 (165)
++..|. ..+++|++++.|.+|+++ +++++||+..+ .++.. ..+.||.||+|.|+.. +.+|+..-|
T Consensus 206 ~l~~a~~~~nl~i~~~a~V~rI~~~-~~~a~GV~~~~----~~~~~-------~~~~ak~VILaaGai~--TP~LLl~SG 271 (560)
T PRK02106 206 YLDPALKRPNLTIVTHALTDRILFE-GKRAVGVEYER----GGGRE-------TARARREVILSAGAIN--SPQLLQLSG 271 (560)
T ss_pred hhccccCCCCcEEEcCCEEEEEEEe-CCeEEEEEEEe----CCcEE-------EEEeeeeEEEccCCCC--CHHHHhhcC
Confidence 344454 467999999999999997 68899999875 12211 3578999999999765 344444445
Q ss_pred C
Q psy9486 152 L 152 (165)
Q Consensus 152 l 152 (165)
+
T Consensus 272 I 272 (560)
T PRK02106 272 I 272 (560)
T ss_pred C
Confidence 4
No 173
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=95.72 E-value=0.07 Score=47.26 Aligned_cols=77 Identities=21% Similarity=0.249 Sum_probs=50.0
Q ss_pred HHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcccchHHHhhcCC
Q psy9486 73 LGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLTKSLSSRFNL 152 (165)
Q Consensus 73 L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l~~~l~~~~gl 152 (165)
..+.+++.||++++++.++++.-+ +++|++|+...+.. .+|.+...=....++.+|.||+|.|..... ..+.+.+|+
T Consensus 335 ~~~~~~~~GV~i~~~~~~~~i~~~-~g~v~~V~~~~~~~-~~g~~~~~~g~~~~i~~D~VI~A~G~~p~~-~~l~~~~gl 411 (471)
T PRK12810 335 EVSNAHEEGVEREFNVQTKEFEGE-NGKVTGVKVVRTEL-GEGDFEPVEGSEFVLPADLVLLAMGFTGPE-AGLLAQFGV 411 (471)
T ss_pred HHHHHHHcCCeEEeccCceEEEcc-CCEEEEEEEEEEEe-cCCCccccCCceEEEECCEEEECcCcCCCc-hhhccccCc
Confidence 567788899999999999999653 78999987653221 122111000012479999999999976542 223444554
No 174
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=95.64 E-value=0.052 Score=48.24 Aligned_cols=60 Identities=25% Similarity=0.278 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHCCCEEecCCceeEEEEcC--CC--cEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCc
Q psy9486 69 VVKWLGEQAEAMGVEIYPGIPASEVLYHG--DG--SVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG 140 (165)
Q Consensus 69 ~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~--~g--~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s 140 (165)
+.+-|.+..++.|++|+.+++|++|..++ ++ +|++|++.+ | ++ +.++.||.||+|+..+.
T Consensus 221 l~~pl~~~L~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~-g---~~--------~~~~~aD~VVlA~p~~~ 284 (474)
T TIGR02732 221 LTKPILEYIEARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSK-P---EG--------KKVIKADAYVAACDVPG 284 (474)
T ss_pred HHHHHHHHHHHCCCEEECCCEEEEEEEecCCCCceeEEEEEEec-C---Cc--------ceEEECCEEEECCChHH
Confidence 56667888888999999999999998853 23 378887753 0 11 13589999999999763
No 175
>KOG2852|consensus
Probab=95.58 E-value=0.032 Score=47.43 Aligned_cols=68 Identities=13% Similarity=0.176 Sum_probs=51.2
Q ss_pred cEEEEhHHHHHHHHHHHHHCC-CEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCC
Q psy9486 61 NYVVRLGHVVKWLGEQAEAMG-VEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH 139 (165)
Q Consensus 61 ~~~i~r~~~d~~L~~~A~~~G-v~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~ 139 (165)
.-++.-+.|+++++++|++.| |+++.+ .|.++. ++.+|+.+|--.+ ..+ +.....+..||+|.|.|
T Consensus 141 taqvhP~lFc~~i~sea~k~~~V~lv~G-kv~ev~-dEk~r~n~v~~ae----~~~-------ti~~~d~~~ivvsaGPW 207 (380)
T KOG2852|consen 141 TAQVHPYLFCHFILSEAEKRGGVKLVFG-KVKEVS-DEKHRINSVPKAE----AED-------TIIKADVHKIVVSAGPW 207 (380)
T ss_pred cceeCHHHHHHHHHHHHHhhcCeEEEEe-eeEEee-cccccccccchhh----hcC-------ceEEeeeeEEEEecCCC
Confidence 457899999999999999965 999887 688886 4467777764432 111 13467789999999999
Q ss_pred cc
Q psy9486 140 GH 141 (165)
Q Consensus 140 s~ 141 (165)
++
T Consensus 208 Ts 209 (380)
T KOG2852|consen 208 TS 209 (380)
T ss_pred ch
Confidence 73
No 176
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=95.52 E-value=0.11 Score=44.33 Aligned_cols=66 Identities=20% Similarity=0.215 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcccchHHHh
Q psy9486 69 VVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLTKSLSS 148 (165)
Q Consensus 69 ~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l~~~l~~ 148 (165)
+...+.+..++.|+++++++.+.++..+ ++. ..|.+.+ |.++.++.||+|+|..... .+.+
T Consensus 185 ~~~~l~~~l~~~gV~i~~~~~v~~i~~~-~~~-~~v~~~~---------------g~~i~~D~vI~a~G~~p~~--~l~~ 245 (377)
T PRK04965 185 VSSRLQHRLTEMGVHLLLKSQLQGLEKT-DSG-IRATLDS---------------GRSIEVDAVIAAAGLRPNT--ALAR 245 (377)
T ss_pred HHHHHHHHHHhCCCEEEECCeEEEEEcc-CCE-EEEEEcC---------------CcEEECCEEEECcCCCcch--HHHH
Confidence 4456677788899999999999999764 232 3455544 4589999999999987643 3555
Q ss_pred hcCCC
Q psy9486 149 RFNLR 153 (165)
Q Consensus 149 ~~gl~ 153 (165)
..|+.
T Consensus 246 ~~gl~ 250 (377)
T PRK04965 246 RAGLA 250 (377)
T ss_pred HCCCC
Confidence 56664
No 177
>PRK06116 glutathione reductase; Validated
Probab=95.50 E-value=0.073 Score=46.60 Aligned_cols=60 Identities=23% Similarity=0.299 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcccc
Q psy9486 68 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLT 143 (165)
Q Consensus 68 ~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l~ 143 (165)
.+.+.+.+..++.||+++++++|.++..++++.+ .|.+.+ |.++.++.||+|+|......
T Consensus 209 ~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~g~~-~v~~~~---------------g~~i~~D~Vv~a~G~~p~~~ 268 (450)
T PRK06116 209 DIRETLVEEMEKKGIRLHTNAVPKAVEKNADGSL-TLTLED---------------GETLTVDCLIWAIGREPNTD 268 (450)
T ss_pred HHHHHHHHHHHHCCcEEECCCEEEEEEEcCCceE-EEEEcC---------------CcEEEeCEEEEeeCCCcCCC
Confidence 3456677888899999999999999976534433 355543 35799999999999887664
No 178
>PRK07208 hypothetical protein; Provisional
Probab=95.50 E-value=0.064 Score=47.12 Aligned_cols=62 Identities=19% Similarity=0.245 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCc
Q psy9486 68 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG 140 (165)
Q Consensus 68 ~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s 140 (165)
.+...|.+.+++.|++|+++++|++|..++++.++++...+ .+|+. .++.||.||.|.-.+.
T Consensus 219 ~l~~~L~~~l~~~g~~i~~~~~V~~I~~~~~~~v~~~~~~~----~~g~~-------~~~~ad~VI~a~p~~~ 280 (479)
T PRK07208 219 QLWETAAEKLEALGGKVVLNAKVVGLHHDGDGRIAVVVVND----TDGTE-------ETVTADQVISSMPLRE 280 (479)
T ss_pred hHHHHHHHHHHHcCCEEEeCCEEEEEEEcCCcEEEEEEEEc----CCCCE-------EEEEcCEEEECCCHHH
Confidence 56778899999999999999999999997445455554432 12321 2689999999877553
No 179
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=95.27 E-value=0.12 Score=45.55 Aligned_cols=80 Identities=18% Similarity=0.144 Sum_probs=51.7
Q ss_pred HHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEcccc---ccCCCCCCCCCCc--CeEEEcCEEEEcccCCcccchHH
Q psy9486 72 WLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVG---IAKDGSPKDTFAR--GMELHAKVTIFAEGCHGHLTKSL 146 (165)
Q Consensus 72 ~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g---~~~~g~~~~~~~~--g~~i~Ak~VI~A~G~~s~l~~~l 146 (165)
+..+.+++.||+|++++.+.++.-+++|+|++|.+..+- -+.+|+..+...+ ...+.+|.||.|.|..... .+
T Consensus 314 ~~~~~l~~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~D~Vi~AiG~~p~~--~~ 391 (449)
T TIGR01316 314 EEIAHAEEEGVKFHFLCQPVEIIGDEEGNVRAVKFRKMDCQEQIDSGERRFLPCGDAECKLEADAVIVAIGNGSNP--IM 391 (449)
T ss_pred HHHHHHHhCCCEEEeccCcEEEEEcCCCeEEEEEEEEEEecCcCCCCCeeeeecCCceEEEECCEEEECCCCCCCc--hh
Confidence 345678899999999999999976556888888765210 1123321111111 2369999999999987643 34
Q ss_pred HhhcCCC
Q psy9486 147 SSRFNLR 153 (165)
Q Consensus 147 ~~~~gl~ 153 (165)
.+..|+.
T Consensus 392 l~~~gl~ 398 (449)
T TIGR01316 392 AETTRLK 398 (449)
T ss_pred hhccCcc
Confidence 4445553
No 180
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=95.24 E-value=0.13 Score=49.24 Aligned_cols=67 Identities=24% Similarity=0.345 Sum_probs=50.7
Q ss_pred HHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcccchHHHhh
Q psy9486 70 VKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLTKSLSSR 149 (165)
Q Consensus 70 d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l~~~l~~~ 149 (165)
...|.++.++.||+|++++.+++|.-+.++.+..|.+.+ |.++.+|.||+|.|..... .|.+.
T Consensus 190 ~~~l~~~L~~~GV~v~~~~~v~~I~~~~~~~~~~v~~~d---------------G~~i~~D~Vv~A~G~rPn~--~L~~~ 252 (847)
T PRK14989 190 GEQLRRKIESMGVRVHTSKNTLEIVQEGVEARKTMRFAD---------------GSELEVDFIVFSTGIRPQD--KLATQ 252 (847)
T ss_pred HHHHHHHHHHCCCEEEcCCeEEEEEecCCCceEEEEECC---------------CCEEEcCEEEECCCcccCc--hHHhh
Confidence 345677788899999999999999754234455666654 4689999999999988865 36666
Q ss_pred cCCC
Q psy9486 150 FNLR 153 (165)
Q Consensus 150 ~gl~ 153 (165)
.|+.
T Consensus 253 ~Gl~ 256 (847)
T PRK14989 253 CGLA 256 (847)
T ss_pred cCcc
Confidence 7764
No 181
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=95.22 E-value=0.12 Score=46.39 Aligned_cols=59 Identities=24% Similarity=0.210 Sum_probs=46.9
Q ss_pred EhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCc
Q psy9486 65 RLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG 140 (165)
Q Consensus 65 ~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s 140 (165)
+..++-++|.+.+++.|++++++++|.++..+ ++. ..|.+.+ |.++.|+.||+|+|+..
T Consensus 264 ~~~~l~~~l~~~~~~~gv~i~~~~~V~~I~~~-~~~-~~V~~~~---------------g~~i~a~~vViAtG~~~ 322 (517)
T PRK15317 264 EGPKLAAALEEHVKEYDVDIMNLQRASKLEPA-AGL-IEVELAN---------------GAVLKAKTVILATGARW 322 (517)
T ss_pred CHHHHHHHHHHHHHHCCCEEEcCCEEEEEEec-CCe-EEEEECC---------------CCEEEcCEEEECCCCCc
Confidence 45578889999999999999999999999875 232 3455543 35799999999999865
No 182
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=95.19 E-value=0.11 Score=41.95 Aligned_cols=60 Identities=30% Similarity=0.334 Sum_probs=45.3
Q ss_pred EEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcc
Q psy9486 64 VRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH 141 (165)
Q Consensus 64 i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~ 141 (165)
++...+-..+.+.+++.|+++++ +.|.++..+ ++. ..|.+.+ +.++++|.+|+|+|.+..
T Consensus 54 ~~~~~~~~~l~~~~~~~gv~~~~-~~v~~v~~~-~~~-~~v~~~~---------------~~~~~~d~liiAtG~~~~ 113 (300)
T TIGR01292 54 ISGPELMEKMKEQAVKFGAEIIY-EEVIKVDLS-DRP-FKVKTGD---------------GKEYTAKAVIIATGASAR 113 (300)
T ss_pred CChHHHHHHHHHHHHHcCCeEEE-EEEEEEEec-CCe-eEEEeCC---------------CCEEEeCEEEECCCCCcc
Confidence 44457778889999999999998 889988764 332 3355543 347999999999998753
No 183
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=95.16 E-value=0.11 Score=48.01 Aligned_cols=68 Identities=26% Similarity=0.332 Sum_probs=46.9
Q ss_pred HHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccc--c-ccCCCCCCCCCCcC--eEEEcCEEEEcccCCcc
Q psy9486 74 GEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDV--G-IAKDGSPKDTFARG--MELHAKVTIFAEGCHGH 141 (165)
Q Consensus 74 ~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~--g-~~~~g~~~~~~~~g--~~i~Ak~VI~A~G~~s~ 141 (165)
...|++.||+|++.+.++++..+++|+|.+|++..+ | -|.+|+..+...+| ..+.||.||+|.|....
T Consensus 496 ~~~a~~eGv~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~aD~Vi~AiG~~p~ 568 (639)
T PRK12809 496 VVNAREEGVEFQFNVQPQYIACDEDGRLTAVGLIRTAMGEPGPDGRRRPRPVAGSEFELPADVLIMAFGFQAH 568 (639)
T ss_pred HHHHHHcCCeEEeccCCEEEEECCCCeEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECcCCCCC
Confidence 456788999999999999998765788998865322 1 12345432222223 36899999999996653
No 184
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=95.11 E-value=0.12 Score=45.23 Aligned_cols=70 Identities=17% Similarity=0.175 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcccchHHH
Q psy9486 68 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLTKSLS 147 (165)
Q Consensus 68 ~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l~~~l~ 147 (165)
.+...+.+..++.|+++++++.|.++..+ ++.+. +.+.+ |.. .++.+|.||+|+|........+.
T Consensus 212 ~~~~~~~~~l~~~gi~i~~~~~v~~i~~~-~~~v~-v~~~~------g~~-------~~i~~D~vi~a~G~~p~~~~l~~ 276 (461)
T TIGR01350 212 EVSKVVAKALKKKGVKILTNTKVTAVEKN-DDQVV-YENKG------GET-------ETLTGEKVLVAVGRKPNTEGLGL 276 (461)
T ss_pred HHHHHHHHHHHHcCCEEEeCCEEEEEEEe-CCEEE-EEEeC------CcE-------EEEEeCEEEEecCCcccCCCCCc
Confidence 45667778888999999999999999775 44443 44432 210 37999999999999887643233
Q ss_pred hhcCC
Q psy9486 148 SRFNL 152 (165)
Q Consensus 148 ~~~gl 152 (165)
+..++
T Consensus 277 ~~~gl 281 (461)
T TIGR01350 277 ENLGV 281 (461)
T ss_pred HhhCc
Confidence 44554
No 185
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=95.03 E-value=0.15 Score=48.23 Aligned_cols=65 Identities=18% Similarity=0.236 Sum_probs=49.5
Q ss_pred HHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcccchHHHhh
Q psy9486 70 VKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLTKSLSSR 149 (165)
Q Consensus 70 d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l~~~l~~~ 149 (165)
..++.+..++.||++++++.++++.- ++++.+|.+.+ |.++.+|.||.|.|..... .+.+.
T Consensus 185 ~~~l~~~l~~~GV~v~~~~~v~~i~~--~~~~~~v~~~d---------------G~~i~~D~Vi~a~G~~Pn~--~la~~ 245 (785)
T TIGR02374 185 GRLLQRELEQKGLTFLLEKDTVEIVG--ATKADRIRFKD---------------GSSLEADLIVMAAGIRPND--ELAVS 245 (785)
T ss_pred HHHHHHHHHHcCCEEEeCCceEEEEc--CCceEEEEECC---------------CCEEEcCEEEECCCCCcCc--HHHHh
Confidence 44567777889999999999999864 45677787765 4589999999999988754 34455
Q ss_pred cCCC
Q psy9486 150 FNLR 153 (165)
Q Consensus 150 ~gl~ 153 (165)
.||.
T Consensus 246 ~gl~ 249 (785)
T TIGR02374 246 AGIK 249 (785)
T ss_pred cCCc
Confidence 6654
No 186
>PRK12831 putative oxidoreductase; Provisional
Probab=94.99 E-value=0.12 Score=45.90 Aligned_cols=69 Identities=20% Similarity=0.189 Sum_probs=47.7
Q ss_pred HHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccc---cccCCCCCCCCCCcC--eEEEcCEEEEcccCCccc
Q psy9486 74 GEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDV---GIAKDGSPKDTFARG--MELHAKVTIFAEGCHGHL 142 (165)
Q Consensus 74 ~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~---g~~~~g~~~~~~~~g--~~i~Ak~VI~A~G~~s~l 142 (165)
.+.|++.||+|++.+.+.+++.+++|+|.+|++..+ ..|.+|...+...+| .++.||.||+|.|.....
T Consensus 325 ~~~a~~eGV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~d~~Gr~~~~~~~g~~~~i~~D~Vi~AiG~~p~~ 398 (464)
T PRK12831 325 VHHAKEEGVIFDLLTNPVEILGDENGWVKGMKCIKMELGEPDASGRRRPVEIEGSEFVLEVDTVIMSLGTSPNP 398 (464)
T ss_pred HHHHHHcCCEEEecccceEEEecCCCeEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECCCCCCCh
Confidence 346778999999999999998765789999876532 122344322211122 269999999999987654
No 187
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=94.97 E-value=0.035 Score=50.72 Aligned_cols=65 Identities=29% Similarity=0.445 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHH-CCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486 68 HVVKWLGEQAEA-MGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL 142 (165)
Q Consensus 68 ~~d~~L~~~A~~-~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l 142 (165)
.+...|.+++.+ .+++|+....+.+++.++++.|.||..-+. .+|+. ..++||.||+|+|..+.+
T Consensus 139 ~ll~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~Gvv~~~~---~~g~~-------~~~~akavilaTGG~g~~ 204 (562)
T COG1053 139 ELLHTLYEQLLKFSGIEIFDEYFVLDLLVDDGGGVAGVVARDL---RTGEL-------YVFRAKAVILATGGAGRL 204 (562)
T ss_pred HHHHHHHHHHHHhhcchhhhhhhhhhheecCCCcEEEEEEEEe---cCCcE-------EEEecCcEEEccCCceEE
Confidence 467899999999 788999999999999875556899877653 24443 468899999999999843
No 188
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=94.96 E-value=0.067 Score=44.48 Aligned_cols=65 Identities=29% Similarity=0.347 Sum_probs=49.6
Q ss_pred CCcEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccC
Q psy9486 59 HGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGC 138 (165)
Q Consensus 59 ~~~~~i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~ 138 (165)
.+++.+..+.+...+...+...|.+|+++++|++|..+ +++|. |.+.+ |..+.||.||.|...
T Consensus 201 ~~~~~~~~g~~~~~~~~~~~~~g~~i~l~~~V~~I~~~-~~~v~-v~~~~---------------g~~~~ad~VI~a~p~ 263 (450)
T PF01593_consen 201 FGGLTVGMGGLSLALALAAEELGGEIRLNTPVTRIERE-DGGVT-VTTED---------------GETIEADAVISAVPP 263 (450)
T ss_dssp SSTEEEETTTTHHHHHHHHHHHGGGEESSEEEEEEEEE-SSEEE-EEETT---------------SSEEEESEEEE-S-H
T ss_pred ccceeecccchhHHHHHHHhhcCceeecCCcceecccc-ccccc-ccccc---------------ceEEecceeeecCch
Confidence 44677777777778888888889999999999999997 56654 56654 358999999999885
Q ss_pred Cc
Q psy9486 139 HG 140 (165)
Q Consensus 139 ~s 140 (165)
..
T Consensus 264 ~~ 265 (450)
T PF01593_consen 264 SV 265 (450)
T ss_dssp HH
T ss_pred hh
Confidence 53
No 189
>PLN02487 zeta-carotene desaturase
Probab=94.94 E-value=0.11 Score=47.60 Aligned_cols=60 Identities=18% Similarity=0.189 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHCCCEEecCCceeEEEEcC--CC--cEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCc
Q psy9486 69 VVKWLGEQAEAMGVEIYPGIPASEVLYHG--DG--SVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG 140 (165)
Q Consensus 69 ~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~--~g--~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s 140 (165)
|..-+.+..++.|++|+++++|.+|..+. ++ +|+||++.+ +++ +..+.||.||.|.+.+.
T Consensus 297 l~~pl~~~L~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~-----~~~-------~~~~~aD~VV~A~p~~~ 360 (569)
T PLN02487 297 LSGPIAKYITDRGGRFHLRWGCREILYDKSPDGETYVTGLKVSK-----ATE-------KEIVKADAYVAACDVPG 360 (569)
T ss_pred HHHHHHHHHHHcCCEEEeCCceEEEEEecCCCCceeEEEEEEec-----CCC-------ceEEECCEEEECCCHHH
Confidence 45566788889999999999999999863 23 488998831 111 24689999999999874
No 190
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=94.93 E-value=0.21 Score=43.02 Aligned_cols=66 Identities=23% Similarity=0.293 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcccchHHH
Q psy9486 68 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLTKSLS 147 (165)
Q Consensus 68 ~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l~~~l~ 147 (165)
.+..++.+..++.||++++++.++++.. ++. +.|.+.+ |..+.|+.||.|.|..... .+.
T Consensus 187 ~~~~~l~~~l~~~GV~i~~~~~V~~i~~--~~~-~~v~l~~---------------g~~i~aD~Vv~a~G~~pn~--~l~ 246 (396)
T PRK09754 187 PVQRYLLQRHQQAGVRILLNNAIEHVVD--GEK-VELTLQS---------------GETLQADVVIYGIGISAND--QLA 246 (396)
T ss_pred HHHHHHHHHHHHCCCEEEeCCeeEEEEc--CCE-EEEEECC---------------CCEEECCEEEECCCCChhh--HHH
Confidence 3456678888899999999999999854 233 3455554 3579999999999987753 455
Q ss_pred hhcCCC
Q psy9486 148 SRFNLR 153 (165)
Q Consensus 148 ~~~gl~ 153 (165)
+..|+.
T Consensus 247 ~~~gl~ 252 (396)
T PRK09754 247 REANLD 252 (396)
T ss_pred HhcCCC
Confidence 566764
No 191
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=94.84 E-value=0.094 Score=44.48 Aligned_cols=56 Identities=14% Similarity=0.162 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCc
Q psy9486 69 VVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG 140 (165)
Q Consensus 69 ~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s 140 (165)
+.+.|++.+++.|++|+++++|++|..+ +++|..+.+.+ |..+.||.||.|.-...
T Consensus 199 ~~~~l~~~l~~~g~~i~~~~~V~~i~~~-~~~~~~~~~~~---------------g~~~~~d~vi~a~p~~~ 254 (419)
T TIGR03467 199 FPEPARRWLDSRGGEVRLGTRVRSIEAN-AGGIRALVLSG---------------GETLPADAVVLAVPPRH 254 (419)
T ss_pred HHHHHHHHHHHcCCEEEcCCeeeEEEEc-CCcceEEEecC---------------CccccCCEEEEcCCHHH
Confidence 3444777788889999999999999986 45444332222 24689999999876543
No 192
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=94.80 E-value=0.17 Score=44.96 Aligned_cols=70 Identities=26% Similarity=0.281 Sum_probs=47.3
Q ss_pred HHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccc--c-ccCCCCCCCCCCc--CeEEEcCEEEEcccCCcc
Q psy9486 72 WLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDV--G-IAKDGSPKDTFAR--GMELHAKVTIFAEGCHGH 141 (165)
Q Consensus 72 ~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~--g-~~~~g~~~~~~~~--g~~i~Ak~VI~A~G~~s~ 141 (165)
...+++++.||++++++.+.++..+++|+|++|++..+ | .|.+|...+.+.+ ...+.+|.||+|.|....
T Consensus 325 ~e~~~~~~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~~D~Vi~a~G~~p~ 399 (467)
T TIGR01318 325 REVANAREEGVEFLFNVQPVYIECDEDGRVTGVGLVRTALGEPDADGRRRPVPVAGSEFVLPADVVIMAFGFQPH 399 (467)
T ss_pred HHHHHHHhcCCEEEecCCcEEEEECCCCeEEEEEEEEEEecccCCCCCccceecCCceEEEECCEEEECCcCCCC
Confidence 35567888999999999999997755678888865321 1 1233432111111 246999999999997764
No 193
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=94.61 E-value=0.082 Score=48.17 Aligned_cols=62 Identities=11% Similarity=0.202 Sum_probs=43.6
Q ss_pred HCC-CEEecCCceeEEEEcCC--CcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcccchHHHhhcCC
Q psy9486 79 AMG-VEIYPGIPASEVLYHGD--GSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLTKSLSSRFNL 152 (165)
Q Consensus 79 ~~G-v~i~~~~~v~~i~~~~~--g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l~~~l~~~~gl 152 (165)
+.| ++|++++.|.+|.++++ ++|.||...+. .+|+. .+++||.||+|.|+-- +-+|+-..+.
T Consensus 225 ~~~n~~l~~~a~v~~i~~d~~~~~~v~~v~~~d~---~~g~~-------~~v~A~~vVLAagaIe--tpRLLL~S~~ 289 (544)
T TIGR02462 225 PSERFTLLTNHRCTRLVRNETNESEIEAALVRDL---LSGDR-------FEIKADVYVLACGAVH--NPQILVNSGF 289 (544)
T ss_pred cCCCEEEEcCCEEEEEEeCCCCCceeEEEEEEEC---CCCcE-------EEEECCEEEEccCchh--hHHHHHhCCC
Confidence 344 99999999999999754 47999877652 13432 4799999999999554 3344433333
No 194
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=94.42 E-value=0.043 Score=46.96 Aligned_cols=71 Identities=20% Similarity=0.297 Sum_probs=48.4
Q ss_pred cEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCC--cEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccC
Q psy9486 61 NYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDG--SVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGC 138 (165)
Q Consensus 61 ~~~i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g--~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~ 138 (165)
.+..+|.+|.++|.-.|++..-++.++.+|++|..+.++ ...-|.+.+ .+|. +..+.|+.||+|+|.
T Consensus 89 ~~~p~R~ef~dYl~Wva~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~----~~g~-------~~~~~ar~vVla~G~ 157 (341)
T PF13434_consen 89 YFFPSRREFNDYLRWVAEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRD----SDGD-------GETYRARNVVLATGG 157 (341)
T ss_dssp -SS-BHHHHHHHHHHHHCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEE----TTS--------EEEEEESEEEE----
T ss_pred CCCCCHHHHHHHHHHHHHhCCCceEECCEEEEEEEecCCCccEEEEEEee----cCCC-------eeEEEeCeEEECcCC
Confidence 355899999999999999998779999999999886433 355677743 2332 358999999999996
Q ss_pred Cccc
Q psy9486 139 HGHL 142 (165)
Q Consensus 139 ~s~l 142 (165)
...+
T Consensus 158 ~P~i 161 (341)
T PF13434_consen 158 QPRI 161 (341)
T ss_dssp EE--
T ss_pred CCCC
Confidence 6544
No 195
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=94.23 E-value=0.27 Score=44.11 Aligned_cols=59 Identities=20% Similarity=0.212 Sum_probs=46.0
Q ss_pred EhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCc
Q psy9486 65 RLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG 140 (165)
Q Consensus 65 ~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s 140 (165)
...++.++|.+.+++.|++++.+++|.++..+ ++. ..|.+.+ |..+.++.+|+|+|+..
T Consensus 265 ~~~~l~~~l~~~l~~~gv~i~~~~~V~~I~~~-~~~-~~v~~~~---------------g~~i~~d~lIlAtGa~~ 323 (515)
T TIGR03140 265 TGSQLAANLEEHIKQYPIDLMENQRAKKIETE-DGL-IVVTLES---------------GEVLKAKSVIVATGARW 323 (515)
T ss_pred CHHHHHHHHHHHHHHhCCeEEcCCEEEEEEec-CCe-EEEEECC---------------CCEEEeCEEEECCCCCc
Confidence 45678888899999999999999999999764 332 3455543 34799999999999874
No 196
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=94.13 E-value=0.18 Score=43.34 Aligned_cols=58 Identities=16% Similarity=0.173 Sum_probs=42.9
Q ss_pred CcEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCC
Q psy9486 60 GNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH 139 (165)
Q Consensus 60 ~~~~i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~ 139 (165)
..+.|.|..|.+.|.+++.+ + ++.+++|.++ +. + +|.+.+ |.++.|+.||+|+|.+
T Consensus 82 ~Y~~I~r~~f~~~l~~~l~~-~--i~~~~~V~~v--~~-~---~v~l~d---------------g~~~~A~~VI~A~G~~ 137 (370)
T TIGR01789 82 AYRSMTSTRFHEGLLQAFPE-G--VILGRKAVGL--DA-D---GVDLAP---------------GTRINARSVIDCRGFK 137 (370)
T ss_pred CceEEEHHHHHHHHHHhhcc-c--EEecCEEEEE--eC-C---EEEECC---------------CCEEEeeEEEECCCCC
Confidence 34789999999999765543 3 7778899988 32 3 244443 4589999999999988
Q ss_pred cc
Q psy9486 140 GH 141 (165)
Q Consensus 140 s~ 141 (165)
+.
T Consensus 138 s~ 139 (370)
T TIGR01789 138 PS 139 (370)
T ss_pred CC
Confidence 63
No 197
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=94.08 E-value=0.26 Score=43.12 Aligned_cols=58 Identities=21% Similarity=0.245 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486 68 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL 142 (165)
Q Consensus 68 ~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l 142 (165)
.+...|.+..++.|+++++++.|+++..+ ++.+ .+.+.+ |.++.++.||+|.|.....
T Consensus 217 ~~~~~l~~~l~~~gI~v~~~~~v~~i~~~-~~~~-~v~~~~---------------g~~i~~D~vi~a~G~~p~~ 274 (461)
T PRK05249 217 EISDALSYHLRDSGVTIRHNEEVEKVEGG-DDGV-IVHLKS---------------GKKIKADCLLYANGRTGNT 274 (461)
T ss_pred HHHHHHHHHHHHcCCEEEECCEEEEEEEe-CCeE-EEEECC---------------CCEEEeCEEEEeecCCccc
Confidence 34456778888899999999999999764 3332 244432 3479999999999998765
No 198
>KOG1336|consensus
Probab=93.92 E-value=0.19 Score=45.02 Aligned_cols=58 Identities=24% Similarity=0.355 Sum_probs=48.8
Q ss_pred HHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486 70 VKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL 142 (165)
Q Consensus 70 d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l 142 (165)
-+.+.+.-++.||+++.++.+.++..+.+|+|+-|.+.+ |.++.|+.||...|+....
T Consensus 258 ~~~~~~y~e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~d---------------g~~l~adlvv~GiG~~p~t 315 (478)
T KOG1336|consen 258 GQFYEDYYENKGVKFYLGTVVSSLEGNSDGEVSEVKLKD---------------GKTLEADLVVVGIGIKPNT 315 (478)
T ss_pred HHHHHHHHHhcCeEEEEecceeecccCCCCcEEEEEecc---------------CCEeccCeEEEeecccccc
Confidence 344555667889999999999999887789999999987 5689999999999987644
No 199
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=93.70 E-value=0.46 Score=41.94 Aligned_cols=62 Identities=19% Similarity=0.265 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486 68 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL 142 (165)
Q Consensus 68 ~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l 142 (165)
.+.+.+.+..++.|+++++++.|+++..++++++..+.+.+ |+. .++.+|.||+|.|.....
T Consensus 222 ~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~~~~~~~~~~~------g~~-------~~i~~D~vi~a~G~~p~~ 283 (472)
T PRK05976 222 ELSKEVARLLKKLGVRVVTGAKVLGLTLKKDGGVLIVAEHN------GEE-------KTLEADKVLVSVGRRPNT 283 (472)
T ss_pred HHHHHHHHHHHhcCCEEEeCcEEEEEEEecCCCEEEEEEeC------Cce-------EEEEeCEEEEeeCCccCC
Confidence 34556677778899999999999999752134444444432 211 369999999999998765
No 200
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=93.61 E-value=0.48 Score=41.06 Aligned_cols=65 Identities=14% Similarity=0.150 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcccchHHH
Q psy9486 68 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLTKSLS 147 (165)
Q Consensus 68 ~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l~~~l~ 147 (165)
.+...+.+..++.||++++++.|.++.- ++.+ +.+.+ |.++.+|.||.|+|..... .+.
T Consensus 180 ~~~~~~~~~l~~~gV~v~~~~~v~~i~~--~~~~--v~~~~---------------g~~i~~D~vi~a~G~~p~~--~~l 238 (427)
T TIGR03385 180 EMNQIVEEELKKHEINLRLNEEVDSIEG--EERV--KVFTS---------------GGVYQADMVILATGIKPNS--ELA 238 (427)
T ss_pred HHHHHHHHHHHHcCCEEEeCCEEEEEec--CCCE--EEEcC---------------CCEEEeCEEEECCCccCCH--HHH
Confidence 4556677788889999999999999854 3443 34433 3579999999999988643 345
Q ss_pred hhcCCC
Q psy9486 148 SRFNLR 153 (165)
Q Consensus 148 ~~~gl~ 153 (165)
+..|+.
T Consensus 239 ~~~gl~ 244 (427)
T TIGR03385 239 KDSGLK 244 (427)
T ss_pred HhcCcc
Confidence 556654
No 201
>PRK06370 mercuric reductase; Validated
Probab=93.40 E-value=0.49 Score=41.61 Aligned_cols=61 Identities=20% Similarity=0.224 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486 68 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL 142 (165)
Q Consensus 68 ~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l 142 (165)
.+.+.+.+..++.||++++++.|.++..++++. .|.+.. .++ +.++.+|.||+|.|.....
T Consensus 213 ~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~~--~v~~~~----~~~--------~~~i~~D~Vi~A~G~~pn~ 273 (463)
T PRK06370 213 DVAAAVREILEREGIDVRLNAECIRVERDGDGI--AVGLDC----NGG--------APEITGSHILVAVGRVPNT 273 (463)
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEE--EEEEEe----CCC--------ceEEEeCEEEECcCCCcCC
Confidence 355677788888999999999999997643232 233321 011 2479999999999988765
No 202
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=93.40 E-value=0.45 Score=42.56 Aligned_cols=59 Identities=25% Similarity=0.301 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486 68 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL 142 (165)
Q Consensus 68 ~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l 142 (165)
.+.+.+.+..++.|+++++++.++++..++++ ...|.+.+ +.++.++.||.|+|.....
T Consensus 232 ~~~~~l~~~L~~~GI~i~~~~~v~~i~~~~~~-~~~v~~~~---------------g~~i~~D~vl~a~G~~Pn~ 290 (486)
T TIGR01423 232 TLRKELTKQLRANGINIMTNENPAKVTLNADG-SKHVTFES---------------GKTLDVDVVMMAIGRVPRT 290 (486)
T ss_pred HHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCc-eEEEEEcC---------------CCEEEcCEEEEeeCCCcCc
Confidence 34456667778899999999999999764333 34455543 3479999999999988765
No 203
>PLN02785 Protein HOTHEAD
Probab=93.25 E-value=0.27 Score=45.17 Aligned_cols=64 Identities=11% Similarity=0.240 Sum_probs=44.2
Q ss_pred hHHHHHHHHHHHHHCCCEEecCCceeEEEEcCC---CcEEEEEEccccccCCCCCCCCCCcCeEE----EcCEEEEcccC
Q psy9486 66 LGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGD---GSVKGIATGDVGIAKDGSPKDTFARGMEL----HAKVTIFAEGC 138 (165)
Q Consensus 66 r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~---g~V~GV~~~~~g~~~~g~~~~~~~~g~~i----~Ak~VI~A~G~ 138 (165)
|..... |...+...+++|++++.|++|+++++ ++++||+..+ .+|... ..+ .++-||+|+|+
T Consensus 220 R~saa~-l~~~~~~~nl~Vl~~a~V~rIl~~~~~~~~ra~GV~~~~----~~g~~~------~~~~~~~~~~eVILsAGa 288 (587)
T PLN02785 220 RHTAAE-LLAAGNPNKLRVLLHATVQKIVFDTSGKRPRATGVIFKD----ENGNQH------QAFLSNNKGSEIILSAGA 288 (587)
T ss_pred EcCHHH-HHhhcCCCCeEEEeCCEEEEEEEcCCCCCceEEEEEEEE----CCCceE------EEEeecccCceEEecccc
Confidence 444444 34566668899999999999999743 3899999865 344321 112 24889999997
Q ss_pred Cc
Q psy9486 139 HG 140 (165)
Q Consensus 139 ~s 140 (165)
-.
T Consensus 289 i~ 290 (587)
T PLN02785 289 IG 290 (587)
T ss_pred cC
Confidence 55
No 204
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=93.17 E-value=0.44 Score=43.19 Aligned_cols=59 Identities=19% Similarity=0.289 Sum_probs=44.5
Q ss_pred EEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcc
Q psy9486 64 VRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH 141 (165)
Q Consensus 64 i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~ 141 (165)
++...+.+++.+.+++.|++++ .+.|..+..+ +.+..|.+.+ .++.++.+|+|+|++..
T Consensus 57 ~~~~~l~~~l~~~~~~~gv~~~-~~~V~~i~~~--~~~~~V~~~~----------------g~~~a~~lVlATGa~p~ 115 (555)
T TIGR03143 57 TTGPELMQEMRQQAQDFGVKFL-QAEVLDVDFD--GDIKTIKTAR----------------GDYKTLAVLIATGASPR 115 (555)
T ss_pred CCHHHHHHHHHHHHHHcCCEEe-ccEEEEEEec--CCEEEEEecC----------------CEEEEeEEEECCCCccC
Confidence 3456788899999999999986 5678888764 3444566643 26899999999999864
No 205
>PRK14694 putative mercuric reductase; Provisional
Probab=93.02 E-value=0.57 Score=41.35 Aligned_cols=58 Identities=22% Similarity=0.180 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcccc
Q psy9486 68 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLT 143 (165)
Q Consensus 68 ~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l~ 143 (165)
.+...+.+..++.||++++++.|.++..+ ++. +.+.+.+ .++.++.||+|.|......
T Consensus 219 ~~~~~l~~~l~~~GI~v~~~~~v~~i~~~-~~~-~~v~~~~----------------~~i~~D~vi~a~G~~pn~~ 276 (468)
T PRK14694 219 AVGEAIEAAFRREGIEVLKQTQASEVDYN-GRE-FILETNA----------------GTLRAEQLLVATGRTPNTE 276 (468)
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEEc-CCE-EEEEECC----------------CEEEeCEEEEccCCCCCcC
Confidence 56677888888899999999999999764 332 2344432 3699999999999988663
No 206
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=92.87 E-value=0.45 Score=40.26 Aligned_cols=58 Identities=29% Similarity=0.342 Sum_probs=45.8
Q ss_pred EEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCc
Q psy9486 64 VRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG 140 (165)
Q Consensus 64 i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s 140 (165)
++-..+.+-+.++|+..|+++.. ..|..+... +...-|+|.+ + +++||.||+|+|+..
T Consensus 58 ~~g~~L~~~~~~~a~~~~~~~~~-~~v~~v~~~--~~~F~v~t~~---------------~-~~~ak~vIiAtG~~~ 115 (305)
T COG0492 58 ILGPELMEQMKEQAEKFGVEIVE-DEVEKVELE--GGPFKVKTDK---------------G-TYEAKAVIIATGAGA 115 (305)
T ss_pred CchHHHHHHHHHHHhhcCeEEEE-EEEEEEeec--CceEEEEECC---------------C-eEEEeEEEECcCCcc
Confidence 56677888889999999999988 677777553 2155677775 3 599999999999886
No 207
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=92.79 E-value=0.76 Score=34.53 Aligned_cols=61 Identities=16% Similarity=0.296 Sum_probs=40.6
Q ss_pred cEEEEhHHHHHHHHHHHHH------CCCEEe-cCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEE
Q psy9486 61 NYVVRLGHVVKWLGEQAEA------MGVEIY-PGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTI 133 (165)
Q Consensus 61 ~~~i~r~~~d~~L~~~A~~------~Gv~i~-~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI 133 (165)
.--.+|..|.++|.+..++ .|++|. ...+|++|...+++ .-|.+.+ |..+.|+.||
T Consensus 88 ~~f~pR~~~G~YL~~~~~~~~~~~~~~i~v~~~~~~V~~i~~~~~~--~~v~~~~---------------g~~~~~d~Vv 150 (156)
T PF13454_consen 88 DDFPPRALFGEYLRDRFDRLLARLPAGITVRHVRAEVVDIRRDDDG--YRVVTAD---------------GQSIRADAVV 150 (156)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHhhcCCcEEEEEeeEEEEEEEcCCc--EEEEECC---------------CCEEEeCEEE
Confidence 3457788777776655544 354443 34588888876444 2455554 4689999999
Q ss_pred EcccC
Q psy9486 134 FAEGC 138 (165)
Q Consensus 134 ~A~G~ 138 (165)
+|+|.
T Consensus 151 La~Gh 155 (156)
T PF13454_consen 151 LATGH 155 (156)
T ss_pred ECCCC
Confidence 99995
No 208
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=92.77 E-value=0.63 Score=41.14 Aligned_cols=59 Identities=17% Similarity=0.178 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcccc
Q psy9486 68 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLT 143 (165)
Q Consensus 68 ~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l~ 143 (165)
.+...+.+..++.||++++++.+.++..+ ++.+. |.+.+ |.++.++.||+|.|......
T Consensus 219 ~~~~~l~~~L~~~gV~i~~~~~v~~v~~~-~~~~~-v~~~~---------------g~~l~~D~vl~a~G~~pn~~ 277 (466)
T PRK07845 219 DAAEVLEEVFARRGMTVLKRSRAESVERT-GDGVV-VTLTD---------------GRTVEGSHALMAVGSVPNTA 277 (466)
T ss_pred HHHHHHHHHHHHCCcEEEcCCEEEEEEEe-CCEEE-EEECC---------------CcEEEecEEEEeecCCcCCC
Confidence 34456667777899999999999999764 34332 44433 35799999999999987653
No 209
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=92.76 E-value=0.39 Score=31.87 Aligned_cols=39 Identities=31% Similarity=0.422 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEcc
Q psy9486 68 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGD 108 (165)
Q Consensus 68 ~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~ 108 (165)
.+-.++.+..++.||++++++.++++..++++ +. |++.+
T Consensus 41 ~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~-~~-V~~~~ 79 (80)
T PF00070_consen 41 DAAKILEEYLRKRGVEVHTNTKVKEIEKDGDG-VE-VTLED 79 (80)
T ss_dssp HHHHHHHHHHHHTTEEEEESEEEEEEEEETTS-EE-EEEET
T ss_pred HHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCE-EE-EEEec
Confidence 34556778888899999999999999987556 66 87764
No 210
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=92.72 E-value=0.53 Score=44.23 Aligned_cols=68 Identities=19% Similarity=0.260 Sum_probs=46.4
Q ss_pred HHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccc--c-ccCCCCCCCCCCcC--eEEEcCEEEEcccCCccc
Q psy9486 75 EQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDV--G-IAKDGSPKDTFARG--MELHAKVTIFAEGCHGHL 142 (165)
Q Consensus 75 ~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~--g-~~~~g~~~~~~~~g--~~i~Ak~VI~A~G~~s~l 142 (165)
+.+++.||+|++.+.+.+++.+++|+|++|++..+ + -|.+|+..+-..+| .++.||.||.|.|.....
T Consensus 616 ~~~~~~GV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~A~G~~p~~ 688 (752)
T PRK12778 616 KHAKEEGIEFLTLHNPIEYLADEKGWVKQVVLQKMELGEPDASGRRRPVAIPGSTFTVDVDLVIVSVGVSPNP 688 (752)
T ss_pred HHHHHcCCEEEecCcceEEEECCCCEEEEEEEEEEEecCcCCCCCCCceecCCCeEEEECCEEEECcCCCCCc
Confidence 56788999999999999998765788999876422 1 11234321111112 359999999999987653
No 211
>KOG2614|consensus
Probab=92.65 E-value=0.11 Score=45.78 Aligned_cols=26 Identities=19% Similarity=0.303 Sum_probs=22.5
Q ss_pred CeEEEcCEEEEcccCCcccchHHHhh
Q psy9486 124 GMELHAKVTIFAEGCHGHLTKSLSSR 149 (165)
Q Consensus 124 g~~i~Ak~VI~A~G~~s~l~~~l~~~ 149 (165)
|.++++|++|.|+|++|.+++.|..+
T Consensus 147 g~~~~~dlligCDGa~S~Vr~~l~~~ 172 (420)
T KOG2614|consen 147 GTTVKGDLLIGCDGAYSKVRKWLGFK 172 (420)
T ss_pred CcEEEeeEEEEcCchHHHHHHHhccc
Confidence 57899999999999999998885444
No 212
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=92.64 E-value=0.49 Score=41.47 Aligned_cols=58 Identities=24% Similarity=0.379 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486 68 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL 142 (165)
Q Consensus 68 ~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l 142 (165)
.+...+.+..++.||++++++.|+++..++++ ..|.+.+ |.++.++.||+|.|.....
T Consensus 208 ~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~--~~v~~~~---------------g~~i~~D~viva~G~~pn~ 265 (446)
T TIGR01424 208 DMRALLARNMEGRGIRIHPQTSLTSITKTDDG--LKVTLSH---------------GEEIVADVVLFATGRSPNT 265 (446)
T ss_pred HHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCe--EEEEEcC---------------CcEeecCEEEEeeCCCcCC
Confidence 34445667778899999999999999764333 2344433 3579999999999988755
No 213
>KOG1346|consensus
Probab=92.64 E-value=0.18 Score=45.12 Aligned_cols=69 Identities=20% Similarity=0.274 Sum_probs=52.5
Q ss_pred hHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcccchH
Q psy9486 66 LGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLTKS 145 (165)
Q Consensus 66 r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l~~~ 145 (165)
-..+-+|-.++.++-||.++.+..|..+... .+.++ ++..+ |++++.|+||+|.|..... .
T Consensus 392 Peyls~wt~ekir~~GV~V~pna~v~sv~~~-~~nl~-lkL~d---------------G~~l~tD~vVvavG~ePN~--e 452 (659)
T KOG1346|consen 392 PEYLSQWTIEKIRKGGVDVRPNAKVESVRKC-CKNLV-LKLSD---------------GSELRTDLVVVAVGEEPNS--E 452 (659)
T ss_pred HHHHHHHHHHHHHhcCceeccchhhhhhhhh-ccceE-EEecC---------------CCeeeeeeEEEEecCCCch--h
Confidence 3456788899999999999999999999875 34433 67766 6899999999999986543 4
Q ss_pred HHhhcCCC
Q psy9486 146 LSSRFNLR 153 (165)
Q Consensus 146 l~~~~gl~ 153 (165)
|.+.-||.
T Consensus 453 la~~sgLe 460 (659)
T KOG1346|consen 453 LAEASGLE 460 (659)
T ss_pred hcccccce
Confidence 44445553
No 214
>PRK13748 putative mercuric reductase; Provisional
Probab=92.59 E-value=0.58 Score=42.05 Aligned_cols=56 Identities=27% Similarity=0.283 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486 69 VVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL 142 (165)
Q Consensus 69 ~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l 142 (165)
+-..+.+..++.|++|++++.|+++..+ ++.+ .+.+.+ .++.++.||+|.|.....
T Consensus 312 ~~~~l~~~l~~~gI~i~~~~~v~~i~~~-~~~~-~v~~~~----------------~~i~~D~vi~a~G~~pn~ 367 (561)
T PRK13748 312 IGEAVTAAFRAEGIEVLEHTQASQVAHV-DGEF-VLTTGH----------------GELRADKLLVATGRAPNT 367 (561)
T ss_pred HHHHHHHHHHHCCCEEEcCCEEEEEEec-CCEE-EEEecC----------------CeEEeCEEEEccCCCcCC
Confidence 4456667778899999999999999764 3432 244432 369999999999998765
No 215
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=92.57 E-value=0.57 Score=40.84 Aligned_cols=62 Identities=18% Similarity=0.309 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcccchHHH
Q psy9486 68 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLTKSLS 147 (165)
Q Consensus 68 ~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l~~~l~ 147 (165)
.+.+.+.+..++.||++++++.|.++.- + +|.+.+ |.++.|+.||.|.|.... .+.
T Consensus 229 ~~~~~~~~~L~~~gV~v~~~~~v~~v~~---~---~v~~~~---------------g~~i~~d~vi~~~G~~~~---~~~ 284 (424)
T PTZ00318 229 ALRKYGQRRLRRLGVDIRTKTAVKEVLD---K---EVVLKD---------------GEVIPTGLVVWSTGVGPG---PLT 284 (424)
T ss_pred HHHHHHHHHHHHCCCEEEeCCeEEEEeC---C---EEEECC---------------CCEEEccEEEEccCCCCc---chh
Confidence 3556667778889999999999998842 2 355554 458999999999997653 244
Q ss_pred hhcCCC
Q psy9486 148 SRFNLR 153 (165)
Q Consensus 148 ~~~gl~ 153 (165)
+..++.
T Consensus 285 ~~~~l~ 290 (424)
T PTZ00318 285 KQLKVD 290 (424)
T ss_pred hhcCCc
Confidence 445553
No 216
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=92.54 E-value=0.71 Score=40.27 Aligned_cols=57 Identities=14% Similarity=0.226 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486 68 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL 142 (165)
Q Consensus 68 ~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l 142 (165)
.+...|.+..++.||+++++++|.++..+ ++.+ .|.+.+ .++.++.||+|.|.....
T Consensus 200 ~~~~~l~~~l~~~gV~v~~~~~v~~i~~~-~~~v-~v~~~~----------------g~i~~D~vl~a~G~~pn~ 256 (441)
T PRK08010 200 DIADNIATILRDQGVDIILNAHVERISHH-ENQV-QVHSEH----------------AQLAVDALLIASGRQPAT 256 (441)
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEEc-CCEE-EEEEcC----------------CeEEeCEEEEeecCCcCC
Confidence 45566777888999999999999999764 3432 244332 268999999999998865
No 217
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=92.44 E-value=0.89 Score=38.35 Aligned_cols=52 Identities=25% Similarity=0.417 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCc
Q psy9486 68 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG 140 (165)
Q Consensus 68 ~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s 140 (165)
.+..++.+..++.||++++++.++++. ++ +|.+.+ |.++.++.||+|.|...
T Consensus 192 ~~~~~~~~~l~~~gV~v~~~~~v~~i~---~~---~v~~~~---------------g~~i~~D~vi~a~G~~p 243 (364)
T TIGR03169 192 KVRRLVLRLLARRGIEVHEGAPVTRGP---DG---ALILAD---------------GRTLPADAILWATGARA 243 (364)
T ss_pred HHHHHHHHHHHHCCCEEEeCCeeEEEc---CC---eEEeCC---------------CCEEecCEEEEccCCCh
Confidence 345677778889999999999999873 23 455543 35899999999999776
No 218
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=92.41 E-value=0.66 Score=41.27 Aligned_cols=60 Identities=22% Similarity=0.305 Sum_probs=46.9
Q ss_pred cEEEEh---HHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcc
Q psy9486 61 NYVVRL---GHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAE 136 (165)
Q Consensus 61 ~~~i~r---~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~ 136 (165)
.|+..+ +++-+.+.+.+.=.|..+..+..+.+|.++++|+++||... |+.++|+.||...
T Consensus 223 PfLyP~YG~GELpQ~FcRl~AV~GG~Y~L~~~i~~i~~~~~g~~~gV~s~----------------ge~v~~k~vI~dp 285 (438)
T PF00996_consen 223 PFLYPLYGLGELPQAFCRLSAVYGGTYMLNRPIDEIVVDEDGKVIGVKSE----------------GEVVKAKKVIGDP 285 (438)
T ss_dssp SEEEETT-TTHHHHHHHHHHHHTT-EEESS--EEEEEEETTTEEEEEEET----------------TEEEEESEEEEEG
T ss_pred CEEEEccCCccHHHHHHHHhhhcCcEEEeCCccceeeeecCCeEEEEecC----------------CEEEEcCEEEECC
Confidence 455554 48888888888889999999999999999778999999874 4789999999543
No 219
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=92.26 E-value=0.84 Score=40.00 Aligned_cols=61 Identities=23% Similarity=0.288 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486 68 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL 142 (165)
Q Consensus 68 ~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l 142 (165)
.+...+.+..++.|+++++++.|.++..+ ++.+ .+.+.+ +|+. .++.+|.||+|.|.....
T Consensus 214 ~~~~~l~~~l~~~gV~i~~~~~V~~i~~~-~~~v-~v~~~~-----gg~~-------~~i~~D~vi~a~G~~p~~ 274 (462)
T PRK06416 214 EISKLAERALKKRGIKIKTGAKAKKVEQT-DDGV-TVTLED-----GGKE-------ETLEADYVLVAVGRRPNT 274 (462)
T ss_pred HHHHHHHHHHHHcCCEEEeCCEEEEEEEe-CCEE-EEEEEe-----CCee-------EEEEeCEEEEeeCCccCC
Confidence 55667778888999999999999999764 3332 344433 1111 469999999999988765
No 220
>PRK14727 putative mercuric reductase; Provisional
Probab=92.24 E-value=0.74 Score=40.84 Aligned_cols=57 Identities=26% Similarity=0.277 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcccc
Q psy9486 69 VVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLT 143 (165)
Q Consensus 69 ~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l~ 143 (165)
+..++.+..++.||++++++.|+.+..+ ++.+ -|.+.+ .++.|+.||+|.|......
T Consensus 230 ~~~~l~~~L~~~GV~i~~~~~V~~i~~~-~~~~-~v~~~~----------------g~i~aD~VlvA~G~~pn~~ 286 (479)
T PRK14727 230 LGETLTACFEKEGIEVLNNTQASLVEHD-DNGF-VLTTGH----------------GELRAEKLLISTGRHANTH 286 (479)
T ss_pred HHHHHHHHHHhCCCEEEcCcEEEEEEEe-CCEE-EEEEcC----------------CeEEeCEEEEccCCCCCcc
Confidence 4456677778899999999999999764 3322 233332 3699999999999998653
No 221
>PLN02507 glutathione reductase
Probab=92.21 E-value=0.75 Score=41.19 Aligned_cols=58 Identities=21% Similarity=0.366 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486 68 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL 142 (165)
Q Consensus 68 ~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l 142 (165)
.+-.++.+..++.||++++++.|+++..+ ++.+ .|.+.+ |.++.++.||+|.|.....
T Consensus 245 ~~~~~l~~~l~~~GI~i~~~~~V~~i~~~-~~~~-~v~~~~---------------g~~i~~D~vl~a~G~~pn~ 302 (499)
T PLN02507 245 EMRAVVARNLEGRGINLHPRTNLTQLTKT-EGGI-KVITDH---------------GEEFVADVVLFATGRAPNT 302 (499)
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEEe-CCeE-EEEECC---------------CcEEEcCEEEEeecCCCCC
Confidence 34455666777899999999999999764 3332 344433 3579999999999988765
No 222
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=92.06 E-value=0.72 Score=41.05 Aligned_cols=64 Identities=14% Similarity=0.138 Sum_probs=46.8
Q ss_pred EEhHHHHHHHHHHHHHCCCE--EecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCc
Q psy9486 64 VRLGHVVKWLGEQAEAMGVE--IYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG 140 (165)
Q Consensus 64 i~r~~~d~~L~~~A~~~Gv~--i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s 140 (165)
.++.++-++|.+.|+..|++ |.++++|++|..+ +++ +-|.+.+ .++.. .+..+|.||+|+|..+
T Consensus 108 p~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~-~~~-w~V~~~~----~~~~~-------~~~~~d~VIvAtG~~~ 173 (461)
T PLN02172 108 PSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPV-DGK-WRVQSKN----SGGFS-------KDEIFDAVVVCNGHYT 173 (461)
T ss_pred CCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeec-CCe-EEEEEEc----CCCce-------EEEEcCEEEEeccCCC
Confidence 35678889999999999998 8999999999875 343 3455543 11111 2467899999999754
No 223
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=91.97 E-value=0.98 Score=39.36 Aligned_cols=57 Identities=16% Similarity=0.168 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486 68 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL 142 (165)
Q Consensus 68 ~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l 142 (165)
.+...+.+..++.|+++++++.|+++..+ ++.++ +... +.++.+|.||+|+|.....
T Consensus 199 ~~~~~~~~~l~~~GI~i~~~~~V~~i~~~-~~~v~-v~~~----------------g~~i~~D~viva~G~~p~~ 255 (438)
T PRK07251 199 SVAALAKQYMEEDGITFLLNAHTTEVKND-GDQVL-VVTE----------------DETYRFDALLYATGRKPNT 255 (438)
T ss_pred HHHHHHHHHHHHcCCEEEcCCEEEEEEec-CCEEE-EEEC----------------CeEEEcCEEEEeeCCCCCc
Confidence 45556666778899999999999999764 33332 3222 2479999999999998765
No 224
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=91.89 E-value=0.85 Score=36.76 Aligned_cols=61 Identities=18% Similarity=0.194 Sum_probs=44.0
Q ss_pred HHHHHHHHHHC-CCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486 70 VKWLGEQAEAM-GVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL 142 (165)
Q Consensus 70 d~~L~~~A~~~-Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l 142 (165)
...+.+.+++. |+++++++.++++..+ +++.++...+. .+|+ +.++.+|.||.|+|.....
T Consensus 179 ~~~~~~~l~~~~gv~~~~~~~v~~i~~~--~~~~~v~~~~~---~~g~-------~~~i~~D~vi~a~G~~~~~ 240 (300)
T TIGR01292 179 EKILLDRLRKNPNIEFLWNSTVKEIVGD--NKVEGVKIKNT---VTGE-------EEELKVDGVFIAIGHEPNT 240 (300)
T ss_pred CHHHHHHHHhCCCeEEEeccEEEEEEcc--CcEEEEEEEec---CCCc-------eEEEEccEEEEeeCCCCCh
Confidence 45566777787 9999999999999753 46667765421 1222 2579999999999977654
No 225
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=91.86 E-value=1 Score=39.51 Aligned_cols=60 Identities=20% Similarity=0.209 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486 69 VVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL 142 (165)
Q Consensus 69 ~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l 142 (165)
+-..+.+..++.||+++++++|+++..+ ++ ...|.+.. ++. +.++.++.||+|.|.....
T Consensus 209 ~~~~l~~~l~~~gV~i~~~~~V~~i~~~-~~-~~~v~~~~-----~~~-------~~~i~~D~ViiA~G~~p~~ 268 (463)
T TIGR02053 209 ISAAVEEALAEEGIEVVTSAQVKAVSVR-GG-GKIITVEK-----PGG-------QGEVEADELLVATGRRPNT 268 (463)
T ss_pred HHHHHHHHHHHcCCEEEcCcEEEEEEEc-CC-EEEEEEEe-----CCC-------ceEEEeCEEEEeECCCcCC
Confidence 4456667778899999999999999764 33 23344432 111 2479999999999988765
No 226
>KOG0404|consensus
Probab=91.83 E-value=0.33 Score=40.16 Aligned_cols=59 Identities=20% Similarity=0.201 Sum_probs=46.7
Q ss_pred EEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCc
Q psy9486 63 VVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG 140 (165)
Q Consensus 63 ~i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s 140 (165)
.+.-..+...|.+++++-|.+|++. +|.++..+ ++..-+.+.. ..++|+.||+|+|+..
T Consensus 66 gi~G~~l~d~mrkqs~r~Gt~i~tE-tVskv~~s--skpF~l~td~----------------~~v~~~avI~atGAsA 124 (322)
T KOG0404|consen 66 GITGPELMDKMRKQSERFGTEIITE-TVSKVDLS--SKPFKLWTDA----------------RPVTADAVILATGASA 124 (322)
T ss_pred ccccHHHHHHHHHHHHhhcceeeee-ehhhcccc--CCCeEEEecC----------------CceeeeeEEEecccce
Confidence 4566788889999999999999976 58888764 4555566653 4799999999999874
No 227
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=91.74 E-value=1.1 Score=39.56 Aligned_cols=59 Identities=19% Similarity=0.115 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486 69 VVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL 142 (165)
Q Consensus 69 ~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l 142 (165)
+-..+.+..++.|+++++++.|+++..++++. ..|.+.+ | ...+.++.||.|.|.....
T Consensus 209 ~~~~~~~~l~~~gI~i~~~~~v~~i~~~~~~~-~~v~~~~------g--------~~~i~~D~vi~a~G~~pn~ 267 (450)
T TIGR01421 209 ISETITEEYEKEGINVHKLSKPVKVEKTVEGK-LVIHFED------G--------KSIDDVDELIWAIGRKPNT 267 (450)
T ss_pred HHHHHHHHHHHcCCEEEcCCEEEEEEEeCCce-EEEEECC------C--------cEEEEcCEEEEeeCCCcCc
Confidence 34556666778899999999999997642332 3345433 1 1369999999999998765
No 228
>PRK13984 putative oxidoreductase; Provisional
Probab=91.72 E-value=0.77 Score=41.90 Aligned_cols=68 Identities=25% Similarity=0.334 Sum_probs=45.6
Q ss_pred HHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccc--cccCCCCCCCCCCc--CeEEEcCEEEEcccCCccc
Q psy9486 74 GEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDV--GIAKDGSPKDTFAR--GMELHAKVTIFAEGCHGHL 142 (165)
Q Consensus 74 ~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~--g~~~~g~~~~~~~~--g~~i~Ak~VI~A~G~~s~l 142 (165)
..++.+.||+|++++.+.++..+ +++|.+|++.+. -.+.+|+....+.+ ..++.||.||+|.|.....
T Consensus 469 ~~~~~~~GV~i~~~~~~~~i~~~-~g~v~~v~~~~~~~~~~~~G~~~~~~~~g~~~~i~aD~Vi~aiG~~p~~ 540 (604)
T PRK13984 469 IEEGLEEGVVIYPGWGPMEVVIE-NDKVKGVKFKKCVEVFDEEGRFNPKFDESDQIIVEADMVVEAIGQAPDY 540 (604)
T ss_pred HHHHHHcCCEEEeCCCCEEEEcc-CCEEEEEEEEEEeeccCCCCCccceecCCceEEEECCEEEEeeCCCCCh
Confidence 34566789999999999998664 788988876431 01233432221112 2469999999999988643
No 229
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=91.49 E-value=0.68 Score=45.17 Aligned_cols=71 Identities=14% Similarity=0.070 Sum_probs=50.7
Q ss_pred HHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEcccc--------ccCC-C------CCCCCCCcCeEEEcCEEEEcc
Q psy9486 72 WLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVG--------IAKD-G------SPKDTFARGMELHAKVTIFAE 136 (165)
Q Consensus 72 ~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g--------~~~~-g------~~~~~~~~g~~i~Ak~VI~A~ 136 (165)
+=.+.|.+.||+|.+.+.-.+++.+++|+|.||++..+- .-.+ + .+.+-..+...|.||.||+|.
T Consensus 645 eEv~~A~eEGV~f~~~~~P~~i~~d~~g~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vi~A~ 724 (1028)
T PRK06567 645 EELIYALALGVDFKENMQPLRINVDKYGHVESVEFENRNRHCEQSKTAWQSHEFGLTRLPRQCYAFPRNDIKTKTVIMAI 724 (1028)
T ss_pred HHHHHHHHcCcEEEecCCcEEEEecCCCeEEEEEEEEEecccccccccccccccccCCcCcccCCCccccccCCEEEEec
Confidence 446678999999999999999988777999999887532 1111 1 122223344679999999999
Q ss_pred cCCccc
Q psy9486 137 GCHGHL 142 (165)
Q Consensus 137 G~~s~l 142 (165)
|..-..
T Consensus 725 G~~~~~ 730 (1028)
T PRK06567 725 GIENNT 730 (1028)
T ss_pred ccCCcc
Confidence 965543
No 230
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=91.36 E-value=0.98 Score=44.11 Aligned_cols=68 Identities=21% Similarity=0.356 Sum_probs=47.4
Q ss_pred HHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEcccc---ccCCCCCCCCCCcC--eEEEcCEEEEcccCCccc
Q psy9486 74 GEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVG---IAKDGSPKDTFARG--MELHAKVTIFAEGCHGHL 142 (165)
Q Consensus 74 ~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g---~~~~g~~~~~~~~g--~~i~Ak~VI~A~G~~s~l 142 (165)
.+.|++.||+|++.+.+.++..+++|+|.+|++..+- -|.+|+..+.. +| .++.+|.||+|.|.....
T Consensus 616 ~~~a~eeGI~~~~~~~p~~i~~~~~G~v~~v~~~~~~l~~~d~~Gr~~~~~-~g~~~~i~~D~Vi~AiG~~p~~ 688 (1006)
T PRK12775 616 IRHAKEEGIDFFFLHSPVEIYVDAEGSVRGMKVEEMELGEPDEKGRRKPMP-TGEFKDLECDTVIYALGTKANP 688 (1006)
T ss_pred HHHHHhCCCEEEecCCcEEEEeCCCCeEEEEEEEEEEecccCCCCCccccC-CCceEEEEcCEEEECCCcCCCh
Confidence 3568889999999999999987667899998765321 12334321111 12 369999999999987653
No 231
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=91.34 E-value=0.65 Score=40.93 Aligned_cols=54 Identities=30% Similarity=0.518 Sum_probs=40.3
Q ss_pred HHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCe-EEEcCEEEEcccCCcccchHHHhh
Q psy9486 72 WLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGM-ELHAKVTIFAEGCHGHLTKSLSSR 149 (165)
Q Consensus 72 ~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~-~i~Ak~VI~A~G~~s~l~~~l~~~ 149 (165)
...+..+++||+|.+++.|+++.- + +|.+.+ |. +|.|+.||-|+|..+ ..+.+.
T Consensus 214 ~a~~~L~~~GV~v~l~~~Vt~v~~---~---~v~~~~---------------g~~~I~~~tvvWaaGv~a---~~~~~~ 268 (405)
T COG1252 214 YAERALEKLGVEVLLGTPVTEVTP---D---GVTLKD---------------GEEEIPADTVVWAAGVRA---SPLLKD 268 (405)
T ss_pred HHHHHHHHCCCEEEcCCceEEECC---C---cEEEcc---------------CCeeEecCEEEEcCCCcC---Chhhhh
Confidence 334445679999999999999943 2 566664 23 599999999999987 455555
No 232
>KOG2311|consensus
Probab=91.31 E-value=0.39 Score=43.55 Aligned_cols=58 Identities=19% Similarity=0.280 Sum_probs=43.7
Q ss_pred EhHHHHHHHHHHHHHC------CCEEecCCceeEEEEcCCC----cEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEE
Q psy9486 65 RLGHVVKWLGEQAEAM------GVEIYPGIPASEVLYHGDG----SVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIF 134 (165)
Q Consensus 65 ~r~~~d~~L~~~A~~~------Gv~i~~~~~v~~i~~~~~g----~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~ 134 (165)
.|..+|+-|+++..+. ..+|+++ .|.+++..+.+ +|.||.+.+ |..|+|+-||+
T Consensus 117 ~RAQiDR~lYkk~MQkei~st~nL~ire~-~V~dliv~~~~~~~~~~~gV~l~d---------------gt~v~a~~Vil 180 (679)
T KOG2311|consen 117 LRAQIDRKLYKKNMQKEISSTPNLEIREG-AVADLIVEDPDDGHCVVSGVVLVD---------------GTVVYAESVIL 180 (679)
T ss_pred hHHhhhHHHHHHHHHHHhccCCcchhhhh-hhhheeeccCCCCceEEEEEEEec---------------CcEeccceEEE
Confidence 4778888888887653 4566655 67778774322 489999987 68899999999
Q ss_pred cccC
Q psy9486 135 AEGC 138 (165)
Q Consensus 135 A~G~ 138 (165)
.+|.
T Consensus 181 TTGT 184 (679)
T KOG2311|consen 181 TTGT 184 (679)
T ss_pred eecc
Confidence 9993
No 233
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=91.28 E-value=1 Score=40.87 Aligned_cols=68 Identities=25% Similarity=0.220 Sum_probs=43.0
Q ss_pred HHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccc--c-ccCCCCCCCCCCcCeEEEcCEEEEcccCCcc
Q psy9486 73 LGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDV--G-IAKDGSPKDTFARGMELHAKVTIFAEGCHGH 141 (165)
Q Consensus 73 L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~--g-~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~ 141 (165)
..+.+.+.|++|++++.+.++.-++++. +||+...+ + .|.+|...+.-....++.+|.||.|.|....
T Consensus 311 ~~~~a~~~GVki~~~~~~~~i~~~~~~~-~~v~~~~~~~~~~~~~g~~~~~~g~~~~i~~D~Vi~A~G~~p~ 381 (564)
T PRK12771 311 EIEEALREGVEINWLRTPVEIEGDENGA-TGLRVITVEKMELDEDGRPSPVTGEEETLEADLVVLAIGQDID 381 (564)
T ss_pred HHHHHHHcCCEEEecCCcEEEEcCCCCE-EEEEEEEEEecccCCCCCeeecCCceEEEECCEEEECcCCCCc
Confidence 4556778899999999999997653444 47654321 1 1234432111001247999999999997763
No 234
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=91.08 E-value=1.4 Score=38.91 Aligned_cols=63 Identities=16% Similarity=0.149 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486 68 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL 142 (165)
Q Consensus 68 ~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l 142 (165)
.+...+.+..++.||+|++++.|+++.-+ ++.+ .+..... .+|+ +.++.++.||+|.|.....
T Consensus 216 ~~~~~l~~~l~~~gV~i~~~~~V~~i~~~-~~~v-~v~~~~~---~~g~-------~~~i~~D~vi~a~G~~pn~ 278 (466)
T PRK06115 216 ETAKTLQKALTKQGMKFKLGSKVTGATAG-ADGV-SLTLEPA---AGGA-------AETLQADYVLVAIGRRPYT 278 (466)
T ss_pred HHHHHHHHHHHhcCCEEEECcEEEEEEEc-CCeE-EEEEEEc---CCCc-------eeEEEeCEEEEccCCcccc
Confidence 35566777888899999999999999764 2322 2222210 1121 2479999999999988654
No 235
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=90.88 E-value=1.1 Score=39.44 Aligned_cols=69 Identities=23% Similarity=0.185 Sum_probs=44.3
Q ss_pred HHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccc---cccCCCCCCCCC-CcCeEEEcCEEEEcccCCcc
Q psy9486 72 WLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDV---GIAKDGSPKDTF-ARGMELHAKVTIFAEGCHGH 141 (165)
Q Consensus 72 ~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~---g~~~~g~~~~~~-~~g~~i~Ak~VI~A~G~~s~ 141 (165)
+..+.+++.||+|++++.+.++.-+ ++.+.+|..... .-+.+|+..... ..+.++.+|.||.|.|....
T Consensus 316 ~~~~~~~~~GV~i~~~~~v~~i~~~-~~~~~~v~~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~p~ 388 (457)
T PRK11749 316 EEVEHAKEEGVEFEWLAAPVEILGD-EGRVTGVEFVRMELGEPDASGRRRVPIEGSEFTLPADLVIKAIGQTPN 388 (457)
T ss_pred HHHHHHHHCCCEEEecCCcEEEEec-CCceEEEEEEEEEecCcCCCCCcccCCCCceEEEECCEEEECccCCCC
Confidence 4567788999999999999998764 455566655321 011223210000 01347999999999998765
No 236
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=90.63 E-value=1.3 Score=39.61 Aligned_cols=71 Identities=21% Similarity=0.180 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcccchHHH
Q psy9486 68 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLTKSLS 147 (165)
Q Consensus 68 ~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l~~~l~ 147 (165)
++-+.+.+..++.|+++++++.++.+... ++. +.|...+ |. +..++|+.|++|.|.......--.
T Consensus 215 ei~~~~~~~l~~~gv~i~~~~~v~~~~~~-~~~-v~v~~~~------g~-------~~~~~ad~vLvAiGR~Pn~~~LgL 279 (454)
T COG1249 215 EISKELTKQLEKGGVKILLNTKVTAVEKK-DDG-VLVTLED------GE-------GGTIEADAVLVAIGRKPNTDGLGL 279 (454)
T ss_pred HHHHHHHHHHHhCCeEEEccceEEEEEec-CCe-EEEEEec------CC-------CCEEEeeEEEEccCCccCCCCCCh
Confidence 34455666666678999999999999775 333 4455543 21 126999999999999887754334
Q ss_pred hhcCCC
Q psy9486 148 SRFNLR 153 (165)
Q Consensus 148 ~~~gl~ 153 (165)
++.|+.
T Consensus 280 e~~Gv~ 285 (454)
T COG1249 280 ENAGVE 285 (454)
T ss_pred hhcCce
Confidence 455554
No 237
>PRK09897 hypothetical protein; Provisional
Probab=90.55 E-value=1.3 Score=40.41 Aligned_cols=51 Identities=20% Similarity=0.235 Sum_probs=36.7
Q ss_pred HHHHHHHCC--CEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCC
Q psy9486 73 LGEQAEAMG--VEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH 139 (165)
Q Consensus 73 L~~~A~~~G--v~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~ 139 (165)
+.+.+.+.| ++++..++|+++..+ ++.+ .|.+.+ + +..+.||.||+|+|..
T Consensus 113 l~~~a~~~G~~V~v~~~~~V~~I~~~-~~g~-~V~t~~------g--------g~~i~aD~VVLAtGh~ 165 (534)
T PRK09897 113 LVDQARQQKFAVAVYESCQVTDLQIT-NAGV-MLATNQ------D--------LPSETFDLAVIATGHV 165 (534)
T ss_pred HHHHHHHcCCeEEEEECCEEEEEEEe-CCEE-EEEECC------C--------CeEEEcCEEEECCCCC
Confidence 456667777 788889999999875 3432 355543 1 2479999999999974
No 238
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=90.48 E-value=1.8 Score=38.09 Aligned_cols=62 Identities=24% Similarity=0.325 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486 68 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL 142 (165)
Q Consensus 68 ~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l 142 (165)
.+-..+.+..++.||+|++++.|+++.-+ ++. +.|.+.. .+|+. .++.++.||+|.|.....
T Consensus 214 ~~~~~l~~~l~~~gV~i~~~~~v~~i~~~-~~~-~~v~~~~----~~g~~-------~~i~~D~vi~a~G~~pn~ 275 (466)
T PRK07818 214 EVSKEIAKQYKKLGVKILTGTKVESIDDN-GSK-VTVTVSK----KDGKA-------QELEADKVLQAIGFAPRV 275 (466)
T ss_pred HHHHHHHHHHHHCCCEEEECCEEEEEEEe-CCe-EEEEEEe----cCCCe-------EEEEeCEEEECcCcccCC
Confidence 35566777788899999999999999753 333 2344331 12321 379999999999988765
No 239
>PTZ00058 glutathione reductase; Provisional
Probab=90.28 E-value=1.9 Score=39.51 Aligned_cols=59 Identities=15% Similarity=0.179 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486 69 VVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL 142 (165)
Q Consensus 69 ~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l 142 (165)
+.+.+.+..++.||++++++.+.++..++++.+. +...+ + +.++.++.||+|.|.....
T Consensus 280 i~~~l~~~L~~~GV~i~~~~~V~~I~~~~~~~v~-v~~~~------~--------~~~i~aD~VlvA~Gr~Pn~ 338 (561)
T PTZ00058 280 IINELENDMKKNNINIITHANVEEIEKVKEKNLT-IYLSD------G--------RKYEHFDYVIYCVGRSPNT 338 (561)
T ss_pred HHHHHHHHHHHCCCEEEeCCEEEEEEecCCCcEE-EEECC------C--------CEEEECCEEEECcCCCCCc
Confidence 4455666777889999999999999754333332 22222 1 2479999999999988765
No 240
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=90.05 E-value=0.47 Score=44.75 Aligned_cols=63 Identities=22% Similarity=0.383 Sum_probs=50.3
Q ss_pred HHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcccchHHHhhcC
Q psy9486 72 WLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLTKSLSSRFN 151 (165)
Q Consensus 72 ~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l~~~l~~~~g 151 (165)
.|..+.++.|+.++++...++++- .+++.+|+..+ |..+.|+.||.|+|.+..+ .+.+..|
T Consensus 192 lL~~~le~~Gi~~~l~~~t~ei~g--~~~~~~vr~~D---------------G~~i~ad~VV~a~GIrPn~--ela~~aG 252 (793)
T COG1251 192 LLRRKLEDLGIKVLLEKNTEEIVG--EDKVEGVRFAD---------------GTEIPADLVVMAVGIRPND--ELAKEAG 252 (793)
T ss_pred HHHHHHHhhcceeecccchhhhhc--CcceeeEeecC---------------CCcccceeEEEeccccccc--HhHHhcC
Confidence 466667789999999988888876 47888999886 5689999999999998866 4455566
Q ss_pred CC
Q psy9486 152 LR 153 (165)
Q Consensus 152 l~ 153 (165)
|.
T Consensus 253 la 254 (793)
T COG1251 253 LA 254 (793)
T ss_pred cC
Confidence 64
No 241
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=89.84 E-value=0.91 Score=40.16 Aligned_cols=74 Identities=11% Similarity=0.132 Sum_probs=54.4
Q ss_pred CCCCCcEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEE--EEEccccccCCCCCCCCCCcCeEEEcCEEE
Q psy9486 56 MNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKG--IATGDVGIAKDGSPKDTFARGMELHAKVTI 133 (165)
Q Consensus 56 ~~~~~~~~i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~G--V~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI 133 (165)
+-+.+.|.+.|.++++++.-.|..+ -.+.+++.|++|..-+.+.+.- |++.+ +..++|+-+|
T Consensus 87 Fl~~e~f~i~R~Ey~dY~~Waa~~l-~~~rfg~~V~~i~~~~~d~~~~~~~~t~~---------------~~~y~ar~lV 150 (436)
T COG3486 87 FLNYETFHIPRREYNDYCQWAASQL-PSLRFGEEVTDISSLDGDAVVRLFVVTAN---------------GTVYRARNLV 150 (436)
T ss_pred hhhhhcccccHHHHHHHHHHHHhhC-CccccCCeeccccccCCcceeEEEEEcCC---------------CcEEEeeeEE
Confidence 3456688999999999988888888 7899999999773211222222 44443 3489999999
Q ss_pred EcccCCcccchH
Q psy9486 134 FAEGCHGHLTKS 145 (165)
Q Consensus 134 ~A~G~~s~l~~~ 145 (165)
++.|....+-..
T Consensus 151 lg~G~~P~IP~~ 162 (436)
T COG3486 151 LGVGTQPYIPPC 162 (436)
T ss_pred EccCCCcCCChH
Confidence 999998877543
No 242
>PLN02546 glutathione reductase
Probab=89.81 E-value=2.3 Score=38.85 Aligned_cols=57 Identities=21% Similarity=0.313 Sum_probs=40.5
Q ss_pred HHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486 70 VKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL 142 (165)
Q Consensus 70 d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l 142 (165)
-.++.+..++.||++++++.+.++..++++.+ .|.+.+ +....++.||+|.|.....
T Consensus 296 ~~~l~~~L~~~GV~i~~~~~v~~i~~~~~g~v-~v~~~~---------------g~~~~~D~Viva~G~~Pnt 352 (558)
T PLN02546 296 RDFVAEQMSLRGIEFHTEESPQAIIKSADGSL-SLKTNK---------------GTVEGFSHVMFATGRKPNT 352 (558)
T ss_pred HHHHHHHHHHCCcEEEeCCEEEEEEEcCCCEE-EEEECC---------------eEEEecCEEEEeeccccCC
Confidence 34566777889999999999999976434433 344432 2234489999999998866
No 243
>KOG2960|consensus
Probab=89.68 E-value=1.3 Score=36.42 Aligned_cols=85 Identities=16% Similarity=0.267 Sum_probs=57.4
Q ss_pred CCCcEEEEh--HHHHHHHHHHHHH-CCCEEecCCceeEEEEcCC--C--cEEEEEEccccccCCCCCCCCCCcCeEEEcC
Q psy9486 58 NHGNYVVRL--GHVVKWLGEQAEA-MGVEIYPGIPASEVLYHGD--G--SVKGIATGDVGIAKDGSPKDTFARGMELHAK 130 (165)
Q Consensus 58 ~~~~~~i~r--~~~d~~L~~~A~~-~Gv~i~~~~~v~~i~~~~~--g--~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak 130 (165)
..+.|++-. .-|......+.-+ -.|.+|.-+.|++++..+. | +|.||.|++.=+..+--.+.- ++...|.|.
T Consensus 146 degdYVVVKHAALFtSTvmsk~LalPNVKLFNAtavEDLivk~g~~g~~rvaGVVTNWtLV~qnHgtQsC-MDPNviea~ 224 (328)
T KOG2960|consen 146 DEGDYVVVKHAALFTSTVMSKVLALPNVKLFNATAVEDLIVKPGEKGEVRVAGVVTNWTLVTQNHGTQSC-MDPNVIEAA 224 (328)
T ss_pred cCCCEEEEeeHHHHHHHHHHHHhcCCcceeechhhhhhhhcccCcCCceEEEEEEeeeEEeeeccCcccc-CCCCeeeEE
Confidence 456777643 3466655555544 6999999999999988532 2 789999987544333212222 222479999
Q ss_pred EEEEcccCCcccc
Q psy9486 131 VTIFAEGCHGHLT 143 (165)
Q Consensus 131 ~VI~A~G~~s~l~ 143 (165)
+|+-++|..+...
T Consensus 225 ~vvS~tGHDGPFG 237 (328)
T KOG2960|consen 225 VVVSTTGHDGPFG 237 (328)
T ss_pred EEEEccCCCCCch
Confidence 9999999988764
No 244
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=89.57 E-value=2.2 Score=37.58 Aligned_cols=59 Identities=20% Similarity=0.247 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486 68 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL 142 (165)
Q Consensus 68 ~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l 142 (165)
++-+.+.+..++.|+++++++.|+++..+ ++. +-+... |+ ..++.+|.||+|+|....+
T Consensus 212 e~~~~l~~~L~~~GI~i~~~~~V~~i~~~-~~~-v~~~~~-------g~-------~~~i~~D~vivA~G~~p~~ 270 (458)
T PRK06912 212 DIAHILREKLENDGVKIFTGAALKGLNSY-KKQ-ALFEYE-------GS-------IQEVNAEFVLVSVGRKPRV 270 (458)
T ss_pred HHHHHHHHHHHHCCCEEEECCEEEEEEEc-CCE-EEEEEC-------Cc-------eEEEEeCEEEEecCCccCC
Confidence 45556777788899999999999998653 232 222221 11 1369999999999988765
No 245
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=89.53 E-value=0.39 Score=36.51 Aligned_cols=56 Identities=23% Similarity=0.252 Sum_probs=37.7
Q ss_pred HHHHHHHCCCEEecCCceeEEEEcCCCcE----EEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcc
Q psy9486 73 LGEQAEAMGVEIYPGIPASEVLYHGDGSV----KGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH 141 (165)
Q Consensus 73 L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V----~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~ 141 (165)
+.+++...+++++.++.|.++... .+++ ..+.... .+ .+.++.+|.+|+|+|..+.
T Consensus 64 ~~~~~~~~~v~~~~~~~v~~i~~~-~~~~~~~~~~~~~~~-----~~-------~~~~~~~d~lviAtG~~~~ 123 (201)
T PF07992_consen 64 LVDQLKNRGVEIRLNAKVVSIDPE-SKRVVCPAVTIQVVE-----TG-------DGREIKYDYLVIATGSRPR 123 (201)
T ss_dssp HHHHHHHHTHEEEHHHTEEEEEES-TTEEEETCEEEEEEE-----TT-------TEEEEEEEEEEEESTEEEE
T ss_pred cccccccceEEEeecccccccccc-ccccccCcccceeec-----cC-------CceEecCCeeeecCccccc
Confidence 355557789999888999999775 4532 1221111 11 1368999999999997653
No 246
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=89.23 E-value=2.1 Score=37.42 Aligned_cols=61 Identities=10% Similarity=0.062 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcccchHHHh
Q psy9486 69 VVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLTKSLSS 148 (165)
Q Consensus 69 ~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l~~~l~~ 148 (165)
+.+.+.+..++.||+++++++|+++. .. .|.+.+ |..+.+|.||.|.|..... .+.+
T Consensus 191 ~~~~l~~~l~~~gI~i~~~~~v~~i~---~~---~v~~~~---------------g~~~~~D~vl~a~G~~pn~--~~l~ 247 (438)
T PRK13512 191 MNQPILDELDKREIPYRLNEEIDAIN---GN---EVTFKS---------------GKVEHYDMIIEGVGTHPNS--KFIE 247 (438)
T ss_pred HHHHHHHHHHhcCCEEEECCeEEEEe---CC---EEEECC---------------CCEEEeCEEEECcCCCcCh--HHHH
Confidence 44566777788999999999999983 22 344443 3478999999999988754 2345
Q ss_pred hcCC
Q psy9486 149 RFNL 152 (165)
Q Consensus 149 ~~gl 152 (165)
..|+
T Consensus 248 ~~gl 251 (438)
T PRK13512 248 SSNI 251 (438)
T ss_pred hcCc
Confidence 4555
No 247
>PRK10262 thioredoxin reductase; Provisional
Probab=89.18 E-value=1.5 Score=36.46 Aligned_cols=64 Identities=17% Similarity=0.136 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486 69 VVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL 142 (165)
Q Consensus 69 ~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l 142 (165)
+.+.+.+..++.||++++++.++++.-+ ++.+.+|++.+. .++.. ..++.++.||.|.|.....
T Consensus 187 ~~~~~~~~l~~~gV~i~~~~~v~~v~~~-~~~~~~v~~~~~---~~~~~------~~~i~~D~vv~a~G~~p~~ 250 (321)
T PRK10262 187 LIKRLMDKVENGNIILHTNRTLEEVTGD-QMGVTGVRLRDT---QNSDN------IESLDVAGLFVAIGHSPNT 250 (321)
T ss_pred HHHHHHhhccCCCeEEEeCCEEEEEEcC-CccEEEEEEEEc---CCCCe------EEEEECCEEEEEeCCccCh
Confidence 3445556666789999999999999653 446777776531 01111 2479999999999987654
No 248
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=89.12 E-value=2.6 Score=37.31 Aligned_cols=62 Identities=23% Similarity=0.252 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486 68 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL 142 (165)
Q Consensus 68 ~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l 142 (165)
.+...+.+..++.|+++++++.|+++..+ ++.+ .|...+ .+|+. .++.++.||+|.|.....
T Consensus 225 ~~~~~~~~~l~~~gi~i~~~~~v~~i~~~-~~~v-~v~~~~----~~g~~-------~~i~~D~vl~a~G~~p~~ 286 (475)
T PRK06327 225 QVAKEAAKAFTKQGLDIHLGVKIGEIKTG-GKGV-SVAYTD----ADGEA-------QTLEVDKLIVSIGRVPNT 286 (475)
T ss_pred HHHHHHHHHHHHcCcEEEeCcEEEEEEEc-CCEE-EEEEEe----CCCce-------eEEEcCEEEEccCCccCC
Confidence 45556677778899999999999999764 3333 344432 12321 369999999999988765
No 249
>KOG2853|consensus
Probab=88.77 E-value=1.9 Score=37.79 Aligned_cols=72 Identities=14% Similarity=0.262 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHCCCEEecCCceeEEEEc---------CCC-------cEEEEEEccccccCCCCCCCCCCcCeEEEcC
Q psy9486 67 GHVVKWLGEQAEAMGVEIYPGIPASEVLYH---------GDG-------SVKGIATGDVGIAKDGSPKDTFARGMELHAK 130 (165)
Q Consensus 67 ~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~---------~~g-------~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak 130 (165)
..+-.-+.++|..+||.+..+ .|++..++ +++ ++.||.+. + .|+.. ..+++.
T Consensus 243 w~LLs~~rrk~~~lGv~f~~G-eV~~Fef~sqr~v~~~tDd~t~~~~~~~i~~vvV~-m---~d~~~-------r~vk~a 310 (509)
T KOG2853|consen 243 WALLSGIRRKAITLGVQFVKG-EVVGFEFESQRAVHAFTDDGTAKLRAQRISGVVVR-M---NDALA-------RPVKFA 310 (509)
T ss_pred HHHHHHHHHHhhhhcceEecc-eEEEEEEecccceeeecccchhhhhhcccceeEEe-c---Cchhc-------CceeEE
Confidence 344445788999999999755 67777775 234 44444333 1 12322 369999
Q ss_pred EEEEcccCCcccchHHHhhcCCC
Q psy9486 131 VTIFAEGCHGHLTKSLSSRFNLR 153 (165)
Q Consensus 131 ~VI~A~G~~s~l~~~l~~~~gl~ 153 (165)
.+|.|+|+|| .|+.+..|+-
T Consensus 311 l~V~aAGa~s---~QvArlAgIG 330 (509)
T KOG2853|consen 311 LCVNAAGAWS---GQVARLAGIG 330 (509)
T ss_pred EEEeccCccH---HHHHHHhccC
Confidence 9999999998 6777666664
No 250
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=88.65 E-value=2 Score=38.59 Aligned_cols=62 Identities=19% Similarity=0.227 Sum_probs=44.3
Q ss_pred HHHHHHHHHH-CCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486 70 VKWLGEQAEA-MGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL 142 (165)
Q Consensus 70 d~~L~~~A~~-~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l 142 (165)
+..+.+..++ .||+|++++.++++.-+ ++++.+|.+.+. .+|+ +..+.+|.||+|.|.....
T Consensus 390 ~~~l~~~l~~~~gV~i~~~~~v~~i~~~-~~~v~~v~~~~~---~~~~-------~~~i~~D~vi~a~G~~Pn~ 452 (515)
T TIGR03140 390 DKVLQDKLKSLPNVDILTSAQTTEIVGD-GDKVTGIRYQDR---NSGE-------EKQLDLDGVFVQIGLVPNT 452 (515)
T ss_pred hHHHHHHHhcCCCCEEEECCeeEEEEcC-CCEEEEEEEEEC---CCCc-------EEEEEcCEEEEEeCCcCCc
Confidence 3455666666 59999999999999653 477878876531 1121 2469999999999987644
No 251
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=88.63 E-value=1.8 Score=38.36 Aligned_cols=89 Identities=18% Similarity=0.196 Sum_probs=48.7
Q ss_pred ceEEEEcCCceEEecCCCCCCCCCCCcEEEEhHHHHHHHHHHHHHCCC--EEecCCceeEEEEcCCCcEEEEEEcccccc
Q psy9486 35 DKFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGV--EIYPGIPASEVLYHGDGSVKGIATGDVGIA 112 (165)
Q Consensus 35 ~~~~~~~~~~~l~i~~~~~~~~~~~~~~~i~r~~~d~~L~~~A~~~Gv--~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~ 112 (165)
.++++-++...+.+|+.|-........+.-.+ .++...+++.|. +|...+.|+.+.+++++...-|.+.+
T Consensus 54 ~~l~~~~p~~~~~~~~~p~~~~~~~~~~~~~~----~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~---- 125 (443)
T COG2072 54 PGLRLDSPKWLLGFPFLPFRWDEAFAPFAEIK----DYIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSD---- 125 (443)
T ss_pred CceEECCchheeccCCCccCCcccCCCcccHH----HHHHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcC----
Confidence 34444455455666665421001122222223 344555555553 34445566667777667677787775
Q ss_pred CCCCCCCCCCcCeEEEcCEEEEcccCCc
Q psy9486 113 KDGSPKDTFARGMELHAKVTIFAEGCHG 140 (165)
Q Consensus 113 ~~g~~~~~~~~g~~i~Ak~VI~A~G~~s 140 (165)
|.. .++.|+.||+|+|..+
T Consensus 126 --~~~-------~~~~a~~vV~ATG~~~ 144 (443)
T COG2072 126 --GGT-------GELTADFVVVATGHLS 144 (443)
T ss_pred --CCe-------eeEecCEEEEeecCCC
Confidence 211 1277999999999855
No 252
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=88.58 E-value=1.1 Score=38.95 Aligned_cols=66 Identities=24% Similarity=0.333 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcccchHHH
Q psy9486 68 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLTKSLS 147 (165)
Q Consensus 68 ~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l~~~l~ 147 (165)
.+-..|..+-+++|.-++++-+|.+.... +++|..|-|.+ .. ...++|+..|+|+| |.+.+-|.
T Consensus 259 Rl~~~L~~~f~~~Gg~~m~Gd~V~~a~~~-~~~v~~i~trn------~~-------diP~~a~~~VLAsG--sffskGLv 322 (421)
T COG3075 259 RLHNQLQRQFEQLGGLWMPGDEVKKATCK-GGRVTEIYTRN------HA-------DIPLRADFYVLASG--SFFSKGLV 322 (421)
T ss_pred hHHHHHHHHHHHcCceEecCCceeeeeee-CCeEEEEEecc------cc-------cCCCChhHeeeecc--ccccccch
Confidence 34567788889999999999999999986 79999998875 11 24699999999999 66655544
Q ss_pred hh
Q psy9486 148 SR 149 (165)
Q Consensus 148 ~~ 149 (165)
..
T Consensus 323 ae 324 (421)
T COG3075 323 AE 324 (421)
T ss_pred hh
Confidence 43
No 253
>PTZ00052 thioredoxin reductase; Provisional
Probab=88.40 E-value=3 Score=37.30 Aligned_cols=56 Identities=14% Similarity=0.168 Sum_probs=41.9
Q ss_pred HHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486 70 VKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL 142 (165)
Q Consensus 70 d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l 142 (165)
-+.+.+..++.||++++++.+.++... ++. ..|...+ |.++.++.||+|.|.....
T Consensus 225 ~~~l~~~l~~~GV~i~~~~~v~~v~~~-~~~-~~v~~~~---------------g~~i~~D~vl~a~G~~pn~ 280 (499)
T PTZ00052 225 SEKVVEYMKEQGTLFLEGVVPINIEKM-DDK-IKVLFSD---------------GTTELFDTVLYATGRKPDI 280 (499)
T ss_pred HHHHHHHHHHcCCEEEcCCeEEEEEEc-CCe-EEEEECC---------------CCEEEcCEEEEeeCCCCCc
Confidence 456677778899999999999988754 333 2355443 3468999999999998865
No 254
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=88.00 E-value=1.7 Score=37.96 Aligned_cols=51 Identities=14% Similarity=0.172 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEccc
Q psy9486 68 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEG 137 (165)
Q Consensus 68 ~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G 137 (165)
.+.+.|++.+.+ ++|.++++|+.|..+ ++++ .|.+.+ |..+.||.||+|.-
T Consensus 227 ~l~~~l~~~l~~--~~i~~~~~V~~I~~~-~~~~-~v~~~~---------------g~~~~ad~VI~a~p 277 (463)
T PRK12416 227 TIIDRLEEVLTE--TVVKKGAVTTAVSKQ-GDRY-EISFAN---------------HESIQADYVVLAAP 277 (463)
T ss_pred HHHHHHHHhccc--ccEEcCCEEEEEEEc-CCEE-EEEECC---------------CCEEEeCEEEECCC
Confidence 455555555543 689999999999886 3443 466554 34789999999884
No 255
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=87.59 E-value=2.1 Score=36.53 Aligned_cols=47 Identities=17% Similarity=0.321 Sum_probs=35.0
Q ss_pred HHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcc
Q psy9486 75 EQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH 141 (165)
Q Consensus 75 ~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~ 141 (165)
+.+++.|++++.+++|+++..+ .+. |.+. +.++.+|.+|+|+|+...
T Consensus 66 ~~~~~~gv~~~~~~~V~~id~~--~~~--v~~~----------------~~~~~yd~LVlATG~~~~ 112 (377)
T PRK04965 66 EFAEQFNLRLFPHTWVTDIDAE--AQV--VKSQ----------------GNQWQYDKLVLATGASAF 112 (377)
T ss_pred HHHHhCCCEEECCCEEEEEECC--CCE--EEEC----------------CeEEeCCEEEECCCCCCC
Confidence 4466789999999999998664 332 2333 247999999999998753
No 256
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=87.35 E-value=2.8 Score=37.39 Aligned_cols=61 Identities=21% Similarity=0.207 Sum_probs=38.4
Q ss_pred HCCCEE-ecCCceeEEEEcCCCcEEEEEEccc--cccCCCCCCCCCCcC--eEEEcCEEEEcccCC
Q psy9486 79 AMGVEI-YPGIPASEVLYHGDGSVKGIATGDV--GIAKDGSPKDTFARG--MELHAKVTIFAEGCH 139 (165)
Q Consensus 79 ~~Gv~i-~~~~~v~~i~~~~~g~V~GV~~~~~--g~~~~g~~~~~~~~g--~~i~Ak~VI~A~G~~ 139 (165)
..|+++ ++.+.+.+++-+++++|.+|++..+ .-+.+|+..+.+.+| .++.+|.||.|.|..
T Consensus 348 ~~gv~~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~Gr~~p~~~~g~~~~i~~D~Vi~AiG~~ 413 (485)
T TIGR01317 348 HYGRDPREYSILTKEFIGDDEGKVTALRTVRVEWKKSQDGKWQFVEIPGSEEVFEADLVLLAMGFV 413 (485)
T ss_pred hcCccceEEecCcEEEEEcCCCeEEEEEEEEEEeccCCCCCccceecCCceEEEECCEEEEccCcC
Confidence 357654 4678888887654578999875422 112455422222222 369999999999964
No 257
>KOG1335|consensus
Probab=87.28 E-value=4.2 Score=36.17 Aligned_cols=60 Identities=20% Similarity=0.314 Sum_probs=44.4
Q ss_pred HHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcccc
Q psy9486 73 LGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLT 143 (165)
Q Consensus 73 L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l~ 143 (165)
+.+-..+.|..+.++|+|.....+.||.| -|...+. ++|+. .++.||++++|.|.+....
T Consensus 258 ~qr~L~kQgikF~l~tkv~~a~~~~dg~v-~i~ve~a---k~~k~-------~tle~DvlLVsiGRrP~t~ 317 (506)
T KOG1335|consen 258 FQRVLQKQGIKFKLGTKVTSATRNGDGPV-EIEVENA---KTGKK-------ETLECDVLLVSIGRRPFTE 317 (506)
T ss_pred HHHHHHhcCceeEeccEEEEeeccCCCce-EEEEEec---CCCce-------eEEEeeEEEEEccCccccc
Confidence 33444568999999999999998767644 4555542 44543 5899999999999887664
No 258
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=86.79 E-value=3.6 Score=40.09 Aligned_cols=70 Identities=21% Similarity=0.248 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcccchHHHh
Q psy9486 69 VVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLTKSLSS 148 (165)
Q Consensus 69 ~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l~~~l~~ 148 (165)
+...+.++.++.||++++++.+.++.- ++++.+|+.... +|+ +..+.||.|++|.|..... +|.+
T Consensus 353 ~~~~l~~~L~~~GV~i~~~~~v~~i~g--~~~v~~V~l~~~----~g~-------~~~i~~D~V~va~G~~Pnt--~L~~ 417 (985)
T TIGR01372 353 VSPEARAEARELGIEVLTGHVVAATEG--GKRVSGVAVARN----GGA-------GQRLEADALAVSGGWTPVV--HLFS 417 (985)
T ss_pred hhHHHHHHHHHcCCEEEcCCeEEEEec--CCcEEEEEEEec----CCc-------eEEEECCEEEEcCCcCchh--HHHH
Confidence 445667778889999999999999854 466777776521 121 3579999999999988754 4555
Q ss_pred hcCCC
Q psy9486 149 RFNLR 153 (165)
Q Consensus 149 ~~gl~ 153 (165)
..|..
T Consensus 418 ~lg~~ 422 (985)
T TIGR01372 418 QRGGK 422 (985)
T ss_pred hcCCC
Confidence 56654
No 259
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=86.64 E-value=4.8 Score=34.60 Aligned_cols=57 Identities=19% Similarity=0.228 Sum_probs=38.3
Q ss_pred hHHHHHHHHHHHHHCCC-EEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCC
Q psy9486 66 LGHVVKWLGEQAEAMGV-EIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH 139 (165)
Q Consensus 66 r~~~d~~L~~~A~~~Gv-~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~ 139 (165)
+.-+..++..-++.++. +|+++++|++|..+ ++. +.|.+.+ |.++.||.||.|.-..
T Consensus 217 ~~G~~~l~~~l~~~l~~~~i~~~~~V~~i~~~-~~~-~~v~~~~---------------g~~~~~d~vI~a~p~~ 274 (451)
T PRK11883 217 KGGLQSLIEALEEKLPAGTIHKGTPVTKIDKS-GDG-YEIVLSN---------------GGEIEADAVIVAVPHP 274 (451)
T ss_pred ccHHHHHHHHHHHhCcCCeEEeCCEEEEEEEc-CCe-EEEEECC---------------CCEEEcCEEEECCCHH
Confidence 34444444444445554 89999999999886 343 3455544 3579999999997754
No 260
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=86.60 E-value=4.1 Score=36.35 Aligned_cols=60 Identities=18% Similarity=0.215 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486 69 VVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL 142 (165)
Q Consensus 69 ~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l 142 (165)
+-.++.+..++.||+|++++.+.++... ++. ..|...+ |+. +.++.++.||.|.|.....
T Consensus 222 ~~~~l~~~L~~~gV~i~~~~~v~~v~~~-~~~-~~v~~~~------~~~------~~~i~~D~vl~a~G~~pn~ 281 (484)
T TIGR01438 222 CANKVGEHMEEHGVKFKRQFVPIKVEQI-EAK-VKVTFTD------STN------GIEEEYDTVLLAIGRDACT 281 (484)
T ss_pred HHHHHHHHHHHcCCEEEeCceEEEEEEc-CCe-EEEEEec------CCc------ceEEEeCEEEEEecCCcCC
Confidence 4456667778899999999999998764 333 2344432 110 1379999999999988765
No 261
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=86.31 E-value=3.6 Score=40.07 Aligned_cols=67 Identities=16% Similarity=0.093 Sum_probs=44.0
Q ss_pred HHHHHHCCCEEecCCceeEEEEcC-CCcEEEEEEccc--c-ccCCCCCCCCCCcC--eEEEcCEEEEcccCCcc
Q psy9486 74 GEQAEAMGVEIYPGIPASEVLYHG-DGSVKGIATGDV--G-IAKDGSPKDTFARG--MELHAKVTIFAEGCHGH 141 (165)
Q Consensus 74 ~~~A~~~Gv~i~~~~~v~~i~~~~-~g~V~GV~~~~~--g-~~~~g~~~~~~~~g--~~i~Ak~VI~A~G~~s~ 141 (165)
.+.|.+.||++++.+.+++++-++ +++|.+|++..+ | -|.+|+..+.. +| .++.||.||+|.|....
T Consensus 491 ~~~a~eeGV~~~~~~~p~~i~~d~~~~~V~~v~~~~~~l~~~d~~Gr~~~~~-~G~e~~i~aD~VI~AiG~~p~ 563 (944)
T PRK12779 491 LHHALEEGINLAVLRAPREFIGDDHTHFVTHALLDVNELGEPDKSGRRSPKP-TGEIERVPVDLVIMALGNTAN 563 (944)
T ss_pred HHHHHHCCCEEEeCcceEEEEecCCCCEEEEEEEEEEEeccccCcCceeeec-CCceEEEECCEEEEcCCcCCC
Confidence 455778899999999999997652 347888765421 0 12334321111 12 36999999999998764
No 262
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=85.65 E-value=2.2 Score=37.04 Aligned_cols=53 Identities=15% Similarity=0.176 Sum_probs=35.6
Q ss_pred HHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEE--cCEEEEcccCCcc
Q psy9486 73 LGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELH--AKVTIFAEGCHGH 141 (165)
Q Consensus 73 L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~--Ak~VI~A~G~~s~ 141 (165)
..+..++.|++++.++.|.+|..+ +.. |.+.+. .+ +..+. +|.+|+|+|+...
T Consensus 62 ~~~~~~~~gv~~~~~~~V~~id~~-~~~---v~~~~~---~~---------~~~~~~~yd~lviAtG~~~~ 116 (444)
T PRK09564 62 TPEEFIKSGIDVKTEHEVVKVDAK-NKT---ITVKNL---KT---------GSIFNDTYDKLMIATGARPI 116 (444)
T ss_pred CHHHHHHCCCeEEecCEEEEEECC-CCE---EEEEEC---CC---------CCEEEecCCEEEECCCCCCC
Confidence 345567789999999999999764 332 333220 01 12455 9999999998753
No 263
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=85.61 E-value=4.4 Score=35.79 Aligned_cols=54 Identities=22% Similarity=0.259 Sum_probs=33.4
Q ss_pred HHHHHHHHCCCEEecCCceeEEE--EcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcc
Q psy9486 72 WLGEQAEAMGVEIYPGIPASEVL--YHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH 141 (165)
Q Consensus 72 ~L~~~A~~~Gv~i~~~~~v~~i~--~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~ 141 (165)
.+.+.+++.||+++.+.. ..+. .+ ... +-|.+.+ |+. .++.+|.||+|+|+...
T Consensus 97 ~~~~~l~~~gV~~~~g~~-~~~~~~~~-~~~-v~V~~~~------g~~-------~~~~~d~lViATGs~p~ 152 (466)
T PRK07845 97 DIRARLEREGVRVIAGRG-RLIDPGLG-PHR-VKVTTAD------GGE-------ETLDADVVLIATGASPR 152 (466)
T ss_pred HHHHHHHHCCCEEEEEEE-EEeecccC-CCE-EEEEeCC------Cce-------EEEecCEEEEcCCCCCC
Confidence 455667778999998753 3222 22 232 3344432 211 26999999999998763
No 264
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=84.92 E-value=3.1 Score=35.78 Aligned_cols=44 Identities=14% Similarity=0.198 Sum_probs=33.6
Q ss_pred HHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCc
Q psy9486 78 EAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG 140 (165)
Q Consensus 78 ~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s 140 (165)
.+.|++++.++.|..+-.+ +. -|.+.+ |.++.+|.+|+|+|+..
T Consensus 69 ~~~~i~~~~g~~V~~id~~-~~---~v~~~~---------------g~~~~yd~LViATGs~~ 112 (396)
T PRK09754 69 QENNVHLHSGVTIKTLGRD-TR---ELVLTN---------------GESWHWDQLFIATGAAA 112 (396)
T ss_pred HHCCCEEEcCCEEEEEECC-CC---EEEECC---------------CCEEEcCEEEEccCCCC
Confidence 4679999999999998664 23 244443 35799999999999886
No 265
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=84.79 E-value=4.7 Score=33.73 Aligned_cols=59 Identities=25% Similarity=0.277 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEE--EEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcc
Q psy9486 67 GHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKG--IATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH 141 (165)
Q Consensus 67 ~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~G--V~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~ 141 (165)
..+-..+.+..++.||++++++.+.++... .+.+.. +...+ +..+.++.++.+.|....
T Consensus 178 ~~~~~~~~~~l~~~gi~~~~~~~~~~i~~~-~~~~~~~~~~~~~---------------~~~~~~d~~~~~~g~~p~ 238 (415)
T COG0446 178 PEVAEELAELLEKYGVELLLGTKVVGVEGK-GNTLVVERVVGID---------------GEEIKADLVIIGPGERPN 238 (415)
T ss_pred HHHHHHHHHHHHHCCcEEEeCCceEEEEcc-cCcceeeEEEEeC---------------CcEEEeeEEEEeeccccc
Confidence 678889999999999999999999999774 343333 23332 358999999999998884
No 266
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=84.76 E-value=3.5 Score=36.98 Aligned_cols=62 Identities=18% Similarity=0.171 Sum_probs=44.6
Q ss_pred HHHHHHHHHH-CCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486 70 VKWLGEQAEA-MGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL 142 (165)
Q Consensus 70 d~~L~~~A~~-~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l 142 (165)
+..|.++.++ .||++++++.++++.-+ ++++.+|.+.+. .+|+. .++.+|.|+.|.|.....
T Consensus 389 ~~~l~~~l~~~~gI~i~~~~~v~~i~~~-~g~v~~v~~~~~---~~g~~-------~~i~~D~v~~~~G~~p~~ 451 (517)
T PRK15317 389 DQVLQDKLRSLPNVTIITNAQTTEVTGD-GDKVTGLTYKDR---TTGEE-------HHLELEGVFVQIGLVPNT 451 (517)
T ss_pred cHHHHHHHhcCCCcEEEECcEEEEEEcC-CCcEEEEEEEEC---CCCcE-------EEEEcCEEEEeECCccCc
Confidence 3445555555 59999999999999764 578888876531 12321 369999999999988743
No 267
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=84.75 E-value=2.1 Score=36.11 Aligned_cols=54 Identities=13% Similarity=0.035 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcc
Q psy9486 68 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH 141 (165)
Q Consensus 68 ~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~ 141 (165)
++...+.+.+++.|++++.+ +|+.|..+ ++ .|.+.+ |.++..|.+|+|+|+...
T Consensus 55 ~~~~~~~~~~~~~gv~~~~~-~v~~id~~--~~--~V~~~~---------------g~~~~yD~LviAtG~~~~ 108 (364)
T TIGR03169 55 EIRIDLRRLARQAGARFVIA-EATGIDPD--RR--KVLLAN---------------RPPLSYDVLSLDVGSTTP 108 (364)
T ss_pred HhcccHHHHHHhcCCEEEEE-EEEEEecc--cC--EEEECC---------------CCcccccEEEEccCCCCC
Confidence 33334556677889999875 78888664 33 355554 347999999999998764
No 268
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=84.73 E-value=2.8 Score=39.75 Aligned_cols=49 Identities=20% Similarity=0.262 Sum_probs=36.6
Q ss_pred HHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcc
Q psy9486 74 GEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH 141 (165)
Q Consensus 74 ~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~ 141 (165)
.+..++.|++++.+++|+.|..+ .+ -|.+.+ |.++.+|.+|+|+|+...
T Consensus 61 ~~~~~~~gv~~~~g~~V~~Id~~--~k--~V~~~~---------------g~~~~yD~LVlATGs~p~ 109 (785)
T TIGR02374 61 KDWYEKHGITLYTGETVIQIDTD--QK--QVITDA---------------GRTLSYDKLILATGSYPF 109 (785)
T ss_pred HHHHHHCCCEEEcCCeEEEEECC--CC--EEEECC---------------CcEeeCCEEEECCCCCcC
Confidence 34456789999999999999664 33 245543 357999999999998753
No 269
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=84.67 E-value=3.5 Score=37.49 Aligned_cols=69 Identities=14% Similarity=0.169 Sum_probs=48.7
Q ss_pred HHHHHHH-CCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcccchHHHhhcC
Q psy9486 73 LGEQAEA-MGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLTKSLSSRFN 151 (165)
Q Consensus 73 L~~~A~~-~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l~~~l~~~~g 151 (165)
+...|.+ -+..|.+++.|+.|+++ .++++||..... ++.+. -..+.++.||+|+|+.. +.+|....|
T Consensus 208 ~l~~a~~~~nl~v~t~a~v~ri~~~-~~r~~gv~~~~~----~~~~~-----~~~~a~~~viL~AGai~--Sp~LL~~Sg 275 (542)
T COG2303 208 YLKPALKRPNLTLLTGARVRRILLE-GDRAVGVEVEIG----DGGTI-----ETAVAAREVVLAAGAIN--SPKLLLLSG 275 (542)
T ss_pred cchhHhcCCceEEecCCEEEEEEEE-CCeeEEEEEEeC----CCCce-----EEEecCceEEEeccccC--CHHHHHhcC
Confidence 3444555 55999999999999997 789999888741 12111 13567899999999776 567666666
Q ss_pred CC
Q psy9486 152 LR 153 (165)
Q Consensus 152 l~ 153 (165)
+-
T Consensus 276 ig 277 (542)
T COG2303 276 IG 277 (542)
T ss_pred CC
Confidence 53
No 270
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=83.99 E-value=5 Score=34.81 Aligned_cols=56 Identities=7% Similarity=0.183 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHCC-CEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCC
Q psy9486 67 GHVVKWLGEQAEAMG-VEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH 139 (165)
Q Consensus 67 ~~~d~~L~~~A~~~G-v~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~ 139 (165)
.-+..+.-..+++++ ++|+++++|+.|..+ ++.+ .|++.+ |..+.||.||+|.-..
T Consensus 222 gG~~~l~~~l~~~l~~~~i~~~~~V~~I~~~-~~~~-~v~~~~---------------g~~~~ad~VI~t~P~~ 278 (462)
T TIGR00562 222 TGLETLPEEIEKRLKLTKVYKGTKVTKLSHR-GSNY-TLELDN---------------GVTVETDSVVVTAPHK 278 (462)
T ss_pred hhHHHHHHHHHHHhccCeEEcCCeEEEEEec-CCcE-EEEECC---------------CcEEEcCEEEECCCHH
Confidence 334433333344454 799999999999885 3433 355543 3479999999998754
No 271
>PLN02676 polyamine oxidase
Probab=83.50 E-value=4.9 Score=35.94 Aligned_cols=42 Identities=21% Similarity=0.208 Sum_probs=32.0
Q ss_pred CCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCC
Q psy9486 81 GVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH 139 (165)
Q Consensus 81 Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~ 139 (165)
+..|.++++|++|..++ +.| -|.+.+ |.+++|+.||+|....
T Consensus 244 ~~~I~l~~~V~~I~~~~-~gV-~V~~~~---------------G~~~~a~~VIvtvPl~ 285 (487)
T PLN02676 244 DPRLKLNKVVREISYSK-NGV-TVKTED---------------GSVYRAKYVIVSVSLG 285 (487)
T ss_pred CCceecCCEeeEEEEcC-CcE-EEEECC---------------CCEEEeCEEEEccChH
Confidence 37899999999998863 333 356654 4579999999999744
No 272
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=83.46 E-value=5.8 Score=36.83 Aligned_cols=68 Identities=21% Similarity=0.159 Sum_probs=41.1
Q ss_pred HHHHHHHCCCEEecCCceeEEEEcCCCcE--EEEEEccccccCCCCCCCCCCcCe--EEEcCEEEEcccCCcc
Q psy9486 73 LGEQAEAMGVEIYPGIPASEVLYHGDGSV--KGIATGDVGIAKDGSPKDTFARGM--ELHAKVTIFAEGCHGH 141 (165)
Q Consensus 73 L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V--~GV~~~~~g~~~~g~~~~~~~~g~--~i~Ak~VI~A~G~~s~ 141 (165)
..++|.+.||+|++.+.+.++.-+ ++++ ..++......|.+|+..+.+..|. .+.+|.||+|.|....
T Consensus 367 ei~~a~~eGV~i~~~~~~~~i~~~-~~~~~v~~~~~~~~~~d~~G~~~~~~~~g~~~~i~~D~VI~AiG~~p~ 438 (652)
T PRK12814 367 EIEEALAEGVSLRELAAPVSIERS-EGGLELTAIKMQQGEPDESGRRRPVPVEGSEFTLQADTVISAIGQQVD 438 (652)
T ss_pred HHHHHHHcCCcEEeccCcEEEEec-CCeEEEEEEEEEecccCCCCCCcceecCCceEEEECCEEEECCCCcCC
Confidence 356667889999999999998764 4543 223222111123343222122232 5999999999997654
No 273
>PRK07846 mycothione reductase; Reviewed
Probab=83.14 E-value=5.7 Score=35.00 Aligned_cols=48 Identities=19% Similarity=0.165 Sum_probs=35.9
Q ss_pred HHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486 78 EAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL 142 (165)
Q Consensus 78 ~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l 142 (165)
.+.|++++++++++++..+ ++.+ .|.+.+ |.++.++.||+|+|.....
T Consensus 217 ~~~~v~i~~~~~v~~i~~~-~~~v-~v~~~~---------------g~~i~~D~vl~a~G~~pn~ 264 (451)
T PRK07846 217 ASKRWDVRLGRNVVGVSQD-GSGV-TLRLDD---------------GSTVEADVLLVATGRVPNG 264 (451)
T ss_pred HhcCeEEEeCCEEEEEEEc-CCEE-EEEECC---------------CcEeecCEEEEEECCccCc
Confidence 4578999999999999764 3332 344433 3579999999999998765
No 274
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=82.81 E-value=3.5 Score=35.67 Aligned_cols=48 Identities=13% Similarity=0.142 Sum_probs=32.9
Q ss_pred HHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEE--cCEEEEcccCCc
Q psy9486 77 AEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELH--AKVTIFAEGCHG 140 (165)
Q Consensus 77 A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~--Ak~VI~A~G~~s 140 (165)
+++.|++++.++.|+.+-.+ +..| -+.... + +..+. +|.+|+|+|+..
T Consensus 54 ~~~~gv~~~~~~~V~~id~~-~~~v-~~~~~~-----~---------~~~~~~~yd~lIiATG~~p 103 (427)
T TIGR03385 54 IKKRGIDVKTNHEVIEVNDE-RQTV-VVRNNK-----T---------NETYEESYDYLILSPGASP 103 (427)
T ss_pred HHhcCCeEEecCEEEEEECC-CCEE-EEEECC-----C---------CCEEecCCCEEEECCCCCC
Confidence 36789999999999998653 3322 232221 1 23577 999999999865
No 275
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=82.73 E-value=6.3 Score=33.31 Aligned_cols=70 Identities=23% Similarity=0.336 Sum_probs=43.1
Q ss_pred HHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEcccccc---CCCCCCC--CCCcCeEEEcCEEEEcccCCccc
Q psy9486 71 KWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIA---KDGSPKD--TFARGMELHAKVTIFAEGCHGHL 142 (165)
Q Consensus 71 ~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~---~~g~~~~--~~~~g~~i~Ak~VI~A~G~~s~l 142 (165)
..+.++.++.|+++++++.+.++.- ++++.+|+..+...+ ..+.+.. .-..+..+.++.||.|.|.....
T Consensus 214 ~~~~~~l~~~gi~i~~~~~v~~i~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~D~vi~a~G~~p~~ 288 (352)
T PRK12770 214 KYEIERLIARGVEFLELVTPVRIIG--EGRVEGVELAKMRLGEPDESGRPRPVPIPGSEFVLEADTVVFAIGEIPTP 288 (352)
T ss_pred HHHHHHHHHcCCEEeeccCceeeec--CCcEeEEEEEEEEecCcCcccCcCceecCCCeEEEECCEEEECcccCCCc
Confidence 3556667889999999999999853 356666665321100 0000000 00012479999999999988743
No 276
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=82.10 E-value=5.6 Score=36.05 Aligned_cols=58 Identities=14% Similarity=0.235 Sum_probs=39.7
Q ss_pred HHHHHHHCCCEEecCCceeEEEEcCC---CcEEEEEEccccccCCCCCCCCCCcCeEEEc-CEEEEcccCCc
Q psy9486 73 LGEQAEAMGVEIYPGIPASEVLYHGD---GSVKGIATGDVGIAKDGSPKDTFARGMELHA-KVTIFAEGCHG 140 (165)
Q Consensus 73 L~~~A~~~Gv~i~~~~~v~~i~~~~~---g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~A-k~VI~A~G~~s 140 (165)
|.+-.++.||++.++++|++|.++.+ ..+.++.... +|... ...+.. |+|++..|.-.
T Consensus 213 l~~~L~~~GV~F~~~t~V~di~~~~~~~~~~~~~i~~~~-----~g~~~-----~i~l~~~DlV~vT~GS~t 274 (500)
T PF06100_consen 213 LIRYLKSQGVDFRFNTKVTDIDFDITGDKKTATRIHIEQ-----DGKEE-----TIDLGPDDLVFVTNGSMT 274 (500)
T ss_pred HHHHHHHCCCEEECCCEEEEEEEEccCCCeeEEEEEEEc-----CCCee-----EEEeCCCCEEEEECCccc
Confidence 67778899999999999999998532 2445565553 44332 133433 88998888543
No 277
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=81.76 E-value=6.6 Score=34.56 Aligned_cols=49 Identities=20% Similarity=0.170 Sum_probs=36.0
Q ss_pred HHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486 77 AEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL 142 (165)
Q Consensus 77 A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l 142 (165)
..+.|+++++++.|+++..+ ++.+ .|.+.+ |.++.++.||+|.|.....
T Consensus 219 ~~~~gI~i~~~~~V~~i~~~-~~~v-~v~~~~---------------g~~i~~D~vl~a~G~~pn~ 267 (452)
T TIGR03452 219 IAKKKWDIRLGRNVTAVEQD-GDGV-TLTLDD---------------GSTVTADVLLVATGRVPNG 267 (452)
T ss_pred HHhcCCEEEeCCEEEEEEEc-CCeE-EEEEcC---------------CCEEEcCEEEEeeccCcCC
Confidence 34569999999999999764 3332 244432 3479999999999988755
No 278
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=81.55 E-value=7.3 Score=34.10 Aligned_cols=51 Identities=25% Similarity=0.283 Sum_probs=32.5
Q ss_pred HHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcc
Q psy9486 70 VKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH 141 (165)
Q Consensus 70 d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~ 141 (165)
...+.+..++.||+++.+ ++..+ + ...+ -|. .+ |.++.++.||+|+|+...
T Consensus 93 ~~~~~~~l~~~gV~~~~g-~~~~v--~-~~~v-~v~-~~---------------g~~~~~d~lIiATGs~p~ 143 (446)
T TIGR01424 93 SGLYKRLLANAGVELLEG-RARLV--G-PNTV-EVL-QD---------------GTTYTAKKILIAVGGRPQ 143 (446)
T ss_pred HHHHHHHHHhCCcEEEEE-EEEEe--c-CCEE-EEe-cC---------------CeEEEcCEEEEecCCcCC
Confidence 345566677889999876 44443 2 2222 222 11 247999999999998753
No 279
>PRK10262 thioredoxin reductase; Provisional
Probab=81.39 E-value=9.5 Score=31.58 Aligned_cols=57 Identities=16% Similarity=0.133 Sum_probs=39.0
Q ss_pred EhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCc
Q psy9486 65 RLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG 140 (165)
Q Consensus 65 ~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s 140 (165)
+-..+-+++.+.+...++++..+ .|..+... ++. .-+.+.. ..+.+|.||+|+|.+.
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~-~v~~v~~~-~~~-~~v~~~~----------------~~~~~d~vilAtG~~~ 117 (321)
T PRK10262 61 TGPLLMERMHEHATKFETEIIFD-HINKVDLQ-NRP-FRLTGDS----------------GEYTCDALIIATGASA 117 (321)
T ss_pred CHHHHHHHHHHHHHHCCCEEEee-EEEEEEec-CCe-EEEEecC----------------CEEEECEEEECCCCCC
Confidence 34456677888888899988775 56666654 332 2233221 2689999999999875
No 280
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=81.34 E-value=4.1 Score=39.19 Aligned_cols=48 Identities=19% Similarity=0.169 Sum_probs=35.5
Q ss_pred HHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcc
Q psy9486 75 EQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH 141 (165)
Q Consensus 75 ~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~ 141 (165)
+..++.|++++.+++|..+-.+ .+ -|.+.+ |.++.+|.+|+|+|++..
T Consensus 67 ~~~~~~gI~~~~g~~V~~Id~~--~~--~V~~~~---------------G~~i~yD~LVIATGs~p~ 114 (847)
T PRK14989 67 GFYEKHGIKVLVGERAITINRQ--EK--VIHSSA---------------GRTVFYDKLIMATGSYPW 114 (847)
T ss_pred HHHHhCCCEEEcCCEEEEEeCC--Cc--EEEECC---------------CcEEECCEEEECCCCCcC
Confidence 3455689999999999988553 33 234443 357999999999998764
No 281
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=80.93 E-value=8.9 Score=33.94 Aligned_cols=61 Identities=11% Similarity=0.093 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcccc
Q psy9486 69 VVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLT 143 (165)
Q Consensus 69 ~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l~ 143 (165)
+-..+.+..++. +++++++.|+++..+ ++.+ .|...+ .+|+ ..++.++.||+|.|......
T Consensus 217 ~~~~~~~~l~~~-v~i~~~~~v~~i~~~-~~~~-~v~~~~----~~~~-------~~~i~~D~vi~a~G~~pn~~ 277 (471)
T PRK06467 217 IVKVFTKRIKKQ-FNIMLETKVTAVEAK-EDGI-YVTMEG----KKAP-------AEPQRYDAVLVAVGRVPNGK 277 (471)
T ss_pred HHHHHHHHHhhc-eEEEcCCEEEEEEEc-CCEE-EEEEEe----CCCc-------ceEEEeCEEEEeecccccCC
Confidence 344556666667 999999999999764 3332 344332 1121 14699999999999988764
No 282
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=80.29 E-value=3.3 Score=36.46 Aligned_cols=59 Identities=19% Similarity=0.226 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHCCCEEecCCceeEEEEc-CCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCc
Q psy9486 67 GHVVKWLGEQAEAMGVEIYPGIPASEVLYH-GDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG 140 (165)
Q Consensus 67 ~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~-~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s 140 (165)
.+|...|.++.++.-|+++...+++++.-- +.+..+-|++.+ |-.++||-||+|+|++=
T Consensus 266 pkl~~ale~Hv~~Y~vDimn~qra~~l~~a~~~~~l~ev~l~n---------------GavLkaktvIlstGArW 325 (520)
T COG3634 266 PKLAAALEAHVKQYDVDVMNLQRASKLEPAAVEGGLIEVELAN---------------GAVLKARTVILATGARW 325 (520)
T ss_pred hHHHHHHHHHHhhcCchhhhhhhhhcceecCCCCccEEEEecC---------------CceeccceEEEecCcch
Confidence 467888999999999999999999999762 235566787775 56899999999999863
No 283
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=79.40 E-value=9.5 Score=34.70 Aligned_cols=65 Identities=22% Similarity=0.199 Sum_probs=46.5
Q ss_pred EEhHHHHHHHHHHHHHCCC--EEecCCceeEEEEcCCCc---EEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccC
Q psy9486 64 VRLGHVVKWLGEQAEAMGV--EIYPGIPASEVLYHGDGS---VKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGC 138 (165)
Q Consensus 64 i~r~~~d~~L~~~A~~~Gv--~i~~~~~v~~i~~~~~g~---V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~ 138 (165)
.++.++-++|.+-|+.-|. .|.++|+|.++...++.. -.-|.+.+ +|+. .+-..|.||+|+|.
T Consensus 81 ~~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~-----~g~~-------~~~~fD~VvvatG~ 148 (531)
T PF00743_consen 81 PSHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTEN-----DGKE-------ETEEFDAVVVATGH 148 (531)
T ss_dssp EBHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETT-----TTEE-------EEEEECEEEEEE-S
T ss_pred CCHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeec-----CCeE-------EEEEeCeEEEcCCC
Confidence 5889999999999999776 688999999998754422 23455543 3321 23456999999998
Q ss_pred Cc
Q psy9486 139 HG 140 (165)
Q Consensus 139 ~s 140 (165)
.+
T Consensus 149 ~~ 150 (531)
T PF00743_consen 149 FS 150 (531)
T ss_dssp SS
T ss_pred cC
Confidence 76
No 284
>PLN02268 probable polyamine oxidase
Probab=79.17 E-value=5.9 Score=34.27 Aligned_cols=42 Identities=19% Similarity=0.256 Sum_probs=31.2
Q ss_pred CCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccC
Q psy9486 80 MGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGC 138 (165)
Q Consensus 80 ~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~ 138 (165)
.|++|+++++|+.|..++ +.| -|.+.+ |..+.||.||+|.-.
T Consensus 209 ~~~~i~~~~~V~~i~~~~-~~v-~v~~~~---------------g~~~~ad~VIva~P~ 250 (435)
T PLN02268 209 KGLDIRLNHRVTKIVRRY-NGV-KVTVED---------------GTTFVADAAIIAVPL 250 (435)
T ss_pred ccCceeCCCeeEEEEEcC-CcE-EEEECC---------------CcEEEcCEEEEecCH
Confidence 477899999999998864 333 355543 347999999999743
No 285
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=79.13 E-value=8.1 Score=34.15 Aligned_cols=52 Identities=21% Similarity=0.172 Sum_probs=31.1
Q ss_pred HHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCc
Q psy9486 73 LGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG 140 (165)
Q Consensus 73 L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s 140 (165)
+.+..+..||+++.+. +..+..++++.. |.+.. .+ +.++++|.||+|+|+..
T Consensus 106 ~~~~~~~~~v~~~~g~-~~~~~~~~~~~~--v~v~~----~~---------~~~~~~d~lViATGs~p 157 (475)
T PRK06327 106 IEGLFKKNKITVLKGR-GSFVGKTDAGYE--IKVTG----ED---------ETVITAKHVIIATGSEP 157 (475)
T ss_pred HHHHHHhCCCEEEEEE-EEEecCCCCCCE--EEEec----CC---------CeEEEeCEEEEeCCCCC
Confidence 3444566799998775 333322222332 33322 01 24799999999999876
No 286
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=78.66 E-value=10 Score=37.42 Aligned_cols=77 Identities=18% Similarity=0.069 Sum_probs=44.5
Q ss_pred HHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCC-CCcCeEEEcCEEEEcccCCcccchHHHhhcC
Q psy9486 73 LGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDT-FARGMELHAKVTIFAEGCHGHLTKSLSSRFN 151 (165)
Q Consensus 73 L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~-~~~g~~i~Ak~VI~A~G~~s~l~~~l~~~~g 151 (165)
..+.|.+.||+++..+.+.++.- +|++......-...+.+|..... -..+.++.||.||.|.|..... .+.+..|
T Consensus 713 Ele~AleeGVe~~~~~~p~~I~~--dG~l~~~~~~lg~~d~~Gr~~~v~tg~~~~I~aD~VIvAIG~~Pnt--elle~~G 788 (1019)
T PRK09853 713 EYEEALEDGVEFKELLNPESFDA--DGTLTCRVMKLGEPDESGRRRPVETGETVTLEADTVITAIGEQVDT--ELLKANG 788 (1019)
T ss_pred HHHHHHHcCCEEEeCCceEEEEc--CCcEEEEEEEeecccCCCceEEeeCCCeEEEEeCEEEECCCCcCCh--hHHHhcC
Confidence 35566678999999999988853 45543222110001122321100 0123579999999999987654 3445566
Q ss_pred CC
Q psy9486 152 LR 153 (165)
Q Consensus 152 l~ 153 (165)
+.
T Consensus 789 L~ 790 (1019)
T PRK09853 789 IP 790 (1019)
T ss_pred cc
Confidence 53
No 287
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=78.65 E-value=12 Score=35.15 Aligned_cols=71 Identities=14% Similarity=0.071 Sum_probs=40.6
Q ss_pred HHHHHHHHH-HHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCC---CCCCCcCeEEEcCEEEEcccCCccc
Q psy9486 69 VVKWLGEQA-EAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSP---KDTFARGMELHAKVTIFAEGCHGHL 142 (165)
Q Consensus 69 ~d~~L~~~A-~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~---~~~~~~g~~i~Ak~VI~A~G~~s~l 142 (165)
+.+++.+.. ++.||+|++++.|.++..++++..+-|...+. .+++. ...+....++.+|.||+|+|.....
T Consensus 355 is~~l~~~ll~~~GV~I~~~~~V~~I~~~~~~~~v~v~~~~~---~~~~~~~~~~~~~~~~~i~aD~VlvAtGr~Pnt 429 (659)
T PTZ00153 355 VAKYFERVFLKSKPVRVHLNTLIEYVRAGKGNQPVIIGHSER---QTGESDGPKKNMNDIKETYVDSCLVATGRKPNT 429 (659)
T ss_pred HHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEEEecc---ccccccccccccccceEEEcCEEEEEECcccCC
Confidence 344444443 46899999999999997643332222332210 01110 0000011369999999999998765
No 288
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=78.48 E-value=4.9 Score=36.71 Aligned_cols=71 Identities=17% Similarity=0.215 Sum_probs=49.8
Q ss_pred HHHHHHH-HCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc-chHHHhh
Q psy9486 72 WLGEQAE-AMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL-TKSLSSR 149 (165)
Q Consensus 72 ~L~~~A~-~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l-~~~l~~~ 149 (165)
-++.+.+ +.||.+.-| ++.+|....+++ ..|+..++ -.|++ .++.+|+||+|+|-..+- ++++.+.
T Consensus 419 efY~~~Q~~~gV~fIRG-rvaei~e~p~~~-l~V~~EdT---l~g~~-------~e~~~DLVVLa~Gmep~~g~~kia~i 486 (622)
T COG1148 419 EFYVRSQEDYGVRFIRG-RVAEIAEFPKKK-LIVRVEDT---LTGEV-------KEIEADLVVLATGMEPSEGAKKIAKI 486 (622)
T ss_pred HHHHhhhhhhchhhhcC-ChHHheeCCCCe-eEEEEEec---cCccc-------eecccceEEEeeccccCcchHHHHHh
Confidence 3466666 799999766 777787765666 34555542 34554 389999999999976433 4777778
Q ss_pred cCCCC
Q psy9486 150 FNLRG 154 (165)
Q Consensus 150 ~gl~~ 154 (165)
+||..
T Consensus 487 LgL~~ 491 (622)
T COG1148 487 LGLSQ 491 (622)
T ss_pred cCccc
Confidence 88864
No 289
>KOG3855|consensus
Probab=77.95 E-value=11 Score=33.67 Aligned_cols=70 Identities=16% Similarity=0.218 Sum_probs=51.6
Q ss_pred cEEEEhHHHHHHHHH---HHHHCCCEEecCCceeEEEE------cCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCE
Q psy9486 61 NYVVRLGHVVKWLGE---QAEAMGVEIYPGIPASEVLY------HGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKV 131 (165)
Q Consensus 61 ~~~i~r~~~d~~L~~---~A~~~Gv~i~~~~~v~~i~~------~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~ 131 (165)
+|++.-..+-.-|+. .++...|+|.+...+.++.+ ++++-.+-+.+.+ |..+..|.
T Consensus 144 a~iien~nIq~sL~~s~~~s~~~nv~vi~~~k~~~~~~~~~l~~~~n~~~~~i~l~d---------------g~~~~~~L 208 (481)
T KOG3855|consen 144 AFIIENDNIQCSLYNSQLDSESDNVTVINMAKVIDCTIPEYLIKNDNGMWFHITLTD---------------GINFATDL 208 (481)
T ss_pred eeeeehhHHHHHHHHHHHhhhcCceeeecccceeeeccccccCCCCCcceEEEEecc---------------Cceeeece
Confidence 678776665555553 23346899999999888765 2356667677765 56899999
Q ss_pred EEEcccCCcccchH
Q psy9486 132 TIFAEGCHGHLTKS 145 (165)
Q Consensus 132 VI~A~G~~s~l~~~ 145 (165)
.|.|+|.+|.+.+.
T Consensus 209 LigAdg~Ns~vR~~ 222 (481)
T KOG3855|consen 209 LIGADGFNSVVRKA 222 (481)
T ss_pred eeccccccchhhhh
Confidence 99999999988554
No 290
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=77.88 E-value=11 Score=33.03 Aligned_cols=61 Identities=16% Similarity=0.139 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcccc
Q psy9486 68 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLT 143 (165)
Q Consensus 68 ~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l~ 143 (165)
.+...+.+..++. ++|++++.+.++..+ ++ .+|.... .+|+ +.++.++.||+|.|......
T Consensus 211 ~~~~~~~~~l~~~-I~i~~~~~v~~i~~~-~~--~~v~~~~----~~~~-------~~~i~~D~vi~a~G~~p~~~ 271 (460)
T PRK06292 211 EVSKQAQKILSKE-FKIKLGAKVTSVEKS-GD--EKVEELE----KGGK-------TETIEADYVLVATGRRPNTD 271 (460)
T ss_pred HHHHHHHHHHhhc-cEEEcCCEEEEEEEc-CC--ceEEEEE----cCCc-------eEEEEeCEEEEccCCccCCC
Confidence 3455666667778 999999999999764 22 1232211 1121 24799999999999887664
No 291
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=77.52 E-value=9.7 Score=33.54 Aligned_cols=73 Identities=21% Similarity=0.229 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccc---cccCCCCCCCCC-CcCeEEEcCEEEEcccCCccc
Q psy9486 68 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDV---GIAKDGSPKDTF-ARGMELHAKVTIFAEGCHGHL 142 (165)
Q Consensus 68 ~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~---g~~~~g~~~~~~-~~g~~i~Ak~VI~A~G~~s~l 142 (165)
-|.+.+.+..+.-=+++.+..+|..++.. +++|+||.-.-. .+ .-|.+-..- ....++.|..||+|+|.-+-.
T Consensus 154 pFvr~~re~~~~~~v~f~~RHrV~~l~~t-~grvtGv~GdVLeps~v-~RG~~SSR~~~GdFef~A~aviv~SGGIGGn 230 (552)
T COG3573 154 PFVRRLREAQRRGRVTFRFRHRVDGLTTT-GGRVTGVRGDVLEPSDV-ERGQPSSREVVGDFEFSASAVIVASGGIGGN 230 (552)
T ss_pred HHHHHHHHHHhCCceEEEeeeeccceEee-CCeEeeecccccCCCcc-ccCCCccceeecceEEeeeeEEEecCCcCCC
Confidence 35555444444445999999999999996 799999854210 00 001111000 012478999999999987766
No 292
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=77.40 E-value=9 Score=33.71 Aligned_cols=48 Identities=19% Similarity=0.236 Sum_probs=32.5
Q ss_pred HHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcc
Q psy9486 71 KWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH 141 (165)
Q Consensus 71 ~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~ 141 (165)
+++....++.||+++.++.+. .+ +.. |.+. +..+.+|.||+|+|+...
T Consensus 95 ~~~~~~l~~~gv~~~~g~~~~---~~-~~~---v~v~----------------~~~~~~d~vIiAtGs~p~ 142 (450)
T TIGR01421 95 GIYQKNLEKNKVDVIFGHARF---TK-DGT---VEVN----------------GRDYTAPHILIATGGKPS 142 (450)
T ss_pred HHHHHHHHhCCCEEEEEEEEE---cc-CCE---EEEC----------------CEEEEeCEEEEecCCCCC
Confidence 345666778899999987542 22 333 3332 247999999999998753
No 293
>KOG1399|consensus
Probab=76.60 E-value=13 Score=33.29 Aligned_cols=69 Identities=16% Similarity=0.085 Sum_probs=50.7
Q ss_pred CcEEEEhHHHHHHHHHHHHHCCC--EEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEccc
Q psy9486 60 GNYVVRLGHVVKWLGEQAEAMGV--EIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEG 137 (165)
Q Consensus 60 ~~~~i~r~~~d~~L~~~A~~~Gv--~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G 137 (165)
..|.-++.++.++|..-|+.-+. .|.+++.|..+....+|+ +.|.+.+. .+. .++.-+|.|++|+|
T Consensus 83 ~~~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gk-W~V~~~~~----~~~-------~~~~ifd~VvVctG 150 (448)
T KOG1399|consen 83 PRYFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGK-WRVTTKDN----GTQ-------IEEEIFDAVVVCTG 150 (448)
T ss_pred cccCCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccCCc-eeEEEecC----Ccc-------eeEEEeeEEEEccc
Confidence 46778888999999999999875 788888888886642244 45666541 111 14678899999999
Q ss_pred CCc
Q psy9486 138 CHG 140 (165)
Q Consensus 138 ~~s 140 (165)
.+.
T Consensus 151 h~~ 153 (448)
T KOG1399|consen 151 HYV 153 (448)
T ss_pred CcC
Confidence 983
No 294
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=75.95 E-value=9.2 Score=33.45 Aligned_cols=50 Identities=6% Similarity=0.027 Sum_probs=33.7
Q ss_pred HHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcc
Q psy9486 78 EAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH 141 (165)
Q Consensus 78 ~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~ 141 (165)
++.|++++.+++|.+|-.+ ++.+-+...+ +++ ..++.+|.+|+|+|+...
T Consensus 69 ~~~~i~v~~~~~V~~Id~~--~~~v~~~~~~-----~~~-------~~~~~yd~lviAtGs~~~ 118 (438)
T PRK13512 69 DRKQITVKTYHEVIAINDE--RQTVTVLNRK-----TNE-------QFEESYDKLILSPGASAN 118 (438)
T ss_pred HhCCCEEEeCCEEEEEECC--CCEEEEEECC-----CCc-------EEeeecCEEEECCCCCCC
Confidence 4579999999999999664 3333333321 111 125788999999998763
No 295
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=75.84 E-value=10 Score=33.52 Aligned_cols=48 Identities=19% Similarity=0.278 Sum_probs=29.7
Q ss_pred HHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCc
Q psy9486 75 EQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG 140 (165)
Q Consensus 75 ~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s 140 (165)
..+++.||+++.++.. .. +.+.+.|...+ |+. .++.+|.+|+|+|+..
T Consensus 101 ~~~~~~gV~~~~g~a~---~~--~~~~v~v~~~~------g~~-------~~~~~d~lViATGs~p 148 (471)
T PRK06467 101 GMAKGRKVTVVNGLGK---FT--GGNTLEVTGED------GKT-------TVIEFDNAIIAAGSRP 148 (471)
T ss_pred HHHHhCCCEEEEEEEE---Ec--cCCEEEEecCC------Cce-------EEEEcCEEEEeCCCCC
Confidence 3456679999987532 12 23323344322 211 3699999999999875
No 296
>PRK06116 glutathione reductase; Validated
Probab=75.36 E-value=12 Score=32.69 Aligned_cols=46 Identities=22% Similarity=0.290 Sum_probs=30.3
Q ss_pred HHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcc
Q psy9486 73 LGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH 141 (165)
Q Consensus 73 L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~ 141 (165)
+.+..++.||+++.++ +..+ + .. -|.+ + |.++.+|.+|+|+|+...
T Consensus 99 ~~~~l~~~gv~~~~g~-~~~v--~-~~---~v~~-~---------------g~~~~~d~lViATGs~p~ 144 (450)
T PRK06116 99 YRNGLENNGVDLIEGF-ARFV--D-AH---TVEV-N---------------GERYTADHILIATGGRPS 144 (450)
T ss_pred HHHHHHhCCCEEEEEE-EEEc--c-CC---EEEE-C---------------CEEEEeCEEEEecCCCCC
Confidence 3444567899999874 3333 2 22 2334 2 357999999999998764
No 297
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=75.06 E-value=9 Score=34.25 Aligned_cols=56 Identities=21% Similarity=0.252 Sum_probs=38.2
Q ss_pred EhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEccc
Q psy9486 65 RLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEG 137 (165)
Q Consensus 65 ~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G 137 (165)
-+.-+...+-.-+++..++|+++++|++|..+.++ .++.+.+ |.++.||.||.+.=
T Consensus 210 ~~gG~~~l~~al~~~l~~~i~~~~~V~~i~~~~~~--~~~~~~~---------------g~~~~~D~VI~t~p 265 (444)
T COG1232 210 LRGGLQSLIEALAEKLEAKIRTGTEVTKIDKKGAG--KTIVDVG---------------GEKITADGVISTAP 265 (444)
T ss_pred cCccHHHHHHHHHHHhhhceeecceeeEEEEcCCc--cEEEEcC---------------CceEEcceEEEcCC
Confidence 34455556555566677779999999999986222 2344443 46799999998754
No 298
>PLN02576 protoporphyrinogen oxidase
Probab=74.83 E-value=14 Score=32.55 Aligned_cols=48 Identities=15% Similarity=0.275 Sum_probs=31.4
Q ss_pred HHHCC-CEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEccc
Q psy9486 77 AEAMG-VEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEG 137 (165)
Q Consensus 77 A~~~G-v~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G 137 (165)
|+.++ .+|+++++|+.|..++++.+ .|.+.. .+|. ..+.||.||+|.=
T Consensus 246 a~~l~~~~i~l~~~V~~I~~~~~~~~-~v~~~~----~~g~--------~~~~ad~VI~a~P 294 (496)
T PLN02576 246 AKRLGKDKVKLNWKVLSLSKNDDGGY-SLTYDT----PEGK--------VNVTAKAVVMTAP 294 (496)
T ss_pred HHhhCcCcEEcCCEEEEEEECCCCcE-EEEEec----CCCc--------eeEEeCEEEECCC
Confidence 34466 68999999999988643322 343332 1121 2699999999874
No 299
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=74.70 E-value=17 Score=31.81 Aligned_cols=52 Identities=23% Similarity=0.180 Sum_probs=32.3
Q ss_pred HHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcc
Q psy9486 72 WLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH 141 (165)
Q Consensus 72 ~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~ 141 (165)
.+.+..++.||+++.++ +..+ + .+. +-|.+.+ |.. .++++|.||+|+|+...
T Consensus 99 ~~~~~~~~~~v~~~~g~-~~~~--~-~~~-~~v~~~~------g~~-------~~~~~d~lviATGs~p~ 150 (461)
T PRK05249 99 VRRGQYERNRVDLIQGR-ARFV--D-PHT-VEVECPD------GEV-------ETLTADKIVIATGSRPY 150 (461)
T ss_pred HHHHHHHHCCCEEEEEE-EEEe--c-CCE-EEEEeCC------Cce-------EEEEcCEEEEcCCCCCC
Confidence 45566778899999874 3222 2 233 2244432 211 26999999999997754
No 300
>PLN02507 glutathione reductase
Probab=74.48 E-value=17 Score=32.62 Aligned_cols=51 Identities=22% Similarity=0.346 Sum_probs=30.6
Q ss_pred HHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcc
Q psy9486 73 LGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH 141 (165)
Q Consensus 73 L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~ 141 (165)
+....++.||+++.+ .+..+ + ... +-|.+.+ |+. ..+.+|.+|+|+|+...
T Consensus 130 ~~~~l~~~gV~~i~g-~a~~v--d-~~~-v~V~~~~------g~~-------~~~~~d~LIIATGs~p~ 180 (499)
T PLN02507 130 YKRLLANAGVKLYEG-EGKIV--G-PNE-VEVTQLD------GTK-------LRYTAKHILIATGSRAQ 180 (499)
T ss_pred HHHHHHhCCcEEEEE-EEEEe--c-CCE-EEEEeCC------CcE-------EEEEcCEEEEecCCCCC
Confidence 344456689999877 34333 2 222 2344432 221 25899999999998753
No 301
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=73.55 E-value=18 Score=31.88 Aligned_cols=52 Identities=12% Similarity=0.130 Sum_probs=30.7
Q ss_pred HHHHHCCCEEecCCceeEEEEc---CCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCc
Q psy9486 75 EQAEAMGVEIYPGIPASEVLYH---GDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG 140 (165)
Q Consensus 75 ~~A~~~Gv~i~~~~~v~~i~~~---~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s 140 (165)
+..++.||+++.+. ++.+-.+ ++..-+-|.+.+ |. ..++.+|.+|+|+|+..
T Consensus 100 ~~~~~~gv~~~~g~-a~~i~~~~~~~~~~~~~v~~~~------g~-------~~~~~~d~lViATGs~p 154 (472)
T PRK05976 100 ALLKKGKIDVFHGI-GRILGPSIFSPMPGTVSVETET------GE-------NEMIIPENLLIATGSRP 154 (472)
T ss_pred HHHHhCCCEEEEEE-EEEeCCCCCcCCceEEEEEeCC------Cc-------eEEEEcCEEEEeCCCCC
Confidence 44566799999874 3333110 011123354432 21 14799999999999876
No 302
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=72.80 E-value=8.2 Score=32.99 Aligned_cols=48 Identities=21% Similarity=0.376 Sum_probs=28.7
Q ss_pred CCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccC
Q psy9486 80 MGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGC 138 (165)
Q Consensus 80 ~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~ 138 (165)
.-+.|+..+.|+++...++|.+. +.+.+. ..|+ ..++.+|.||+|||-
T Consensus 292 ~~~~l~~~~~v~~~~~~~~~~~~-l~~~~~---~~~~-------~~~~~~D~VilATGy 339 (341)
T PF13434_consen 292 GRLRLLPNTEVTSAEQDGDGGVR-LTLRHR---QTGE-------EETLEVDAVILATGY 339 (341)
T ss_dssp --SEEETTEEEEEEEEES-SSEE-EEEEET---TT---------EEEEEESEEEE---E
T ss_pred CCeEEeCCCEEEEEEECCCCEEE-EEEEEC---CCCC-------eEEEecCEEEEcCCc
Confidence 34899999999999887545443 444331 1222 257999999999995
No 303
>PLN02546 glutathione reductase
Probab=70.87 E-value=14 Score=33.78 Aligned_cols=50 Identities=16% Similarity=0.187 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcc
Q psy9486 69 VVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH 141 (165)
Q Consensus 69 ~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~ 141 (165)
+..++.+..++.||+++.+. ++.+ + ... |.+. |.++.+|.+|+|+|+...
T Consensus 180 l~~~~~~~l~~~gV~~i~G~-a~~v--d-~~~---V~v~----------------G~~~~~D~LVIATGs~p~ 229 (558)
T PLN02546 180 LTGIYKNILKNAGVTLIEGR-GKIV--D-PHT---VDVD----------------GKLYTARNILIAVGGRPF 229 (558)
T ss_pred HHHHHHHHHHhCCcEEEEeE-EEEc--c-CCE---EEEC----------------CEEEECCEEEEeCCCCCC
Confidence 34566677788999998763 2322 2 222 3332 357999999999998764
No 304
>KOG1439|consensus
Probab=70.52 E-value=14 Score=32.87 Aligned_cols=56 Identities=18% Similarity=0.244 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCC
Q psy9486 67 GHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH 139 (165)
Q Consensus 67 ~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~ 139 (165)
+++.+-+++-+.=.|..+..+.++.++...++|+++||+.++ ...+++.+| ++...
T Consensus 232 gEL~QgFaRlsAvyGgTYMLn~pi~ei~~~~~gk~igvk~~~----------------~v~~~k~vi-~dpSY 287 (440)
T KOG1439|consen 232 GELPQGFARLSAVYGGTYMLNKPIDEINETKNGKVIGVKSGG----------------EVAKCKKVI-CDPSY 287 (440)
T ss_pred chhhHHHHHHhhccCceeecCCceeeeeccCCccEEEEecCC----------------ceeecceEE-ecCcc
Confidence 378888888888899999999999999985579999998875 467777554 56533
No 305
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=69.24 E-value=20 Score=31.30 Aligned_cols=49 Identities=24% Similarity=0.239 Sum_probs=30.7
Q ss_pred HHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCc
Q psy9486 73 LGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG 140 (165)
Q Consensus 73 L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s 140 (165)
+....++.||+++.++ +.. .+ ... +-|...+ | +..+.+|.+|+|+|+..
T Consensus 98 ~~~~~~~~gv~~~~g~-~~~--~~-~~~-~~v~~~~------~--------~~~~~~d~lViAtGs~p 146 (462)
T PRK06416 98 VEGLLKKNKVDIIRGE-AKL--VD-PNT-VRVMTED------G--------EQTYTAKNIILATGSRP 146 (462)
T ss_pred HHHHHHhCCCEEEEEE-EEE--cc-CCE-EEEecCC------C--------cEEEEeCEEEEeCCCCC
Confidence 4555677899999874 322 22 222 2243221 1 24799999999999875
No 306
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=68.42 E-value=23 Score=34.94 Aligned_cols=75 Identities=17% Similarity=0.102 Sum_probs=42.5
Q ss_pred HHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCC-CcCeEEEcCEEEEcccCCcccchHHHhhcCC
Q psy9486 74 GEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTF-ARGMELHAKVTIFAEGCHGHLTKSLSSRFNL 152 (165)
Q Consensus 74 ~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~-~~g~~i~Ak~VI~A~G~~s~l~~~l~~~~gl 152 (165)
.+.|.+.||++++.+.+.++. ++++......-...+.+|...+.. ....++.||.||.|.|..... .+.+.+|+
T Consensus 712 l~~aleeGVe~~~~~~p~~I~---~g~l~v~~~~l~~~d~sGr~~~v~~Gee~~I~aD~VIvAiG~~Pnt--~lle~~GL 786 (1012)
T TIGR03315 712 LEEALEDGVDFKELLSPESFE---DGTLTCEVMKLGEPDASGRRRPVGTGETVDLPADTVIAAVGEQVDT--DLLQKNGI 786 (1012)
T ss_pred HHHHHHcCCEEEeCCceEEEE---CCeEEEEEEEeecccCCCceeeecCCCeEEEEeCEEEEecCCcCCh--HHHHhcCc
Confidence 456667899999998888875 344433221100011223211000 112369999999999987643 34555666
Q ss_pred C
Q psy9486 153 R 153 (165)
Q Consensus 153 ~ 153 (165)
.
T Consensus 787 ~ 787 (1012)
T TIGR03315 787 P 787 (1012)
T ss_pred c
Confidence 4
No 307
>PLN02568 polyamine oxidase
Probab=68.08 E-value=29 Score=31.58 Aligned_cols=51 Identities=20% Similarity=0.221 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccC
Q psy9486 69 VVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGC 138 (165)
Q Consensus 69 ~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~ 138 (165)
+-+.|++... +-.|+++++|+.|..+ ++.| -|.+.+ |.++.|+.||+|.=.
T Consensus 244 Li~~La~~L~--~~~I~ln~~V~~I~~~-~~~v-~V~~~d---------------G~~~~aD~VIvTvPl 294 (539)
T PLN02568 244 VIEALASVLP--PGTIQLGRKVTRIEWQ-DEPV-KLHFAD---------------GSTMTADHVIVTVSL 294 (539)
T ss_pred HHHHHHhhCC--CCEEEeCCeEEEEEEe-CCeE-EEEEcC---------------CCEEEcCEEEEcCCH
Confidence 4444444332 3479999999999886 3332 355554 357999999998753
No 308
>PRK06370 mercuric reductase; Validated
Probab=67.89 E-value=17 Score=31.94 Aligned_cols=47 Identities=19% Similarity=0.316 Sum_probs=30.5
Q ss_pred HHHHHHHHC-CCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcc
Q psy9486 72 WLGEQAEAM-GVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH 141 (165)
Q Consensus 72 ~L~~~A~~~-Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~ 141 (165)
++.+..++. ||+++.++.+. .+ ... |.+. +.++.+|.+|+|+|+...
T Consensus 99 ~~~~~~~~~~gv~v~~g~~~~---~~-~~~---v~v~----------------~~~~~~d~lViATGs~p~ 146 (463)
T PRK06370 99 GSEQWLRGLEGVDVFRGHARF---ES-PNT---VRVG----------------GETLRAKRIFINTGARAA 146 (463)
T ss_pred hHHHHHhcCCCcEEEEEEEEE---cc-CCE---EEEC----------------cEEEEeCEEEEcCCCCCC
Confidence 344555566 99999887542 22 232 2332 247999999999998764
No 309
>KOG3923|consensus
Probab=67.56 E-value=4.1 Score=34.90 Aligned_cols=27 Identities=19% Similarity=0.281 Sum_probs=23.4
Q ss_pred CcEEEEhHHHHHHHHHHHHHCCCEEec
Q psy9486 60 GNYVVRLGHVVKWLGEQAEAMGVEIYP 86 (165)
Q Consensus 60 ~~~~i~r~~~d~~L~~~A~~~Gv~i~~ 86 (165)
-.|...-.+|..||.++..+.|+++..
T Consensus 144 Tt~~sE~~~ylpyl~k~l~e~Gvef~~ 170 (342)
T KOG3923|consen 144 TTYLSEGPKYLPYLKKRLTENGVEFVQ 170 (342)
T ss_pred EEeeccchhhhHHHHHHHHhcCcEEEE
Confidence 367788889999999999999999963
No 310
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=65.99 E-value=12 Score=33.33 Aligned_cols=61 Identities=20% Similarity=0.201 Sum_probs=40.3
Q ss_pred HHHHHHHH---HCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486 71 KWLGEQAE---AMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL 142 (165)
Q Consensus 71 ~~L~~~A~---~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l 142 (165)
+.|+++-. +..|.++..+.|..+.-..+|+ .-+.+.. .+.|++ .++..|+||+|||.+-.+
T Consensus 279 ~~lY~~~l~~~~~~v~l~~~~ev~~~~~~G~g~-~~l~~~~---~~~~~~-------~t~~~D~vIlATGY~~~~ 342 (436)
T COG3486 279 DLLYEQSLGGRKPDVRLLSLSEVQSVEPAGDGR-YRLTLRH---HETGEL-------ETVETDAVILATGYRRAV 342 (436)
T ss_pred HHHHHHHhcCCCCCeeeccccceeeeecCCCce-EEEEEee---ccCCCc-------eEEEeeEEEEecccccCC
Confidence 34555522 2468999999999998765565 3344432 123433 579999999999988433
No 311
>PF09894 DUF2121: Uncharacterized protein conserved in archaea (DUF2121); InterPro: IPR016754 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. They do show distant similarity to NTPases and to nucleic acid binding enzymes.
Probab=62.99 E-value=21 Score=28.42 Aligned_cols=33 Identities=24% Similarity=0.140 Sum_probs=24.1
Q ss_pred HHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEE
Q psy9486 70 VKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKG 103 (165)
Q Consensus 70 d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~G 103 (165)
|.-|.++|+++||.|...-.-..|..- ++-++|
T Consensus 46 deEL~kkA~Elgv~i~I~D~r~KV~~~-~~vlvG 78 (194)
T PF09894_consen 46 DEELLKKAEELGVKIKITDDREKVRKI-GDVLVG 78 (194)
T ss_pred HHHHHHHHHHcCCEEEEecCchheEEe-CCEEEE
Confidence 788999999999999876655555332 455566
No 312
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=62.43 E-value=13 Score=32.78 Aligned_cols=42 Identities=21% Similarity=0.404 Sum_probs=27.6
Q ss_pred HCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486 79 AMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL 142 (165)
Q Consensus 79 ~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l 142 (165)
+.||+++.++.+.. + ... |.+.+ |.++.+|.+|+|+|+....
T Consensus 104 ~~gv~~~~g~~~~~---~-~~~---V~~~~---------------g~~~~~d~lIiATGs~p~~ 145 (452)
T TIGR03452 104 TPNIDVYDGHARFV---G-PRT---LRTGD---------------GEEITGDQIVIAAGSRPYI 145 (452)
T ss_pred cCCeEEEEEEEEEe---c-CCE---EEECC---------------CcEEEeCEEEEEECCCCCC
Confidence 37999988764322 2 222 33432 3479999999999987643
No 313
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=62.02 E-value=54 Score=29.70 Aligned_cols=77 Identities=18% Similarity=0.108 Sum_probs=46.8
Q ss_pred CcEEEEhHHHHHHHHHHHHH---CCC---EEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEE
Q psy9486 60 GNYVVRLGHVVKWLGEQAEA---MGV---EIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTI 133 (165)
Q Consensus 60 ~~~~i~r~~~d~~L~~~A~~---~Gv---~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI 133 (165)
+-+-..|.-|-.+|.+.... .|- -.+..+.++++..++++...-|.+.+ |....|+.+|
T Consensus 93 ~~~y~pR~lfG~Yl~e~l~~l~~~~~~~~v~~~~~~a~~~~~~~n~~~~~~~~~~---------------g~~~~ad~~V 157 (474)
T COG4529 93 GQAYPPRRLFGEYLREQLAALLARGRQTRVRTIREEATSVRQDTNAGGYLVTTAD---------------GPSEIADIIV 157 (474)
T ss_pred cccccchhHHHHHHHHHHHHHHHhcCccceeEEeeeeecceeccCCceEEEecCC---------------CCeeeeeEEE
Confidence 34456688888887776443 232 22344566666665445433344443 4578999999
Q ss_pred EcccCCcccchHHHhhcC
Q psy9486 134 FAEGCHGHLTKSLSSRFN 151 (165)
Q Consensus 134 ~A~G~~s~l~~~l~~~~g 151 (165)
+|+|..-.....+.+.++
T Consensus 158 latgh~~~~~~~~~~~~~ 175 (474)
T COG4529 158 LATGHSAPPADPAARDLK 175 (474)
T ss_pred EeccCCCCCcchhhhccC
Confidence 999987766555444444
No 314
>PLN02852 ferredoxin-NADP+ reductase
Probab=60.87 E-value=41 Score=30.41 Aligned_cols=71 Identities=18% Similarity=0.192 Sum_probs=45.0
Q ss_pred HHHHHHHHHHH---------CCCEEecCCceeEEEEc--CCCcEEEEEEcccccc---CCCCC--CCCCCcCeEEEcCEE
Q psy9486 69 VVKWLGEQAEA---------MGVEIYPGIPASEVLYH--GDGSVKGIATGDVGIA---KDGSP--KDTFARGMELHAKVT 132 (165)
Q Consensus 69 ~d~~L~~~A~~---------~Gv~i~~~~~v~~i~~~--~~g~V~GV~~~~~g~~---~~g~~--~~~~~~g~~i~Ak~V 132 (165)
..+.|.+.|.+ .++.|.+...-.+|+-+ ++++|.||++..+-+. .+|.. +++ ..-..+.++.|
T Consensus 268 ~~~~l~~~a~~~~~~~~~~~~~v~~~f~~sP~ei~~~~~~~~~v~~l~~~~~~l~~~~~~g~~~~~~t-ge~~~i~~D~V 346 (491)
T PLN02852 268 VYELLSKAAAAGKCAPSGGQRELHFVFFRNPTRFLDSGDGNGHVAGVKLERTVLEGAAGSGKQVAVGT-GEFEDLPCGLV 346 (491)
T ss_pred HHHHHHHHHhhcccccCCCCceEEEEccCCCeEEEccCCCCCcEEEEEEEEeecCCCcccCCcccCCC-CCEEEEECCEE
Confidence 45555555444 47999999988999753 2378999988643221 12321 111 01136999999
Q ss_pred EEcccCCc
Q psy9486 133 IFAEGCHG 140 (165)
Q Consensus 133 I~A~G~~s 140 (165)
|.|-|..+
T Consensus 347 i~aIG~~~ 354 (491)
T PLN02852 347 LKSIGYKS 354 (491)
T ss_pred EEeecCCC
Confidence 99999874
No 315
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=59.28 E-value=43 Score=29.10 Aligned_cols=48 Identities=21% Similarity=0.371 Sum_probs=29.2
Q ss_pred HHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcc
Q psy9486 75 EQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH 141 (165)
Q Consensus 75 ~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~ 141 (165)
+..++.||+++.++. . . .+ .+.+.|...+ + ..++.+|.||+|+|+...
T Consensus 84 ~~~~~~gV~~~~g~~-~-~-~~--~~~v~v~~~~------~--------~~~~~~d~vViATGs~~~ 131 (438)
T PRK07251 84 AMLAGSGVDLYDAEA-H-F-VS--NKVIEVQAGD------E--------KIELTAETIVINTGAVSN 131 (438)
T ss_pred HHHHhCCCEEEEEEE-E-E-cc--CCEEEEeeCC------C--------cEEEEcCEEEEeCCCCCC
Confidence 345668999987753 2 1 22 3323343221 0 136999999999998763
No 316
>PRK07846 mycothione reductase; Reviewed
Probab=57.28 E-value=22 Score=31.32 Aligned_cols=17 Identities=24% Similarity=0.309 Sum_probs=14.6
Q ss_pred eEEEcCEEEEcccCCcc
Q psy9486 125 MELHAKVTIFAEGCHGH 141 (165)
Q Consensus 125 ~~i~Ak~VI~A~G~~s~ 141 (165)
.++++|.+|+|+|+...
T Consensus 125 ~~~~~d~lViATGs~p~ 141 (451)
T PRK07846 125 EEITADQVVIAAGSRPV 141 (451)
T ss_pred CEEEeCEEEEcCCCCCC
Confidence 47999999999998753
No 317
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=56.60 E-value=41 Score=29.69 Aligned_cols=15 Identities=33% Similarity=0.448 Sum_probs=13.6
Q ss_pred EEEcCEEEEcccCCc
Q psy9486 126 ELHAKVTIFAEGCHG 140 (165)
Q Consensus 126 ~i~Ak~VI~A~G~~s 140 (165)
++.+|.+|+|+|+..
T Consensus 134 ~~~~d~lVIATGs~p 148 (466)
T PRK06115 134 QLEAKDIVIATGSEP 148 (466)
T ss_pred EEEeCEEEEeCCCCC
Confidence 699999999999865
No 318
>PLN02529 lysine-specific histone demethylase 1
Probab=55.78 E-value=55 Score=31.24 Aligned_cols=39 Identities=26% Similarity=0.480 Sum_probs=27.9
Q ss_pred CCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEccc
Q psy9486 81 GVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEG 137 (165)
Q Consensus 81 Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G 137 (165)
++.|.++++|+.|.+++++ | -|.+. +..+.||.||+|.=
T Consensus 366 ~L~IrLnt~V~~I~~~~dG-V-tV~t~----------------~~~~~AD~VIVTVP 404 (738)
T PLN02529 366 GVPIFYGKTVDTIKYGNDG-V-EVIAG----------------SQVFQADMVLCTVP 404 (738)
T ss_pred cCCEEcCCceeEEEEcCCe-E-EEEEC----------------CEEEEcCEEEECCC
Confidence 5579999999999986433 2 24332 24799999998754
No 319
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=55.34 E-value=61 Score=28.16 Aligned_cols=43 Identities=16% Similarity=0.348 Sum_probs=26.7
Q ss_pred CCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcc
Q psy9486 80 MGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH 141 (165)
Q Consensus 80 ~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~ 141 (165)
.|++++.+. +..+ + .+. ..|.+.+ | ..++.+|.+|+|+|+...
T Consensus 90 ~gv~~~~g~-~~~i--~-~~~-~~v~~~~------g--------~~~~~~d~lviATGs~p~ 132 (441)
T PRK08010 90 PNIDVIDGQ-AEFI--N-NHS-LRVHRPE------G--------NLEIHGEKIFINTGAQTV 132 (441)
T ss_pred CCcEEEEEE-EEEe--c-CCE-EEEEeCC------C--------eEEEEeCEEEEcCCCcCC
Confidence 499998763 3333 2 233 3354433 1 126999999999998753
No 320
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=55.32 E-value=37 Score=29.50 Aligned_cols=58 Identities=9% Similarity=0.089 Sum_probs=34.3
Q ss_pred HHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCc
Q psy9486 73 LGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG 140 (165)
Q Consensus 73 L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s 140 (165)
+.+.++..|++++. .+|++|-.+ +..| -+.+.+ .+.... ..|.++.+|.+|+|+|+..
T Consensus 68 ~~~~~~~~~~~~i~-~~V~~Id~~-~~~v-~~~~~~----~~~~~~---~~g~~i~yD~LViAtGs~~ 125 (424)
T PTZ00318 68 VRPALAKLPNRYLR-AVVYDVDFE-EKRV-KCGVVS----KSNNAN---VNTFSVPYDKLVVAHGARP 125 (424)
T ss_pred HHHHhccCCeEEEE-EEEEEEEcC-CCEE-EEeccc----cccccc---CCceEecCCEEEECCCccc
Confidence 45566678888875 478888664 3332 222111 000000 0135799999999999875
No 321
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=54.64 E-value=54 Score=32.10 Aligned_cols=64 Identities=22% Similarity=0.282 Sum_probs=35.3
Q ss_pred HHHHHHHHC-CCEEecCCceeEEEEcCCCcEEEEEEccccc--cCCCCCCCCCCcCeEEEcCEEEEcccCCc
Q psy9486 72 WLGEQAEAM-GVEIYPGIPASEVLYHGDGSVKGIATGDVGI--AKDGSPKDTFARGMELHAKVTIFAEGCHG 140 (165)
Q Consensus 72 ~L~~~A~~~-Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~--~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s 140 (165)
-+.+++++. +|+++++++|..+- + ++.+.-+....... ..++... +.-.+++++.||+|+|+..
T Consensus 220 ~~~~~l~~~~~v~v~~~t~V~~i~-~-~~~v~~v~~~~~~~~~~~~~~~~---~~~~~i~a~~VILATGa~~ 286 (985)
T TIGR01372 220 ATVAELTAMPEVTLLPRTTAFGYY-D-HNTVGALERVTDHLDAPPKGVPR---ERLWRIRAKRVVLATGAHE 286 (985)
T ss_pred HHHHHHhcCCCcEEEcCCEEEEEe-c-CCeEEEEEEeeeccccccCCccc---cceEEEEcCEEEEcCCCCC
Confidence 355556555 59999999998873 2 34443332211000 0011110 0012689999999999864
No 322
>KOG1336|consensus
Probab=54.03 E-value=29 Score=31.41 Aligned_cols=42 Identities=21% Similarity=0.352 Sum_probs=33.7
Q ss_pred HHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccC
Q psy9486 78 EAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGC 138 (165)
Q Consensus 78 ~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~ 138 (165)
++.|+++++++.|+.+-.. +.. |.+.+ |..+.-+.+|+|+|.
T Consensus 138 ke~gIe~~~~t~v~~~D~~-~K~---l~~~~---------------Ge~~kys~LilATGs 179 (478)
T KOG1336|consen 138 KEKGIELILGTSVVKADLA-SKT---LVLGN---------------GETLKYSKLIIATGS 179 (478)
T ss_pred hhcCceEEEcceeEEeecc-ccE---EEeCC---------------CceeecceEEEeecC
Confidence 4789999999999999775 343 44443 468999999999998
No 323
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=52.86 E-value=7.9 Score=34.67 Aligned_cols=70 Identities=27% Similarity=0.284 Sum_probs=48.2
Q ss_pred HHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccc--cccCCC--CCCCCCCcC--eEEEcCEEEEcccCCcc
Q psy9486 72 WLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDV--GIAKDG--SPKDTFARG--MELHAKVTIFAEGCHGH 141 (165)
Q Consensus 72 ~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~--g~~~~g--~~~~~~~~g--~~i~Ak~VI~A~G~~s~ 141 (165)
...+.|.+.|+++.+...-.+++.+++|+|.++.+..+ +...+| +..+.-.+| ..+.|+.|+.|.|....
T Consensus 311 ~~~~~a~eeg~~~~~~~~~~~~~~~e~GrV~~~~~~~~~~~~~~~~~~r~~p~~v~gs~~~~~aD~v~~aig~~~~ 386 (457)
T COG0493 311 LEVRSAGEEGVERLPFVQPKAFIGNEGGRVTGVKFGRVEPGEYVDGWGRRGPVGVIGTEKTDAADTVILAIGFEGD 386 (457)
T ss_pred hhhhhhhhcCCcccccCCceeEeecCCCcEeeeecccccccCcccccccccCccccCceEEehHHHHHHHhccCCC
Confidence 46788999999999999999999877899999977653 211111 111111122 35788999999996554
No 324
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=52.83 E-value=53 Score=29.54 Aligned_cols=51 Identities=20% Similarity=0.261 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcc
Q psy9486 69 VVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAE 136 (165)
Q Consensus 69 ~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~ 136 (165)
+|..--.-+++.|-.|..+.+|.+|..+.+| +-|.+.++ .++.||++|+|-
T Consensus 208 md~la~Afa~ql~~~I~~~~~V~rI~q~~~g--V~Vt~~~~---------------~~~~ad~~i~ti 258 (450)
T COG1231 208 MDQLAEAFAKQLGTRILLNEPVRRIDQDGDG--VTVTADDV---------------GQYVADYVLVTI 258 (450)
T ss_pred HHHHHHHHHHHhhceEEecCceeeEEEcCCe--EEEEeCCc---------------ceEEecEEEEec
Confidence 4444333345589999999999999886332 23455431 479999999864
No 325
>KOG1346|consensus
Probab=52.68 E-value=18 Score=32.70 Aligned_cols=94 Identities=14% Similarity=0.173 Sum_probs=62.9
Q ss_pred CCCCcccceeceEEEEc-CCceEEecCCC--C---CCCCCCCcEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCC
Q psy9486 25 GAPLNTPVQEDKFAYLT-KSKRIGIPILP--G---MPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGD 98 (165)
Q Consensus 25 ~~p~~~~v~~~~~~~~~-~~~~l~i~~~~--~---~~~~~~~~~~i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~ 98 (165)
..|-.|++-...+||.. ++..-++.|.+ . .-+-...+|.|+-..++ ++..-||-++.+.+|..|-.+ |
T Consensus 214 elPYmRPPLSKELW~~~dpn~~k~lrfkqwsGkeRsiffepd~FfvspeDLp-----~~~nGGvAvl~G~kvvkid~~-d 287 (659)
T KOG1346|consen 214 ELPYMRPPLSKELWWYGDPNSAKKLRFKQWSGKERSIFFEPDGFFVSPEDLP-----KAVNGGVAVLRGRKVVKIDEE-D 287 (659)
T ss_pred cCcccCCCcchhceecCCCChhhheeecccCCccceeEecCCcceeChhHCc-----ccccCceEEEeccceEEeecc-c
Confidence 45667777777888875 44333333332 1 01122446778766655 456789999999999999654 4
Q ss_pred CcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486 99 GSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL 142 (165)
Q Consensus 99 g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l 142 (165)
. -|..++ |.+|.-+-.++|+|+...-
T Consensus 288 ~---~V~LnD---------------G~~I~YdkcLIATG~~Pk~ 313 (659)
T KOG1346|consen 288 K---KVILND---------------GTTIGYDKCLIATGVRPKK 313 (659)
T ss_pred C---eEEecC---------------CcEeehhheeeecCcCccc
Confidence 4 356665 5789999999999998643
No 326
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=52.57 E-value=51 Score=31.83 Aligned_cols=53 Identities=21% Similarity=0.309 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCC
Q psy9486 67 GHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH 139 (165)
Q Consensus 67 ~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~ 139 (165)
+-+......-|+.++ |++++.|+.|.++.++ |. | +.+ |.++.||.||++.=..
T Consensus 434 GG~~~Li~aLa~~L~--I~ln~~V~~I~~~~dg-V~-V-~~~---------------G~~~~AD~VIvTvPl~ 486 (808)
T PLN02328 434 GGNDTFVRELAKDLP--IFYERTVESIRYGVDG-VI-V-YAG---------------GQEFHGDMVLCTVPLG 486 (808)
T ss_pred CcHHHHHHHHHhhCC--cccCCeeEEEEEcCCe-EE-E-EeC---------------CeEEEcCEEEECCCHH
Confidence 444544444445554 8899999999986433 21 2 222 3579999999887543
No 327
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=50.13 E-value=77 Score=26.73 Aligned_cols=67 Identities=21% Similarity=0.253 Sum_probs=49.2
Q ss_pred HHHHHHHHHHC-CCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcccchHHHh
Q psy9486 70 VKWLGEQAEAM-GVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLTKSLSS 148 (165)
Q Consensus 70 d~~L~~~A~~~-Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l~~~l~~ 148 (165)
..++.+++++. .+++++++.+.++.-+ + |.+|+..+. .|+. .++..+.|..+-|..... .+.+
T Consensus 181 ~~~~~~~l~~~~~i~~~~~~~i~ei~G~--~-v~~v~l~~~----~~~~-------~~~~~~gvf~~iG~~p~~--~~~~ 244 (305)
T COG0492 181 EEILVERLKKNVKIEVLTNTVVKEILGD--D-VEGVVLKNV----KGEE-------KELPVDGVFIAIGHLPNT--ELLK 244 (305)
T ss_pred CHHHHHHHHhcCCeEEEeCCceeEEecC--c-cceEEEEec----CCce-------EEEEeceEEEecCCCCch--HHHh
Confidence 45899999987 8999999999999764 3 778877751 1322 378899999999987654 4444
Q ss_pred hcCC
Q psy9486 149 RFNL 152 (165)
Q Consensus 149 ~~gl 152 (165)
..+.
T Consensus 245 ~~~~ 248 (305)
T COG0492 245 GLGV 248 (305)
T ss_pred hccc
Confidence 4443
No 328
>PTZ00058 glutathione reductase; Provisional
Probab=49.96 E-value=60 Score=29.79 Aligned_cols=18 Identities=22% Similarity=0.255 Sum_probs=15.0
Q ss_pred CeEEEcCEEEEcccCCcc
Q psy9486 124 GMELHAKVTIFAEGCHGH 141 (165)
Q Consensus 124 g~~i~Ak~VI~A~G~~s~ 141 (165)
|.++.++.+|+|+|+...
T Consensus 198 g~~i~ad~lVIATGS~P~ 215 (561)
T PTZ00058 198 GQVIEGKNILIAVGNKPI 215 (561)
T ss_pred CcEEECCEEEEecCCCCC
Confidence 347999999999998753
No 329
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=49.91 E-value=34 Score=32.76 Aligned_cols=47 Identities=19% Similarity=0.265 Sum_probs=36.1
Q ss_pred HHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486 77 AEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL 142 (165)
Q Consensus 77 A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l 142 (165)
+++.|+.++.+.+|..|-.+ .+ -|.+.. |.++.-|-+|+|+|....+
T Consensus 69 y~~~~i~L~~~~~v~~idr~--~k--~V~t~~---------------g~~~~YDkLilATGS~pfi 115 (793)
T COG1251 69 YEENGITLYTGEKVIQIDRA--NK--VVTTDA---------------GRTVSYDKLIIATGSYPFI 115 (793)
T ss_pred HHHcCcEEEcCCeeEEeccC--cc--eEEccC---------------CcEeecceeEEecCccccc
Confidence 57899999999999999663 33 234443 4678889999999987655
No 330
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=48.56 E-value=41 Score=29.41 Aligned_cols=46 Identities=20% Similarity=0.253 Sum_probs=28.4
Q ss_pred HHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcc
Q psy9486 75 EQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH 141 (165)
Q Consensus 75 ~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~ 141 (165)
+.+++.||+++.++.. +. +.+. |.+.+ | ...+.+|.+|+|+|+...
T Consensus 96 ~~l~~~gv~~~~g~~~----~~-~~~~--v~v~~------g--------~~~~~~~~lIiATGs~p~ 141 (463)
T TIGR02053 96 DVLSSYGVDYLRGRAR----FK-DPKT--VKVDL------G--------REVRGAKRFLIATGARPA 141 (463)
T ss_pred HHHHhCCcEEEEEEEE----Ec-cCCE--EEEcC------C--------eEEEEeCEEEEcCCCCCC
Confidence 4466789999877532 22 2332 33322 1 135899999999998753
No 331
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=47.84 E-value=73 Score=28.40 Aligned_cols=49 Identities=12% Similarity=0.026 Sum_probs=29.1
Q ss_pred HHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcc
Q psy9486 75 EQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH 141 (165)
Q Consensus 75 ~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~ 141 (165)
...+..||+++.+.. .+ .+ ... +-|... +|+ ...+.+|.+|+|+|+...
T Consensus 108 ~~~~~~~v~~i~G~a--~f-~~-~~~-v~v~~~------~g~-------~~~~~~d~lVIATGs~p~ 156 (484)
T TIGR01438 108 VALREKKVNYENAYA--EF-VD-KHR-IKATNK------KGK-------EKIYSAERFLIATGERPR 156 (484)
T ss_pred HHHhhCCcEEEEEEE--EE-cC-CCE-EEEecc------CCC-------ceEEEeCEEEEecCCCCC
Confidence 445668999987753 12 22 232 223221 222 136999999999998753
No 332
>PLN03000 amine oxidase
Probab=46.96 E-value=72 Score=31.17 Aligned_cols=51 Identities=14% Similarity=0.183 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEccc
Q psy9486 67 GHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEG 137 (165)
Q Consensus 67 ~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G 137 (165)
+-++..+..-|+.+ .|+++++|+.|.+++ +.| -|.+.+ ..+.||.||+|.=
T Consensus 378 GG~~~LieaLa~~L--~I~Ln~~Vt~I~~~~-dgV-~V~~~~----------------~~~~AD~VIvTVP 428 (881)
T PLN03000 378 GGNGRLVQALAENV--PILYEKTVQTIRYGS-NGV-KVIAGN----------------QVYEGDMVLCTVP 428 (881)
T ss_pred CCHHHHHHHHHhhC--CcccCCcEEEEEECC-CeE-EEEECC----------------cEEEeceEEEcCC
Confidence 33444433334444 489999999999863 322 244332 3799999999874
No 333
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=46.65 E-value=86 Score=28.07 Aligned_cols=18 Identities=22% Similarity=0.314 Sum_probs=15.7
Q ss_pred eEEEcCEEEEcccCCccc
Q psy9486 125 MELHAKVTIFAEGCHGHL 142 (165)
Q Consensus 125 ~~i~Ak~VI~A~G~~s~l 142 (165)
.+++|+.+|+|||++...
T Consensus 132 ~~~~a~~iiIATGS~p~~ 149 (454)
T COG1249 132 ETITADNIIIATGSRPRI 149 (454)
T ss_pred eEEEeCEEEEcCCCCCcC
Confidence 589999999999998744
No 334
>PLN02976 amine oxidase
Probab=45.91 E-value=80 Score=32.97 Aligned_cols=54 Identities=17% Similarity=0.219 Sum_probs=34.9
Q ss_pred hHHHHHHHHHHHHHCCCEEecCCceeEEEEcC---------CCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcc
Q psy9486 66 LGHVVKWLGEQAEAMGVEIYPGIPASEVLYHG---------DGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAE 136 (165)
Q Consensus 66 r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~---------~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~ 136 (165)
++-++..+..-|+.+ .|+++++|+.|.+.. ++. +-|.+.+ |..|.|+.||++-
T Consensus 932 kGGYqqLIeALAe~L--~IrLNtpVtrId~s~~d~~~~~s~~dG-VtVtTsD---------------GetftADaVIVTV 993 (1713)
T PLN02976 932 KGGYSNVVESLAEGL--DIHLNHVVTDVSYGSKDAGASGSSRKK-VKVSTSN---------------GSEFLGDAVLITV 993 (1713)
T ss_pred CCCHHHHHHHHHhhC--CeecCCeEEEEEecCCcccccccCCCc-EEEEECC---------------CCEEEeceEEEeC
Confidence 344555554444444 599999999998841 122 2355544 4579999999875
Q ss_pred c
Q psy9486 137 G 137 (165)
Q Consensus 137 G 137 (165)
=
T Consensus 994 P 994 (1713)
T PLN02976 994 P 994 (1713)
T ss_pred C
Confidence 4
No 335
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=45.55 E-value=24 Score=29.73 Aligned_cols=55 Identities=11% Similarity=-0.094 Sum_probs=31.1
Q ss_pred HHHHHHHHCCCEEecCCceeEEEE--cCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCC
Q psy9486 72 WLGEQAEAMGVEIYPGIPASEVLY--HGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH 139 (165)
Q Consensus 72 ~L~~~A~~~Gv~i~~~~~v~~i~~--~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~ 139 (165)
.+.++..+.|++++.++.+..+.. +.++...-+.+.. . .+..+.+|.||+|+|++
T Consensus 73 ~~~~~l~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~------~-------~~~~~~~d~lviAtGs~ 129 (352)
T PRK12770 73 EGVKELEEAGVVFHTRTKVCCGEPLHEEEGDEFVERIVS------L-------EELVKKYDAVLIATGTW 129 (352)
T ss_pred HHHHHHHhCCeEEecCcEEeeccccccccccccccccCC------H-------HHHHhhCCEEEEEeCCC
Confidence 345667778999999987755421 1111111111111 0 01247899999999984
No 336
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=45.04 E-value=88 Score=27.19 Aligned_cols=16 Identities=38% Similarity=0.364 Sum_probs=13.9
Q ss_pred eEEEcCEEEEcccCCc
Q psy9486 125 MELHAKVTIFAEGCHG 140 (165)
Q Consensus 125 ~~i~Ak~VI~A~G~~s 140 (165)
.++.+|.+|+|+|+..
T Consensus 128 ~~~~~d~lVlAtG~~p 143 (461)
T TIGR01350 128 ETLTAKNIIIATGSRP 143 (461)
T ss_pred EEEEeCEEEEcCCCCC
Confidence 3799999999999765
No 337
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=43.76 E-value=95 Score=27.21 Aligned_cols=16 Identities=25% Similarity=0.233 Sum_probs=14.0
Q ss_pred eEEEcCEEEEcccCCc
Q psy9486 125 MELHAKVTIFAEGCHG 140 (165)
Q Consensus 125 ~~i~Ak~VI~A~G~~s 140 (165)
.++++|.+|+|+|++.
T Consensus 129 ~~~~~d~lviATGs~p 144 (458)
T PRK06912 129 EVVDAEQFIIAAGSEP 144 (458)
T ss_pred EEEECCEEEEeCCCCC
Confidence 3699999999999875
No 338
>PTZ00052 thioredoxin reductase; Provisional
Probab=43.23 E-value=20 Score=32.04 Aligned_cols=17 Identities=24% Similarity=0.272 Sum_probs=14.8
Q ss_pred eEEEcCEEEEcccCCcc
Q psy9486 125 MELHAKVTIFAEGCHGH 141 (165)
Q Consensus 125 ~~i~Ak~VI~A~G~~s~ 141 (165)
..+++|.||+|+|+...
T Consensus 141 ~~i~~d~lIIATGs~p~ 157 (499)
T PTZ00052 141 ETITAKYILIATGGRPS 157 (499)
T ss_pred eEEECCEEEEecCCCCC
Confidence 47999999999998764
No 339
>PRK14727 putative mercuric reductase; Provisional
Probab=42.73 E-value=75 Score=28.12 Aligned_cols=16 Identities=25% Similarity=0.258 Sum_probs=14.0
Q ss_pred EEEcCEEEEcccCCcc
Q psy9486 126 ELHAKVTIFAEGCHGH 141 (165)
Q Consensus 126 ~i~Ak~VI~A~G~~s~ 141 (165)
++.++.+|+|+|+...
T Consensus 148 ~~~~d~lViATGs~p~ 163 (479)
T PRK14727 148 VLAADRCLIATGSTPT 163 (479)
T ss_pred EEEeCEEEEecCCCCC
Confidence 6999999999998753
No 340
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=40.76 E-value=87 Score=27.96 Aligned_cols=26 Identities=27% Similarity=0.314 Sum_probs=19.2
Q ss_pred CCcEEEEhHHHHHHHHHHHHHC-CCEE
Q psy9486 59 HGNYVVRLGHVVKWLGEQAEAM-GVEI 84 (165)
Q Consensus 59 ~~~~~i~r~~~d~~L~~~A~~~-Gv~i 84 (165)
.++++++|..|.++|.++.++. ++.+
T Consensus 89 gg~~~vDR~lF~~~L~~qLe~~pnItv 115 (433)
T TIGR00137 89 GGALAVDRGIFSRSLTEQVASHPNVTL 115 (433)
T ss_pred CceEEehHHHHHHHHHHHHHhCCCcEE
Confidence 4467889999999998888763 3443
No 341
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=40.32 E-value=58 Score=32.32 Aligned_cols=43 Identities=16% Similarity=0.067 Sum_probs=29.6
Q ss_pred HHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCc
Q psy9486 71 KWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG 140 (165)
Q Consensus 71 ~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s 140 (165)
.+..+.+++.||+|.+++.+ ++..+ +. .....+.||+|+|++.
T Consensus 593 ~~die~l~~~GVe~~~gt~V-di~le-~L-------------------------~~~gYDaVILATGA~~ 635 (1019)
T PRK09853 593 QHDIEFVKAHGVKFEFGCSP-DLTVE-QL-------------------------KNEGYDYVVVAIGADK 635 (1019)
T ss_pred HHHHHHHHHcCCEEEeCcee-EEEhh-hh-------------------------eeccCCEEEECcCCCC
Confidence 34567788899999999876 33322 10 1344699999999874
No 342
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=39.99 E-value=27 Score=30.69 Aligned_cols=46 Identities=17% Similarity=0.216 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCC
Q psy9486 68 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH 139 (165)
Q Consensus 68 ~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~ 139 (165)
.+-.++.+.+++.|+++++++.+... +.+.+ ..+.+|.||+|+|++
T Consensus 191 ~~~~~~~~~l~~~gv~~~~~~~v~~~----------v~~~~----------------~~~~~d~vvlAtGa~ 236 (457)
T PRK11749 191 DIVDREVERLLKLGVEIRTNTEVGRD----------ITLDE----------------LRAGYDAVFIGTGAG 236 (457)
T ss_pred HHHHHHHHHHHHcCCEEEeCCEECCc----------cCHHH----------------HHhhCCEEEEccCCC
Confidence 55566778888899999988765211 11111 136789999999986
No 343
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=39.00 E-value=1.3e+02 Score=27.39 Aligned_cols=60 Identities=13% Similarity=0.062 Sum_probs=37.1
Q ss_pred HHHHHHHHH-CCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEE--EcCE----EEEcccCCccc
Q psy9486 71 KWLGEQAEA-MGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMEL--HAKV----TIFAEGCHGHL 142 (165)
Q Consensus 71 ~~L~~~A~~-~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i--~Ak~----VI~A~G~~s~l 142 (165)
..+.+++.+ .||+|++++.|+++.- ++.+.++...+. .+|+. .++ .+|. ||+|.|.....
T Consensus 182 ~~~~~~~~~~~gV~i~~~~~V~~i~~--~~~v~~v~~~~~---~~G~~-------~~~~~~~D~~~~~Vi~a~G~~Pn~ 248 (555)
T TIGR03143 182 KLIAEKVKNHPKIEVKFNTELKEATG--DDGLRYAKFVNN---VTGEI-------TEYKAPKDAGTFGVFVFVGYAPSS 248 (555)
T ss_pred HHHHHHHHhCCCcEEEeCCEEEEEEc--CCcEEEEEEEEC---CCCCE-------EEEeccccccceEEEEEeCCCCCh
Confidence 334455544 5999999999999863 355555543321 13321 123 3665 99999988755
No 344
>PRK14694 putative mercuric reductase; Provisional
Probab=38.95 E-value=1e+02 Score=27.09 Aligned_cols=44 Identities=16% Similarity=0.290 Sum_probs=27.4
Q ss_pred CCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcc
Q psy9486 80 MGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH 141 (165)
Q Consensus 80 ~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~ 141 (165)
.|++++.+ .|..+ + ... .-|.+.+ |. ..++++|.+|+|+|+...
T Consensus 110 ~~v~~~~g-~v~~i--d-~~~-~~V~~~~------g~-------~~~~~~d~lViATGs~p~ 153 (468)
T PRK14694 110 AAITVLNG-EARFV--D-ERT-LTVTLND------GG-------EQTVHFDRAFIGTGARPA 153 (468)
T ss_pred CCeEEEEE-EEEEe--c-CCE-EEEEecC------CC-------eEEEECCEEEEeCCCCCC
Confidence 38888876 35555 2 222 2344443 21 136999999999998753
No 345
>PRK13748 putative mercuric reductase; Provisional
Probab=36.49 E-value=1.2e+02 Score=27.27 Aligned_cols=16 Identities=13% Similarity=0.115 Sum_probs=14.1
Q ss_pred EEEcCEEEEcccCCcc
Q psy9486 126 ELHAKVTIFAEGCHGH 141 (165)
Q Consensus 126 ~i~Ak~VI~A~G~~s~ 141 (165)
++.+|.+|+|+|+...
T Consensus 230 ~~~~d~lviAtGs~p~ 245 (561)
T PRK13748 230 VVAFDRCLIATGASPA 245 (561)
T ss_pred EEEcCEEEEcCCCCCC
Confidence 6999999999998754
No 346
>PRK12831 putative oxidoreductase; Provisional
Probab=35.93 E-value=23 Score=31.40 Aligned_cols=47 Identities=19% Similarity=0.179 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCC
Q psy9486 69 VVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH 139 (165)
Q Consensus 69 ~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~ 139 (165)
+-.+..+.+++.|++|++++.+.. . |...+ . ..++.++.||+|+|++
T Consensus 193 ~~~~~~~~~~~~gv~i~~~~~v~~-------~---v~~~~------~--------~~~~~~d~viiAtGa~ 239 (464)
T PRK12831 193 VVKKEIENIKKLGVKIETNVVVGK-------T---VTIDE------L--------LEEEGFDAVFIGSGAG 239 (464)
T ss_pred HHHHHHHHHHHcCCEEEcCCEECC-------c---CCHHH------H--------HhccCCCEEEEeCCCC
Confidence 445556788889999999885521 0 11111 0 0135689999999984
No 347
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=33.02 E-value=44 Score=29.59 Aligned_cols=45 Identities=18% Similarity=0.127 Sum_probs=30.2
Q ss_pred HHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcc
Q psy9486 71 KWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH 141 (165)
Q Consensus 71 ~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~ 141 (165)
.+..+.++++|++++.++.|..- +...+ ....+|.||+|+|++..
T Consensus 195 ~~~~~~~~~~Gv~~~~~~~v~~~----------~~~~~----------------~~~~~D~vilAtGa~~~ 239 (467)
T TIGR01318 195 SRRREIFTAMGIEFHLNCEVGRD----------ISLDD----------------LLEDYDAVFLGVGTYRS 239 (467)
T ss_pred HHHHHHHHHCCCEEECCCEeCCc----------cCHHH----------------HHhcCCEEEEEeCCCCC
Confidence 45567888999999998866321 11111 12457999999999864
No 348
>KOG0685|consensus
Probab=32.31 E-value=44 Score=30.35 Aligned_cols=59 Identities=19% Similarity=0.219 Sum_probs=36.1
Q ss_pred cEEEEhHHHHHHHHHHHH-------HCC--CEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCE
Q psy9486 61 NYVVRLGHVVKWLGEQAE-------AMG--VEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKV 131 (165)
Q Consensus 61 ~~~i~r~~~d~~L~~~A~-------~~G--v~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~ 131 (165)
.....-.-+.+.|---+. ++| -.+..+++|.+|.++++++|. |++.+ |..+.||.
T Consensus 214 ~~~~~~kGy~~iL~~l~~~~p~~~i~~~~~~~~~~~~rv~~I~~~~~~~v~-l~c~d---------------g~v~~adh 277 (498)
T KOG0685|consen 214 LLIWNKKGYKRILKLLMAVIPAQNIELGLWKRIHLNTRVENINWKNTGEVK-LRCSD---------------GEVFHADH 277 (498)
T ss_pred hheechhHHHHHHHHHhccCCCcchhcCchhhhcccccceeeccCCCCcEE-EEEeC---------------CcEEeccE
Confidence 344444455555444443 233 223334889999887557754 67765 56899999
Q ss_pred EEEc
Q psy9486 132 TIFA 135 (165)
Q Consensus 132 VI~A 135 (165)
||+.
T Consensus 278 VIvT 281 (498)
T KOG0685|consen 278 VIVT 281 (498)
T ss_pred EEEE
Confidence 9963
No 349
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=29.34 E-value=2e+02 Score=25.67 Aligned_cols=17 Identities=24% Similarity=0.339 Sum_probs=14.5
Q ss_pred eEEEcCEEEEcccCCcc
Q psy9486 125 MELHAKVTIFAEGCHGH 141 (165)
Q Consensus 125 ~~i~Ak~VI~A~G~~s~ 141 (165)
..+.+|.+|+|+|+...
T Consensus 148 ~~~~~d~lIIATGs~p~ 164 (486)
T TIGR01423 148 ERLQAEHILLATGSWPQ 164 (486)
T ss_pred eEEECCEEEEecCCCCC
Confidence 37999999999998753
No 350
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=28.85 E-value=71 Score=31.31 Aligned_cols=46 Identities=9% Similarity=0.018 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCC
Q psy9486 69 VVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH 139 (165)
Q Consensus 69 ~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~ 139 (165)
+-++..+..+++||+|.+++.+-. -+.+.+ ......|.||+|+|++
T Consensus 358 vi~~~i~~l~~~Gv~f~~n~~vG~----------dit~~~---------------l~~~~yDAV~LAtGA~ 403 (944)
T PRK12779 358 LIDDVVEKIKLLGGRFVKNFVVGK----------TATLED---------------LKAAGFWKIFVGTGAG 403 (944)
T ss_pred HHHHHHHHHHhhcCeEEEeEEecc----------EEeHHH---------------hccccCCEEEEeCCCC
Confidence 334556788889999998764311 122222 1234579999999986
No 351
>KOG1335|consensus
Probab=28.79 E-value=1.3e+02 Score=27.12 Aligned_cols=13 Identities=38% Similarity=0.450 Sum_probs=9.2
Q ss_pred EEEcCEEEEcccC
Q psy9486 126 ELHAKVTIFAEGC 138 (165)
Q Consensus 126 ~i~Ak~VI~A~G~ 138 (165)
.|.||.+|+|+|.
T Consensus 171 ii~aKnIiiATGS 183 (506)
T KOG1335|consen 171 IIKAKNIIIATGS 183 (506)
T ss_pred EEeeeeEEEEeCC
Confidence 6777777777773
No 352
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=28.06 E-value=2.2e+02 Score=26.81 Aligned_cols=18 Identities=28% Similarity=0.397 Sum_probs=15.3
Q ss_pred eEEEcCEEEEcccCCccc
Q psy9486 125 MELHAKVTIFAEGCHGHL 142 (165)
Q Consensus 125 ~~i~Ak~VI~A~G~~s~l 142 (165)
.++.+|.+|+|+|+...+
T Consensus 271 ~~i~ad~lIIATGS~P~~ 288 (659)
T PTZ00153 271 KEFKVKNIIIATGSTPNI 288 (659)
T ss_pred EEEECCEEEEcCCCCCCC
Confidence 579999999999987643
No 353
>KOG1238|consensus
Probab=27.03 E-value=1.4e+02 Score=28.06 Aligned_cols=49 Identities=22% Similarity=0.299 Sum_probs=33.5
Q ss_pred CCEEecCCceeEEEEcCC-CcEEEEEEccccccCCCCCCCCCCcCeEEEc-CEEEEcccCCc
Q psy9486 81 GVEIYPGIPASEVLYHGD-GSVKGIATGDVGIAKDGSPKDTFARGMELHA-KVTIFAEGCHG 140 (165)
Q Consensus 81 Gv~i~~~~~v~~i~~~~~-g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~A-k~VI~A~G~~s 140 (165)
...+...+.|+.|.+|.. .+..||+....| |.. ..++| |=||++.|+-.
T Consensus 268 NL~~~~~~~vtrvl~D~~~~~a~gv~~~~~~----~~~-------~~v~a~kEVILSAGAi~ 318 (623)
T KOG1238|consen 268 NLHISRNAAVTRVLIDPAGKRAKGVEFVRDG----GKE-------HTVKARKEVILSAGAIN 318 (623)
T ss_pred cccccccceEEEEEEcCCCceEEEEEEEecC----cee-------eeecccceEEEeccccC
Confidence 566778889999999744 478888887521 211 23444 33999999765
No 354
>KOG2665|consensus
Probab=26.82 E-value=3.1e+02 Score=24.21 Aligned_cols=74 Identities=20% Similarity=0.293 Sum_probs=52.7
Q ss_pred EEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEE--EEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCc
Q psy9486 63 VVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKG--IATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG 140 (165)
Q Consensus 63 ~i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~G--V~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s 140 (165)
+++=..+..-+.+.-+.+|-.++++.++..+....++. .+ +... +| ++.+++.+.||-++|-.|
T Consensus 192 IvD~~~v~ls~~edF~~~gg~i~~n~~l~g~~~n~~~~-~~Ypivv~------ng-------k~ee~r~~~~vtc~gl~s 257 (453)
T KOG2665|consen 192 IVDWGSVTLSFGEDFDFMGGRIYTNFRLQGIAQNKEAT-FSYPIVVL------NG-------KGEEKRTKNVVTCAGLQS 257 (453)
T ss_pred eeehHHHHHHHHHHHHHhcccccccceeccchhccCCC-CCCceEEe------cC-------ccceeEEeEEEEeccccH
Confidence 77878888888999999999999999999997643321 11 1121 12 147899999999999887
Q ss_pred ccchHHHhhcCCC
Q psy9486 141 HLTKSLSSRFNLR 153 (165)
Q Consensus 141 ~l~~~l~~~~gl~ 153 (165)
..+.+..|..
T Consensus 258 ---dr~aa~sgc~ 267 (453)
T KOG2665|consen 258 ---DRCAALSGCE 267 (453)
T ss_pred ---hHHHHHhCCC
Confidence 3444445654
No 355
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=26.64 E-value=1.9e+02 Score=25.16 Aligned_cols=15 Identities=27% Similarity=0.403 Sum_probs=13.7
Q ss_pred eEEEcCEEEEcccCC
Q psy9486 125 MELHAKVTIFAEGCH 139 (165)
Q Consensus 125 ~~i~Ak~VI~A~G~~ 139 (165)
.++.++.+|+|+|..
T Consensus 127 ~~~~~d~lIiATGs~ 141 (460)
T PRK06292 127 ERIEAKNIVIATGSR 141 (460)
T ss_pred EEEEeCEEEEeCCCC
Confidence 579999999999987
No 356
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=26.05 E-value=59 Score=28.98 Aligned_cols=45 Identities=13% Similarity=0.185 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCC
Q psy9486 69 VVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH 139 (165)
Q Consensus 69 ~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~ 139 (165)
+.....+.+++.||++++++.|..- . . .+ .....++.||+|+|++
T Consensus 195 ~~~~~~~~~~~~Gv~~~~~~~v~~~-~---------~-~~---------------~~~~~~d~VilAtGa~ 239 (485)
T TIGR01317 195 IVDRRIDLLSAEGIDFVTNTEIGVD-I---------S-AD---------------ELKEQFDAVVLAGGAT 239 (485)
T ss_pred HHHHHHHHHHhCCCEEECCCEeCCc-c---------C-HH---------------HHHhhCCEEEEccCCC
Confidence 3344467788899999998876411 0 0 01 0134579999999987
No 357
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=25.70 E-value=53 Score=30.98 Aligned_cols=46 Identities=20% Similarity=0.155 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCC
Q psy9486 69 VVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH 139 (165)
Q Consensus 69 ~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~ 139 (165)
+-.+..+.++++||+|++++.+. .. |.+.+ .....+|.||+|+|++
T Consensus 483 ~~~~~~~~l~~~gv~~~~~~~v~-------~~---v~~~~---------------l~~~~ydavvlAtGa~ 528 (752)
T PRK12778 483 IVDVEIENLKKLGVKFETDVIVG-------KT---ITIEE---------------LEEEGFKGIFIASGAG 528 (752)
T ss_pred HHHHHHHHHHHCCCEEECCCEEC-------Cc---CCHHH---------------HhhcCCCEEEEeCCCC
Confidence 44455677888999999886441 11 12221 1235689999999985
No 358
>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=25.35 E-value=92 Score=19.73 Aligned_cols=19 Identities=26% Similarity=0.475 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHCCCEEe
Q psy9486 67 GHVVKWLGEQAEAMGVEIY 85 (165)
Q Consensus 67 ~~~d~~L~~~A~~~Gv~i~ 85 (165)
+.|-++|..+|++.|+.+.
T Consensus 2 ~~~~~~L~yka~~~G~~v~ 20 (69)
T PF07282_consen 2 GQFRQRLEYKAEEYGIQVV 20 (69)
T ss_pred HHHHHHHHHHHHHhCCEEE
Confidence 4678899999999998885
No 359
>KOG0405|consensus
Probab=25.18 E-value=2.5e+02 Score=25.06 Aligned_cols=59 Identities=15% Similarity=0.235 Sum_probs=40.1
Q ss_pred HHHHHHHH----HHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486 68 HVVKWLGE----QAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL 142 (165)
Q Consensus 68 ~~d~~L~~----~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l 142 (165)
.||..+.. .-+..|++++..+.+++++...+|-.. +.+.. |.....+.++-|.|.....
T Consensus 227 ~FD~~i~~~v~~~~~~~ginvh~~s~~~~v~K~~~g~~~-~i~~~---------------~~i~~vd~llwAiGR~Pnt 289 (478)
T KOG0405|consen 227 GFDEMISDLVTEHLEGRGINVHKNSSVTKVIKTDDGLEL-VITSH---------------GTIEDVDTLLWAIGRKPNT 289 (478)
T ss_pred chhHHHHHHHHHHhhhcceeecccccceeeeecCCCceE-EEEec---------------cccccccEEEEEecCCCCc
Confidence 56766544 445679999999999999875455322 33332 2334589999999976543
No 360
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=25.01 E-value=3.5e+02 Score=23.68 Aligned_cols=17 Identities=18% Similarity=0.184 Sum_probs=14.5
Q ss_pred eEEEcCEEEEcccCCcc
Q psy9486 125 MELHAKVTIFAEGCHGH 141 (165)
Q Consensus 125 ~~i~Ak~VI~A~G~~s~ 141 (165)
.++.+|.+|+|+|+...
T Consensus 132 ~~~~~d~lViATGs~p~ 148 (466)
T PRK07818 132 ETVTFDNAIIATGSSTR 148 (466)
T ss_pred eEEEcCEEEEeCCCCCC
Confidence 36999999999998763
No 361
>COG4079 Uncharacterized protein conserved in archaea [Function unknown]
Probab=24.71 E-value=1.1e+02 Score=25.51 Aligned_cols=23 Identities=26% Similarity=0.306 Sum_probs=17.7
Q ss_pred CcEEEEhHHHHHHHHHHHHHCCCEEec
Q psy9486 60 GNYVVRLGHVVKWLGEQAEAMGVEIYP 86 (165)
Q Consensus 60 ~~~~i~r~~~d~~L~~~A~~~Gv~i~~ 86 (165)
.|-+.+ +.-|++.|+++||+|..
T Consensus 40 sGeIkt----eEEL~r~aeel~Vki~v 62 (293)
T COG4079 40 SGEIKT----EEELARKAEELGVKITV 62 (293)
T ss_pred cCcccc----HHHHHHHHHHcCCEEEE
Confidence 344554 78899999999999753
No 362
>KOG0399|consensus
Probab=24.36 E-value=2.1e+02 Score=29.67 Aligned_cols=76 Identities=25% Similarity=0.271 Sum_probs=43.4
Q ss_pred HHCCCEEecCCce-eEEEEcCCCcEEEEEEccccccCC--CCC----CCCCCcCeEEEcCEEEEcccCCcccchHHHhhc
Q psy9486 78 EAMGVEIYPGIPA-SEVLYHGDGSVKGIATGDVGIAKD--GSP----KDTFARGMELHAKVTIFAEGCHGHLTKSLSSRF 150 (165)
Q Consensus 78 ~~~Gv~i~~~~~v-~~i~~~~~g~V~GV~~~~~g~~~~--g~~----~~~~~~g~~i~Ak~VI~A~G~~s~l~~~l~~~~ 150 (165)
+..|-+.++..-. ++.+-+++|.|+|+++.+.--.|+ |.- ..+ -...|.||.||+|-|--+.= +.+.+++
T Consensus 1988 ~~~g~dpr~y~vltk~f~~~~~g~v~gl~~vrvew~k~~~g~w~~~ei~~--see~~eadlv~lamgf~gpe-~~~~~~~ 2064 (2142)
T KOG0399|consen 1988 EHYGSDPRTYSVLTKRFIGDDNGNVTGLETVRVEWEKDDKGRWQMKEINN--SEEIIEADLVILAMGFVGPE-KSVIEQL 2064 (2142)
T ss_pred HHhCCCcceeeeeeeeeeccCCCceeeEEEEEEEEEecCCCceEEEEcCC--cceeeecceeeeeccccCcc-hhhhhhc
Confidence 3467776655433 345556678888876543221111 110 000 01368999999999877654 5666667
Q ss_pred CCCCCC
Q psy9486 151 NLRGQC 156 (165)
Q Consensus 151 gl~~~~ 156 (165)
++..+.
T Consensus 2065 ~~~~d~ 2070 (2142)
T KOG0399|consen 2065 NLKTDP 2070 (2142)
T ss_pred CcccCc
Confidence 776543
No 363
>PF07156 Prenylcys_lyase: Prenylcysteine lyase; InterPro: IPR010795 This entry represents a conserved region found in a group of prenylcysteine lyases (1.8.3.5 from EC) that are approximately 500 residues long. Prenylcysteine lyase is a FAD-dependent thioether oxidase that degrades a variety of prenylcysteines, producing free cysteine, an isoprenoid aldehyde and hydrogen peroxide as products of the reaction []. It has been noted that this enzyme has considerable homology with ClP55, a 55 kDa protein that is associated with chloride ion pumps [].; GO: 0016670 oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor, 0030328 prenylcysteine catabolic process, 0055114 oxidation-reduction process
Probab=24.23 E-value=2.6e+02 Score=24.27 Aligned_cols=67 Identities=15% Similarity=0.205 Sum_probs=36.2
Q ss_pred CCcEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEE-EcCCCc-EEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcc
Q psy9486 59 HGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVL-YHGDGS-VKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAE 136 (165)
Q Consensus 59 ~~~~~i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~-~~~~g~-V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~ 136 (165)
.+.|.|..+. -+...+-.+..|+.+ .+++|++|. ...++. ..-|.... ..+. ..-.-|.||+|+
T Consensus 118 ~gl~sV~GGN-~qI~~~ll~~S~A~v-l~~~Vt~I~~~~~~~~~~y~v~~~~----~~~~--------~~~~yD~VVIAt 183 (368)
T PF07156_consen 118 GGLWSVEGGN-WQIFEGLLEASGANV-LNTTVTSITRRSSDGYSLYEVTYKS----SSGT--------ESDEYDIVVIAT 183 (368)
T ss_pred CCceEecCCH-HHHHHHHHHHccCcE-ecceeEEEEeccCCCceeEEEEEec----CCCC--------ccccCCEEEECC
Confidence 4457776654 122233344689999 789999993 332333 22333332 1111 112239999998
Q ss_pred cCC
Q psy9486 137 GCH 139 (165)
Q Consensus 137 G~~ 139 (165)
=-.
T Consensus 184 Pl~ 186 (368)
T PF07156_consen 184 PLQ 186 (368)
T ss_pred Ccc
Confidence 653
No 364
>KOG0029|consensus
Probab=22.45 E-value=1.7e+02 Score=26.58 Aligned_cols=40 Identities=18% Similarity=0.312 Sum_probs=28.8
Q ss_pred CCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcc
Q psy9486 81 GVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAE 136 (165)
Q Consensus 81 Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~ 136 (165)
|..|+.+..|.+|.+..++. +.|.+.+ +..+.|+.||++.
T Consensus 228 ~l~I~~~~~v~~i~~~~~~~-~~~~~~~---------------~~~~~~d~vvvt~ 267 (501)
T KOG0029|consen 228 GLDIHLNKRVRKIKYGDDGA-VKVTVET---------------GDGYEADAVVVTV 267 (501)
T ss_pred CcceeeceeeEEEEEecCCc-eEEEEEC---------------CCeeEeeEEEEEc
Confidence 89999999999999975665 2333332 2348888888764
No 365
>PF07338 DUF1471: Protein of unknown function (DUF1471); InterPro: IPR010854 This entry consists of several hypothetical Enterobacterial proteins of around 90 residues in length. Some of the proteins are annotated as ydgH precursors and contain two copies of this region, one at the N terminus and the other at the C terminus. The function of this family is unknown.; PDB: 2NOC_A 2JNA_B 4EVU_B.
Probab=22.26 E-value=93 Score=19.46 Aligned_cols=23 Identities=17% Similarity=0.226 Sum_probs=18.3
Q ss_pred EEhHHHHHHHHHHHHHCCCEEec
Q psy9486 64 VRLGHVVKWLGEQAEAMGVEIYP 86 (165)
Q Consensus 64 i~r~~~d~~L~~~A~~~Gv~i~~ 86 (165)
-+..++.+.|.++|.+.|+..|.
T Consensus 15 ~s~~d~~~~la~kAd~~GA~~y~ 37 (56)
T PF07338_consen 15 GSPDDAEEALAKKADEKGAKYYR 37 (56)
T ss_dssp SSHHHHHHHHHHHHHHTT-SEEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEE
Confidence 35667889999999999999873
No 366
>PF01906 YbjQ_1: Putative heavy-metal-binding; InterPro: IPR002765 This family of bacterial proteins have not been characterised.; PDB: 3QKB_A 1VR4_D 1Y2I_D 2GTC_C.
Probab=21.88 E-value=2.9e+02 Score=19.28 Aligned_cols=30 Identities=17% Similarity=0.192 Sum_probs=20.2
Q ss_pred hHHHHHHHHHHHHHCCCEEecCCceeEEEE
Q psy9486 66 LGHVVKWLGEQAEAMGVEIYPGIPASEVLY 95 (165)
Q Consensus 66 r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~ 95 (165)
|...-+-|.++|+++|++-..+.+..--.+
T Consensus 58 r~~A~~~L~~~A~~~GAnAVIgv~~~~~~~ 87 (105)
T PF01906_consen 58 REEALERLKEEAKELGANAVIGVRFDYSSI 87 (105)
T ss_dssp HHHHHHHHHHHHHHTT-SEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHhhCCCCEEEEEEEEeeee
Confidence 555666789999999987766655544444
No 367
>cd08344 MhqB_like_N N-terminal domain of MhqB, a type I extradiol dioxygenase, and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=20.59 E-value=2.7e+02 Score=18.57 Aligned_cols=77 Identities=12% Similarity=0.094 Sum_probs=38.7
Q ss_pred eecccchhhhccccccCCCCCcccceeceEEEEcCC-c-eEEecCCCCCCCCCCCcEEEEhHHHHHHHHHHHHHCCCEEe
Q psy9486 8 VIDPIALNELLPDWKDLGAPLNTPVQEDKFAYLTKS-K-RIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIY 85 (165)
Q Consensus 8 ~l~~~~l~el~P~~~~~~~p~~~~v~~~~~~~~~~~-~-~l~i~~~~~~~~~~~~~~~i~r~~~d~~L~~~A~~~Gv~i~ 85 (165)
.|+...+++..-.+..+|+.+.. ..+..++.+.. . .+-.-...........++.+....++.+ .++++++|+++.
T Consensus 7 ~l~v~d~~~s~~FY~~lG~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~l~~~Gi~~~ 83 (112)
T cd08344 7 ALEVPDLEVARRFYEAFGLDVRE--EGDGLELRTAGNDHRWARLLEGARKRLAYLSFGIFEDDFAAF-ARHLEAAGVALA 83 (112)
T ss_pred EEecCCHHHHHHHHHHhCCcEEe--ecCceEEEecCCCceEEEeecCCCCceeeEEEEeEhhhHHHH-HHHHHHcCCcee
Confidence 45555566666555544554322 22344444322 2 2111111110111123466777888876 788889999986
Q ss_pred cC
Q psy9486 86 PG 87 (165)
Q Consensus 86 ~~ 87 (165)
.+
T Consensus 84 ~~ 85 (112)
T cd08344 84 AA 85 (112)
T ss_pred cC
Confidence 43
No 368
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=20.25 E-value=79 Score=31.19 Aligned_cols=23 Identities=13% Similarity=0.147 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHCCCEEecCCce
Q psy9486 68 HVVKWLGEQAEAMGVEIYPGIPA 90 (165)
Q Consensus 68 ~~d~~L~~~A~~~Gv~i~~~~~v 90 (165)
++-....+..+++||+|++++.+
T Consensus 481 e~~~~~~~~l~~~Gv~~~~~~~v 503 (1006)
T PRK12775 481 DIIDREVQRLVDIGVKIETNKVI 503 (1006)
T ss_pred HHHHHHHHHHHHCCCEEEeCCcc
Confidence 45556778888999999988643
Done!