BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9487
(101 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q921G7|ETFD_MOUSE Electron transfer flavoprotein-ubiquinone oxidoreductase,
mitochondrial OS=Mus musculus GN=Etfdh PE=1 SV=1
Length = 616
Score = 167 bits (423), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 75/98 (76%), Positives = 86/98 (87%)
Query: 4 GMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIA 63
G+PMNNHGNY+VRLGH+V W+GEQAEA+GVE+YPG A+EVLYH DGSVKGIAT DVGI
Sbjct: 162 GLPMNNHGNYIVRLGHLVSWMGEQAEALGVEVYPGYAAAEVLYHEDGSVKGIATNDVGIQ 221
Query: 64 KDGSPKDTFARGMELHAKVTIFAEGCHGHLTKSLSSRF 101
KDG+PK TF RG+ELHAKVT+FAEGCHGHL K L +F
Sbjct: 222 KDGAPKTTFERGLELHAKVTVFAEGCHGHLAKQLYKKF 259
>sp|Q2KIG0|ETFD_BOVIN Electron transfer flavoprotein-ubiquinone oxidoreductase,
mitochondrial OS=Bos taurus GN=ETFDH PE=2 SV=1
Length = 617
Score = 166 bits (421), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 75/98 (76%), Positives = 86/98 (87%)
Query: 4 GMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIA 63
G+PMNNHGNY+VRLGH+V W+GEQAEA+GVE+YPG A+EVL+H DGSVKGIAT DVGI
Sbjct: 163 GLPMNNHGNYIVRLGHLVSWMGEQAEALGVEVYPGYAAAEVLFHEDGSVKGIATNDVGIQ 222
Query: 64 KDGSPKDTFARGMELHAKVTIFAEGCHGHLTKSLSSRF 101
KDG+PK TF RG+ELHAKVTIFAEGCHGHL K L +F
Sbjct: 223 KDGAPKTTFERGLELHAKVTIFAEGCHGHLAKQLYRKF 260
>sp|Q6UPE1|ETFD_RAT Electron transfer flavoprotein-ubiquinone oxidoreductase,
mitochondrial OS=Rattus norvegicus GN=Etfdh PE=2 SV=1
Length = 616
Score = 166 bits (421), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 75/98 (76%), Positives = 85/98 (86%)
Query: 4 GMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIA 63
G+PMNNHGNY+VRLGH+V W+GEQAEA+GVE+YPG A+EVLYH DGSVKGIAT DVGI
Sbjct: 162 GLPMNNHGNYIVRLGHLVSWMGEQAEALGVEVYPGYAAAEVLYHEDGSVKGIATNDVGIQ 221
Query: 64 KDGSPKDTFARGMELHAKVTIFAEGCHGHLTKSLSSRF 101
KDG+PK TF RG+ELHAKVTIFAEGCHGHL K +F
Sbjct: 222 KDGAPKTTFERGLELHAKVTIFAEGCHGHLAKQFYKKF 259
>sp|P55931|ETFD_PIG Electron transfer flavoprotein-ubiquinone oxidoreductase,
mitochondrial OS=Sus scrofa GN=ETFDH PE=1 SV=2
Length = 617
Score = 166 bits (420), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 75/98 (76%), Positives = 86/98 (87%)
Query: 4 GMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIA 63
G+PMNNHGNYVVRLGH+V W+GEQAEA+GVE+YPG A+E+L+H DGSVKGIAT DVGI
Sbjct: 163 GLPMNNHGNYVVRLGHLVSWMGEQAEALGVEVYPGYAAAEILFHEDGSVKGIATNDVGIQ 222
Query: 64 KDGSPKDTFARGMELHAKVTIFAEGCHGHLTKSLSSRF 101
KDG+PK TF RG+ELHAKVTIFAEGCHGHL K L +F
Sbjct: 223 KDGAPKTTFERGLELHAKVTIFAEGCHGHLAKQLYKKF 260
>sp|Q16134|ETFD_HUMAN Electron transfer flavoprotein-ubiquinone oxidoreductase,
mitochondrial OS=Homo sapiens GN=ETFDH PE=1 SV=2
Length = 617
Score = 166 bits (420), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 75/98 (76%), Positives = 86/98 (87%)
Query: 4 GMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIA 63
G+PMNNHGNY+VRLGH+V W+GEQAEA+GVE+YPG A+EVL+H DGSVKGIAT DVGI
Sbjct: 163 GLPMNNHGNYIVRLGHLVSWMGEQAEALGVEVYPGYAAAEVLFHDDGSVKGIATNDVGIQ 222
Query: 64 KDGSPKDTFARGMELHAKVTIFAEGCHGHLTKSLSSRF 101
KDG+PK TF RG+ELHAKVTIFAEGCHGHL K L +F
Sbjct: 223 KDGAPKATFERGLELHAKVTIFAEGCHGHLAKQLYKKF 260
>sp|Q5RDD3|ETFD_PONAB Electron transfer flavoprotein-ubiquinone oxidoreductase,
mitochondrial OS=Pongo abelii GN=ETFDH PE=2 SV=1
Length = 617
Score = 166 bits (420), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 75/98 (76%), Positives = 86/98 (87%)
Query: 4 GMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIA 63
G+PMNNHGNY+VRLGH+V W+GEQAEA+GVE+YPG A+EVL+H DGSVKGIAT DVGI
Sbjct: 163 GLPMNNHGNYIVRLGHLVSWMGEQAEALGVEVYPGYAAAEVLFHDDGSVKGIATNDVGIQ 222
Query: 64 KDGSPKDTFARGMELHAKVTIFAEGCHGHLTKSLSSRF 101
KDG+PK TF RG+ELHAKVTIFAEGCHGHL K L +F
Sbjct: 223 KDGAPKATFERGLELHAKVTIFAEGCHGHLAKQLYKKF 260
>sp|Q11190|ETFD_CAEEL Electron transfer flavoprotein-ubiquinone oxidoreductase,
mitochondrial OS=Caenorhabditis elegans GN=let-721 PE=1
SV=2
Length = 597
Score = 155 bits (392), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 72/98 (73%), Positives = 83/98 (84%)
Query: 4 GMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIA 63
G+P+ NHGNY+VRLG VV+WLGEQAEA GVE++P I ASEVLY+ DGSVKGIAT DVGI
Sbjct: 145 GVPLANHGNYIVRLGKVVQWLGEQAEAAGVEVWPEIAASEVLYNEDGSVKGIATSDVGIG 204
Query: 64 KDGSPKDTFARGMELHAKVTIFAEGCHGHLTKSLSSRF 101
KDG+PKD FARGME HAK TIFAEGC GHL+K + +F
Sbjct: 205 KDGAPKDGFARGMEFHAKCTIFAEGCRGHLSKQVLDKF 242
>sp|Q54XM6|ETFD_DICDI Electron transfer flavoprotein-ubiquinone oxidoreductase,
mitochondrial OS=Dictyostelium discoideum GN=etfdh PE=3
SV=1
Length = 606
Score = 138 bits (348), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 63/95 (66%), Positives = 78/95 (82%)
Query: 7 MNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDG 66
M+N GNY++ LG+VV+WLGEQAE+MGVE+YP ASEVLYH +G+V+GIAT D+GIAKDG
Sbjct: 152 MHNEGNYIISLGNVVRWLGEQAESMGVEVYPSFAASEVLYHDNGAVRGIATNDMGIAKDG 211
Query: 67 SPKDTFARGMELHAKVTIFAEGCHGHLTKSLSSRF 101
S F RGMEL+A++TIFAEGC G LTK L +F
Sbjct: 212 SLTSNFTRGMELNARLTIFAEGCRGSLTKGLFEKF 246
>sp|P94132|ETFD_ACIAD Probable electron transfer flavoprotein-ubiquinone oxidoreductase
OS=Acinetobacter sp. (strain ADP1) GN=etfD PE=4 SV=1
Length = 570
Score = 129 bits (325), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 59/95 (62%), Positives = 74/95 (77%)
Query: 7 MNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDG 66
M+N GNYV+ LG+VV+WLG++AE + V I+PG A+E+LYH DG+VKGI TGD+GI KDG
Sbjct: 111 MHNDGNYVISLGNVVRWLGQKAEELEVSIFPGFAAAEILYHADGTVKGIQTGDMGIGKDG 170
Query: 67 SPKDTFARGMELHAKVTIFAEGCHGHLTKSLSSRF 101
P FA G ELHAK T+FAEGC GHL K L ++F
Sbjct: 171 EPTHNFAPGYELHAKYTLFAEGCRGHLGKRLINKF 205
>sp|P87111|ETFD_SCHPO Probable electron transfer flavoprotein-ubiquinone oxidoreductase,
mitochondrial OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=SPAC20G8.04c PE=3 SV=1
Length = 632
Score = 120 bits (301), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 56/95 (58%), Positives = 65/95 (68%)
Query: 7 MNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDG 66
M NHGNYV+ L +WL +AE GVEIYP ASEVLY+ DGSV G+AT D G+ G
Sbjct: 186 MKNHGNYVMSLAEFTRWLAAKAEEYGVEIYPSFAASEVLYNKDGSVIGVATNDFGVDSKG 245
Query: 67 SPKDTFARGMELHAKVTIFAEGCHGHLTKSLSSRF 101
PKD F RGM HA VT+FAEG HG L+KS+ RF
Sbjct: 246 LPKDNFERGMAFHAPVTLFAEGAHGSLSKSIIKRF 280
>sp|Q9HZP5|ETFD_PSEAE Electron transfer flavoprotein-ubiquinone oxidoreductase
OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C
/ PRS 101 / LMG 12228) GN=PA2953 PE=1 SV=1
Length = 551
Score = 110 bits (275), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 49/96 (51%), Positives = 70/96 (72%), Gaps = 1/96 (1%)
Query: 7 MNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDG 66
M+N GNY++ LG++ +WL +QAE +GVEIYPG A E L +G V+GI TGD+G+ ++G
Sbjct: 107 MHNEGNYIISLGNLCRWLAQQAEGLGVEIYPGFAAQEALIDENGVVRGIVTGDLGVDREG 166
Query: 67 SPKD-TFARGMELHAKVTIFAEGCHGHLTKSLSSRF 101
+PK+ + GMEL AK T+FAEGC GH+ K L ++
Sbjct: 167 NPKEGYYTPGMELRAKYTLFAEGCRGHIGKQLIKKY 202
>sp|Q08822|ETFD_YEAST Probable electron transfer flavoprotein-ubiquinone oxidoreductase,
mitochondrial OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=CIR2 PE=1 SV=1
Length = 631
Score = 109 bits (273), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 49/95 (51%), Positives = 68/95 (71%)
Query: 7 MNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDG 66
+N NY+V L VV +LGE+AE +GVE+YPGI S+++Y + +VKG+ T D GI+K G
Sbjct: 165 INKGRNYIVSLNQVVGYLGEKAEEVGVEVYPGIAVSDLIYDENNAVKGVITKDAGISKSG 224
Query: 67 SPKDTFARGMELHAKVTIFAEGCHGHLTKSLSSRF 101
PK+TF RGME A+ T+ AEGCHG LTK +++
Sbjct: 225 KPKETFERGMEFWARQTVLAEGCHGSLTKQALAKY 259
>sp|P77337|YDIS_ECOLI Probable electron transfer flavoprotein-quinone oxidoreductase YdiS
OS=Escherichia coli (strain K12) GN=ydiS PE=3 SV=1
Length = 429
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 38/89 (42%), Gaps = 17/89 (19%)
Query: 9 NHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSP 68
H +Y V + WL EQAE G + PG+ ++ G+ V G+ GD
Sbjct: 99 QHASYTVLRNRLDPWLMEQAEQAGAQFIPGVRVDALVREGN-KVTGVQAGD--------- 148
Query: 69 KDTFARGMELHAKVTIFAEGCHGHLTKSL 97
D L A V I A+G + L +SL
Sbjct: 149 -DI------LEANVVILADGVNSMLGRSL 170
>sp|Q8ZEB6|FUMC_YERPE Fumarate hydratase class II OS=Yersinia pestis GN=fumC PE=3 SV=1
Length = 465
Score = 35.4 bits (80), Expect = 0.096, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 30/64 (46%)
Query: 2 AFGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVG 61
A G +N H Y VR+ + + L Q + + + L HG G++KG+A +
Sbjct: 231 AVGTGLNTHPEYAVRVANEIATLTRQPFITAPNKFESLGTCDALVHGHGALKGLAASLMK 290
Query: 62 IAKD 65
IA D
Sbjct: 291 IAND 294
>sp|Q8ZRW9|FIXC_SALTY Protein FixC OS=Salmonella typhimurium (strain LT2 / SGSC1412 /
ATCC 700720) GN=fixC PE=3 SV=1
Length = 428
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 37/87 (42%), Gaps = 19/87 (21%)
Query: 12 NYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGI-ATGDVGIAKDGSPKD 70
+Y V WL EQAE G ++ GI V+ DG V G+ A GD+
Sbjct: 102 SYSVLRSKFDAWLMEQAEEAGAQLITGIRVDNVVQR-DGKVVGVEADGDI---------- 150
Query: 71 TFARGMELHAKVTIFAEGCHGHLTKSL 97
L AKV I A+G + L + L
Sbjct: 151 -------LEAKVVILADGVNSLLAEKL 170
>sp|Q8Z9K9|FIXC_SALTI Protein FixC OS=Salmonella typhi GN=fixC PE=3 SV=1
Length = 428
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 37/87 (42%), Gaps = 19/87 (21%)
Query: 12 NYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGI-ATGDVGIAKDGSPKD 70
+Y V WL EQAE G ++ GI V+ DG V G+ A GD+
Sbjct: 102 SYSVLRSKFDAWLMEQAEEAGAQLITGIRVDNVVQR-DGKVVGVEADGDI---------- 150
Query: 71 TFARGMELHAKVTIFAEGCHGHLTKSL 97
L AKV I A+G + L + L
Sbjct: 151 -------LEAKVVILADGVNSLLAEKL 170
>sp|Q7N4H8|FUMC_PHOLL Fumarate hydratase class II OS=Photorhabdus luminescens subsp.
laumondii (strain TT01) GN=fumC PE=3 SV=1
Length = 464
Score = 32.3 bits (72), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 28/64 (43%)
Query: 2 AFGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVG 61
A G +N H Y VR+ + L + + + + L H G++KG+A +
Sbjct: 231 AVGTGLNTHPEYAVRVAKKLAELTNHSFVTAPNKFEALATCDALVHSHGALKGLAASIMK 290
Query: 62 IAKD 65
IA D
Sbjct: 291 IAND 294
>sp|P68644|FIXC_ECOLI Protein FixC OS=Escherichia coli (strain K12) GN=fixC PE=3 SV=1
Length = 428
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 36/90 (40%), Gaps = 19/90 (21%)
Query: 9 NHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGI-ATGDVGIAKDGS 67
+ +Y V WL EQAE G ++ GI L DG V G+ A GDV
Sbjct: 99 SQRSYSVLRSKFDAWLMEQAEEAGAQLITGIRVDN-LVQRDGKVVGVEADGDV------- 150
Query: 68 PKDTFARGMELHAKVTIFAEGCHGHLTKSL 97
+ AK I A+G + L + L
Sbjct: 151 ----------IEAKTVILADGVNSILAEKL 170
>sp|P68645|FIXC_ECOL6 Protein FixC OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928
/ UPEC) GN=fixC PE=3 SV=1
Length = 428
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 36/90 (40%), Gaps = 19/90 (21%)
Query: 9 NHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGI-ATGDVGIAKDGS 67
+ +Y V WL EQAE G ++ GI L DG V G+ A GDV
Sbjct: 99 SQRSYSVLRSKFDAWLMEQAEEAGAQLITGIRVDN-LVQRDGKVVGVEADGDV------- 150
Query: 68 PKDTFARGMELHAKVTIFAEGCHGHLTKSL 97
+ AK I A+G + L + L
Sbjct: 151 ----------IEAKTVILADGVNSILAEKL 170
>sp|Q7AHT0|FIXC_ECO57 Protein FixC OS=Escherichia coli O157:H7 GN=fixC PE=3 SV=1
Length = 428
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 36/90 (40%), Gaps = 19/90 (21%)
Query: 9 NHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGI-ATGDVGIAKDGS 67
+ +Y V WL EQAE G ++ GI L DG V G+ A GDV
Sbjct: 99 SQRSYSVLRSKFDAWLMEQAEEAGAQLITGIRVDN-LVQRDGKVVGVEADGDV------- 150
Query: 68 PKDTFARGMELHAKVTIFAEGCHGHLTKSL 97
+ AK I A+G + L + L
Sbjct: 151 ----------IEAKTVILADGVNSILAEKL 170
>sp|P0C0V0|DEGP_ECOLI Periplasmic serine endoprotease DegP OS=Escherichia coli (strain
K12) GN=degP PE=1 SV=1
Length = 474
Score = 31.2 bits (69), Expect = 2.0, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 26/48 (54%)
Query: 26 EQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFA 73
E A+AM V+ G S+VL + + GI GDV + +G P +FA
Sbjct: 301 ELAKAMKVDAQRGAFVSQVLPNSSAAKAGIKAGDVITSLNGKPISSFA 348
>sp|P0C0V1|DEGP_ECO57 Periplasmic serine endoprotease DegP OS=Escherichia coli O157:H7
GN=degP PE=3 SV=1
Length = 474
Score = 31.2 bits (69), Expect = 2.0, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 26/48 (54%)
Query: 26 EQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFA 73
E A+AM V+ G S+VL + + GI GDV + +G P +FA
Sbjct: 301 ELAKAMKVDAQRGAFVSQVLPNSSAAKAGIKAGDVITSLNGKPISSFA 348
>sp|Q83SQ7|FIXC_SHIFL Protein FixC OS=Shigella flexneri GN=fixC PE=3 SV=1
Length = 428
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 36/90 (40%), Gaps = 19/90 (21%)
Query: 9 NHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGI-ATGDVGIAKDGS 67
+ +Y V WL EQAE G ++ GI L DG V G+ A GDV
Sbjct: 99 SQRSYSVLRSKFDAWLMEQAEEAGAQLITGIRVDN-LVQRDGKVVGVEADGDV------- 150
Query: 68 PKDTFARGMELHAKVTIFAEGCHGHLTKSL 97
+ AK + A+G + L + L
Sbjct: 151 ----------IEAKTVLLADGVNSILAEKL 170
>sp|O06264|ECCC4_MYCTU ESX-4 secretion system protein EccC4 OS=Mycobacterium tuberculosis
GN=eccC4 PE=3 SV=1
Length = 1236
Score = 30.8 bits (68), Expect = 2.3, Method: Composition-based stats.
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
Query: 5 MPMNNHGNYVVRLG---HVVKWLGEQAEAMGVEIYPGIPA-SEVLYHGDGSVKGIATGDV 60
+P N H N LG V L E A+ + + A + G+G++ G+ T +V
Sbjct: 255 LPHNQHPNACDALGPAPMVYSTLAEMQNALAATVLAHVVAIVDTAERGNGAITGVITIEV 314
Query: 61 GIAKDGSP 68
G +DG+P
Sbjct: 315 GARRDGAP 322
>sp|P45129|HTOA_HAEIN Probable periplasmic serine protease do/HhoA-like OS=Haemophilus
influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
GN=HI_1259 PE=3 SV=1
Length = 466
Score = 30.8 bits (68), Expect = 2.5, Method: Composition-based stats.
Identities = 30/106 (28%), Positives = 42/106 (39%), Gaps = 15/106 (14%)
Query: 1 MAFGMPMNNHGNYV---VRLGHVVKWL---------GEQAEAMGVEIYPGIPASEVLYHG 48
+AF +P N N V + G V + L + A+A V G SEVL
Sbjct: 254 IAFAIPSNQASNLVQQILEFGQVRRGLLGIKGGELNADLAKAFNVSAQQGAFVSEVLPKS 313
Query: 49 DGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLT 94
G+ GD+ A +G +FA E+ AK+ G LT
Sbjct: 314 AAEKAGLKAGDIITAMNGQKISSFA---EIRAKIATTGAGKEISLT 356
>sp|Q46904|YGCN_ECOLI Probable electron transfer flavoprotein-quinone oxidoreductase YgcN
OS=Escherichia coli (strain K12) GN=ygcN PE=3 SV=2
Length = 423
Score = 30.8 bits (68), Expect = 2.7, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 23 WLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGD 59
WL +AE GVE PG + LY +G V G+ GD
Sbjct: 107 WLVAEAEKEGVECIPG-ATVDALYEENGRVCGVICGD 142
>sp|F6AA62|DEGPL_PSEF1 Probable periplasmic serine endoprotease DegP-like OS=Pseudomonas
fulva (strain 12-X) GN=Psefu_3239 PE=3 SV=1
Length = 479
Score = 30.8 bits (68), Expect = 2.8, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 12/80 (15%)
Query: 1 MAFGMPMNNHGNYVVRL---GHVVK-WLG--------EQAEAMGVEIYPGIPASEVLYHG 48
++F +PM+ + +L G V + WLG + AE+ G+E G ++VL G
Sbjct: 249 LSFAIPMSVAMDVADQLKASGKVSRGWLGVVIQEVNKDLAESFGLEKPAGALVAQVLEDG 308
Query: 49 DGSVKGIATGDVGIAKDGSP 68
+ G+ GDV ++ DG P
Sbjct: 309 PAAKGGLQVGDVILSLDGKP 328
>sp|Q473L9|PPNK_CUPPJ Probable inorganic polyphosphate/ATP-NAD kinase OS=Cupriavidus
pinatubonensis (strain JMP134 / LMG 1197) GN=ppnK PE=3
SV=2
Length = 305
Score = 30.4 bits (67), Expect = 3.4, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 8/59 (13%)
Query: 6 PMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASE--------VLYHGDGSVKGIA 56
P+ +Y++R G V + E + A G+ YP + A E V+ GDG++ GIA
Sbjct: 31 PLEELASYILRNGQDVVFERETSLATGLTGYPALTAEEIGREADVAVVLGGDGTLLGIA 89
>sp|P26982|DEGP_SALTY Periplasmic serine endoprotease DegP OS=Salmonella typhimurium
(strain LT2 / SGSC1412 / ATCC 700720) GN=degP PE=3 SV=1
Length = 475
Score = 30.4 bits (67), Expect = 3.8, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 26/48 (54%)
Query: 26 EQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFA 73
E A+AM V+ G S+V+ + + GI GDV + +G P +FA
Sbjct: 302 ELAKAMKVDAQRGAFVSQVMPNSSAAKAGIKAGDVITSLNGKPISSFA 349
>sp|Q8XW25|PPNK_RALSO Probable inorganic polyphosphate/ATP-NAD kinase OS=Ralstonia
solanacearum (strain GMI1000) GN=ppnK PE=3 SV=1
Length = 302
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 24/47 (51%)
Query: 6 PMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSV 52
P+ + + GH + + E A +GV+ YP +P E+ H D +V
Sbjct: 28 PLLELASCIAARGHDIVFERETALNIGVQDYPALPPDEMARHADVAV 74
>sp|B0KV30|DEGPL_PSEPG Probable periplasmic serine endoprotease DegP-like OS=Pseudomonas
putida (strain GB-1) GN=PputGB1_4377 PE=3 SV=1
Length = 477
Score = 29.6 bits (65), Expect = 6.0, Method: Composition-based stats.
Identities = 21/80 (26%), Positives = 42/80 (52%), Gaps = 12/80 (15%)
Query: 1 MAFGMPMN---NHGNYVVRLGHVVK-WLG--------EQAEAMGVEIYPGIPASEVLYHG 48
++F +P++ + N + + G V + WLG + AE+ G++ G ++VL +G
Sbjct: 248 LSFAIPIDVAIDVSNQLKKDGKVSRGWLGVVIQEVNKDLAESFGLDKPAGALVAQVLENG 307
Query: 49 DGSVKGIATGDVGIAKDGSP 68
+ G+ GDV ++ +G P
Sbjct: 308 PAAKGGLQVGDVILSMNGQP 327
>sp|A5W8F5|DEGPL_PSEP1 Probable periplasmic serine endoprotease DegP-like OS=Pseudomonas
putida (strain F1 / ATCC 700007) GN=Pput_4291 PE=3 SV=1
Length = 477
Score = 29.3 bits (64), Expect = 6.5, Method: Composition-based stats.
Identities = 21/80 (26%), Positives = 42/80 (52%), Gaps = 12/80 (15%)
Query: 1 MAFGMPMN---NHGNYVVRLGHVVK-WLG--------EQAEAMGVEIYPGIPASEVLYHG 48
++F +P++ + N + + G V + WLG + AE+ G++ G ++VL +G
Sbjct: 248 LSFAIPIDVAIDVSNQLKKDGKVSRGWLGVVIQEVNKDLAESFGLDKPAGALVAQVLENG 307
Query: 49 DGSVKGIATGDVGIAKDGSP 68
+ G+ GDV ++ +G P
Sbjct: 308 PAAKGGLQVGDVILSMNGQP 327
>sp|B1J4D7|DEGPL_PSEPW Probable periplasmic serine endoprotease DegP-like OS=Pseudomonas
putida (strain W619) GN=PputW619_1070 PE=3 SV=1
Length = 479
Score = 29.3 bits (64), Expect = 6.6, Method: Composition-based stats.
Identities = 21/80 (26%), Positives = 41/80 (51%), Gaps = 12/80 (15%)
Query: 1 MAFGMPMN---NHGNYVVRLGHVVK-WLG--------EQAEAMGVEIYPGIPASEVLYHG 48
++F +P++ + N + + G V + WLG + AE+ G++ G ++VL G
Sbjct: 248 LSFAIPIDVAIDVSNQLKKDGKVSRGWLGVVIQEVNKDLAESFGLDKPAGALVAQVLEDG 307
Query: 49 DGSVKGIATGDVGIAKDGSP 68
+ G+ GDV ++ +G P
Sbjct: 308 PAAKSGLQVGDVILSMNGQP 327
>sp|P39099|DEGQ_ECOLI Periplasmic pH-dependent serine endoprotease DegQ OS=Escherichia
coli (strain K12) GN=degQ PE=1 SV=1
Length = 455
Score = 29.3 bits (64), Expect = 7.0, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 5/62 (8%)
Query: 28 AEAMGVEIYPGIPASEVLYHGDGSVK-GIATGDVGIAKDGSPKDTFARGMELHAKVTIFA 86
A+A +++ G SEVL G GS K G+ GD+ + +G P ++FA EL +++
Sbjct: 281 AKAFNLDVQRGAFVSEVL-PGSGSAKAGVKAGDIITSLNGKPLNSFA---ELRSRIATTE 336
Query: 87 EG 88
G
Sbjct: 337 PG 338
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.137 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,894,636
Number of Sequences: 539616
Number of extensions: 1605811
Number of successful extensions: 3706
Number of sequences better than 100.0: 42
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 3675
Number of HSP's gapped (non-prelim): 42
length of query: 101
length of database: 191,569,459
effective HSP length: 70
effective length of query: 31
effective length of database: 153,796,339
effective search space: 4767686509
effective search space used: 4767686509
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)