RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy9486
         (165 letters)



>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer
           flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus
           scrofa) [TaxId: 9823]}
          Length = 380

 Score =  114 bits (286), Expect = 1e-31
 Identities = 111/157 (70%), Positives = 128/157 (81%)

Query: 1   GHILSGAVIDPIALNELLPDWKDLGAPLNTPVQEDKFAYLTKSKRIGIPILPGMPMNNHG 60
            H LSGA +DP A  EL PDWK+ GAPLNTPV ED+F  LT+  RI +PILPG+PMNNHG
Sbjct: 75  AHTLSGACLDPRAFEELFPDWKEKGAPLNTPVTEDRFGILTEKYRIPVPILPGLPMNNHG 134

Query: 61  NYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDT 120
           NYVVRLGH+V W+GEQAEA+GVE+YPG  A+E+L+H DGSVKGIAT DVGI KDG+PK T
Sbjct: 135 NYVVRLGHLVSWMGEQAEALGVEVYPGYAAAEILFHEDGSVKGIATNDVGIQKDGAPKTT 194

Query: 121 FARGMELHAKVTIFAEGCHGHLTKSLSSRFNLRGQCM 157
           F RG+ELHAKVTIFAEGCHGHL K L  +F+LR  C 
Sbjct: 195 FERGLELHAKVTIFAEGCHGHLAKQLYKKFDLRANCE 231


>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale
           cress(Arabidopsis thaliana) [TaxId: 3702]}
          Length = 278

 Score = 41.4 bits (96), Expect = 2e-05
 Identities = 14/113 (12%), Positives = 35/113 (30%), Gaps = 5/113 (4%)

Query: 44  KRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKG 103
             IG+        + +             + +      V+++  + A +++  G+  V G
Sbjct: 94  DEIGVAY---DEQDTYVVVKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGNR-VGG 149

Query: 104 IATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLTKSLSSRFNLRGQC 156
           + T    +        +      + AK+ + + G  G    +   R    G  
Sbjct: 150 VVTN-WALVAQNHHTQSCMDPNVMEAKIVVSSCGHDGPFGATGVKRLKSIGMI 201


>d2gjva1 d.323.1.2 (A:1-134) Putative cytoplasmic protein STM4215
           {Salmonella typhimurium [TaxId: 90371]}
          Length = 134

 Score = 26.7 bits (59), Expect = 1.1
 Identities = 10/65 (15%), Positives = 20/65 (30%), Gaps = 4/65 (6%)

Query: 69  VVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELH 128
           V   L E    M + I        +      +V     G    +    P++T A   +  
Sbjct: 10  VANRLRELNPDMDIHISSTDAKVYIPTGQQVTVLIHYCG----SVFAEPENTDATVQKQL 65

Query: 129 AKVTI 133
            +++ 
Sbjct: 66  IRISA 70


>d1h8ua_ d.169.1.1 (A:) Eosinophil major basic protein {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 115

 Score = 25.7 bits (55), Expect = 1.6
 Identities = 7/49 (14%), Positives = 16/49 (32%)

Query: 24  LGAPLNTPVQEDKFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKW 72
           +G  +    +  +F ++  S+          P +  G+ V        W
Sbjct: 52  IGGRITGSGRCRRFQWVDGSRWNFAYWAAHQPWSRGGHCVALCTRGGYW 100


>d1gppa_ b.86.1.2 (A:) VMA1-derived endonuclease (VDE) PI-Scei
           intein {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
           4932]}
          Length = 229

 Score = 24.9 bits (54), Expect = 5.6
 Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 5/34 (14%)

Query: 98  DGSVK---GIATGDVGIAKDGSPKD--TFARGME 126
           DGS++    I  G+  + KDG P++     RG E
Sbjct: 14  DGSIECIENIEVGNKVMGKDGRPREVIKLPRGSE 47


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.139    0.426 

Gapped
Lambda     K      H
   0.267   0.0476    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 640,209
Number of extensions: 28691
Number of successful extensions: 68
Number of sequences better than 10.0: 1
Number of HSP's gapped: 68
Number of HSP's successfully gapped: 9
Length of query: 165
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 86
Effective length of database: 1,322,926
Effective search space: 113771636
Effective search space used: 113771636
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.3 bits)