RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy9486
         (165 letters)



>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG
           FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8
           d.58.1.6 PDB: 2gmj_A*
          Length = 584

 Score =  264 bits (676), Expect = 7e-87
 Identities = 111/158 (70%), Positives = 128/158 (81%)

Query: 1   GHILSGAVIDPIALNELLPDWKDLGAPLNTPVQEDKFAYLTKSKRIGIPILPGMPMNNHG 60
            H LSGA +DP A  EL PDWK+ GAPLNTPV ED+F  LT+  RI +PILPG+PMNNHG
Sbjct: 78  AHTLSGACLDPRAFEELFPDWKEKGAPLNTPVTEDRFGILTEKYRIPVPILPGLPMNNHG 137

Query: 61  NYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDT 120
           NYVVRLGH+V W+GEQAEA+GVE+YPG  A+E+L+H DGSVKGIAT DVGI KDG+PK T
Sbjct: 138 NYVVRLGHLVSWMGEQAEALGVEVYPGYAAAEILFHEDGSVKGIATNDVGIQKDGAPKTT 197

Query: 121 FARGMELHAKVTIFAEGCHGHLTKSLSSRFNLRGQCMS 158
           F RG+ELHAKVTIFAEGCHGHL K L  +F+LR  C  
Sbjct: 198 FERGLELHAKVTIFAEGCHGHLAKQLYKKFDLRANCEP 235


>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein;
           HET: AHZ; 2.70A {Neurospora crassa}
          Length = 344

 Score = 84.4 bits (208), Expect = 3e-20
 Identities = 18/157 (11%), Positives = 38/157 (24%), Gaps = 10/157 (6%)

Query: 1   GHILSGAVIDP--IALNELLPDWKDLGAPLNTPVQEDKFAYLTKSKRIGIPILPGMPMNN 58
           G    G  +    +          ++G P      E  +  +  +      +L  + +  
Sbjct: 118 GGAWLGGQLFSAMVMRKPADVFLDEVGVPYED---EGDYVVVKHAALFTSTVLSKV-LQR 173

Query: 59  HGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPK 118
               +     V   +  +  A            E        + G+ T    ++     +
Sbjct: 174 PNVKLFNATTVEDLITRKHHAESSSSSDD---GEAEDEAKVRIAGVVTNWTLVSMHHDDQ 230

Query: 119 DTFARGMELHAKVTIFAEGCHGHLTKSLSSRFNLRGQ 155
                   ++A V I   G  G        R     Q
Sbjct: 231 SAM-DPNTINAPVIISTTGHDGPFGAFSVKRLVSMKQ 266


>3atr_A Conserved archaeal protein; saturating double bonds, archaeal
           membrane precursor, like 2 geranylgeranylglyceryl
           phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius}
           PDB: 3atq_A*
          Length = 453

 Score = 47.5 bits (113), Expect = 4e-07
 Identities = 22/145 (15%), Positives = 48/145 (33%), Gaps = 21/145 (14%)

Query: 9   IDPIALNELLPDWKDLGAPLNTPVQEDKFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGH 68
           +     ++L   +   G  L   +   K  Y    + +      G        + +    
Sbjct: 52  VSKAHFDKLGMPYPK-GEELENKINGIKL-YSPDMQTVWTVNGEG--------FELNAPL 101

Query: 69  VVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELH 128
             + + ++A+  GVEI+    A + ++  DG VKG    +    ++            ++
Sbjct: 102 YNQRVLKEAQDRGVEIWDLTTAMKPIFE-DGYVKGAVLFNRRTNEEL----------TVY 150

Query: 129 AKVTIFAEGCHGHLTKSLSSRFNLR 153
           +KV + A G        L     + 
Sbjct: 151 SKVVVEATGYSRSFRSKLPPELPIT 175


>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase
           type II family, thiazole synthase, mitochondria DNA
           repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} SCOP:
           c.3.1.6 PDB: 3fpz_A*
          Length = 326

 Score = 38.6 bits (89), Expect = 4e-04
 Identities = 18/119 (15%), Positives = 39/119 (32%), Gaps = 22/119 (18%)

Query: 53  GMPMNNHGNYVVRL---GHVVKWLGEQAEAMGVEIYPGIPASEVLYH-----GDGSVKGI 104
            +P  + G+YVV       +   L +  +   V+++      +++       G+ +V G+
Sbjct: 130 EIPYEDEGDYVVVKHAALFISTVLSKVLQLPNVKLFNATCVEDLVTRPPTEKGEVTVAGV 189

Query: 105 ATG--------------DVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLTKSLSSR 149
            T               D  + +    K+   R +     V +   G  G      + R
Sbjct: 190 VTNWTLVTQAHGTQCCMDPNVIELAGYKNDGTRDLSQKHGVILSTTGHDGPFGAFCAKR 248


>3cgv_A Geranylgeranyl reductase related protein; NP_393992.1,
           geranylgeranyl bacteriochlorophyll reductase- like FIXC
           homolog; HET: MSE FAD UNL; 1.60A {Thermoplasma
           acidophilum dsm 1728} PDB: 3oz2_A*
          Length = 397

 Score = 37.7 bits (88), Expect = 8e-04
 Identities = 22/104 (21%), Positives = 37/104 (35%), Gaps = 14/104 (13%)

Query: 43  SKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVK 102
           S++  I +      N  G YV+      K L   A   G +++   PA  V+   +G V 
Sbjct: 79  SEKRPIILQSEKAGNEVG-YVLERDKFDKHLAALAAKAGADVWVKSPALGVIKE-NGKVA 136

Query: 103 GIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLTKSL 146
           G       I  +           ++ AK+ I A+G      +  
Sbjct: 137 G-----AKIRHNNEIV-------DVRAKMVIAADGFESEFGRWA 168


>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein
           structure initiative, northeast structural genomics
           consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}
          Length = 421

 Score = 35.5 bits (82), Expect = 0.004
 Identities = 16/85 (18%), Positives = 32/85 (37%), Gaps = 13/85 (15%)

Query: 62  YVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTF 121
           + V  G+  K L ++A   GV++   +  +++ + G  SV  I   +             
Sbjct: 101 WQVPRGNFDKTLADEAARQGVDVEYEVGVTDIKFFGTDSVTTIEDIN------------- 147

Query: 122 ARGMELHAKVTIFAEGCHGHLTKSL 146
               E+ A+  I A G    + +  
Sbjct: 148 GNKREIEARFIIDASGYGRVIPRMF 172


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 33.5 bits (76), Expect = 0.028
 Identities = 30/171 (17%), Positives = 61/171 (35%), Gaps = 41/171 (23%)

Query: 4   LSGAVIDPIALNELLPDWKDLGAPLNTPVQEDKFAYLTKSKRIGIPI-LPGMPMNNHGNY 62
           LS  +   +   ++     ++   L  P       YL     + IPI  P + +    +Y
Sbjct: 195 LSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYL-----LSIPISCPLIGVIQLAHY 249

Query: 63  VVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGS---VKGIATGDVGIAKDGSPKD 119
           VV            A+ +G    PG    E+  +  G+    +G+ T  V IA+  S  +
Sbjct: 250 VV-----------TAKLLGFT--PG----ELRSYLKGATGHSQGLVTA-VAIAETDS-WE 290

Query: 120 TF----ARGMELHAKVTIFAEGCHGHLTKSLSS-RFNLRGQCMSSG---PT 162
           +F     + + +     +F  G   +     +S   ++    + +    P+
Sbjct: 291 SFFVSVRKAITV-----LFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPS 336



 Score = 31.9 bits (72), Expect = 0.084
 Identities = 22/103 (21%), Positives = 34/103 (33%), Gaps = 14/103 (13%)

Query: 74   GEQAEAMGVEIYPGIP-ASEVLYHGDGSVK---GIATGDVGIAKDGSPKDTF----ARGM 125
            G Q + MG+++Y     A +V    D   K   G +  D  I  +     T      +G 
Sbjct: 1625 GSQEQGMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILD--IVINNPVNLTIHFGGEKGK 1682

Query: 126  ELHAKVT--IFAEGCHGHL-TKSLSSRFNLRG-QCMSSGPTGL 164
             +    +  IF     G L T+ +    N            GL
Sbjct: 1683 RIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGL 1725


>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol
           biosynthesis, halogenation reaction, structural
           genomics; HET: FAD; 2.20A {Streptomyces venezuelae}
          Length = 591

 Score = 33.0 bits (75), Expect = 0.031
 Identities = 12/76 (15%), Positives = 26/76 (34%), Gaps = 13/76 (17%)

Query: 71  KWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAK 130
           K L ++A + G+ ++   P ++V       V                       + + + 
Sbjct: 132 KLLLDEARSRGITVHEETPVTDVDLSDPDRVVLTVRRG-------------GESVTVESD 178

Query: 131 VTIFAEGCHGHLTKSL 146
             I A G  G +++ L
Sbjct: 179 FVIDAGGSGGPISRKL 194


>3cym_A Uncharacterized protein BAD_0989; structural genomics, unknown
          function; 2.10A {Bifidobacterium adolescentis atcc
          1570ORGANISM_TAXID}
          Length = 440

 Score = 32.9 bits (75), Expect = 0.039
 Identities = 8/26 (30%), Positives = 11/26 (42%)

Query: 7  AVIDPIALNELLPDWKDLGAPLNTPV 32
           ++DP AL     DW D    +   V
Sbjct: 70 GLLDPQALAAAGADWNDFNRAVGDAV 95


>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD;
           2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4
           d.168.1.1 PDB: 1d4e_A* 1d4c_A*
          Length = 572

 Score = 32.0 bits (73), Expect = 0.078
 Identities = 13/71 (18%), Positives = 22/71 (30%), Gaps = 11/71 (15%)

Query: 67  GHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGME 126
            HV + L + A   G +I        +L    G V G+    +   +             
Sbjct: 255 AHVAQVLWDNAVKRGTDIRLNSRVVRILEDASGKVTGV----LVKGEYTGYY-------V 303

Query: 127 LHAKVTIFAEG 137
           + A   + A G
Sbjct: 304 IKADAVVIAAG 314


>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM
           FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3
           c.3.1.4 d.168.1.1
          Length = 566

 Score = 31.6 bits (72), Expect = 0.11
 Identities = 13/71 (18%), Positives = 25/71 (35%), Gaps = 11/71 (15%)

Query: 67  GHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGME 126
             ++  L + A+  G++        +++ + D SV G     V   K             
Sbjct: 250 PEIIDTLRKAAKEQGIDTRLNSRVVKLVVNDDHSVVGA----VVHGKHTGYY-------M 298

Query: 127 LHAKVTIFAEG 137
           + AK  + A G
Sbjct: 299 IGAKSVVLATG 309


>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase,
           dehydogenase, steroid catabolism; HET: FAD; 1.60A
           {Rhodococcus jostii} PDB: 4at2_A*
          Length = 510

 Score = 30.8 bits (70), Expect = 0.18
 Identities = 13/58 (22%), Positives = 21/58 (36%), Gaps = 5/58 (8%)

Query: 67  GHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARG 124
             ++K L E AE +GV     +    ++    G V G     +   + G      AR 
Sbjct: 202 YMLMKPLVETAEKLGVRAEYDMRVQTLVTDDTGRVVG-----IVAKQYGKEVAVRARR 254


>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome,
           mesaconate, oxidoreductase; HET: HEM FAD; 1.50A
           {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4
           d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A*
           1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A*
           1q9i_A* 1lj1_A*
          Length = 571

 Score = 30.4 bits (69), Expect = 0.27
 Identities = 17/71 (23%), Positives = 25/71 (35%), Gaps = 11/71 (15%)

Query: 67  GHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGME 126
            HVV+ L + A    +++       EVL    G+VKGI    +                 
Sbjct: 255 AHVVQVLYDNAVKRNIDLRMNTRGIEVLKDDKGTVKGI----LVKGMYKGYY-------W 303

Query: 127 LHAKVTIFAEG 137
           + A   I A G
Sbjct: 304 VKADAVILATG 314


>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone,
           DEGP, DEGQ hydrolase; 2.60A {Escherichia coli}
          Length = 345

 Score = 28.4 bits (64), Expect = 1.2
 Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 12/74 (16%)

Query: 67  GHVVK-WLG--------EQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSP 117
           G + +  LG        + A+A  +++  G   SEVL     +  G+  GD+  + +G P
Sbjct: 235 GEIKRGLLGIKGTEMSADIAKAFNLDVQRGAFVSEVLPGSGSAKAGVKAGDIITSLNGKP 294

Query: 118 KDTFARGMELHAKV 131
            ++FA   EL +++
Sbjct: 295 LNSFA---ELRSRI 305


>1usc_A Putative styrene monooxygenase small component; FMN-binding
           protein, structural genomics, riken structural
           genomics/proteomics initiative; HET: FMN; 1.24A {Thermus
           thermophilus} SCOP: b.45.1.2 PDB: 1usf_A*
          Length = 178

 Score = 27.3 bits (61), Expect = 1.9
 Identities = 19/76 (25%), Positives = 27/76 (35%), Gaps = 13/76 (17%)

Query: 34  EDKFAYLTKSKRIGIPILPGMPMN---------NHGNYVVRLGHVVK-WLGEQAEAMGVE 83
            DK          G+PIL G               G++ + +G VV  W  E        
Sbjct: 94  VDKGQAPHFLGHTGVPILEGAYAAYELELLEVHTFGDHDLFVGRVVAVWEEEGLLDEKGR 153

Query: 84  IYPGIPASEVLYHGDG 99
             PG+    +LY+G G
Sbjct: 154 PKPGLA---LLYYGKG 166


>4e2q_A Ureidoglycine aminohydrolase; BI-cupin, manganese binding,
           endoplasmic RET hydrolase; 2.50A {Arabidopsis thaliana}
           PDB: 4e2s_A
          Length = 266

 Score = 27.3 bits (60), Expect = 2.2
 Identities = 19/88 (21%), Positives = 31/88 (35%), Gaps = 2/88 (2%)

Query: 7   AVIDPIAL-NELLPDWKD-LGAPLNTPVQEDKFAYLTKSKRIGIPILPGMPMNNHGNYVV 64
           A+I P +     LPDW + LGA L TP     F       +                +VV
Sbjct: 38  ALITPESHVYSPLPDWTNTLGAYLITPATGSHFVMYLAKMKEMSSSGLPPQDIERLIFVV 97

Query: 65  RLGHVVKWLGEQAEAMGVEIYPGIPASE 92
                +      ++ + V+ Y  +P + 
Sbjct: 98  EGAVTLTNTSSSSKKLTVDSYAYLPPNF 125


>2qfl_A Inositol-1-monophosphatase; impase extragenic suppressor,
           dimerization, hydrolase; 1.90A {Escherichia coli}
          Length = 267

 Score = 27.1 bits (61), Expect = 2.5
 Identities = 11/29 (37%), Positives = 13/29 (44%), Gaps = 1/29 (3%)

Query: 1   GHILSGAVIDPIALNELLPDWKDLGAPLN 29
           G      V DP+  NEL    +  GA LN
Sbjct: 109 GRTEVAVVYDPM-RNELFTATRGQGAQLN 136


>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A
           {Desulfovibrio gigas}
          Length = 662

 Score = 27.3 bits (60), Expect = 2.9
 Identities = 21/134 (15%), Positives = 40/134 (29%), Gaps = 14/134 (10%)

Query: 20  DWKDLGAPLNTPVQEDKFAYLTKSKRIGIPILPGMPMNNHGNYVV-RLGHVVKW-LGEQA 77
            +++ G P+    +        ++K  G  +  G      G + +   G   K  + E A
Sbjct: 117 LFEEWGLPVWIKDEHGHNLDGAQAKAAGKSLRNGDKPVRSGRWQIMINGESYKVIVAEAA 176

Query: 78  --EAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGI-AKDGSPKDTFARGMELHAKVTIF 134
                   I   I   ++L   D +      G VG   +               A   + 
Sbjct: 177 KNALGQDRIIERIFIVKLLL--DKNTPNRIAGAVGFNLRAN----EVHI---FKANAMVV 227

Query: 135 AEGCHGHLTKSLSS 148
           A G   ++ +  S 
Sbjct: 228 ACGGAVNVYRPRSV 241


>3lv0_A Extragenic suppressor protein SUHB; niaid, seattle structural
           genomics center for infectious disease, ssgcid, CAT
           scratch disease; 1.85A {Bartonella henselae} PDB: 3luz_A
          Length = 267

 Score = 26.7 bits (60), Expect = 3.3
 Identities = 10/29 (34%), Positives = 16/29 (55%), Gaps = 1/29 (3%)

Query: 1   GHILSGAVIDPIALNELLPDWKDLGAPLN 29
           G I++G + +PI  +EL    +  GA  N
Sbjct: 115 GKIVAGVIYNPI-NDELFTAERGSGAFFN 142


>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate
           binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A
           {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2
           d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*
          Length = 830

 Score = 27.0 bits (60), Expect = 3.4
 Identities = 9/38 (23%), Positives = 16/38 (42%), Gaps = 1/38 (2%)

Query: 69  VVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIAT 106
            V+ L ++ E+ GV        + +   G   V G+ T
Sbjct: 153 AVQLLIKRTESAGVTYRGSTTVTGIEQSGGR-VTGVQT 189


>2pcr_A Inositol-1-monophosphatase; bipolar disorder, struct genomics,
           NPPSFA, national project on protein structural AN
           functional analyses; 2.60A {Aquifex aeolicus}
          Length = 264

 Score = 26.3 bits (59), Expect = 4.4
 Identities = 10/29 (34%), Positives = 14/29 (48%), Gaps = 1/29 (3%)

Query: 1   GHILSGAVIDPIALNELLPDWKDLGAPLN 29
              + GAV  P   ++L    K LGA +N
Sbjct: 111 EEPIVGAVYLPY-FDKLYWGAKGLGAYVN 138


>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD,
           disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A
           {Escherichia coli} SCOP: c.3.1.5 c.3.1.5
          Length = 310

 Score = 25.9 bits (58), Expect = 7.3
 Identities = 12/64 (18%), Positives = 20/64 (31%), Gaps = 16/64 (25%)

Query: 75  EQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKD-TFARGMELHAKVTI 133
              +   V++     AS++               +  A +G       A G  L A+  I
Sbjct: 64  VHVDEYDVDVIDSQSASKL---------------IPAAVEGGLHQIETASGAVLKARSII 108

Query: 134 FAEG 137
            A G
Sbjct: 109 VATG 112


>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate
           hydrogen bond, nucleotide binding fold, thior reductase,
           thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium}
           SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A
           1zyp_A
          Length = 521

 Score = 25.7 bits (57), Expect = 8.7
 Identities = 14/66 (21%), Positives = 20/66 (30%), Gaps = 16/66 (24%)

Query: 73  LGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKD-TFARGMELHAKV 131
           L        V++     AS++               V  A +G       A G  L A+ 
Sbjct: 273 LKAHVSDYDVDVIDSQSASKL---------------VPAATEGGLHQIETASGAVLKARS 317

Query: 132 TIFAEG 137
            I A G
Sbjct: 318 IIIATG 323


>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex,
           oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis}
           SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*
          Length = 382

 Score = 25.6 bits (57), Expect = 9.4
 Identities = 12/41 (29%), Positives = 16/41 (39%), Gaps = 2/41 (4%)

Query: 68  HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGD 108
            V K   + A+ +G EI+   P   V    DG    I T  
Sbjct: 165 FVCKAYVKAAKMLGAEIFEHTPVLHV--ERDGEALFIKTPS 203


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.317    0.139    0.426 

Gapped
Lambda     K      H
   0.267   0.0564    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,670,533
Number of extensions: 158065
Number of successful extensions: 385
Number of sequences better than 10.0: 1
Number of HSP's gapped: 381
Number of HSP's successfully gapped: 39
Length of query: 165
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 79
Effective length of database: 4,300,587
Effective search space: 339746373
Effective search space used: 339746373
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.6 bits)