Query psy9487
Match_columns 101
No_of_seqs 100 out of 1037
Neff 6.5
Searched_HMMs 46136
Date Fri Aug 16 20:39:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9487.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9487hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2415|consensus 99.9 2.1E-22 4.5E-27 160.8 9.4 97 5-101 170-266 (621)
2 COG0644 FixC Dehydrogenases (f 99.4 7.9E-13 1.7E-17 103.2 9.2 74 10-99 87-160 (396)
3 PRK10015 oxidoreductase; Provi 99.3 3.5E-11 7.6E-16 95.3 9.7 71 10-97 100-170 (429)
4 PRK04176 ribulose-1,5-biphosph 99.2 2E-10 4.3E-15 86.0 11.0 87 10-100 96-182 (257)
5 PRK10157 putative oxidoreducta 99.2 1.1E-10 2.5E-15 92.2 10.1 70 11-97 101-170 (428)
6 PF04820 Trp_halogenase: Trypt 99.2 8.5E-11 1.8E-15 94.1 7.4 71 11-97 147-217 (454)
7 TIGR00292 thiazole biosynthesi 99.1 9.8E-10 2.1E-14 82.3 11.5 94 3-100 83-179 (254)
8 PF01494 FAD_binding_3: FAD bi 98.9 1.3E-08 2.8E-13 75.5 8.7 77 10-98 103-179 (356)
9 PF01266 DAO: FAD dependent ox 98.8 3.2E-08 7E-13 73.4 9.0 67 10-93 139-205 (358)
10 TIGR02032 GG-red-SF geranylger 98.8 3.7E-08 8E-13 71.9 9.0 72 10-97 83-154 (295)
11 TIGR02023 BchP-ChlP geranylger 98.8 5.1E-08 1.1E-12 75.6 9.2 73 14-97 88-161 (388)
12 TIGR02028 ChlP geranylgeranyl 98.8 6.8E-08 1.5E-12 75.7 9.5 77 13-97 88-166 (398)
13 TIGR01984 UbiH 2-polyprenyl-6- 98.7 8E-08 1.7E-12 73.5 9.1 69 12-97 99-168 (382)
14 PLN00093 geranylgeranyl diphos 98.7 8.5E-08 1.8E-12 76.8 9.5 76 14-97 128-205 (450)
15 PRK08013 oxidoreductase; Provi 98.7 8.5E-08 1.8E-12 74.7 9.1 70 12-98 105-175 (400)
16 PRK06617 2-octaprenyl-6-methox 98.7 9.5E-08 2.1E-12 73.8 9.1 68 12-97 98-166 (374)
17 TIGR01988 Ubi-OHases Ubiquinon 98.7 1.3E-07 2.9E-12 71.9 9.5 71 11-98 99-170 (385)
18 PRK08773 2-octaprenyl-3-methyl 98.7 1.5E-07 3.4E-12 72.6 9.6 69 12-97 107-175 (392)
19 PRK08020 ubiF 2-octaprenyl-3-m 98.7 1.8E-07 3.9E-12 72.0 9.2 70 11-97 105-175 (391)
20 PRK07333 2-octaprenyl-6-methox 98.7 2.3E-07 4.9E-12 71.5 9.5 69 12-97 105-173 (403)
21 PRK05714 2-octaprenyl-3-methyl 98.6 2.2E-07 4.8E-12 72.0 9.2 69 12-97 106-174 (405)
22 PF01946 Thi4: Thi4 family; PD 98.6 1.1E-07 2.5E-12 70.7 6.7 93 4-100 80-174 (230)
23 PRK06185 hypothetical protein; 98.6 4.1E-07 8.9E-12 70.4 9.7 73 12-97 102-175 (407)
24 PRK07045 putative monooxygenas 98.6 3.7E-07 8E-12 70.4 9.0 70 13-97 101-171 (388)
25 COG0654 UbiH 2-polyprenyl-6-me 98.6 4.3E-07 9.3E-12 70.6 9.0 72 10-98 96-169 (387)
26 PLN02985 squalene monooxygenas 98.6 4.3E-07 9.3E-12 73.9 9.2 74 12-98 141-215 (514)
27 PRK07608 ubiquinone biosynthes 98.5 7.9E-07 1.7E-11 68.2 9.4 69 11-97 104-173 (388)
28 TIGR02352 thiamin_ThiO glycine 98.5 4.5E-07 9.7E-12 67.7 7.7 64 13-93 132-195 (337)
29 TIGR01989 COQ6 Ubiquinone bios 98.5 7E-07 1.5E-11 70.5 9.1 72 12-98 111-190 (437)
30 PRK07538 hypothetical protein; 98.5 7.5E-07 1.6E-11 69.6 9.1 74 12-97 96-171 (413)
31 TIGR01813 flavo_cyto_c flavocy 98.5 6.9E-07 1.5E-11 70.2 8.8 71 18-100 130-200 (439)
32 PF00890 FAD_binding_2: FAD bi 98.5 5.3E-07 1.1E-11 70.1 7.5 66 16-92 139-204 (417)
33 PRK11445 putative oxidoreducta 98.5 8.4E-07 1.8E-11 68.2 8.2 71 12-97 93-163 (351)
34 PRK08850 2-octaprenyl-6-methox 98.5 1.4E-06 3E-11 67.8 9.3 70 12-98 105-175 (405)
35 PRK08244 hypothetical protein; 98.5 1.2E-06 2.5E-11 70.1 9.0 72 12-97 94-165 (493)
36 PRK05732 2-octaprenyl-6-methox 98.5 1.5E-06 3.3E-11 66.6 9.3 69 12-97 106-175 (395)
37 PRK08163 salicylate hydroxylas 98.4 1.5E-06 3.2E-11 67.0 8.8 69 12-97 103-172 (396)
38 PRK07121 hypothetical protein; 98.4 1.6E-06 3.4E-11 69.6 8.9 64 18-93 177-241 (492)
39 PRK07588 hypothetical protein; 98.4 1.4E-06 3E-11 67.3 8.2 68 12-97 97-164 (391)
40 PRK06847 hypothetical protein; 98.4 1.8E-06 3.8E-11 66.0 8.6 69 12-97 101-169 (375)
41 PRK08849 2-octaprenyl-3-methyl 98.4 2.1E-06 4.6E-11 66.4 9.0 69 12-97 104-173 (384)
42 PRK09126 hypothetical protein; 98.4 2.7E-06 5.8E-11 65.4 9.4 69 12-97 104-173 (392)
43 PRK06184 hypothetical protein; 98.4 1.6E-06 3.5E-11 69.5 8.5 73 12-98 103-175 (502)
44 PRK07190 hypothetical protein; 98.4 1.7E-06 3.8E-11 69.8 8.6 70 12-98 103-172 (487)
45 PRK08274 tricarballylate dehyd 98.4 3.3E-06 7.2E-11 67.0 9.5 69 18-98 131-199 (466)
46 PLN02661 Putative thiazole syn 98.4 5.7E-06 1.2E-10 65.3 10.6 93 3-97 155-250 (357)
47 PRK07364 2-octaprenyl-6-methox 98.4 2.7E-06 5.8E-11 65.9 8.7 73 12-98 115-188 (415)
48 PRK07494 2-octaprenyl-6-methox 98.4 3E-06 6.5E-11 65.2 8.7 69 12-97 105-173 (388)
49 PRK12839 hypothetical protein; 98.3 4.6E-06 9.9E-11 68.7 10.0 72 12-95 208-280 (572)
50 PRK06126 hypothetical protein; 98.3 3.1E-06 6.7E-11 68.4 8.5 75 12-98 120-195 (545)
51 PRK06996 hypothetical protein; 98.3 4.6E-06 1E-10 64.9 9.1 72 11-96 108-180 (398)
52 PRK06834 hypothetical protein; 98.3 3.1E-06 6.8E-11 68.3 8.4 71 11-98 93-163 (488)
53 PRK05675 sdhA succinate dehydr 98.3 3E-06 6.5E-11 69.7 8.3 66 18-93 126-191 (570)
54 PRK12845 3-ketosteroid-delta-1 98.3 3.9E-06 8.4E-11 69.1 8.7 68 19-100 218-286 (564)
55 PRK12835 3-ketosteroid-delta-1 98.3 3.8E-06 8.3E-11 69.3 8.7 64 20-95 215-279 (584)
56 PRK05868 hypothetical protein; 98.3 5.3E-06 1.2E-10 64.4 9.1 68 12-97 99-166 (372)
57 PRK08243 4-hydroxybenzoate 3-m 98.3 4.3E-06 9.3E-11 64.9 8.5 74 12-98 97-170 (392)
58 PRK12844 3-ketosteroid-delta-1 98.3 4.9E-06 1.1E-10 68.2 8.9 63 18-93 208-271 (557)
59 TIGR03377 glycerol3P_GlpA glyc 98.3 5.4E-06 1.2E-10 66.9 9.0 69 14-93 124-192 (516)
60 PRK06475 salicylate hydroxylas 98.3 5.2E-06 1.1E-10 64.6 8.3 71 13-97 102-173 (400)
61 PRK06753 hypothetical protein; 98.3 3.3E-06 7.1E-11 64.5 6.8 69 11-98 91-159 (373)
62 PRK06134 putative FAD-binding 98.2 8E-06 1.7E-10 67.2 9.3 66 18-96 217-283 (581)
63 TIGR01816 sdhA_forward succina 98.2 5.9E-06 1.3E-10 67.8 8.4 65 18-93 119-183 (565)
64 PTZ00139 Succinate dehydrogena 98.2 5.3E-06 1.2E-10 68.9 8.2 66 18-93 166-231 (617)
65 COG1635 THI4 Ribulose 1,5-bisp 98.2 1.4E-05 3.1E-10 60.1 9.7 94 3-100 92-187 (262)
66 PRK12843 putative FAD-binding 98.2 6.7E-06 1.5E-10 67.6 8.7 69 18-100 221-290 (578)
67 PRK11101 glpA sn-glycerol-3-ph 98.2 7E-06 1.5E-10 67.1 8.6 69 14-93 145-213 (546)
68 TIGR02485 CobZ_N-term precorri 98.2 9.7E-06 2.1E-10 63.9 9.1 66 18-97 123-189 (432)
69 PRK06481 fumarate reductase fl 98.2 9.8E-06 2.1E-10 65.6 8.9 64 19-94 191-254 (506)
70 PRK06183 mhpA 3-(3-hydroxyphen 98.2 6.3E-06 1.4E-10 66.8 7.6 74 12-98 107-181 (538)
71 PRK00711 D-amino acid dehydrog 98.2 9.9E-06 2.1E-10 62.7 8.1 61 15-92 198-258 (416)
72 PF12831 FAD_oxidored: FAD dep 98.2 3.5E-07 7.5E-12 72.5 0.0 71 13-97 85-155 (428)
73 TIGR01373 soxB sarcosine oxida 98.2 1.4E-05 2.9E-10 62.1 8.8 63 15-93 180-242 (407)
74 PRK08958 sdhA succinate dehydr 98.2 9.5E-06 2.1E-10 67.0 8.3 66 18-93 143-208 (588)
75 PRK09078 sdhA succinate dehydr 98.2 9E-06 2E-10 67.2 8.0 65 19-93 150-214 (598)
76 PRK08275 putative oxidoreducta 98.2 1.2E-05 2.6E-10 65.8 8.6 65 19-93 138-202 (554)
77 TIGR01812 sdhA_frdA_Gneg succi 98.2 1.2E-05 2.7E-10 65.6 8.5 64 19-93 130-193 (566)
78 PLN00128 Succinate dehydrogena 98.1 9.7E-06 2.1E-10 67.7 8.0 66 18-93 187-252 (635)
79 PLN02464 glycerol-3-phosphate 98.1 1.8E-05 3.9E-10 65.9 9.4 70 15-94 229-299 (627)
80 PF01134 GIDA: Glucose inhibit 98.1 1.6E-05 3.5E-10 63.4 8.7 61 12-89 89-150 (392)
81 PRK07057 sdhA succinate dehydr 98.1 1.2E-05 2.7E-10 66.4 8.3 66 18-93 148-213 (591)
82 TIGR02730 carot_isom carotene 98.1 1.1E-05 2.4E-10 64.6 7.8 61 18-94 229-289 (493)
83 PLN02697 lycopene epsilon cycl 98.1 1.4E-05 3.1E-10 65.6 8.3 62 14-92 188-249 (529)
84 TIGR03378 glycerol3P_GlpB glyc 98.1 1.4E-05 3.1E-10 64.1 7.9 66 18-97 263-330 (419)
85 PRK06452 sdhA succinate dehydr 98.1 1.6E-05 3.5E-10 65.3 8.3 64 19-93 137-200 (566)
86 TIGR01790 carotene-cycl lycope 98.1 2.4E-05 5.2E-10 60.2 8.8 65 12-93 79-143 (388)
87 PRK12842 putative succinate de 98.1 3.3E-05 7.1E-10 63.4 9.7 70 15-97 211-281 (574)
88 PRK08205 sdhA succinate dehydr 98.1 2E-05 4.3E-10 64.9 8.3 66 18-93 140-208 (583)
89 COG0578 GlpA Glycerol-3-phosph 98.1 1.4E-05 3.1E-10 65.9 7.3 71 13-95 159-229 (532)
90 PRK08132 FAD-dependent oxidore 98.1 2.2E-05 4.7E-10 63.7 8.4 72 13-98 120-192 (547)
91 PRK12834 putative FAD-binding 98.1 2.4E-05 5.3E-10 63.8 8.5 77 19-96 149-232 (549)
92 PRK07573 sdhA succinate dehydr 98.0 2.3E-05 5.1E-10 65.4 8.4 61 22-93 174-234 (640)
93 PRK12837 3-ketosteroid-delta-1 98.0 3.3E-05 7.1E-10 62.6 8.6 67 21-101 176-244 (513)
94 TIGR01377 soxA_mon sarcosine o 98.0 4.5E-05 9.7E-10 58.2 8.9 63 12-92 139-201 (380)
95 PRK05945 sdhA succinate dehydr 98.0 3.2E-05 6.9E-10 63.6 8.4 65 18-93 135-199 (575)
96 PTZ00383 malate:quinone oxidor 98.0 3.5E-05 7.5E-10 62.9 8.4 68 12-96 205-279 (497)
97 PRK08626 fumarate reductase fl 98.0 2.6E-05 5.6E-10 65.4 7.7 64 19-93 159-222 (657)
98 TIGR03197 MnmC_Cterm tRNA U-34 98.0 1.8E-05 4E-10 61.1 6.3 63 13-93 130-192 (381)
99 PRK07804 L-aspartate oxidase; 98.0 3.7E-05 8E-10 62.8 8.3 69 18-93 144-212 (541)
100 PRK08294 phenol 2-monooxygenas 98.0 6.9E-05 1.5E-09 62.5 10.0 80 11-97 134-216 (634)
101 TIGR01811 sdhA_Bsu succinate d 98.0 3.6E-05 7.7E-10 63.9 8.3 65 19-93 130-198 (603)
102 PLN02463 lycopene beta cyclase 98.0 4.6E-05 1E-09 61.3 8.7 65 12-94 108-172 (447)
103 PRK06263 sdhA succinate dehydr 98.0 3.6E-05 7.7E-10 62.8 7.9 65 19-93 135-199 (543)
104 PRK11728 hydroxyglutarate oxid 98.0 6.7E-05 1.5E-09 58.2 9.1 63 12-92 143-205 (393)
105 PTZ00367 squalene epoxidase; P 97.9 6E-05 1.3E-09 62.4 8.9 87 11-98 124-226 (567)
106 PRK13369 glycerol-3-phosphate 97.9 6.3E-05 1.4E-09 60.7 8.7 66 15-93 152-217 (502)
107 PRK07843 3-ketosteroid-delta-1 97.9 6.4E-05 1.4E-09 61.7 8.7 63 19-94 209-272 (557)
108 TIGR02360 pbenz_hydroxyl 4-hyd 97.9 6.1E-05 1.3E-09 58.8 8.2 71 14-97 99-169 (390)
109 TIGR03329 Phn_aa_oxid putative 97.9 6.4E-05 1.4E-09 59.9 8.1 61 13-92 178-238 (460)
110 PRK06854 adenylylsulfate reduc 97.9 6.6E-05 1.4E-09 62.3 8.4 66 17-93 131-197 (608)
111 PLN02927 antheraxanthin epoxid 97.9 8.6E-05 1.9E-09 62.7 8.8 66 12-97 188-254 (668)
112 TIGR03219 salicylate_mono sali 97.9 4.9E-05 1.1E-09 59.3 6.9 68 12-98 99-166 (414)
113 PTZ00306 NADH-dependent fumara 97.9 7.3E-05 1.6E-09 66.2 8.7 75 19-101 545-632 (1167)
114 PF03486 HI0933_like: HI0933-l 97.9 7.4E-05 1.6E-09 59.6 7.9 59 17-91 108-166 (409)
115 TIGR00551 nadB L-aspartate oxi 97.8 7E-05 1.5E-09 60.3 7.5 63 18-93 128-191 (488)
116 TIGR02734 crtI_fam phytoene de 97.8 7.9E-05 1.7E-09 59.6 7.7 60 18-93 219-278 (502)
117 PRK06175 L-aspartate oxidase; 97.8 8.6E-05 1.9E-09 59.1 7.8 62 19-93 129-191 (433)
118 PRK12266 glpD glycerol-3-phosp 97.8 0.00011 2.4E-09 59.6 8.4 67 15-93 152-218 (508)
119 PF13738 Pyr_redox_3: Pyridine 97.8 0.00014 3E-09 50.8 7.9 61 14-91 78-138 (203)
120 PRK07236 hypothetical protein; 97.8 0.0001 2.2E-09 57.0 7.6 65 14-97 96-160 (386)
121 PRK09231 fumarate reductase fl 97.8 0.00011 2.4E-09 60.7 8.1 64 19-93 134-198 (582)
122 PRK08401 L-aspartate oxidase; 97.8 0.00011 2.4E-09 58.9 7.8 59 18-94 120-178 (466)
123 TIGR01176 fum_red_Fp fumarate 97.8 0.00013 2.8E-09 60.3 8.4 65 18-93 132-197 (580)
124 TIGR01320 mal_quin_oxido malat 97.8 0.00022 4.9E-09 57.7 9.5 72 11-93 171-242 (483)
125 PRK11259 solA N-methyltryptoph 97.8 0.00022 4.7E-09 54.4 9.0 63 11-92 143-205 (376)
126 PRK08071 L-aspartate oxidase; 97.8 9E-05 1.9E-09 60.2 7.2 62 19-93 131-192 (510)
127 PRK08641 sdhA succinate dehydr 97.7 0.00014 3E-09 60.1 8.0 65 19-93 134-202 (589)
128 PRK06069 sdhA succinate dehydr 97.7 0.00015 3.2E-09 59.6 7.9 64 19-93 138-202 (577)
129 PRK05192 tRNA uridine 5-carbox 97.7 0.00013 2.8E-09 61.2 7.6 61 14-91 96-157 (618)
130 TIGR00136 gidA glucose-inhibit 97.7 0.00014 3E-09 61.0 7.4 62 14-91 92-154 (617)
131 PRK07512 L-aspartate oxidase; 97.7 0.00012 2.7E-09 59.4 7.0 62 19-93 137-199 (513)
132 PRK12409 D-amino acid dehydrog 97.7 0.00022 4.7E-09 55.4 7.9 65 16-92 195-259 (410)
133 PLN02815 L-aspartate oxidase 97.6 0.00019 4.1E-09 59.7 7.3 65 19-93 156-224 (594)
134 COG0579 Predicted dehydrogenas 97.6 0.0003 6.4E-09 56.8 8.2 67 10-92 145-212 (429)
135 PRK07803 sdhA succinate dehydr 97.6 0.00027 5.8E-09 58.9 8.0 65 18-93 138-215 (626)
136 PRK01747 mnmC bifunctional tRN 97.6 0.00021 4.6E-09 59.5 7.4 60 15-92 405-464 (662)
137 PRK09077 L-aspartate oxidase; 97.6 0.00024 5.3E-09 58.0 7.5 66 18-93 138-209 (536)
138 COG2509 Uncharacterized FAD-de 97.6 0.00041 8.8E-09 56.6 8.4 60 18-93 173-232 (486)
139 TIGR02061 aprA adenosine phosp 97.6 0.00036 7.7E-09 58.4 8.3 65 19-93 127-193 (614)
140 PF05834 Lycopene_cycl: Lycope 97.6 0.00041 9E-09 54.0 8.1 66 11-94 80-145 (374)
141 TIGR02731 phytoene_desat phyto 97.6 0.00043 9.4E-09 54.6 8.1 63 18-90 213-275 (453)
142 TIGR03364 HpnW_proposed FAD de 97.5 0.00042 9E-09 52.9 7.4 58 13-92 140-198 (365)
143 PF00732 GMC_oxred_N: GMC oxid 97.5 0.00024 5.2E-09 52.8 5.7 62 20-90 194-257 (296)
144 KOG2844|consensus 97.5 0.00017 3.6E-09 61.4 5.3 67 14-97 183-249 (856)
145 KOG2820|consensus 97.5 0.00055 1.2E-08 54.3 7.6 67 9-91 145-212 (399)
146 PRK07395 L-aspartate oxidase; 97.5 0.00035 7.6E-09 57.5 6.8 63 19-93 135-199 (553)
147 COG2081 Predicted flavoprotein 97.5 0.00063 1.4E-08 54.6 7.8 56 18-90 111-166 (408)
148 PRK08255 salicylyl-CoA 5-hydro 97.4 0.00017 3.6E-09 61.4 4.5 57 14-99 93-149 (765)
149 PRK05257 malate:quinone oxidor 97.4 0.0013 2.9E-08 53.5 9.2 73 11-94 176-249 (494)
150 COG1233 Phytoene dehydrogenase 97.4 0.00069 1.5E-08 54.8 7.1 58 16-89 222-279 (487)
151 PLN02612 phytoene desaturase 97.4 0.00099 2.1E-08 54.9 8.1 56 19-89 309-364 (567)
152 KOG4254|consensus 97.4 0.00035 7.6E-09 57.3 5.1 62 16-93 262-323 (561)
153 TIGR02733 desat_CrtD C-3',4' d 97.3 0.0012 2.5E-08 52.8 8.1 63 17-90 231-293 (492)
154 PRK13977 myosin-cross-reactive 97.3 0.0011 2.3E-08 55.4 8.0 77 4-93 216-295 (576)
155 COG0665 DadA Glycine/D-amino a 97.3 0.00087 1.9E-08 51.1 6.9 63 13-93 151-214 (387)
156 KOG1298|consensus 97.3 0.00052 1.1E-08 55.5 5.8 75 12-99 141-216 (509)
157 PTZ00363 rab-GDP dissociation 97.3 0.0019 4.2E-08 52.1 8.4 60 17-91 231-290 (443)
158 TIGR01810 betA choline dehydro 97.1 0.0012 2.6E-08 53.6 6.2 61 17-89 192-253 (532)
159 TIGR00275 flavoprotein, HI0933 97.1 0.0033 7.1E-08 49.5 8.1 57 17-91 104-160 (400)
160 TIGR03862 flavo_PP4765 unchara 97.1 0.0034 7.3E-08 49.9 8.1 57 17-91 85-141 (376)
161 PRK13339 malate:quinone oxidor 97.1 0.0038 8.3E-08 51.1 8.5 72 11-93 177-249 (497)
162 PRK13800 putative oxidoreducta 97.0 0.0036 7.7E-08 54.2 7.8 63 20-93 141-207 (897)
163 PRK05329 anaerobic glycerol-3- 96.8 0.0088 1.9E-07 48.1 8.5 58 19-90 260-317 (422)
164 PRK07233 hypothetical protein; 96.8 0.0065 1.4E-07 46.9 7.3 56 18-90 198-253 (434)
165 COG0445 GidA Flavin-dependent 96.8 0.002 4.3E-08 53.9 4.3 63 12-90 89-157 (621)
166 TIGR02732 zeta_caro_desat caro 96.7 0.008 1.7E-07 48.4 7.7 60 19-90 220-283 (474)
167 PRK02106 choline dehydrogenase 96.6 0.0045 9.7E-08 50.7 5.6 63 17-91 199-262 (560)
168 KOG0042|consensus 96.5 0.0026 5.7E-08 53.2 3.3 72 18-99 224-295 (680)
169 PRK12769 putative oxidoreducta 96.5 0.016 3.6E-07 48.4 8.0 70 23-92 511-585 (654)
170 PF01593 Amino_oxidase: Flavin 96.4 0.012 2.6E-07 43.9 6.4 62 11-89 202-263 (450)
171 PRK07208 hypothetical protein; 96.4 0.022 4.7E-07 45.2 8.0 62 18-90 218-279 (479)
172 PF06039 Mqo: Malate:quinone o 96.4 0.02 4.2E-07 47.1 7.8 72 11-93 174-246 (488)
173 KOG1336|consensus 96.4 0.012 2.6E-07 48.2 6.6 59 19-92 256-314 (478)
174 PRK15317 alkyl hydroperoxide r 96.4 0.024 5.1E-07 46.1 8.3 59 16-91 264-322 (517)
175 PRK09564 coenzyme A disulfide 96.3 0.024 5.3E-07 44.5 8.0 57 18-92 191-247 (444)
176 TIGR02462 pyranose_ox pyranose 96.3 0.011 2.5E-07 49.0 6.3 61 20-90 216-278 (544)
177 TIGR01292 TRX_reduct thioredox 96.3 0.026 5.6E-07 41.3 7.5 58 17-92 56-113 (300)
178 PLN02487 zeta-carotene desatur 96.3 0.02 4.3E-07 47.7 7.5 59 20-90 297-359 (569)
179 KOG2852|consensus 96.3 0.013 2.8E-07 46.1 5.9 68 12-92 141-209 (380)
180 TIGR03467 HpnE squalene-associ 96.2 0.02 4.2E-07 43.9 6.8 54 20-89 199-252 (419)
181 PRK06116 glutathione reductase 96.2 0.038 8.3E-07 43.7 8.6 59 19-93 209-267 (450)
182 PRK12810 gltD glutamate syntha 96.2 0.034 7.3E-07 44.7 8.0 66 24-91 335-400 (471)
183 PRK04965 NADH:flavorubredoxin 96.1 0.038 8.2E-07 42.7 8.0 56 20-92 185-240 (377)
184 COG0029 NadB Aspartate oxidase 96.1 0.016 3.4E-07 47.9 5.8 79 3-93 99-198 (518)
185 TIGR01789 lycopene_cycl lycope 96.0 0.025 5.5E-07 44.2 6.7 58 11-92 82-139 (370)
186 TIGR01350 lipoamide_DH dihydro 96.0 0.054 1.2E-06 42.9 8.3 61 18-93 211-271 (461)
187 TIGR03140 AhpF alkyl hydropero 95.9 0.053 1.1E-06 44.1 8.1 59 16-91 265-323 (515)
188 PRK09754 phenylpropionate diox 95.8 0.055 1.2E-06 42.2 7.7 56 19-92 187-242 (396)
189 KOG2404|consensus 95.8 0.035 7.6E-07 44.5 6.4 57 33-101 160-216 (477)
190 TIGR02374 nitri_red_nirB nitri 95.8 0.049 1.1E-06 46.7 7.8 56 20-92 184-239 (785)
191 PRK14989 nitrite reductase sub 95.8 0.058 1.3E-06 46.9 8.3 58 21-93 190-247 (847)
192 PRK12809 putative oxidoreducta 95.8 0.054 1.2E-06 45.3 7.9 68 24-91 495-567 (639)
193 PRK05249 soluble pyridine nucl 95.7 0.084 1.8E-06 41.8 8.2 58 19-93 217-274 (461)
194 TIGR01318 gltD_gamma_fam gluta 95.6 0.085 1.8E-06 42.5 8.2 70 23-92 325-399 (467)
195 COG1053 SdhA Succinate dehydro 95.6 0.021 4.6E-07 47.5 4.9 65 19-93 139-204 (562)
196 TIGR01316 gltA glutamate synth 95.6 0.066 1.4E-06 42.8 7.4 70 23-92 314-388 (449)
197 PF13434 K_oxygenase: L-lysine 95.5 0.037 8.1E-07 43.1 5.7 72 12-94 89-162 (341)
198 PRK05976 dihydrolipoamide dehy 95.5 0.12 2.7E-06 41.2 8.8 62 19-93 222-283 (472)
199 PRK12831 putative oxidoreducta 95.5 0.069 1.5E-06 43.0 7.3 68 25-92 325-397 (464)
200 PF00070 Pyr_redox: Pyridine n 95.3 0.075 1.6E-06 32.4 5.5 39 19-59 41-79 (80)
201 TIGR01423 trypano_reduc trypan 95.2 0.15 3.3E-06 41.4 8.5 59 19-93 232-290 (486)
202 KOG1346|consensus 95.2 0.03 6.5E-07 46.2 4.3 57 18-91 393-449 (659)
203 PRK08010 pyridine nucleotide-d 95.2 0.15 3.1E-06 40.4 8.1 57 19-93 200-256 (441)
204 PRK14727 putative mercuric red 95.2 0.14 3E-06 41.2 8.0 57 19-93 229-285 (479)
205 TIGR01292 TRX_reduct thioredox 95.1 0.14 3E-06 37.4 7.4 61 21-93 179-240 (300)
206 PRK06416 dihydrolipoamide dehy 95.1 0.19 4.1E-06 39.9 8.6 61 19-93 214-274 (462)
207 KOG0404|consensus 95.1 0.019 4.2E-07 43.9 2.8 55 18-91 70-124 (322)
208 TIGR03143 AhpF_homolog putativ 95.1 0.11 2.5E-06 42.6 7.5 58 16-92 58-115 (555)
209 PRK14694 putative mercuric red 95.1 0.16 3.4E-06 40.7 8.1 58 18-93 218-275 (468)
210 PLN02172 flavin-containing mon 95.0 0.15 3.2E-06 41.3 7.9 63 15-90 108-172 (461)
211 PLN02785 Protein HOTHEAD 95.0 0.085 1.9E-06 44.0 6.6 63 17-91 220-290 (587)
212 PRK07845 flavoprotein disulfid 94.9 0.2 4.4E-06 40.1 8.3 57 20-93 220-276 (466)
213 COG1252 Ndh NADH dehydrogenase 94.9 0.096 2.1E-06 42.2 6.3 56 21-97 212-269 (405)
214 TIGR03169 Nterm_to_SelD pyridi 94.8 0.16 3.4E-06 38.9 7.2 53 19-92 192-244 (364)
215 PLN02507 glutathione reductase 94.8 0.23 4.9E-06 40.4 8.4 57 20-93 246-302 (499)
216 PRK06370 mercuric reductase; V 94.8 0.22 4.8E-06 39.6 8.2 61 19-93 213-273 (463)
217 TIGR01424 gluta_reduc_2 glutat 94.8 0.21 4.5E-06 39.7 8.0 57 20-93 209-265 (446)
218 TIGR03385 CoA_CoA_reduc CoA-di 94.8 0.16 3.6E-06 39.8 7.4 55 19-92 180-234 (427)
219 TIGR01421 gluta_reduc_1 glutat 94.7 0.3 6.6E-06 39.0 8.8 58 20-93 209-267 (450)
220 PRK07251 pyridine nucleotide-d 94.7 0.26 5.6E-06 38.9 8.3 57 19-93 199-255 (438)
221 PRK06567 putative bifunctional 94.7 0.14 3E-06 45.6 7.2 68 23-90 645-727 (1028)
222 PRK13748 putative mercuric red 94.5 0.24 5.2E-06 40.3 7.9 57 19-93 311-367 (561)
223 PTZ00318 NADH dehydrogenase-li 94.4 0.2 4.3E-06 39.6 7.0 52 19-91 229-280 (424)
224 TIGR02053 MerA mercuric reduct 94.4 0.38 8.3E-06 38.2 8.6 60 20-93 209-268 (463)
225 PRK07818 dihydrolipoamide dehy 94.3 0.34 7.4E-06 38.7 8.3 62 19-93 214-275 (466)
226 PRK12778 putative bifunctional 94.3 0.24 5.2E-06 42.1 7.8 68 25-92 615-687 (752)
227 PRK10262 thioredoxin reductase 94.2 0.28 6.1E-06 37.0 7.3 64 20-93 187-250 (321)
228 PRK11749 dihydropyrimidine deh 94.2 0.25 5.5E-06 39.4 7.4 69 23-92 316-388 (457)
229 PRK06115 dihydrolipoamide dehy 94.2 0.38 8.2E-06 38.6 8.3 62 19-92 216-277 (466)
230 TIGR03140 AhpF alkyl hydropero 94.2 0.32 6.9E-06 39.6 7.9 61 21-92 390-451 (515)
231 KOG2853|consensus 94.0 0.2 4.4E-06 40.5 6.3 66 16-93 241-322 (509)
232 PRK09897 hypothetical protein; 93.9 0.32 7E-06 40.3 7.6 51 24-90 113-165 (534)
233 COG0492 TrxB Thioredoxin reduc 93.8 0.32 6.9E-06 37.6 7.0 60 16-94 59-118 (305)
234 PRK12771 putative glutamate sy 93.6 0.39 8.4E-06 39.5 7.5 67 24-91 311-380 (564)
235 PRK06327 dihydrolipoamide dehy 93.6 0.63 1.4E-05 37.3 8.6 62 19-93 225-286 (475)
236 PF00996 GDI: GDP dissociation 93.5 0.57 1.2E-05 38.1 8.2 54 17-86 231-284 (438)
237 PRK12775 putative trifunctiona 93.5 0.41 9E-06 42.4 7.9 67 25-92 616-687 (1006)
238 PRK13984 putative oxidoreducta 93.3 0.35 7.6E-06 39.9 6.9 67 25-92 469-539 (604)
239 COG3075 GlpB Anaerobic glycero 93.3 0.2 4.4E-06 40.1 5.2 56 20-89 260-315 (421)
240 PRK06912 acoL dihydrolipoamide 93.3 0.64 1.4E-05 37.1 8.2 59 19-93 212-270 (458)
241 PTZ00052 thioredoxin reductase 93.3 0.64 1.4E-05 37.8 8.3 57 20-93 224-280 (499)
242 KOG2614|consensus 93.2 0.14 3E-06 41.5 4.3 26 75-100 147-172 (420)
243 PRK12416 protoporphyrinogen ox 93.0 0.4 8.6E-06 38.0 6.6 52 17-87 225-276 (463)
244 PTZ00058 glutathione reductase 93.0 0.73 1.6E-05 38.3 8.4 59 20-93 280-338 (561)
245 PLN02676 polyamine oxidase 93.0 0.41 8.9E-06 38.9 6.7 54 18-88 224-283 (487)
246 PF07992 Pyr_redox_2: Pyridine 93.0 0.14 3.1E-06 35.3 3.6 55 25-92 65-123 (201)
247 PF13454 NAD_binding_9: FAD-NA 92.9 0.66 1.4E-05 31.8 6.9 61 12-89 88-155 (156)
248 PF13434 K_oxygenase: L-lysine 92.9 0.7 1.5E-05 36.0 7.6 47 32-89 293-339 (341)
249 PRK15317 alkyl hydroperoxide r 92.8 0.6 1.3E-05 38.0 7.5 61 21-92 389-450 (517)
250 PRK07845 flavoprotein disulfid 92.7 0.69 1.5E-05 37.1 7.6 55 22-92 96-152 (466)
251 TIGR01438 TGR thioredoxin and 92.5 0.94 2E-05 36.7 8.1 60 20-93 222-281 (484)
252 PRK04965 NADH:flavorubredoxin 92.5 0.49 1.1E-05 36.5 6.3 47 26-92 66-112 (377)
253 KOG2311|consensus 92.2 0.37 8.1E-06 40.4 5.5 58 16-89 117-184 (679)
254 COG1249 Lpd Pyruvate/2-oxoglut 92.1 0.95 2.1E-05 36.9 7.7 60 19-93 215-274 (454)
255 TIGR01372 soxA sarcosine oxida 92.0 0.86 1.9E-05 40.2 7.8 64 17-93 350-413 (985)
256 PF00743 FMO-like: Flavin-bind 91.8 1.3 2.8E-05 36.6 8.4 76 4-91 70-150 (531)
257 PLN02546 glutathione reductase 91.7 1.4 3.1E-05 36.6 8.5 56 22-93 297-352 (558)
258 PRK13512 coenzyme A disulfide 91.6 0.92 2E-05 36.0 7.0 53 19-92 190-242 (438)
259 TIGR02374 nitri_red_nirB nitri 91.6 0.47 1E-05 40.8 5.7 49 25-92 61-109 (785)
260 COG0446 HcaD Uncharacterized N 91.5 1.3 2.9E-05 33.4 7.6 59 18-92 178-238 (415)
261 PRK09564 coenzyme A disulfide 91.4 0.56 1.2E-05 36.8 5.6 53 24-92 62-116 (444)
262 TIGR03169 Nterm_to_SelD pyridi 91.2 0.52 1.1E-05 36.0 5.1 49 24-92 60-108 (364)
263 PRK11883 protoporphyrinogen ox 91.1 2 4.3E-05 33.4 8.3 56 17-89 217-273 (451)
264 COG2303 BetA Choline dehydroge 91.1 0.69 1.5E-05 38.2 6.0 58 24-91 208-266 (542)
265 PRK09754 phenylpropionate diox 91.0 0.69 1.5E-05 36.1 5.8 45 28-91 68-112 (396)
266 COG1251 NirB NAD(P)H-nitrite r 91.0 0.28 6E-06 42.5 3.7 55 22-93 191-245 (793)
267 PRK12779 putative bifunctional 90.7 1.3 2.9E-05 39.1 7.7 67 25-92 491-563 (944)
268 PTZ00153 lipoamide dehydrogena 90.7 2.9 6.3E-05 35.6 9.4 74 20-93 355-429 (659)
269 TIGR00562 proto_IX_ox protopor 90.6 1.4 3E-05 34.7 7.1 44 29-89 233-277 (462)
270 PRK07846 mycothione reductase; 90.6 1.5 3.3E-05 35.1 7.4 49 28-93 216-264 (451)
271 COG2072 TrkA Predicted flavopr 90.4 2 4.4E-05 34.5 8.0 56 23-91 87-144 (443)
272 PRK12770 putative glutamate sy 90.3 1.8 3.9E-05 33.2 7.4 69 22-92 214-287 (352)
273 TIGR03385 CoA_CoA_reduc CoA-di 90.2 0.91 2E-05 35.6 5.8 49 28-92 54-104 (427)
274 PRK14989 nitrite reductase sub 90.2 0.78 1.7E-05 40.0 5.8 49 25-92 66-114 (847)
275 COG3573 Predicted oxidoreducta 90.1 1.3 2.7E-05 36.1 6.5 72 19-93 154-230 (552)
276 PLN02268 probable polyamine ox 90.0 1.1 2.3E-05 35.2 6.0 40 31-87 209-248 (435)
277 TIGR03452 mycothione_red mycot 90.0 1.7 3.7E-05 34.7 7.3 49 28-93 219-267 (452)
278 TIGR01424 gluta_reduc_2 glutat 89.9 1.8 3.9E-05 34.4 7.3 52 20-92 92-143 (446)
279 PRK06327 dihydrolipoamide dehy 89.7 1.8 3.9E-05 34.7 7.2 53 23-91 105-157 (475)
280 TIGR01421 gluta_reduc_1 glutat 89.7 1.5 3.2E-05 35.1 6.7 48 22-92 95-142 (450)
281 PRK12814 putative NADPH-depend 89.5 2.2 4.7E-05 36.0 7.8 67 24-91 367-437 (652)
282 PRK10262 thioredoxin reductase 88.9 3 6.4E-05 31.4 7.5 57 17-92 62-118 (321)
283 PRK06467 dihydrolipoamide dehy 88.5 2.1 4.5E-05 34.4 6.8 49 26-92 101-149 (471)
284 PRK05976 dihydrolipoamide dehy 88.0 3.3 7.1E-05 33.1 7.6 53 26-92 100-155 (472)
285 COG3486 IucD Lysine/ornithine 87.8 1.3 2.8E-05 36.2 5.1 51 31-92 291-341 (436)
286 PRK13512 coenzyme A disulfide 87.6 2.1 4.7E-05 33.9 6.3 50 29-92 69-118 (438)
287 KOG1335|consensus 87.5 4.1 8.8E-05 33.5 7.7 60 22-92 256-315 (506)
288 PRK06467 dihydrolipoamide dehy 86.9 4.6 0.0001 32.4 7.9 60 20-93 217-276 (471)
289 PRK06116 glutathione reductase 86.9 3.1 6.7E-05 32.9 6.8 46 24-92 99-144 (450)
290 TIGR01317 GOGAT_sm_gam glutama 86.5 3.6 7.8E-05 33.4 7.1 60 31-90 349-413 (485)
291 PLN02576 protoporphyrinogen ox 86.3 4.2 9.1E-05 32.4 7.3 53 19-87 240-293 (496)
292 PRK05249 soluble pyridine nucl 86.2 4 8.7E-05 32.3 7.1 52 23-92 99-150 (461)
293 PRK06292 dihydrolipoamide dehy 86.2 4.8 0.0001 31.9 7.5 59 20-93 212-270 (460)
294 PLN02507 glutathione reductase 85.9 4.6 0.0001 32.9 7.5 50 25-92 131-180 (499)
295 PLN02568 polyamine oxidase 85.6 3.4 7.4E-05 34.2 6.6 49 20-87 244-292 (539)
296 PRK06370 mercuric reductase; V 85.5 2.8 6.1E-05 33.3 6.0 48 23-93 99-147 (463)
297 PF06100 Strep_67kDa_ant: Stre 85.4 5.7 0.00012 33.1 7.8 57 24-90 213-273 (500)
298 KOG1399|consensus 85.4 5.1 0.00011 32.7 7.4 77 3-91 74-153 (448)
299 PLN02546 glutathione reductase 85.1 3.2 7E-05 34.5 6.3 50 20-92 180-229 (558)
300 COG1232 HemY Protoporphyrinoge 84.6 3.4 7.3E-05 33.8 6.1 50 20-86 214-263 (444)
301 PRK09853 putative selenate red 83.1 5.2 0.00011 36.0 7.0 67 24-92 713-780 (1019)
302 KOG3855|consensus 82.1 5.9 0.00013 32.7 6.5 69 12-95 144-221 (481)
303 COG3486 IucD Lysine/ornithine 81.2 5.8 0.00012 32.5 6.1 71 9-95 89-161 (436)
304 PRK06416 dihydrolipoamide dehy 80.5 7.8 0.00017 30.7 6.7 50 24-92 98-147 (462)
305 COG1251 NirB NAD(P)H-nitrite r 80.0 3.6 7.8E-05 35.9 4.8 50 26-94 67-116 (793)
306 PRK07251 pyridine nucleotide-d 79.5 9.5 0.00021 30.1 6.8 48 26-92 84-131 (438)
307 COG1249 Lpd Pyruvate/2-oxoglut 78.8 7.6 0.00016 31.7 6.2 49 25-93 101-149 (454)
308 PLN02529 lysine-specific histo 78.7 6.1 0.00013 34.3 5.8 37 32-86 366-402 (738)
309 PRK06115 dihydrolipoamide dehy 78.2 10 0.00022 30.4 6.7 46 28-91 103-148 (466)
310 PTZ00058 glutathione reductase 77.5 9.6 0.00021 31.8 6.5 18 75-92 198-215 (561)
311 TIGR01438 TGR thioredoxin and 77.1 11 0.00024 30.5 6.7 51 24-92 106-156 (484)
312 KOG1336|consensus 76.9 5.4 0.00012 33.1 4.8 43 28-89 137-179 (478)
313 PLN02852 ferredoxin-NADP+ redu 75.9 19 0.00041 29.7 7.8 71 20-91 268-354 (491)
314 TIGR03452 mycothione_red mycot 75.9 3.3 7.2E-05 33.1 3.3 42 30-93 104-145 (452)
315 KOG2960|consensus 74.8 16 0.00034 28.1 6.5 91 3-94 140-237 (328)
316 PRK08010 pyridine nucleotide-d 73.4 20 0.00043 28.3 7.1 16 77-92 117-132 (441)
317 COG0492 TrxB Thioredoxin reduc 73.1 13 0.00029 28.6 5.9 68 12-93 170-240 (305)
318 TIGR03315 Se_ygfK putative sel 73.0 13 0.00029 33.4 6.6 65 24-91 711-776 (1012)
319 PRK07846 mycothione reductase; 72.7 7.5 0.00016 31.1 4.6 43 28-92 99-141 (451)
320 PRK06912 acoL dihydrolipoamide 72.6 18 0.00039 28.8 6.8 17 76-92 129-145 (458)
321 TIGR01350 lipoamide_DH dihydro 72.2 19 0.00041 28.4 6.8 17 76-92 128-144 (461)
322 PTZ00318 NADH dehydrogenase-li 72.0 11 0.00024 29.7 5.4 58 24-91 68-125 (424)
323 PLN02328 lysine-specific histo 71.9 19 0.0004 31.7 7.1 48 20-87 436-483 (808)
324 TIGR01372 soxA sarcosine oxida 71.2 22 0.00047 31.6 7.5 64 23-91 220-286 (985)
325 COG1148 HdrA Heterodisulfide r 70.3 7.7 0.00017 32.8 4.2 69 13-93 406-478 (622)
326 PLN03000 amine oxidase 70.2 25 0.00055 31.3 7.5 36 34-87 392-427 (881)
327 COG3634 AhpF Alkyl hydroperoxi 69.8 11 0.00024 30.9 4.9 59 17-90 265-324 (520)
328 TIGR01423 trypano_reduc trypan 69.7 27 0.00058 28.5 7.2 51 28-92 113-164 (486)
329 TIGR02053 MerA mercuric reduct 69.7 12 0.00026 29.7 5.1 46 26-92 96-141 (463)
330 PLN02976 amine oxidase 68.7 21 0.00046 33.9 6.9 39 33-86 946-992 (1713)
331 PRK14727 putative mercuric red 68.3 17 0.00038 29.2 5.9 43 32-92 121-163 (479)
332 PRK11749 dihydropyrimidine deh 66.3 6.7 0.00014 31.3 3.1 46 19-90 191-236 (457)
333 COG0493 GltD NADPH-dependent g 65.4 3.7 7.9E-05 33.6 1.4 70 23-92 311-386 (457)
334 PTZ00052 thioredoxin reductase 65.1 8.2 0.00018 31.4 3.4 17 76-92 141-157 (499)
335 TIGR03143 AhpF_homolog putativ 64.8 40 0.00086 27.8 7.4 59 23-93 183-248 (555)
336 PRK12770 putative glutamate sy 64.3 6.6 0.00014 30.1 2.6 54 24-90 74-129 (352)
337 TIGR01318 gltD_gamma_fam gluta 62.4 9.7 0.00021 30.7 3.4 45 22-92 195-239 (467)
338 PRK14694 putative mercuric red 61.9 31 0.00067 27.6 6.1 44 31-92 110-153 (468)
339 PRK13748 putative mercuric red 61.1 32 0.00069 28.0 6.2 17 76-92 229-245 (561)
340 PRK09853 putative selenate red 58.6 24 0.00051 31.9 5.3 43 22-91 593-635 (1019)
341 COG1231 Monoamine oxidase [Ami 58.3 48 0.001 27.4 6.7 51 19-86 207-257 (450)
342 PRK12831 putative oxidoreducta 57.7 9 0.0002 30.9 2.4 47 20-90 193-239 (464)
343 KOG1439|consensus 57.6 40 0.00087 27.7 6.0 43 17-59 231-273 (440)
344 COG4529 Uncharacterized protei 55.3 56 0.0012 27.2 6.6 70 9-93 91-166 (474)
345 PRK12779 putative bifunctional 54.2 19 0.00041 32.1 4.0 50 16-91 355-404 (944)
346 KOG0685|consensus 52.3 21 0.00045 29.8 3.7 35 36-86 247-281 (498)
347 TIGR01317 GOGAT_sm_gam glutama 51.6 15 0.00032 29.9 2.7 45 20-90 195-239 (485)
348 PRK07818 dihydrolipoamide dehy 50.9 78 0.0017 25.2 6.8 17 76-92 132-148 (466)
349 KOG1335|consensus 50.2 54 0.0012 27.2 5.7 14 76-89 170-183 (506)
350 PRK12778 putative bifunctional 50.1 17 0.00037 31.1 3.0 46 20-90 483-528 (752)
351 PRK06292 dihydrolipoamide dehy 49.3 69 0.0015 25.3 6.2 16 75-90 126-141 (460)
352 KOG1238|consensus 48.7 43 0.00093 28.8 5.1 49 32-91 268-318 (623)
353 PTZ00153 lipoamide dehydrogena 48.1 74 0.0016 27.3 6.5 19 75-93 270-288 (659)
354 PF11432 DUF3197: Protein of u 47.5 23 0.00049 23.9 2.7 30 2-37 49-78 (113)
355 TIGR00137 gid_trmFO tRNA:m(5)U 46.3 86 0.0019 25.6 6.4 20 11-30 90-109 (433)
356 KOG0405|consensus 44.9 1E+02 0.0022 25.4 6.5 53 23-91 235-287 (478)
357 PRK13984 putative oxidoreducta 43.1 24 0.00053 29.2 2.8 43 22-90 337-379 (604)
358 PRK12775 putative trifunctiona 42.7 22 0.00047 31.9 2.6 23 19-41 481-503 (1006)
359 PRK12771 putative glutamate sy 41.2 23 0.00049 29.2 2.4 20 22-41 191-210 (564)
360 PF12728 HTH_17: Helix-turn-he 39.0 29 0.00063 18.9 1.9 21 6-26 29-49 (51)
361 PF07156 Prenylcys_lyase: Pren 38.0 1.3E+02 0.0029 23.8 6.2 64 11-88 119-184 (368)
362 PLN03117 Branched-chain-amino- 37.8 1E+02 0.0022 24.2 5.4 63 21-101 263-332 (355)
363 PRK04101 fosfomycin resistance 36.7 61 0.0013 21.0 3.6 26 12-38 68-93 (139)
364 PF06844 DUF1244: Protein of u 35.8 45 0.00098 20.5 2.5 21 17-37 14-34 (68)
365 KOG0405|consensus 32.3 1.4E+02 0.0031 24.6 5.5 55 21-93 113-167 (478)
366 cd09012 Glo_EDI_BRP_like_24 Th 31.8 99 0.0022 19.3 3.9 21 17-38 79-99 (124)
367 COG0810 TonB Periplasmic prote 30.8 1E+02 0.0022 22.7 4.2 32 25-59 170-201 (244)
368 COG0446 HcaD Uncharacterized N 30.8 93 0.002 23.3 4.1 45 29-93 64-108 (415)
369 KOG1346|consensus 30.5 74 0.0016 26.9 3.7 59 11-93 255-313 (659)
370 COG1252 Ndh NADH dehydrogenase 30.4 88 0.0019 25.4 4.1 49 24-92 63-112 (405)
371 KOG0029|consensus 29.3 1.3E+02 0.0029 24.9 5.0 39 32-86 228-266 (501)
372 TIGR01352 tonB_Cterm TonB fami 29.1 1.2E+02 0.0025 17.3 3.7 30 27-59 2-31 (74)
373 COG2044 Predicted peroxiredoxi 28.4 36 0.00079 23.1 1.4 36 23-58 66-102 (120)
374 PF02951 GSH-S_N: Prokaryotic 27.6 79 0.0017 21.2 2.9 33 20-54 19-51 (119)
375 cd00449 PLPDE_IV PyridoxaL 5'- 26.9 2.4E+02 0.0052 20.2 5.7 21 19-39 188-208 (256)
376 PF07282 OrfB_Zn_ribbon: Putat 26.6 93 0.002 18.1 2.8 20 18-37 2-21 (69)
377 COG3492 Uncharacterized protei 25.5 61 0.0013 21.3 1.9 20 17-36 45-64 (104)
378 PF09894 DUF2121: Uncharacteri 24.4 1.4E+02 0.0029 22.1 3.8 33 21-54 46-78 (194)
379 PF07338 DUF1471: Protein of u 24.0 88 0.0019 18.1 2.3 22 16-37 16-37 (56)
380 PF10049 DUF2283: Protein of u 23.6 1E+02 0.0022 17.2 2.5 14 45-58 34-47 (50)
381 PRK09897 hypothetical protein; 23.0 2.1E+02 0.0045 23.9 5.1 17 77-93 433-449 (534)
382 PF03544 TonB_C: Gram-negative 22.8 1E+02 0.0022 17.8 2.5 30 27-59 8-37 (79)
383 PLN02782 Branched-chain amino 22.7 2.1E+02 0.0046 23.0 5.0 64 19-101 312-384 (403)
384 cd08344 MhqB_like_N N-terminal 22.7 1.5E+02 0.0033 18.1 3.5 26 12-38 60-85 (112)
385 PRK06724 hypothetical protein; 21.7 1E+02 0.0022 20.2 2.5 24 14-38 71-94 (128)
386 KOG2495|consensus 21.6 4.9E+02 0.011 21.9 7.2 64 19-99 270-338 (491)
387 PF01906 YbjQ_1: Putative heav 21.5 2.3E+02 0.005 18.1 5.1 27 17-43 58-84 (105)
388 COG2907 Predicted NAD/FAD-bind 21.5 1.8E+02 0.0038 24.0 4.2 52 25-93 224-275 (447)
389 PF14542 Acetyltransf_CG: GCN5 21.2 1.5E+02 0.0033 17.9 3.1 23 18-40 41-63 (78)
390 KOG2355|consensus 20.9 70 0.0015 24.6 1.8 28 14-41 180-207 (291)
391 cd08357 Glo_EDI_BRP_like_18 Th 20.9 2.1E+02 0.0046 17.4 6.7 26 12-38 70-95 (125)
392 PRK10819 transport protein Ton 20.4 1.9E+02 0.004 21.7 4.0 32 25-59 171-202 (246)
393 PF03738 GSP_synth: Glutathion 20.1 1.2E+02 0.0027 19.0 2.6 31 21-52 17-47 (97)
No 1
>KOG2415|consensus
Probab=99.88 E-value=2.1e-22 Score=160.79 Aligned_cols=97 Identities=74% Similarity=1.276 Sum_probs=95.4
Q ss_pred CCCCCCCcEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEE
Q psy9487 5 MPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTI 84 (101)
Q Consensus 5 ~~~~~~~~~~v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI 84 (101)
.||+|+|.|+++..++.+||.++|+++||||+++.++.++++++||.|+||-|+|.|+.++|.|+.+|++|++++|+.+|
T Consensus 170 ~pm~NhGNYvv~L~~~v~wLg~kAEe~GvEiyPg~aaSevly~edgsVkGiaT~D~GI~k~G~pKd~FerGme~hak~Ti 249 (621)
T KOG2415|consen 170 SPMDNHGNYVVSLGQLVRWLGEKAEELGVEIYPGFAASEVLYDEDGSVKGIATNDVGISKDGAPKDTFERGMEFHAKVTI 249 (621)
T ss_pred cccccCCcEEEEHHHHHHHHHHHHHhhCceeccccchhheeEcCCCcEeeEeeccccccCCCCccccccccceecceeEE
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeecCCchhhHHHhhhC
Q psy9487 85 FAEGCHGHLTKSLSSRF 101 (101)
Q Consensus 85 ~A~G~~s~l~~~l~~~~ 101 (101)
.|+|+++.|++++++||
T Consensus 250 fAEGc~G~Lskqi~kkf 266 (621)
T KOG2415|consen 250 FAEGCHGSLSKQIIKKF 266 (621)
T ss_pred EeccccchhHHHHHHHh
Confidence 99999999999999987
No 2
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=99.43 E-value=7.9e-13 Score=103.20 Aligned_cols=74 Identities=39% Similarity=0.661 Sum_probs=64.4
Q ss_pred CCcEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecC
Q psy9487 10 HGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGC 89 (101)
Q Consensus 10 ~~~~~v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~ 89 (101)
..+|+++|..||+||+++|+++|+++++++.++++..++++.++++...+ .+++|++||+|||+
T Consensus 87 ~~~y~v~R~~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~~~~~~----------------~e~~a~~vI~AdG~ 150 (396)
T COG0644 87 GEGYIVDRAKFDKWLAERAEEAGAELYPGTRVTGVIREDDGVVVGVRAGD----------------DEVRAKVVIDADGV 150 (396)
T ss_pred CceEEEEhHHhhHHHHHHHHHcCCEEEeceEEEEEEEeCCcEEEEEEcCC----------------EEEEcCEEEECCCc
Confidence 34999999999999999999999999999999999997445555555432 69999999999999
Q ss_pred CchhhHHHhh
Q psy9487 90 HGHLTKSLSS 99 (101)
Q Consensus 90 ~s~l~~~l~~ 99 (101)
+|.+++++..
T Consensus 151 ~s~l~~~lg~ 160 (396)
T COG0644 151 NSALARKLGL 160 (396)
T ss_pred chHHHHHhCC
Confidence 9999998754
No 3
>PRK10015 oxidoreductase; Provisional
Probab=99.26 E-value=3.5e-11 Score=95.28 Aligned_cols=71 Identities=35% Similarity=0.602 Sum_probs=63.2
Q ss_pred CCcEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecC
Q psy9487 10 HGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGC 89 (101)
Q Consensus 10 ~~~~~v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~ 89 (101)
.++|++.|..||+||.++|++.|++++.+++|+++..+ ++++.+|.+.+ .+++|++||+|+|+
T Consensus 100 ~~~~~v~R~~fd~~L~~~a~~~Gv~i~~~~~V~~i~~~-~~~v~~v~~~~----------------~~i~A~~VI~AdG~ 162 (429)
T PRK10015 100 HASYTVLRNRLDPWLMEQAEQAGAQFIPGVRVDALVRE-GNKVTGVQAGD----------------DILEANVVILADGV 162 (429)
T ss_pred cCceEeehhHHHHHHHHHHHHcCCEEECCcEEEEEEEe-CCEEEEEEeCC----------------eEEECCEEEEccCc
Confidence 45899999999999999999999999999999999875 67888887642 57999999999999
Q ss_pred CchhhHHH
Q psy9487 90 HGHLTKSL 97 (101)
Q Consensus 90 ~s~l~~~l 97 (101)
+|.+++++
T Consensus 163 ~s~v~~~l 170 (429)
T PRK10015 163 NSMLGRSL 170 (429)
T ss_pred chhhhccc
Confidence 99998875
No 4
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=99.21 E-value=2e-10 Score=85.98 Aligned_cols=87 Identities=21% Similarity=0.316 Sum_probs=69.5
Q ss_pred CCcEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecC
Q psy9487 10 HGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGC 89 (101)
Q Consensus 10 ~~~~~v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~ 89 (101)
.+.|++++..|.++|.++|++.|++++.++.|.++..++++++.||.++......++.+. ....|+|+.||+|+|.
T Consensus 96 ~g~~~vd~~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~----~~~~i~Ak~VI~ATG~ 171 (257)
T PRK04176 96 DGLYVADSVEAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHV----DPLTIEAKAVVDATGH 171 (257)
T ss_pred CcceeccHHHHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCC----CcEEEEcCEEEEEeCC
Confidence 457889999999999999999999999999999999864459999988643221222110 0257999999999999
Q ss_pred CchhhHHHhhh
Q psy9487 90 HGHLTKSLSSR 100 (101)
Q Consensus 90 ~s~l~~~l~~~ 100 (101)
++.+.+.|.++
T Consensus 172 ~a~v~~~l~~~ 182 (257)
T PRK04176 172 DAEVVSVLARK 182 (257)
T ss_pred CcHHHHHHHHH
Confidence 99999988765
No 5
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=99.21 E-value=1.1e-10 Score=92.16 Aligned_cols=70 Identities=33% Similarity=0.549 Sum_probs=62.0
Q ss_pred CcEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCC
Q psy9487 11 GNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH 90 (101)
Q Consensus 11 ~~~~v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~ 90 (101)
.+|.+.|..||+||.++|++.|++|+++++|+++..+ +++++++.+. +.+++|++||+|+|++
T Consensus 101 ~~~~v~R~~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~-~g~v~~v~~~----------------g~~i~A~~VI~A~G~~ 163 (428)
T PRK10157 101 RSYSVLRSKFDAWLMEQAEEAGAQLITGIRVDNLVQR-DGKVVGVEAD----------------GDVIEAKTVILADGVN 163 (428)
T ss_pred CceeeEHHHHHHHHHHHHHHCCCEEECCCEEEEEEEe-CCEEEEEEcC----------------CcEEECCEEEEEeCCC
Confidence 4799999999999999999999999999999999885 6777777643 3579999999999999
Q ss_pred chhhHHH
Q psy9487 91 GHLTKSL 97 (101)
Q Consensus 91 s~l~~~l 97 (101)
|.+++++
T Consensus 164 s~l~~~l 170 (428)
T PRK10157 164 SILAEKL 170 (428)
T ss_pred HHHHHHc
Confidence 9998875
No 6
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=99.16 E-value=8.5e-11 Score=94.07 Aligned_cols=71 Identities=25% Similarity=0.368 Sum_probs=59.8
Q ss_pred CcEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCC
Q psy9487 11 GNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH 90 (101)
Q Consensus 11 ~~~~v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~ 90 (101)
-+|.++|..||++|.++|++.||++++++ |.++..+++|.+++|++.+ |.+|.||+||+|+|..
T Consensus 147 ~ayhlDR~~fd~~L~~~A~~~Gv~~~~g~-V~~v~~~~~g~i~~v~~~~---------------g~~i~ad~~IDASG~~ 210 (454)
T PF04820_consen 147 YAYHLDRAKFDQFLRRHAEERGVEVIEGT-VVDVELDEDGRITAVRLDD---------------GRTIEADFFIDASGRR 210 (454)
T ss_dssp -EEEEEHHHHHHHHHHHHHHTT-EEEET--EEEEEE-TTSEEEEEEETT---------------SEEEEESEEEE-SGGG
T ss_pred eeEEEeHHHHHHHHHHHHhcCCCEEEeCE-EEEEEEcCCCCEEEEEECC---------------CCEEEEeEEEECCCcc
Confidence 38999999999999999999999999985 8888887788999999976 6789999999999999
Q ss_pred chhhHHH
Q psy9487 91 GHLTKSL 97 (101)
Q Consensus 91 s~l~~~l 97 (101)
+.|.+++
T Consensus 211 s~L~~~~ 217 (454)
T PF04820_consen 211 SLLARKA 217 (454)
T ss_dssp -CCCCCC
T ss_pred chhhHhh
Confidence 9998773
No 7
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=99.13 E-value=9.8e-10 Score=82.25 Aligned_cols=94 Identities=18% Similarity=0.323 Sum_probs=72.0
Q ss_pred CCCCCCCCC--cEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCC-cEEEEEeccccccCCCCCCcCCCCCeEEE
Q psy9487 3 FGMPMNNHG--NYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDG-SVKGIATGDVGIAKDGSPKDTFARGMELH 79 (101)
Q Consensus 3 ~~~~~~~~~--~~~v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g-~v~GV~~~~~g~~~~g~~~~~~~~g~~i~ 79 (101)
+|.++..++ .++.++..+.++|.++|+++|++++.++.|.+++.++++ +|.||.++.......|.+. ....++
T Consensus 83 ~gi~~~~~~~g~~~~~~~el~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~----d~~~i~ 158 (254)
T TIGR00292 83 FGIRYEDEGDGYVVADSAEFISTLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHV----DPLTQR 158 (254)
T ss_pred CCCCeeeccCceEEeeHHHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCC----CCEEEE
Confidence 455665543 456699999999999999999999999999999986332 7999998643222222110 026899
Q ss_pred ccEEEEeecCCchhhHHHhhh
Q psy9487 80 AKVTIFAEGCHGHLTKSLSSR 100 (101)
Q Consensus 80 A~~VI~A~G~~s~l~~~l~~~ 100 (101)
|+.||+|+|..+.+.+.|.++
T Consensus 159 Ak~VVdATG~~a~v~~~l~~~ 179 (254)
T TIGR00292 159 SRVVVDATGHDAEIVAVCAKK 179 (254)
T ss_pred cCEEEEeecCCchHHHHHHHH
Confidence 999999999999999888776
No 8
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=98.88 E-value=1.3e-08 Score=75.48 Aligned_cols=77 Identities=25% Similarity=0.321 Sum_probs=59.6
Q ss_pred CCcEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecC
Q psy9487 10 HGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGC 89 (101)
Q Consensus 10 ~~~~~v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~ 89 (101)
...+++.|..|+++|.+.|++.|++|+.++.+.++..+ ++.+..+.... .+|+ ..+++||+||.|||+
T Consensus 103 ~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~~~~d-~~~~~~~~~~~----~~g~-------~~~i~adlvVgADG~ 170 (356)
T PF01494_consen 103 PYGHVIDRPELDRALREEAEERGVDIRFGTRVVSIEQD-DDGVTVVVRDG----EDGE-------EETIEADLVVGADGA 170 (356)
T ss_dssp SCEEEEEHHHHHHHHHHHHHHHTEEEEESEEEEEEEEE-TTEEEEEEEET----CTCE-------EEEEEESEEEE-SGT
T ss_pred CcchhhhHHHHHHhhhhhhhhhhhhheeeeeccccccc-ccccccccccc----cCCc-------eeEEEEeeeecccCc
Confidence 34788999999999999999999999999999999886 44444333221 2232 258999999999999
Q ss_pred CchhhHHHh
Q psy9487 90 HGHLTKSLS 98 (101)
Q Consensus 90 ~s~l~~~l~ 98 (101)
+|.+++++.
T Consensus 171 ~S~vR~~l~ 179 (356)
T PF01494_consen 171 HSKVRKQLG 179 (356)
T ss_dssp T-HHHHHTT
T ss_pred ccchhhhcc
Confidence 999998875
No 9
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=98.82 E-value=3.2e-08 Score=73.42 Aligned_cols=67 Identities=25% Similarity=0.370 Sum_probs=57.3
Q ss_pred CCcEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecC
Q psy9487 10 HGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGC 89 (101)
Q Consensus 10 ~~~~~v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~ 89 (101)
..+..++-..|.++|.+.+++.|++|+++++|++|..+ ++++.||++.+ .+++|+.||+|+|+
T Consensus 139 ~~~g~i~~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~-~~~v~gv~~~~----------------g~i~ad~vV~a~G~ 201 (358)
T PF01266_consen 139 PEGGVIDPRRLIQALAAEAQRAGVEIRTGTEVTSIDVD-GGRVTGVRTSD----------------GEIRADRVVLAAGA 201 (358)
T ss_dssp TTEEEEEHHHHHHHHHHHHHHTT-EEEESEEEEEEEEE-TTEEEEEEETT----------------EEEEECEEEE--GG
T ss_pred cccccccccchhhhhHHHHHHhhhhccccccccchhhc-ccccccccccc----------------cccccceeEecccc
Confidence 34677799999999999999999999999999999996 78999999986 45999999999999
Q ss_pred Cchh
Q psy9487 90 HGHL 93 (101)
Q Consensus 90 ~s~l 93 (101)
|+..
T Consensus 202 ~s~~ 205 (358)
T PF01266_consen 202 WSPQ 205 (358)
T ss_dssp GHHH
T ss_pred ccee
Confidence 8765
No 10
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=98.81 E-value=3.7e-08 Score=71.89 Aligned_cols=72 Identities=28% Similarity=0.355 Sum_probs=58.8
Q ss_pred CCcEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecC
Q psy9487 10 HGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGC 89 (101)
Q Consensus 10 ~~~~~v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~ 89 (101)
...++++|..|+++|.+++++.|++++.+++|+++..+ ++.+. +.+.+ + +.+++|+.||+|+|.
T Consensus 83 ~~~~~i~r~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~-~~~~~-~~~~~------~--------~~~~~a~~vv~a~G~ 146 (295)
T TIGR02032 83 ELAYVIDRDAFDEQLAERAQEAGAELRLGTTVLDVEIH-DDRVV-VIVRG------G--------EGTVTAKIVIGADGS 146 (295)
T ss_pred CcEEEEEHHHHHHHHHHHHHHcCCEEEeCcEEeeEEEe-CCEEE-EEEcC------c--------cEEEEeCEEEECCCc
Confidence 34788999999999999999999999999999999886 44432 33322 0 367999999999999
Q ss_pred CchhhHHH
Q psy9487 90 HGHLTKSL 97 (101)
Q Consensus 90 ~s~l~~~l 97 (101)
+|.+.+++
T Consensus 147 ~s~~~~~~ 154 (295)
T TIGR02032 147 RSIVAKKL 154 (295)
T ss_pred chHHHHhc
Confidence 99988765
No 11
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=98.77 E-value=5.1e-08 Score=75.61 Aligned_cols=73 Identities=23% Similarity=0.263 Sum_probs=55.4
Q ss_pred EEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccC-CCCCCcCCCCCeEEEccEEEEeecCCch
Q psy9487 14 VVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAK-DGSPKDTFARGMELHAKVTIFAEGCHGH 92 (101)
Q Consensus 14 ~v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~-~g~~~~~~~~g~~i~A~~VI~A~G~~s~ 92 (101)
+++|..||++|.++|.+.|++++.+ .|+++..+ ++.+ .|.+.+ +..+ +++ ..+++|++||+|||++|.
T Consensus 88 ~~~r~~fd~~L~~~a~~~G~~v~~~-~v~~v~~~-~~~~-~v~~~~-~~~~~~~~-------~~~i~a~~VI~AdG~~S~ 156 (388)
T TIGR02023 88 MVRREVFDSYLRERAQKAGAELIHG-LFLKLERD-RDGV-TLTYRT-PKKGAGGE-------KGSVEADVVIGADGANSP 156 (388)
T ss_pred eeeHHHHHHHHHHHHHhCCCEEEee-EEEEEEEc-CCeE-EEEEEe-ccccCCCc-------ceEEEeCEEEECCCCCcH
Confidence 5999999999999999999999876 58998775 4433 455542 1000 111 257999999999999999
Q ss_pred hhHHH
Q psy9487 93 LTKSL 97 (101)
Q Consensus 93 l~~~l 97 (101)
+++++
T Consensus 157 v~r~l 161 (388)
T TIGR02023 157 VAKEL 161 (388)
T ss_pred HHHHc
Confidence 98876
No 12
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=98.76 E-value=6.8e-08 Score=75.73 Aligned_cols=77 Identities=14% Similarity=0.201 Sum_probs=55.9
Q ss_pred EEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEe-cCCcEEEEEecccc-ccCCCCCCcCCCCCeEEEccEEEEeecCC
Q psy9487 13 YVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYH-GDGSVKGIATGDVG-IAKDGSPKDTFARGMELHAKVTIFAEGCH 90 (101)
Q Consensus 13 ~~v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~-~~g~v~GV~~~~~g-~~~~g~~~~~~~~g~~i~A~~VI~A~G~~ 90 (101)
++++|..||++|+++|++.|++++.++ +.++... +.+...+|+..... ....|+ ..+++|++||+|||++
T Consensus 88 ~~v~R~~~d~~L~~~a~~~G~~v~~~~-~~~i~~~~~~~~~~~v~~~~~~~~~~~g~-------~~~i~a~~VIgADG~~ 159 (398)
T TIGR02028 88 GMLRREVLDSFLRRRAADAGATLINGL-VTKLSLPADADDPYTLHYISSDSGGPSGT-------RCTLEVDAVIGADGAN 159 (398)
T ss_pred eeeeHHHHHHHHHHHHHHCCcEEEcce-EEEEEeccCCCceEEEEEeeccccccCCC-------ccEEEeCEEEECCCcc
Confidence 369999999999999999999999885 7676542 12345556543210 001122 2579999999999999
Q ss_pred chhhHHH
Q psy9487 91 GHLTKSL 97 (101)
Q Consensus 91 s~l~~~l 97 (101)
|.+++++
T Consensus 160 S~v~~~~ 166 (398)
T TIGR02028 160 SRVAKEI 166 (398)
T ss_pred hHHHHHh
Confidence 9998876
No 13
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=98.74 E-value=8e-08 Score=73.52 Aligned_cols=69 Identities=23% Similarity=0.386 Sum_probs=58.0
Q ss_pred cEEEEhHHHHHHHHHHHHHC-CCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCC
Q psy9487 12 NYVVRLGHVVKWLGEQAEAM-GVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH 90 (101)
Q Consensus 12 ~~~v~r~~~d~~l~~~A~~~-Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~ 90 (101)
+|+++|..|++.|.+++.+. |++++.+++|+++..+ ++.+ .|.+.+ |.++.|++||+|+|.+
T Consensus 99 ~~~i~r~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~-~~~~-~v~~~~---------------g~~~~ad~vV~AdG~~ 161 (382)
T TIGR01984 99 GYVVELADLGQALLSRLALLTNIQLYCPARYKEIIRN-QDYV-RVTLDN---------------GQQLRAKLLIAADGAN 161 (382)
T ss_pred EEEEEcHHHHHHHHHHHHhCCCcEEEcCCeEEEEEEc-CCeE-EEEECC---------------CCEEEeeEEEEecCCC
Confidence 69999999999999999984 9999999999999875 3443 355533 4579999999999999
Q ss_pred chhhHHH
Q psy9487 91 GHLTKSL 97 (101)
Q Consensus 91 s~l~~~l 97 (101)
|.+.+++
T Consensus 162 S~vr~~l 168 (382)
T TIGR01984 162 SKVRELL 168 (382)
T ss_pred hHHHHHc
Confidence 9988775
No 14
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=98.73 E-value=8.5e-08 Score=76.81 Aligned_cols=76 Identities=20% Similarity=0.239 Sum_probs=54.6
Q ss_pred EEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecC-CcEEEEEeccccc-cCCCCCCcCCCCCeEEEccEEEEeecCCc
Q psy9487 14 VVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGD-GSVKGIATGDVGI-AKDGSPKDTFARGMELHAKVTIFAEGCHG 91 (101)
Q Consensus 14 ~v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~-g~v~GV~~~~~g~-~~~g~~~~~~~~g~~i~A~~VI~A~G~~s 91 (101)
+++|..||++|+++|++.|++++.+ .++++..+++ +..+.|.+.+... ..+|+ ..+++|++||.|||++|
T Consensus 128 ~v~R~~~d~~L~~~A~~~Ga~~~~~-~v~~i~~~~~~~~~~~v~~~~~~~~~~~g~-------~~~v~a~~VIgADG~~S 199 (450)
T PLN00093 128 MVRREVLDSFLRERAQSNGATLING-LFTRIDVPKDPNGPYVIHYTSYDSGSGAGT-------PKTLEVDAVIGADGANS 199 (450)
T ss_pred EecHHHHHHHHHHHHHHCCCEEEec-eEEEEEeccCCCCcEEEEEEeccccccCCC-------ccEEEeCEEEEcCCcch
Confidence 4999999999999999999999876 4777765321 2233455432100 01122 25799999999999999
Q ss_pred hhhHHH
Q psy9487 92 HLTKSL 97 (101)
Q Consensus 92 ~l~~~l 97 (101)
.+++++
T Consensus 200 ~vrr~l 205 (450)
T PLN00093 200 RVAKDI 205 (450)
T ss_pred HHHHHh
Confidence 999886
No 15
>PRK08013 oxidoreductase; Provisional
Probab=98.72 E-value=8.5e-08 Score=74.66 Aligned_cols=70 Identities=14% Similarity=0.206 Sum_probs=58.2
Q ss_pred cEEEEhHHHHHHHHHHHHHC-CCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCC
Q psy9487 12 NYVVRLGHVVKWLGEQAEAM-GVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH 90 (101)
Q Consensus 12 ~~~v~r~~~d~~l~~~A~~~-Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~ 90 (101)
+|++.|..|+++|.+++++. |++++.+++++++..+ ++.+ .|...+ |.+++|++||.|||++
T Consensus 105 ~~~i~r~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~-~~~v-~v~~~~---------------g~~i~a~lvVgADG~~ 167 (400)
T PRK08013 105 GHIIENSVIHYALWQKAQQSSDITLLAPAELQQVAWG-ENEA-FLTLKD---------------GSMLTARLVVGADGAN 167 (400)
T ss_pred EEEEEhHHHHHHHHHHHhcCCCcEEEcCCeeEEEEec-CCeE-EEEEcC---------------CCEEEeeEEEEeCCCC
Confidence 68999999999999999986 8999999999999875 3332 344433 4679999999999999
Q ss_pred chhhHHHh
Q psy9487 91 GHLTKSLS 98 (101)
Q Consensus 91 s~l~~~l~ 98 (101)
|.+++++.
T Consensus 168 S~vR~~~~ 175 (400)
T PRK08013 168 SWLRNKAD 175 (400)
T ss_pred cHHHHHcC
Confidence 99988763
No 16
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.72 E-value=9.5e-08 Score=73.79 Aligned_cols=68 Identities=18% Similarity=0.251 Sum_probs=57.8
Q ss_pred cEEEEhHHHHHHHHHHHHHCC-CEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCC
Q psy9487 12 NYVVRLGHVVKWLGEQAEAMG-VEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH 90 (101)
Q Consensus 12 ~~~v~r~~~d~~l~~~A~~~G-v~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~ 90 (101)
+|++.|..|++.|.+++++.+ ++++.++.++++..+ ++.+ .|.+.+ .+++|++||.|||.+
T Consensus 98 g~~v~r~~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~-~~~v-~v~~~~----------------~~~~adlvIgADG~~ 159 (374)
T PRK06617 98 GYVVKNSDFKKILLSKITNNPLITLIDNNQYQEVISH-NDYS-IIKFDD----------------KQIKCNLLIICDGAN 159 (374)
T ss_pred EEEEEHHHHHHHHHHHHhcCCCcEEECCCeEEEEEEc-CCeE-EEEEcC----------------CEEeeCEEEEeCCCC
Confidence 799999999999999999986 999999999999875 4443 355533 379999999999999
Q ss_pred chhhHHH
Q psy9487 91 GHLTKSL 97 (101)
Q Consensus 91 s~l~~~l 97 (101)
|.+++.+
T Consensus 160 S~vR~~l 166 (374)
T PRK06617 160 SKVRSHY 166 (374)
T ss_pred chhHHhc
Confidence 9998765
No 17
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=98.71 E-value=1.3e-07 Score=71.89 Aligned_cols=71 Identities=21% Similarity=0.250 Sum_probs=60.1
Q ss_pred CcEEEEhHHHHHHHHHHHHHCC-CEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecC
Q psy9487 11 GNYVVRLGHVVKWLGEQAEAMG-VEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGC 89 (101)
Q Consensus 11 ~~~~v~r~~~d~~l~~~A~~~G-v~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~ 89 (101)
.+|+++|..|+++|.+.+++.| ++++.+++|+++..+ ++.+ .|.+.+ |..+.+++||.|+|.
T Consensus 99 ~~~~i~r~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~-~~~~-~v~~~~---------------g~~~~~~~vi~adG~ 161 (385)
T TIGR01988 99 LGYVVENRVLQQALWERLQEYPNVTLLCPARVVELPRH-SDHV-ELTLDD---------------GQQLRARLLVGADGA 161 (385)
T ss_pred cEEEEEcHHHHHHHHHHHHhCCCcEEecCCeEEEEEec-CCee-EEEECC---------------CCEEEeeEEEEeCCC
Confidence 4799999999999999999999 999999999999875 4444 355543 457999999999999
Q ss_pred CchhhHHHh
Q psy9487 90 HGHLTKSLS 98 (101)
Q Consensus 90 ~s~l~~~l~ 98 (101)
+|.+.+++.
T Consensus 162 ~S~vr~~l~ 170 (385)
T TIGR01988 162 NSKVRQLAG 170 (385)
T ss_pred CCHHHHHcC
Confidence 999988763
No 18
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=98.69 E-value=1.5e-07 Score=72.62 Aligned_cols=69 Identities=22% Similarity=0.265 Sum_probs=58.9
Q ss_pred cEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCc
Q psy9487 12 NYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG 91 (101)
Q Consensus 12 ~~~v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s 91 (101)
+|+++|..|.+.|.+++++.|++++.+++|+++..+ ++.+. |.+.+ |.++.|+.||+|+|.+|
T Consensus 107 ~~~v~~~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~-~~~v~-v~~~~---------------g~~~~a~~vV~AdG~~S 169 (392)
T PRK08773 107 GWIVENDLLVDRLWAALHAAGVQLHCPARVVALEQD-ADRVR-LRLDD---------------GRRLEAALAIAADGAAS 169 (392)
T ss_pred EEEEEhHHHHHHHHHHHHhCCCEEEcCCeEEEEEec-CCeEE-EEECC---------------CCEEEeCEEEEecCCCc
Confidence 799999999999999999999999999999999875 44443 66543 45799999999999999
Q ss_pred hhhHHH
Q psy9487 92 HLTKSL 97 (101)
Q Consensus 92 ~l~~~l 97 (101)
.+.+.+
T Consensus 170 ~vr~~~ 175 (392)
T PRK08773 170 TLRELA 175 (392)
T ss_pred hHHHhh
Confidence 887765
No 19
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=98.66 E-value=1.8e-07 Score=72.02 Aligned_cols=70 Identities=21% Similarity=0.203 Sum_probs=58.3
Q ss_pred CcEEEEhHHHHHHHHHHHHHC-CCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecC
Q psy9487 11 GNYVVRLGHVVKWLGEQAEAM-GVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGC 89 (101)
Q Consensus 11 ~~~~v~r~~~d~~l~~~A~~~-Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~ 89 (101)
.+|+++|..|++.|.+++++. |++++.++.++++..+ ++. +.|.+.+ +.+++|++||+|||+
T Consensus 105 ~g~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~-~~~-~~v~~~~---------------g~~~~a~~vI~AdG~ 167 (391)
T PRK08020 105 LGYMVENRVLQLALWQALEAHPNVTLRCPASLQALQRD-DDG-WELTLAD---------------GEEIQAKLVIGADGA 167 (391)
T ss_pred cEEEEEcHHHHHHHHHHHHcCCCcEEEcCCeeEEEEEc-CCe-EEEEECC---------------CCEEEeCEEEEeCCC
Confidence 378999999999999999887 9999999999999764 333 3455543 457999999999999
Q ss_pred CchhhHHH
Q psy9487 90 HGHLTKSL 97 (101)
Q Consensus 90 ~s~l~~~l 97 (101)
+|.+++.+
T Consensus 168 ~S~vR~~~ 175 (391)
T PRK08020 168 NSQVRQMA 175 (391)
T ss_pred CchhHHHc
Confidence 99997765
No 20
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.66 E-value=2.3e-07 Score=71.48 Aligned_cols=69 Identities=22% Similarity=0.355 Sum_probs=58.3
Q ss_pred cEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCc
Q psy9487 12 NYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG 91 (101)
Q Consensus 12 ~~~v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s 91 (101)
+++++|..|++.|.+++++.|++++.+++|+++..+ ++.+ .|.+.+ |..+.+++||.|+|.+|
T Consensus 105 ~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~-~~~v-~v~~~~---------------g~~~~ad~vI~AdG~~S 167 (403)
T PRK07333 105 AHMVENRVLINALRKRAEALGIDLREATSVTDFETR-DEGV-TVTLSD---------------GSVLEARLLVAADGARS 167 (403)
T ss_pred EEEeEhHHHHHHHHHHHHhCCCEEEcCCEEEEEEEc-CCEE-EEEECC---------------CCEEEeCEEEEcCCCCh
Confidence 578999999999999999999999999999999874 4443 355543 45799999999999999
Q ss_pred hhhHHH
Q psy9487 92 HLTKSL 97 (101)
Q Consensus 92 ~l~~~l 97 (101)
.+.+++
T Consensus 168 ~vr~~~ 173 (403)
T PRK07333 168 KLRELA 173 (403)
T ss_pred HHHHHc
Confidence 987765
No 21
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.64 E-value=2.2e-07 Score=72.02 Aligned_cols=69 Identities=14% Similarity=0.161 Sum_probs=58.3
Q ss_pred cEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCc
Q psy9487 12 NYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG 91 (101)
Q Consensus 12 ~~~v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s 91 (101)
+|++.|..+.+.|.+++++.|++++.++++.++..+ ++.+ .|.+.+ |.++.|++||.|||++|
T Consensus 106 g~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~-~~~v-~v~~~~---------------g~~~~a~~vVgAdG~~S 168 (405)
T PRK05714 106 GHIVENRVVQDALLERLHDSDIGLLANARLEQMRRS-GDDW-LLTLAD---------------GRQLRAPLVVAADGANS 168 (405)
T ss_pred EEEEEhHHHHHHHHHHHhcCCCEEEcCCEEEEEEEc-CCeE-EEEECC---------------CCEEEeCEEEEecCCCc
Confidence 689999999999999999999999999999999875 3433 355543 45799999999999999
Q ss_pred hhhHHH
Q psy9487 92 HLTKSL 97 (101)
Q Consensus 92 ~l~~~l 97 (101)
.+.+.+
T Consensus 169 ~vR~~l 174 (405)
T PRK05714 169 AVRRLA 174 (405)
T ss_pred hhHHhc
Confidence 998765
No 22
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=98.62 E-value=1.1e-07 Score=70.75 Aligned_cols=93 Identities=23% Similarity=0.348 Sum_probs=65.3
Q ss_pred CCCCCCC--CcEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEcc
Q psy9487 4 GMPMNNH--GNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAK 81 (101)
Q Consensus 4 ~~~~~~~--~~~~v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~ 81 (101)
|.+.+++ +-|+.+-..+..+|+.+|.++|++|+..+.|.++.+.+|+||.||.++-.-....|-+ .+=..|+|+
T Consensus 80 gi~y~~~~~g~~v~d~~~~~s~L~s~a~~aGakifn~~~vEDvi~r~~~rV~GvViNWt~V~~~glH----vDPl~i~ak 155 (230)
T PF01946_consen 80 GIPYEEYGDGYYVADSVEFTSTLASKAIDAGAKIFNLTSVEDVIVREDDRVAGVVINWTPVEMAGLH----VDPLTIRAK 155 (230)
T ss_dssp T---EE-SSEEEES-HHHHHHHHHHHHHTTTEEEEETEEEEEEEEECSCEEEEEEEEEHHHHTT--T-----B-EEEEES
T ss_pred CceeEEeCCeEEEEcHHHHHHHHHHHHhcCCCEEEeeeeeeeeEEEcCCeEEEEEEEehHHhHhhcC----CCcceEEEe
Confidence 3444443 4677799999999999999999999999999999986458999999884333333322 111579999
Q ss_pred EEEEeecCCchhhHHHhhh
Q psy9487 82 VTIFAEGCHGHLTKSLSSR 100 (101)
Q Consensus 82 ~VI~A~G~~s~l~~~l~~~ 100 (101)
+||+|+|-.+.+.+.+.+|
T Consensus 156 ~ViDaTGHda~v~~~~~kk 174 (230)
T PF01946_consen 156 VVIDATGHDAEVVRVLAKK 174 (230)
T ss_dssp EEEE---SSSSSTSHHHHH
T ss_pred EEEeCCCCchHHHHHHHHH
Confidence 9999999999887766554
No 23
>PRK06185 hypothetical protein; Provisional
Probab=98.60 E-value=4.1e-07 Score=70.36 Aligned_cols=73 Identities=21% Similarity=0.323 Sum_probs=60.6
Q ss_pred cEEEEhHHHHHHHHHHHHHC-CCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCC
Q psy9487 12 NYVVRLGHVVKWLGEQAEAM-GVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH 90 (101)
Q Consensus 12 ~~~v~r~~~d~~l~~~A~~~-Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~ 90 (101)
++++.+..+.++|.+++++. |++++.+++++++..+ ++++.+|.+.. .+|+ .+++|++||+|||.+
T Consensus 102 ~~~v~~~~l~~~L~~~~~~~~~v~i~~~~~v~~~~~~-~~~v~~v~~~~----~~g~--------~~i~a~~vI~AdG~~ 168 (407)
T PRK06185 102 IAMMPQWDFLDFLAEEASAYPNFTLRMGAEVTGLIEE-GGRVTGVRART----PDGP--------GEIRADLVVGADGRH 168 (407)
T ss_pred EEEeehHHHHHHHHHHHhhCCCcEEEeCCEEEEEEEe-CCEEEEEEEEc----CCCc--------EEEEeCEEEECCCCc
Confidence 67899999999999999875 8999999999999986 67887777653 1111 479999999999999
Q ss_pred chhhHHH
Q psy9487 91 GHLTKSL 97 (101)
Q Consensus 91 s~l~~~l 97 (101)
|.+.+++
T Consensus 169 S~vr~~~ 175 (407)
T PRK06185 169 SRVRALA 175 (407)
T ss_pred hHHHHHc
Confidence 9987765
No 24
>PRK07045 putative monooxygenase; Reviewed
Probab=98.59 E-value=3.7e-07 Score=70.43 Aligned_cols=70 Identities=14% Similarity=0.250 Sum_probs=59.0
Q ss_pred EEEEhHHHHHHHHHHHHH-CCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCc
Q psy9487 13 YVVRLGHVVKWLGEQAEA-MGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG 91 (101)
Q Consensus 13 ~~v~r~~~d~~l~~~A~~-~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s 91 (101)
+.+.|..+.++|.+++.+ .|++++.+++++++..++++.++.|...+ |.++.+++||.|||.+|
T Consensus 101 ~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~---------------g~~~~~~~vIgADG~~S 165 (388)
T PRK07045 101 ILIPCEQLRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSD---------------GERVAPTVLVGADGARS 165 (388)
T ss_pred EEccHHHHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeCC---------------CCEEECCEEEECCCCCh
Confidence 457899999999999864 68999999999999886556666777654 46899999999999999
Q ss_pred hhhHHH
Q psy9487 92 HLTKSL 97 (101)
Q Consensus 92 ~l~~~l 97 (101)
.+++++
T Consensus 166 ~vR~~~ 171 (388)
T PRK07045 166 MIRDDV 171 (388)
T ss_pred HHHHHh
Confidence 998875
No 25
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=98.57 E-value=4.3e-07 Score=70.64 Aligned_cols=72 Identities=24% Similarity=0.291 Sum_probs=62.4
Q ss_pred CCcEEEEhHHHHHHHHHHHHHCC-CEEecCCceeEEEEecCCcEEEEEec-cccccCCCCCCcCCCCCeEEEccEEEEee
Q psy9487 10 HGNYVVRLGHVVKWLGEQAEAMG-VEIYPGIPASEVLYHGDGSVKGIATG-DVGIAKDGSPKDTFARGMELHAKVTIFAE 87 (101)
Q Consensus 10 ~~~~~v~r~~~d~~l~~~A~~~G-v~i~~gt~v~~i~~~~~g~v~GV~~~-~~g~~~~g~~~~~~~~g~~i~A~~VI~A~ 87 (101)
..++++.+..|.+.|.+++.+.+ ++++.+++|+.+..+ ++.+. |... + |.+++|++||.||
T Consensus 96 ~~~~~~~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~-~~~v~-v~l~~d---------------G~~~~a~llVgAD 158 (387)
T COG0654 96 ALGYVVPRSDLLNALLEAARALPNVTLRFGAEVEAVEQD-GDGVT-VTLSFD---------------GETLDADLLVGAD 158 (387)
T ss_pred cceEEeEhHHHHHHHHHHHhhCCCcEEEcCceEEEEEEc-CCceE-EEEcCC---------------CcEEecCEEEECC
Confidence 34899999999999999999988 999999999999986 55666 6665 4 5689999999999
Q ss_pred cCCchhhHHHh
Q psy9487 88 GCHGHLTKSLS 98 (101)
Q Consensus 88 G~~s~l~~~l~ 98 (101)
|.+|.+.+.+-
T Consensus 159 G~~S~vR~~~~ 169 (387)
T COG0654 159 GANSAVRRAAG 169 (387)
T ss_pred CCchHHHHhcC
Confidence 99999987653
No 26
>PLN02985 squalene monooxygenase
Probab=98.57 E-value=4.3e-07 Score=73.93 Aligned_cols=74 Identities=23% Similarity=0.447 Sum_probs=60.0
Q ss_pred cEEEEhHHHHHHHHHHHHHC-CCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCC
Q psy9487 12 NYVVRLGHVVKWLGEQAEAM-GVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH 90 (101)
Q Consensus 12 ~~~v~r~~~d~~l~~~A~~~-Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~ 90 (101)
+++++|..|.+.|.++|++. ||+++.+ ++++++.+ ++.+.||+... .+|+. .+++|++||+|||.+
T Consensus 141 g~~i~r~~l~~~L~~~a~~~~~V~i~~g-tvv~li~~-~~~v~gV~~~~----~dG~~-------~~~~AdLVVgADG~~ 207 (514)
T PLN02985 141 ARSFHNGRFVQRLRQKASSLPNVRLEEG-TVKSLIEE-KGVIKGVTYKN----SAGEE-------TTALAPLTVVCDGCY 207 (514)
T ss_pred eeeeecHHHHHHHHHHHHhCCCeEEEee-eEEEEEEc-CCEEEEEEEEc----CCCCE-------EEEECCEEEECCCCc
Confidence 68999999999999999887 6999876 57787764 67888888753 23332 468899999999999
Q ss_pred chhhHHHh
Q psy9487 91 GHLTKSLS 98 (101)
Q Consensus 91 s~l~~~l~ 98 (101)
|.+++++.
T Consensus 208 S~vR~~l~ 215 (514)
T PLN02985 208 SNLRRSLN 215 (514)
T ss_pred hHHHHHhc
Confidence 99988774
No 27
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=98.53 E-value=7.9e-07 Score=68.17 Aligned_cols=69 Identities=14% Similarity=0.172 Sum_probs=57.3
Q ss_pred CcEEEEhHHHHHHHHHHHHHCC-CEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecC
Q psy9487 11 GNYVVRLGHVVKWLGEQAEAMG-VEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGC 89 (101)
Q Consensus 11 ~~~~v~r~~~d~~l~~~A~~~G-v~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~ 89 (101)
..|.++|..|++.|.++|++.| ++++ +++++++..+ ++.+ .|.+.+ |.+++|+.||.|+|.
T Consensus 104 ~~~~i~~~~l~~~L~~~~~~~~~v~~~-~~~v~~i~~~-~~~~-~v~~~~---------------g~~~~a~~vI~adG~ 165 (388)
T PRK07608 104 LAWIVESSLIERALWAALRFQPNLTWF-PARAQGLEVD-PDAA-TLTLAD---------------GQVLRADLVVGADGA 165 (388)
T ss_pred CEEEEEhHHHHHHHHHHHHhCCCcEEE-cceeEEEEec-CCeE-EEEECC---------------CCEEEeeEEEEeCCC
Confidence 3688999999999999999998 9999 8999999764 4443 466654 457999999999999
Q ss_pred CchhhHHH
Q psy9487 90 HGHLTKSL 97 (101)
Q Consensus 90 ~s~l~~~l 97 (101)
+|.+.+.+
T Consensus 166 ~S~vr~~~ 173 (388)
T PRK07608 166 HSWVRSQA 173 (388)
T ss_pred CchHHHhc
Confidence 99987765
No 28
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=98.52 E-value=4.5e-07 Score=67.69 Aligned_cols=64 Identities=22% Similarity=0.233 Sum_probs=55.5
Q ss_pred EEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCch
Q psy9487 13 YVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH 92 (101)
Q Consensus 13 ~~v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~ 92 (101)
-.++-..+.+.|++.|++.|++++.+++|+++..+ ++++.+|.+.+ ..++|+.||+|+|+|+.
T Consensus 132 g~v~p~~l~~~l~~~~~~~g~~~~~~~~v~~i~~~-~~~~~~v~~~~----------------g~~~a~~vV~a~G~~~~ 194 (337)
T TIGR02352 132 AHVDPRALLKALEKALEKLGVEIIEHTEVQHIEIR-GEKVTAIVTPS----------------GDVQADQVVLAAGAWAG 194 (337)
T ss_pred ceEChHHHHHHHHHHHHHcCCEEEccceEEEEEee-CCEEEEEEcCC----------------CEEECCEEEEcCChhhh
Confidence 34577889999999999999999999999999985 67888898764 37999999999999975
Q ss_pred h
Q psy9487 93 L 93 (101)
Q Consensus 93 l 93 (101)
-
T Consensus 195 ~ 195 (337)
T TIGR02352 195 E 195 (337)
T ss_pred h
Confidence 3
No 29
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=98.52 E-value=7e-07 Score=70.53 Aligned_cols=72 Identities=18% Similarity=0.202 Sum_probs=59.0
Q ss_pred cEEEEhHHHHHHHHHHHHHCC---CEEecCCceeEEEEe-----cCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEE
Q psy9487 12 NYVVRLGHVVKWLGEQAEAMG---VEIYPGIPASEVLYH-----GDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVT 83 (101)
Q Consensus 12 ~~~v~r~~~d~~l~~~A~~~G---v~i~~gt~v~~i~~~-----~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~V 83 (101)
+|+++|..+.+.|.+++++.+ ++++.+++|.++..+ +++..+.|.+.+ |.+++|++|
T Consensus 111 ~~~i~~~~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~~v~v~~~~---------------g~~i~a~ll 175 (437)
T TIGR01989 111 ACIIENDNIQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNWVHITLSD---------------GQVLYTKLL 175 (437)
T ss_pred EEEEEHHHHHHHHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCCCceEEEEcC---------------CCEEEeeEE
Confidence 789999999999999999876 999999999999762 123334465543 468999999
Q ss_pred EEeecCCchhhHHHh
Q psy9487 84 IFAEGCHGHLTKSLS 98 (101)
Q Consensus 84 I~A~G~~s~l~~~l~ 98 (101)
|.|||++|.+.+++.
T Consensus 176 VgADG~~S~vR~~~g 190 (437)
T TIGR01989 176 IGADGSNSNVRKAAN 190 (437)
T ss_pred EEecCCCChhHHHcC
Confidence 999999999988763
No 30
>PRK07538 hypothetical protein; Provisional
Probab=98.52 E-value=7.5e-07 Score=69.55 Aligned_cols=74 Identities=19% Similarity=0.254 Sum_probs=56.7
Q ss_pred cEEEEhHHHHHHHHHHHHH-CCC-EEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecC
Q psy9487 12 NYVVRLGHVVKWLGEQAEA-MGV-EIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGC 89 (101)
Q Consensus 12 ~~~v~r~~~d~~l~~~A~~-~Gv-~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~ 89 (101)
.+.++|..|++.|++++.+ +|. +|+.+++|+++..++++.++.+... .+|+ +.+++||+||.|||.
T Consensus 96 ~~~i~R~~l~~~L~~~~~~~~g~~~i~~~~~v~~~~~~~~~~~~~~~~~-----~~g~-------~~~~~adlvIgADG~ 163 (413)
T PRK07538 96 QYSIHRGELQMLLLDAVRERLGPDAVRTGHRVVGFEQDADVTVVFLGDR-----AGGD-------LVSVRGDVLIGADGI 163 (413)
T ss_pred eEEEEHHHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEecc-----CCCc-------cceEEeeEEEECCCC
Confidence 4679999999999999876 585 6999999999987544433333321 1222 258999999999999
Q ss_pred CchhhHHH
Q psy9487 90 HGHLTKSL 97 (101)
Q Consensus 90 ~s~l~~~l 97 (101)
+|.+++++
T Consensus 164 ~S~vR~~l 171 (413)
T PRK07538 164 HSAVRAQL 171 (413)
T ss_pred CHHHhhhh
Confidence 99998876
No 31
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=98.51 E-value=6.9e-07 Score=70.25 Aligned_cols=71 Identities=20% Similarity=0.303 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchhhHHH
Q psy9487 18 GHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLTKSL 97 (101)
Q Consensus 18 ~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l~~~l 97 (101)
..+.+.|.+++++.|++|+++++|++++.+++++|+||++.+ .+++. ..+.++.||+|+|.++.. ++|
T Consensus 130 ~~l~~~l~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~----~~g~~-------~~~~a~~VVlAtGg~~~n-~~m 197 (439)
T TIGR01813 130 AEIVQKLYKKAKKEGIDTRLNSKVEDLIQDDQGTVVGVVVKG----KGKGI-------YIKAAKAVVLATGGFGSN-KEM 197 (439)
T ss_pred HHHHHHHHHHHHHcCCEEEeCCEeeEeEECCCCcEEEEEEEe----CCCeE-------EEEecceEEEecCCCCCC-HHH
Confidence 467888999999999999999999999986567999998864 12221 368899999999999986 344
Q ss_pred hhh
Q psy9487 98 SSR 100 (101)
Q Consensus 98 ~~~ 100 (101)
.++
T Consensus 198 ~~~ 200 (439)
T TIGR01813 198 IAK 200 (439)
T ss_pred HHH
Confidence 433
No 32
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=98.49 E-value=5.3e-07 Score=70.06 Aligned_cols=66 Identities=27% Similarity=0.427 Sum_probs=52.4
Q ss_pred EhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCch
Q psy9487 16 RLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH 92 (101)
Q Consensus 16 ~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~ 92 (101)
.-..+.+.|.+.++++|++|++++++++++.+ +++|+||...+. .+|+. ..|+|+.||+|+|..+.
T Consensus 139 ~g~~~~~~l~~~~~~~gv~i~~~~~~~~Li~e-~g~V~Gv~~~~~---~~g~~-------~~i~A~aVIlAtGG~~~ 204 (417)
T PF00890_consen 139 GGKALIEALAKAAEEAGVDIRFNTRVTDLITE-DGRVTGVVAENP---ADGEF-------VRIKAKAVILATGGFGG 204 (417)
T ss_dssp HHHHHHHHHHHHHHHTTEEEEESEEEEEEEEE-TTEEEEEEEEET---TTCEE-------EEEEESEEEE----BGG
T ss_pred cHHHHHHHHHHHHhhcCeeeeccceeeeEEEe-CCceeEEEEEEC---CCCeE-------EEEeeeEEEeccCcccc
Confidence 45678889999999999999999999999996 889999999841 23332 58999999999999986
No 33
>PRK11445 putative oxidoreductase; Provisional
Probab=98.47 E-value=8.4e-07 Score=68.19 Aligned_cols=71 Identities=17% Similarity=0.236 Sum_probs=54.5
Q ss_pred cEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCc
Q psy9487 12 NYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG 91 (101)
Q Consensus 12 ~~~v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s 91 (101)
.+.++|..||++|.+. .+.||+++.++.++++..+ ++. +.|.+.+ +|+ ..+++|++||+|||++|
T Consensus 93 ~~~i~R~~~~~~L~~~-~~~gv~v~~~~~v~~i~~~-~~~-~~v~~~~-----~g~-------~~~i~a~~vV~AdG~~S 157 (351)
T PRK11445 93 YINIDRHKFDLWLKSL-IPASVEVYHNSLCRKIWRE-DDG-YHVIFRA-----DGW-------EQHITARYLVGADGANS 157 (351)
T ss_pred cccccHHHHHHHHHHH-HhcCCEEEcCCEEEEEEEc-CCE-EEEEEec-----CCc-------EEEEEeCEEEECCCCCc
Confidence 3579999999999885 5779999999999999875 333 3355422 121 13799999999999999
Q ss_pred hhhHHH
Q psy9487 92 HLTKSL 97 (101)
Q Consensus 92 ~l~~~l 97 (101)
.+++++
T Consensus 158 ~vr~~l 163 (351)
T PRK11445 158 MVRRHL 163 (351)
T ss_pred HHhHHh
Confidence 998876
No 34
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=98.46 E-value=1.4e-06 Score=67.76 Aligned_cols=70 Identities=17% Similarity=0.208 Sum_probs=58.4
Q ss_pred cEEEEhHHHHHHHHHHHHHC-CCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCC
Q psy9487 12 NYVVRLGHVVKWLGEQAEAM-GVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH 90 (101)
Q Consensus 12 ~~~v~r~~~d~~l~~~A~~~-Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~ 90 (101)
+|++.+..+.+.|.+++.+. |++++.+++|+++..+ ++. +.|.+.+ |..++|++||.|||.+
T Consensus 105 g~~~~~~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~-~~~-~~v~~~~---------------g~~~~a~lvIgADG~~ 167 (405)
T PRK08850 105 GHIVENRVIQLALLEQVQKQDNVTLLMPARCQSIAVG-ESE-AWLTLDN---------------GQALTAKLVVGADGAN 167 (405)
T ss_pred EEEEEHHHHHHHHHHHHhcCCCeEEEcCCeeEEEEee-CCe-EEEEECC---------------CCEEEeCEEEEeCCCC
Confidence 78999999999999999875 7999999999999875 333 3466543 4679999999999999
Q ss_pred chhhHHHh
Q psy9487 91 GHLTKSLS 98 (101)
Q Consensus 91 s~l~~~l~ 98 (101)
|.+++++.
T Consensus 168 S~vR~~~~ 175 (405)
T PRK08850 168 SWLRRQMD 175 (405)
T ss_pred ChhHHHcC
Confidence 99988764
No 35
>PRK08244 hypothetical protein; Provisional
Probab=98.46 E-value=1.2e-06 Score=70.07 Aligned_cols=72 Identities=24% Similarity=0.306 Sum_probs=57.9
Q ss_pred cEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCc
Q psy9487 12 NYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG 91 (101)
Q Consensus 12 ~~~v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s 91 (101)
.+.+.+..+.+.|.+.+++.|++++.+++++++..+ ++.+. |.+.+ .+| ..+++|++||.|||++|
T Consensus 94 ~~~i~q~~le~~L~~~~~~~gv~v~~~~~v~~i~~~-~~~v~-v~~~~----~~g--------~~~i~a~~vVgADG~~S 159 (493)
T PRK08244 94 TLFLPQAETEKVLEEHARSLGVEIFRGAEVLAVRQD-GDGVE-VVVRG----PDG--------LRTLTSSYVVGADGAGS 159 (493)
T ss_pred EEEecHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEc-CCeEE-EEEEe----CCc--------cEEEEeCEEEECCCCCh
Confidence 578999999999999999999999999999999875 44432 44432 111 14799999999999999
Q ss_pred hhhHHH
Q psy9487 92 HLTKSL 97 (101)
Q Consensus 92 ~l~~~l 97 (101)
.+.+++
T Consensus 160 ~vR~~l 165 (493)
T PRK08244 160 IVRKQA 165 (493)
T ss_pred HHHHhc
Confidence 998776
No 36
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.46 E-value=1.5e-06 Score=66.60 Aligned_cols=69 Identities=29% Similarity=0.398 Sum_probs=57.1
Q ss_pred cEEEEhHHHHHHHHHHHHH-CCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCC
Q psy9487 12 NYVVRLGHVVKWLGEQAEA-MGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH 90 (101)
Q Consensus 12 ~~~v~r~~~d~~l~~~A~~-~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~ 90 (101)
++.+.|..|++.|.+.+++ .|++++.+++|+++..+ ++.+. |.+.+ +..+.++.||+|+|.+
T Consensus 106 ~~~~~~~~l~~~l~~~~~~~~g~~~~~~~~v~~i~~~-~~~~~-v~~~~---------------g~~~~a~~vI~AdG~~ 168 (395)
T PRK05732 106 GYVVELHDVGQRLFALLDKAPGVTLHCPARVANVERT-QGSVR-VTLDD---------------GETLTGRLLVAADGSH 168 (395)
T ss_pred EEEEEhHHHHHHHHHHHhcCCCcEEEcCCEEEEEEEc-CCeEE-EEECC---------------CCEEEeCEEEEecCCC
Confidence 6889999999999999877 48999999999999764 44433 66644 3579999999999999
Q ss_pred chhhHHH
Q psy9487 91 GHLTKSL 97 (101)
Q Consensus 91 s~l~~~l 97 (101)
|.+.+.+
T Consensus 169 S~vr~~~ 175 (395)
T PRK05732 169 SALREAL 175 (395)
T ss_pred hhhHHhh
Confidence 9998765
No 37
>PRK08163 salicylate hydroxylase; Provisional
Probab=98.44 E-value=1.5e-06 Score=66.97 Aligned_cols=69 Identities=16% Similarity=0.111 Sum_probs=56.9
Q ss_pred cEEEEhHHHHHHHHHHHHHCC-CEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCC
Q psy9487 12 NYVVRLGHVVKWLGEQAEAMG-VEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH 90 (101)
Q Consensus 12 ~~~v~r~~~d~~l~~~A~~~G-v~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~ 90 (101)
.+++.|..|.+.|.+++.+.| ++++.++.++++..+ ++.+. |.+.+ |.++.|++||.|||.+
T Consensus 103 ~~~i~r~~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~-~~~v~-v~~~~---------------g~~~~ad~vV~AdG~~ 165 (396)
T PRK08163 103 YAVIHRADIHLSLLEAVLDHPLVEFRTSTHVVGIEQD-GDGVT-VFDQQ---------------GNRWTGDALIGCDGVK 165 (396)
T ss_pred EEEEEHHHHHHHHHHHHHhcCCcEEEeCCEEEEEecC-CCceE-EEEcC---------------CCEEecCEEEECCCcC
Confidence 367999999999999998876 999999999999874 44433 55443 4579999999999999
Q ss_pred chhhHHH
Q psy9487 91 GHLTKSL 97 (101)
Q Consensus 91 s~l~~~l 97 (101)
|.+.+++
T Consensus 166 S~~r~~~ 172 (396)
T PRK08163 166 SVVRQSL 172 (396)
T ss_pred hHHHhhc
Confidence 9997765
No 38
>PRK07121 hypothetical protein; Validated
Probab=98.42 E-value=1.6e-06 Score=69.56 Aligned_cols=64 Identities=25% Similarity=0.376 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEc-cEEEEeecCCchh
Q psy9487 18 GHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHA-KVTIFAEGCHGHL 93 (101)
Q Consensus 18 ~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A-~~VI~A~G~~s~l 93 (101)
..+.+.|.+++++.|++|+++++|++++.+++++|+||++.+ +++. ..|+| +.||+|+|.++..
T Consensus 177 ~~~~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~-----~~~~-------~~i~a~k~VVlAtGg~~~N 241 (492)
T PRK07121 177 AMLMDPLAKRAAALGVQIRYDTRATRLIVDDDGRVVGVEARR-----YGET-------VAIRARKGVVLAAGGFAMN 241 (492)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEECCCCCEEEEEEEe-----CCcE-------EEEEeCCEEEECCCCcCcC
Confidence 457788999999999999999999999986457999998853 2221 57999 9999999999875
No 39
>PRK07588 hypothetical protein; Provisional
Probab=98.42 E-value=1.4e-06 Score=67.34 Aligned_cols=68 Identities=16% Similarity=0.152 Sum_probs=55.0
Q ss_pred cEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCc
Q psy9487 12 NYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG 91 (101)
Q Consensus 12 ~~~v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s 91 (101)
-+.+.|..|.+.|.+.+. .|++++.+++|+++..+ ++.+. |.+.+ |..+.+++||.|||.+|
T Consensus 97 ~~~i~r~~l~~~L~~~~~-~~v~i~~~~~v~~i~~~-~~~v~-v~~~~---------------g~~~~~d~vIgADG~~S 158 (391)
T PRK07588 97 FTSLPRGDLAAAIYTAID-GQVETIFDDSIATIDEH-RDGVR-VTFER---------------GTPRDFDLVIGADGLHS 158 (391)
T ss_pred eEEEEHHHHHHHHHHhhh-cCeEEEeCCEEeEEEEC-CCeEE-EEECC---------------CCEEEeCEEEECCCCCc
Confidence 368999999999887654 48999999999999875 44443 55544 45789999999999999
Q ss_pred hhhHHH
Q psy9487 92 HLTKSL 97 (101)
Q Consensus 92 ~l~~~l 97 (101)
.+.+.+
T Consensus 159 ~vR~~~ 164 (391)
T PRK07588 159 HVRRLV 164 (391)
T ss_pred cchhhc
Confidence 997754
No 40
>PRK06847 hypothetical protein; Provisional
Probab=98.41 E-value=1.8e-06 Score=65.95 Aligned_cols=69 Identities=14% Similarity=0.189 Sum_probs=58.1
Q ss_pred cEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCc
Q psy9487 12 NYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG 91 (101)
Q Consensus 12 ~~~v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s 91 (101)
.+.+.|..|.+.|.+.+++.|++|+.+++++++..+ ++. +.|.+.+ |.++.++.||+|+|.+|
T Consensus 101 ~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~-~~~-~~v~~~~---------------g~~~~ad~vI~AdG~~s 163 (375)
T PRK06847 101 GGGIMRPALARILADAARAAGADVRLGTTVTAIEQD-DDG-VTVTFSD---------------GTTGRYDLVVGADGLYS 163 (375)
T ss_pred cccCcHHHHHHHHHHHHHHhCCEEEeCCEEEEEEEc-CCE-EEEEEcC---------------CCEEEcCEEEECcCCCc
Confidence 467899999999999999999999999999999874 443 3455543 46799999999999999
Q ss_pred hhhHHH
Q psy9487 92 HLTKSL 97 (101)
Q Consensus 92 ~l~~~l 97 (101)
.+.+++
T Consensus 164 ~~r~~l 169 (375)
T PRK06847 164 KVRSLV 169 (375)
T ss_pred chhhHh
Confidence 998776
No 41
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.41 E-value=2.1e-06 Score=66.43 Aligned_cols=69 Identities=16% Similarity=0.181 Sum_probs=56.6
Q ss_pred cEEEEhHHHHHHHHHHHHHC-CCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCC
Q psy9487 12 NYVVRLGHVVKWLGEQAEAM-GVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH 90 (101)
Q Consensus 12 ~~~v~r~~~d~~l~~~A~~~-Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~ 90 (101)
+|++.+..+.+.|.+++++. |++++.+++++++..+ ++.+ .|.+.+ |.++++++||.|||.+
T Consensus 104 g~~i~~~~l~~~L~~~~~~~~~i~i~~~~~v~~~~~~-~~~~-~v~~~~---------------g~~~~~~lvIgADG~~ 166 (384)
T PRK08849 104 GYIVENRLIQLGLWQQFAQYPNLTLMCPEKLADLEFS-AEGN-RVTLES---------------GAEIEAKWVIGADGAN 166 (384)
T ss_pred EEEEEcHHHHHHHHHHHHhCCCeEEECCCceeEEEEc-CCeE-EEEECC---------------CCEEEeeEEEEecCCC
Confidence 68899889999999887664 7999999999999885 3333 355543 4689999999999999
Q ss_pred chhhHHH
Q psy9487 91 GHLTKSL 97 (101)
Q Consensus 91 s~l~~~l 97 (101)
|.+++++
T Consensus 167 S~vR~~~ 173 (384)
T PRK08849 167 SQVRQLA 173 (384)
T ss_pred chhHHhc
Confidence 9998875
No 42
>PRK09126 hypothetical protein; Provisional
Probab=98.40 E-value=2.7e-06 Score=65.43 Aligned_cols=69 Identities=19% Similarity=0.276 Sum_probs=57.4
Q ss_pred cEEEEhHHHHHHHHHHHHH-CCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCC
Q psy9487 12 NYVVRLGHVVKWLGEQAEA-MGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH 90 (101)
Q Consensus 12 ~~~v~r~~~d~~l~~~A~~-~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~ 90 (101)
+|.+.|..+++.|.+++.+ .|++|+.+++|+++..+ ++. +.|.+.+ |.++.|++||.|||.+
T Consensus 104 g~~~~~~~l~~~l~~~~~~~~g~~i~~~~~v~~~~~~-~~~-~~v~~~~---------------g~~~~a~~vI~AdG~~ 166 (392)
T PRK09126 104 GYLVPNHLIRRAAYEAVSQQDGIELLTGTRVTAVRTD-DDG-AQVTLAN---------------GRRLTARLLVAADSRF 166 (392)
T ss_pred eEEEeHHHHHHHHHHHHhhCCCcEEEcCCeEEEEEEc-CCe-EEEEEcC---------------CCEEEeCEEEEeCCCC
Confidence 6889999999999998854 79999999999999774 443 3466543 4689999999999999
Q ss_pred chhhHHH
Q psy9487 91 GHLTKSL 97 (101)
Q Consensus 91 s~l~~~l 97 (101)
|.+.+++
T Consensus 167 S~vr~~~ 173 (392)
T PRK09126 167 SATRRQL 173 (392)
T ss_pred chhhHhc
Confidence 9998876
No 43
>PRK06184 hypothetical protein; Provisional
Probab=98.40 E-value=1.6e-06 Score=69.48 Aligned_cols=73 Identities=16% Similarity=0.167 Sum_probs=58.4
Q ss_pred cEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCc
Q psy9487 12 NYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG 91 (101)
Q Consensus 12 ~~~v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s 91 (101)
.+++.+..+.+.|.+.+++.|++|+.+++++++..+ ++.|+ +.+.+ .++ +.+++|++||.|||++|
T Consensus 103 ~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~i~~~-~~~v~-v~~~~----~~~--------~~~i~a~~vVgADG~~S 168 (502)
T PRK06184 103 PLMVPQWRTERILRERLAELGHRVEFGCELVGFEQD-ADGVT-ARVAG----PAG--------EETVRARYLVGADGGRS 168 (502)
T ss_pred ceecCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEEc-CCcEE-EEEEe----CCC--------eEEEEeCEEEECCCCch
Confidence 578999999999999999999999999999999875 44443 33321 001 36899999999999999
Q ss_pred hhhHHHh
Q psy9487 92 HLTKSLS 98 (101)
Q Consensus 92 ~l~~~l~ 98 (101)
.+.++|-
T Consensus 169 ~vR~~lg 175 (502)
T PRK06184 169 FVRKALG 175 (502)
T ss_pred HHHHhCC
Confidence 9988763
No 44
>PRK07190 hypothetical protein; Provisional
Probab=98.40 E-value=1.7e-06 Score=69.81 Aligned_cols=70 Identities=11% Similarity=0.218 Sum_probs=57.8
Q ss_pred cEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCc
Q psy9487 12 NYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG 91 (101)
Q Consensus 12 ~~~v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s 91 (101)
.+.+.+..+.+.|.+++++.|++++.+++|+++..+ ++.+. +.+.+ |.+++|+.||.|||++|
T Consensus 103 ~~~~~q~~le~~L~~~~~~~Gv~v~~~~~v~~l~~~-~~~v~-v~~~~---------------g~~v~a~~vVgADG~~S 165 (487)
T PRK07190 103 FLMLGQSYVEKLLDDKLKEAGAAVKRNTSVVNIELN-QAGCL-TTLSN---------------GERIQSRYVIGADGSRS 165 (487)
T ss_pred eEecCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEc-CCeeE-EEECC---------------CcEEEeCEEEECCCCCH
Confidence 467889999999999999999999999999999886 34333 33322 35799999999999999
Q ss_pred hhhHHHh
Q psy9487 92 HLTKSLS 98 (101)
Q Consensus 92 ~l~~~l~ 98 (101)
.+.+++.
T Consensus 166 ~vR~~lg 172 (487)
T PRK07190 166 FVRNHFN 172 (487)
T ss_pred HHHHHcC
Confidence 9988764
No 45
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=98.37 E-value=3.3e-06 Score=66.97 Aligned_cols=69 Identities=28% Similarity=0.369 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchhhHHH
Q psy9487 18 GHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLTKSL 97 (101)
Q Consensus 18 ~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l~~~l 97 (101)
..+.++|.+++++.|++|+++++|++++.+ +++|+||.+.+ .+++ ...++|+.||+|+|.++.....+
T Consensus 131 ~~l~~~l~~~~~~~gv~i~~~t~v~~l~~~-~g~v~gv~~~~----~~g~-------~~~i~a~~VIlAtGg~~~n~~~~ 198 (466)
T PRK08274 131 KALVNALYRSAERLGVEIRYDAPVTALELD-DGRFVGARAGS----AAGG-------AERIRAKAVVLAAGGFESNREWL 198 (466)
T ss_pred HHHHHHHHHHHHHCCCEEEcCCEEEEEEec-CCeEEEEEEEc----cCCc-------eEEEECCEEEECCCCCCCCHHHH
Confidence 467788999999999999999999999985 78999998742 2222 25799999999999988765444
Q ss_pred h
Q psy9487 98 S 98 (101)
Q Consensus 98 ~ 98 (101)
.
T Consensus 199 ~ 199 (466)
T PRK08274 199 R 199 (466)
T ss_pred H
Confidence 3
No 46
>PLN02661 Putative thiazole synthesis
Probab=98.37 E-value=5.7e-06 Score=65.27 Aligned_cols=93 Identities=19% Similarity=0.302 Sum_probs=63.2
Q ss_pred CCCCCCCCCcEEEEh--HHHHHHHHHHHHH-CCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEE
Q psy9487 3 FGMPMNNHGNYVVRL--GHVVKWLGEQAEA-MGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELH 79 (101)
Q Consensus 3 ~~~~~~~~~~~~v~r--~~~d~~l~~~A~~-~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~ 79 (101)
+|.+++.+++|.+.+ ..+.+.|.+++.+ .|++++.++.|.+++.+ +++|.||.++..-...++.+.....| ..|+
T Consensus 155 lGV~fd~~dgy~vv~ha~e~~stLi~ka~~~~gVkI~~~t~V~DLI~~-~grVaGVVvnw~~v~~~~~~~s~~dp-~~I~ 232 (357)
T PLN02661 155 LGVPYDEQENYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVK-GDRVGGVVTNWALVAQNHDTQSCMDP-NVME 232 (357)
T ss_pred cCCCcccCCCeeEecchHHHHHHHHHHHHhcCCCEEEeCeEeeeEEec-CCEEEEEEeecchhhhccCCCCccce-eEEE
Confidence 467777777776653 3445667777765 79999999999999996 78999999753211112111000111 4699
Q ss_pred ccEEEEeecCCchhhHHH
Q psy9487 80 AKVTIFAEGCHGHLTKSL 97 (101)
Q Consensus 80 A~~VI~A~G~~s~l~~~l 97 (101)
|+.||+|+|..+++...+
T Consensus 233 AkaVVlATGh~g~~ga~~ 250 (357)
T PLN02661 233 AKVVVSSCGHDGPFGATG 250 (357)
T ss_pred CCEEEEcCCCCCcchhhh
Confidence 999999999888665443
No 47
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.36 E-value=2.7e-06 Score=65.87 Aligned_cols=73 Identities=15% Similarity=0.226 Sum_probs=55.9
Q ss_pred cEEEEhHHHHHHHHHHHHHC-CCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCC
Q psy9487 12 NYVVRLGHVVKWLGEQAEAM-GVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH 90 (101)
Q Consensus 12 ~~~v~r~~~d~~l~~~A~~~-Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~ 90 (101)
+|+..+..|.+.|.+++.+. |++++.+++++++..+ ++.+ .|.+.+ +++ ..+++|++||.|||.+
T Consensus 115 ~~~~~~~~l~~~L~~~~~~~~~v~i~~~~~v~~v~~~-~~~~-~v~~~~-----~~~-------~~~i~adlvIgADG~~ 180 (415)
T PRK07364 115 GYVGEHQVLLEALQEFLQSCPNITWLCPAEVVSVEYQ-QDAA-TVTLEI-----EGK-------QQTLQSKLVVAADGAR 180 (415)
T ss_pred EEEEecHHHHHHHHHHHhcCCCcEEEcCCeeEEEEec-CCee-EEEEcc-----CCc-------ceEEeeeEEEEeCCCC
Confidence 57777678999999998886 7999999999999875 4433 355432 111 1479999999999999
Q ss_pred chhhHHHh
Q psy9487 91 GHLTKSLS 98 (101)
Q Consensus 91 s~l~~~l~ 98 (101)
|.+++++.
T Consensus 181 S~vR~~~~ 188 (415)
T PRK07364 181 SPIRQAAG 188 (415)
T ss_pred chhHHHhC
Confidence 99987763
No 48
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.36 E-value=3e-06 Score=65.19 Aligned_cols=69 Identities=17% Similarity=0.185 Sum_probs=56.2
Q ss_pred cEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCc
Q psy9487 12 NYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG 91 (101)
Q Consensus 12 ~~~v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s 91 (101)
+|.+.+..+.+.|.+++++.+...+.+++|+++..+ ++.+. |.+.+ +.++.|++||+|||.+|
T Consensus 105 g~~i~~~~l~~~L~~~~~~~~~~~~~~~~v~~i~~~-~~~~~-v~~~~---------------g~~~~a~~vI~AdG~~S 167 (388)
T PRK07494 105 GYNIPNWLLNRALEARVAELPNITRFGDEAESVRPR-EDEVT-VTLAD---------------GTTLSARLVVGADGRNS 167 (388)
T ss_pred EEEeEhHHHHHHHHHHHhcCCCcEEECCeeEEEEEc-CCeEE-EEECC---------------CCEEEEeEEEEecCCCc
Confidence 799999999999999999876444889999999875 44443 55543 45799999999999999
Q ss_pred hhhHHH
Q psy9487 92 HLTKSL 97 (101)
Q Consensus 92 ~l~~~l 97 (101)
.+.+++
T Consensus 168 ~vr~~~ 173 (388)
T PRK07494 168 PVREAA 173 (388)
T ss_pred hhHHhc
Confidence 997765
No 49
>PRK12839 hypothetical protein; Provisional
Probab=98.34 E-value=4.6e-06 Score=68.74 Aligned_cols=72 Identities=19% Similarity=0.288 Sum_probs=56.5
Q ss_pred cEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEc-cEEEEeecCC
Q psy9487 12 NYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHA-KVTIFAEGCH 90 (101)
Q Consensus 12 ~~~v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A-~~VI~A~G~~ 90 (101)
...+.-..|...|+++|++.|++|+.+++|++++.+++++|+||...+ .+++ ..+.+ +.||+|+|.+
T Consensus 208 ~~~~~g~~l~~~L~~~a~~~Gv~i~~~t~v~~Li~~~~g~V~GV~~~~----~~g~--------~~i~aak~VVLAtGGf 275 (572)
T PRK12839 208 MQLVNGTALTGRLLRSADDLGVDLRVSTSATSLTTDKNGRVTGVRVQG----PDGA--------VTVEATRGVVLATGGF 275 (572)
T ss_pred cccccHHHHHHHHHHHHHHCCCEEEcCCEEEEEEECCCCcEEEEEEEe----CCCc--------EEEEeCCEEEEcCCCc
Confidence 334456678888999999999999999999999986578999998754 2232 34444 8999999999
Q ss_pred chhhH
Q psy9487 91 GHLTK 95 (101)
Q Consensus 91 s~l~~ 95 (101)
+....
T Consensus 276 ~~n~~ 280 (572)
T PRK12839 276 PNDVD 280 (572)
T ss_pred ccCHH
Confidence 98644
No 50
>PRK06126 hypothetical protein; Provisional
Probab=98.33 E-value=3.1e-06 Score=68.42 Aligned_cols=75 Identities=19% Similarity=0.216 Sum_probs=58.7
Q ss_pred cEEEEhHHHHHHHHHHHHHC-CCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCC
Q psy9487 12 NYVVRLGHVVKWLGEQAEAM-GVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH 90 (101)
Q Consensus 12 ~~~v~r~~~d~~l~~~A~~~-Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~ 90 (101)
.+.+.+..|.+.|.+.+++. |++|+.++.++++..+ ++.|. +.+.+ ..+|+. .+++|++||.|||++
T Consensus 120 ~~~i~q~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~-~~~v~-v~~~~---~~~g~~-------~~i~ad~vVgADG~~ 187 (545)
T PRK06126 120 PHRIPQKYLEPILLEHAAAQPGVTLRYGHRLTDFEQD-ADGVT-ATVED---LDGGES-------LTIRADYLVGCDGAR 187 (545)
T ss_pred cccCCHHHHHHHHHHHHHhCCCceEEeccEEEEEEEC-CCeEE-EEEEE---CCCCcE-------EEEEEEEEEecCCcc
Confidence 57789999999999999875 8999999999999885 44444 44432 122321 579999999999999
Q ss_pred chhhHHHh
Q psy9487 91 GHLTKSLS 98 (101)
Q Consensus 91 s~l~~~l~ 98 (101)
|.+.++|.
T Consensus 188 S~VR~~lg 195 (545)
T PRK06126 188 SAVRRSLG 195 (545)
T ss_pred hHHHHhcC
Confidence 99988764
No 51
>PRK06996 hypothetical protein; Provisional
Probab=98.32 E-value=4.6e-06 Score=64.92 Aligned_cols=72 Identities=25% Similarity=0.303 Sum_probs=54.5
Q ss_pred CcEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCC
Q psy9487 11 GNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH 90 (101)
Q Consensus 11 ~~~~v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~ 90 (101)
.+|+++|..|++.|.+++++.|++++.+++++++..+ +..+ -+...+ .+| +..++|++||.|||..
T Consensus 108 ~g~~v~r~~l~~~L~~~~~~~g~~~~~~~~v~~~~~~-~~~v-~v~~~~----~~g--------~~~i~a~lvIgADG~~ 173 (398)
T PRK06996 108 LGYVVRYGSLVAALARAVRGTPVRWLTSTTAHAPAQD-ADGV-TLALGT----PQG--------ARTLRARIAVQAEGGL 173 (398)
T ss_pred CEEEEEhHHHHHHHHHHHHhCCCEEEcCCeeeeeeec-CCeE-EEEECC----CCc--------ceEEeeeEEEECCCCC
Confidence 3799999999999999999999999999999999654 2222 244332 111 1579999999999974
Q ss_pred -chhhHH
Q psy9487 91 -GHLTKS 96 (101)
Q Consensus 91 -s~l~~~ 96 (101)
|.+.+.
T Consensus 174 ~s~~r~~ 180 (398)
T PRK06996 174 FHDQKAD 180 (398)
T ss_pred chHHHHH
Confidence 555444
No 52
>PRK06834 hypothetical protein; Provisional
Probab=98.32 E-value=3.1e-06 Score=68.28 Aligned_cols=71 Identities=23% Similarity=0.325 Sum_probs=58.5
Q ss_pred CcEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCC
Q psy9487 11 GNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH 90 (101)
Q Consensus 11 ~~~~v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~ 90 (101)
.++.+.+..+.+.|.+.+++.|++|+.+++++++..+ ++.+ .|.+.+ |.+++|+.||.|||++
T Consensus 93 ~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~v~~~-~~~v-~v~~~~---------------g~~i~a~~vVgADG~~ 155 (488)
T PRK06834 93 YGLALWQNHIERILAEWVGELGVPIYRGREVTGFAQD-DTGV-DVELSD---------------GRTLRAQYLVGCDGGR 155 (488)
T ss_pred ccccccHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEc-CCeE-EEEECC---------------CCEEEeCEEEEecCCC
Confidence 3678899999999999999999999999999999885 4433 244432 3579999999999999
Q ss_pred chhhHHHh
Q psy9487 91 GHLTKSLS 98 (101)
Q Consensus 91 s~l~~~l~ 98 (101)
|.+.+++-
T Consensus 156 S~vR~~lg 163 (488)
T PRK06834 156 SLVRKAAG 163 (488)
T ss_pred CCcHhhcC
Confidence 99877653
No 53
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.31 E-value=3e-06 Score=69.67 Aligned_cols=66 Identities=20% Similarity=0.273 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487 18 GHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL 93 (101)
Q Consensus 18 ~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l 93 (101)
..+-+.|.+++++.|++|++++.+++++.+++|+|+||...+ ..+|+. ..|+|+.||+|+|..+.+
T Consensus 126 ~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~---~~~g~~-------~~i~AkaVVLATGG~~~~ 191 (570)
T PRK05675 126 HALLHTLYQGNLKNGTTFLNEWYAVDLVKNQDGAVVGVIAIC---IETGET-------VYIKSKATVLATGGAGRI 191 (570)
T ss_pred HHHHHHHHHHHhccCCEEEECcEEEEEEEcCCCeEEEEEEEE---cCCCcE-------EEEecCeEEECCCCcccc
Confidence 467788999999999999999999999986578999998754 123432 579999999999998865
No 54
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.30 E-value=3.9e-06 Score=69.12 Aligned_cols=68 Identities=16% Similarity=0.224 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEc-cEEEEeecCCchhhHHH
Q psy9487 19 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHA-KVTIFAEGCHGHLTKSL 97 (101)
Q Consensus 19 ~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A-~~VI~A~G~~s~l~~~l 97 (101)
.+...|.+.+++.|++|+++++|++++.+ +++|+||.... ++. ...|.| +.||+|+|..+.+. +|
T Consensus 218 ~l~~~L~~~~~~~Gv~i~~~t~v~~Li~~-~g~V~GV~~~~-----~g~-------~~~i~a~kaVILAtGGf~~n~-em 283 (564)
T PRK12845 218 ALAAGLFAGVLRAGIPIWTETSLVRLTDD-GGRVTGAVVDH-----RGR-------EVTVTARRGVVLAAGGFDHDM-EM 283 (564)
T ss_pred HHHHHHHHHHHHCCCEEEecCEeeEEEec-CCEEEEEEEEE-----CCc-------EEEEEcCCEEEEecCCccccH-HH
Confidence 45567888899999999999999999975 78999998753 121 146777 58999999999884 44
Q ss_pred hhh
Q psy9487 98 SSR 100 (101)
Q Consensus 98 ~~~ 100 (101)
.++
T Consensus 284 ~~~ 286 (564)
T PRK12845 284 RWK 286 (564)
T ss_pred HHH
Confidence 433
No 55
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.30 E-value=3.8e-06 Score=69.28 Aligned_cols=64 Identities=25% Similarity=0.404 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEcc-EEEEeecCCchhhH
Q psy9487 20 VVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAK-VTIFAEGCHGHLTK 95 (101)
Q Consensus 20 ~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~-~VI~A~G~~s~l~~ 95 (101)
+...|.+.+++.|++|+++++|++|+.|++|+|+||.... ++.. ..|+|+ .||+|+|..+...+
T Consensus 215 ~~~~l~~~~~~~gv~i~~~~~~~~Li~d~~g~V~Gv~~~~-----~~~~-------~~i~a~~aVilAtGGf~~N~e 279 (584)
T PRK12835 215 LVARLRLALKDAGVPLWLDSPMTELITDPDGAVVGAVVER-----EGRT-------LRIGARRGVILATGGFDHDMD 279 (584)
T ss_pred HHHHHHHHHHhCCceEEeCCEEEEEEECCCCcEEEEEEEe-----CCcE-------EEEEeceeEEEecCcccCCHH
Confidence 4445778889999999999999999997578999998753 2221 579997 59999999998743
No 56
>PRK05868 hypothetical protein; Validated
Probab=98.30 E-value=5.3e-06 Score=64.38 Aligned_cols=68 Identities=16% Similarity=0.098 Sum_probs=54.4
Q ss_pred cEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCc
Q psy9487 12 NYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG 91 (101)
Q Consensus 12 ~~~v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s 91 (101)
.+.+.|..|.+.|.+ +...|++++.+++|+++..+ ++. +.|...+ |.+++||+||.|||.+|
T Consensus 99 ~~~i~R~~L~~~l~~-~~~~~v~i~~~~~v~~i~~~-~~~-v~v~~~d---------------g~~~~adlvIgADG~~S 160 (372)
T PRK05868 99 DIELLRDDLVELLYG-ATQPSVEYLFDDSISTLQDD-GDS-VRVTFER---------------AAAREFDLVIGADGLHS 160 (372)
T ss_pred eEEEEHHHHHHHHHH-hccCCcEEEeCCEEEEEEec-CCe-EEEEECC---------------CCeEEeCEEEECCCCCc
Confidence 568889999998654 55679999999999999764 333 3366554 46799999999999999
Q ss_pred hhhHHH
Q psy9487 92 HLTKSL 97 (101)
Q Consensus 92 ~l~~~l 97 (101)
.+++.+
T Consensus 161 ~vR~~~ 166 (372)
T PRK05868 161 NVRRLV 166 (372)
T ss_pred hHHHHh
Confidence 998876
No 57
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=98.30 E-value=4.3e-06 Score=64.88 Aligned_cols=74 Identities=19% Similarity=0.101 Sum_probs=56.7
Q ss_pred cEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCc
Q psy9487 12 NYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG 91 (101)
Q Consensus 12 ~~~v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s 91 (101)
.+++.+..+.+.|++++++.|++++.+++++++.-. ++....|.... +|+. .+++|++||.|||++|
T Consensus 97 ~~~~~~~~l~~~Ll~~a~~~gv~v~~~~~v~~i~~~-~~~~~~V~~~~-----~G~~-------~~i~ad~vVgADG~~S 163 (392)
T PRK08243 97 VTVYGQTEVTRDLMAARLAAGGPIRFEASDVALHDF-DSDRPYVTYEK-----DGEE-------HRLDCDFIAGCDGFHG 163 (392)
T ss_pred EEEeCcHHHHHHHHHHHHhCCCeEEEeeeEEEEEec-CCCceEEEEEc-----CCeE-------EEEEeCEEEECCCCCC
Confidence 356678899999999999999999999999998652 33334465532 2221 4799999999999999
Q ss_pred hhhHHHh
Q psy9487 92 HLTKSLS 98 (101)
Q Consensus 92 ~l~~~l~ 98 (101)
.+++++.
T Consensus 164 ~vR~~~~ 170 (392)
T PRK08243 164 VSRASIP 170 (392)
T ss_pred chhhhcC
Confidence 9988763
No 58
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.28 E-value=4.9e-06 Score=68.22 Aligned_cols=63 Identities=29% Similarity=0.485 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEcc-EEEEeecCCchh
Q psy9487 18 GHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAK-VTIFAEGCHGHL 93 (101)
Q Consensus 18 ~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~-~VI~A~G~~s~l 93 (101)
..+.+.|.+++++.|++|+++++|++++.+ +++|+||.+.. +|+ ...|+|+ .||+|+|..+..
T Consensus 208 ~~l~~~l~~~~~~~gv~i~~~~~v~~Li~~-~g~v~Gv~~~~-----~g~-------~~~i~A~~aVIlAtGG~~~N 271 (557)
T PRK12844 208 AALIGRMLEAALAAGVPLWTNTPLTELIVE-DGRVVGVVVVR-----DGR-------EVLIRARRGVLLASGGFGHN 271 (557)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEe-CCEEEEEEEEE-----CCe-------EEEEEecceEEEecCCccCC
Confidence 456778899999999999999999999986 79999998853 222 1578995 799999999987
No 59
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=98.28 E-value=5.4e-06 Score=66.93 Aligned_cols=69 Identities=23% Similarity=0.250 Sum_probs=57.3
Q ss_pred EEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487 14 VVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL 93 (101)
Q Consensus 14 ~v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l 93 (101)
.++=..+...|++.|++.|++|+++++|+++..+ ++++++|++.+. .+|+ ..+|+|+.||+|+|+|+.-
T Consensus 124 ~vdp~~l~~al~~~A~~~Ga~i~~~t~V~~i~~~-~~~v~gv~v~~~---~~g~-------~~~i~a~~VVnAaG~wa~~ 192 (516)
T TIGR03377 124 TVDPFRLVAANVLDAQEHGARIFTYTKVTGLIRE-GGRVTGVKVEDH---KTGE-------EERIEAQVVINAAGIWAGR 192 (516)
T ss_pred EECHHHHHHHHHHHHHHcCCEEEcCcEEEEEEEE-CCEEEEEEEEEc---CCCc-------EEEEEcCEEEECCCcchHH
Confidence 5677888899999999999999999999999985 788999988541 1222 2579999999999999864
No 60
>PRK06475 salicylate hydroxylase; Provisional
Probab=98.27 E-value=5.2e-06 Score=64.60 Aligned_cols=71 Identities=15% Similarity=0.107 Sum_probs=55.1
Q ss_pred EEEEhHHHHHHHHHHHHH-CCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCc
Q psy9487 13 YVVRLGHVVKWLGEQAEA-MGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG 91 (101)
Q Consensus 13 ~~v~r~~~d~~l~~~A~~-~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s 91 (101)
+.+.|..|.+.|.+++.+ .|++++.+++|+++..+ ++.+ .|...+ .++ +..+.||+||.|||.+|
T Consensus 102 ~~i~r~~l~~~L~~~~~~~~~i~v~~~~~v~~~~~~-~~~v-~v~~~~----~~~--------~~~~~adlvIgADG~~S 167 (400)
T PRK06475 102 IVCHRADLQSALLDACRNNPGIEIKLGAEMTSQRQT-GNSI-TATIIR----TNS--------VETVSAAYLIACDGVWS 167 (400)
T ss_pred eeECHHHHHHHHHHHHHhcCCcEEEECCEEEEEecC-CCce-EEEEEe----CCC--------CcEEecCEEEECCCccH
Confidence 468999999999999977 48999999999999764 4443 244322 011 25799999999999999
Q ss_pred hhhHHH
Q psy9487 92 HLTKSL 97 (101)
Q Consensus 92 ~l~~~l 97 (101)
.+.+++
T Consensus 168 ~vR~~~ 173 (400)
T PRK06475 168 MLRAKA 173 (400)
T ss_pred hHHhhc
Confidence 998775
No 61
>PRK06753 hypothetical protein; Provisional
Probab=98.25 E-value=3.3e-06 Score=64.54 Aligned_cols=69 Identities=17% Similarity=0.236 Sum_probs=55.8
Q ss_pred CcEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCC
Q psy9487 11 GNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH 90 (101)
Q Consensus 11 ~~~~v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~ 90 (101)
.++.++|..|++.|.+.+.. ++|+++++|+++..+ ++.+ .|.+.+ |.++.+++||.|||.+
T Consensus 91 ~~~~i~R~~l~~~L~~~~~~--~~i~~~~~v~~i~~~-~~~v-~v~~~~---------------g~~~~~~~vigadG~~ 151 (373)
T PRK06753 91 LNVTLHRQTLIDIIKSYVKE--DAIFTGKEVTKIENE-TDKV-TIHFAD---------------GESEAFDLCIGADGIH 151 (373)
T ss_pred ccccccHHHHHHHHHHhCCC--ceEEECCEEEEEEec-CCcE-EEEECC---------------CCEEecCEEEECCCcc
Confidence 36889999999999988764 689999999999864 4443 355543 4679999999999999
Q ss_pred chhhHHHh
Q psy9487 91 GHLTKSLS 98 (101)
Q Consensus 91 s~l~~~l~ 98 (101)
|.+++++.
T Consensus 152 S~vR~~~~ 159 (373)
T PRK06753 152 SKVRQSVN 159 (373)
T ss_pred hHHHHHhC
Confidence 99988763
No 62
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=98.24 E-value=8e-06 Score=67.20 Aligned_cols=66 Identities=33% Similarity=0.443 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEc-cEEEEeecCCchhhHH
Q psy9487 18 GHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHA-KVTIFAEGCHGHLTKS 96 (101)
Q Consensus 18 ~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A-~~VI~A~G~~s~l~~~ 96 (101)
..|.+.|.+.|++.||+|+++++|++++.+ +++|+||++... ++ ...|+| +.||+|+|.++.....
T Consensus 217 ~~l~~~L~~~a~~~Gv~i~~~t~v~~l~~~-~g~v~GV~~~~~----~~--------~~~i~a~k~VVlAtGg~~~n~~~ 283 (581)
T PRK06134 217 NALVARLLKSAEDLGVRIWESAPARELLRE-DGRVAGAVVETP----GG--------LQEIRARKGVVLAAGGFPHDPAR 283 (581)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCEEEEEEEe-CCEEEEEEEEEC----Cc--------EEEEEeCCEEEEcCCCcccCHHH
Confidence 456688999999999999999999999986 789999987531 11 146899 9999999999976443
No 63
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=98.24 E-value=5.9e-06 Score=67.85 Aligned_cols=65 Identities=20% Similarity=0.310 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487 18 GHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL 93 (101)
Q Consensus 18 ~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l 93 (101)
..+-+.|.+++++.|++|++++.+++++.+ +|+|+||...+. .+|+. ..|+|+.||+|+|..+.+
T Consensus 119 ~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~-~g~v~Ga~~~~~---~~g~~-------~~i~AkaVILATGG~~~~ 183 (565)
T TIGR01816 119 HAILHTLYQQNLKADTSFFNEYFALDLLME-DGECRGVIAYCL---ETGEI-------HRFRAKAVVLATGGYGRI 183 (565)
T ss_pred HHHHHHHHHHHHhCCCEEEeccEEEEEEee-CCEEEEEEEEEc---CCCcE-------EEEEeCeEEECCCCcccc
Confidence 357788899999999999999999999986 799999987531 23332 579999999999998764
No 64
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=98.24 E-value=5.3e-06 Score=68.91 Aligned_cols=66 Identities=21% Similarity=0.302 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487 18 GHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL 93 (101)
Q Consensus 18 ~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l 93 (101)
..+.+.|.+++++.|++|++++.+++++.+++++|.||...+. .+|+. ..|+|+.||+|+|..+.+
T Consensus 166 ~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~---~~g~~-------~~i~AkaVVLATGG~~~~ 231 (617)
T PTZ00139 166 HAMLHTLYGQSLKYDCNFFIEYFALDLIMDEDGECRGVIAMSM---EDGSI-------HRFRAHYTVIATGGYGRA 231 (617)
T ss_pred HHHHHHHHHHHHhCCCEEEeceEEEEEEECCCCEEEEEEEEEC---CCCeE-------EEEECCcEEEeCCCCccc
Confidence 3778899999999999999999999999844789999987431 23332 579999999999988754
No 65
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=98.24 E-value=1.4e-05 Score=60.13 Aligned_cols=94 Identities=22% Similarity=0.388 Sum_probs=69.9
Q ss_pred CCCCCCCC--CcEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEc
Q psy9487 3 FGMPMNNH--GNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHA 80 (101)
Q Consensus 3 ~~~~~~~~--~~~~v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A 80 (101)
||-+.+.+ |-|+.+-..|..-|+.+|-++|++|+.++.|.++++.++.||.||.++-.-+...+-+ .+=-.|+|
T Consensus 92 ~gI~ye~~e~g~~v~ds~e~~skl~~~a~~aGaki~n~~~veDvi~r~~~rVaGvVvNWt~V~~~~lh----vDPl~i~a 167 (262)
T COG1635 92 FGIRYEEEEDGYYVADSAEFASKLAARALDAGAKIFNGVSVEDVIVRDDPRVAGVVVNWTPVQMAGLH----VDPLTIRA 167 (262)
T ss_pred hCCcceecCCceEEecHHHHHHHHHHHHHhcCceeeecceEEEEEEecCCceEEEEEecchhhhcccc----cCcceeeE
Confidence 45555544 3678888899999999999999999999999999986333899999874222222211 01146999
Q ss_pred cEEEEeecCCchhhHHHhhh
Q psy9487 81 KVTIFAEGCHGHLTKSLSSR 100 (101)
Q Consensus 81 ~~VI~A~G~~s~l~~~l~~~ 100 (101)
++||+|+|-.+.+.+.+-+|
T Consensus 168 ~~VvDaTGHda~v~~~~~kr 187 (262)
T COG1635 168 KAVVDATGHDAEVVSFLAKR 187 (262)
T ss_pred EEEEeCCCCchHHHHHHHHh
Confidence 99999999999887666543
No 66
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=98.23 E-value=6.7e-06 Score=67.62 Aligned_cols=69 Identities=19% Similarity=0.201 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEc-cEEEEeecCCchhhHH
Q psy9487 18 GHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHA-KVTIFAEGCHGHLTKS 96 (101)
Q Consensus 18 ~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A-~~VI~A~G~~s~l~~~ 96 (101)
..+.+.|.+++++.|++|+++++|++++.+ +++|+||.+.. +++ ...|.| +.||+|+|..+.+. +
T Consensus 221 ~~l~~aL~~~~~~~Gv~i~~~t~v~~Li~~-~g~V~GV~~~~-----~g~-------~~~i~A~~~VVlAtGg~~~n~-e 286 (578)
T PRK12843 221 NALIGRLLYSLRARGVRILTQTDVESLETD-HGRVIGATVVQ-----GGV-------RRRIRARGGVVLATGGFNRHP-Q 286 (578)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEee-CCEEEEEEEec-----CCe-------EEEEEccceEEECCCCcccCH-H
Confidence 357778899999999999999999999985 79999998853 121 146886 68999999999984 4
Q ss_pred Hhhh
Q psy9487 97 LSSR 100 (101)
Q Consensus 97 l~~~ 100 (101)
|.++
T Consensus 287 m~~~ 290 (578)
T PRK12843 287 LRRE 290 (578)
T ss_pred HHHH
Confidence 4443
No 67
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=98.22 E-value=7e-06 Score=67.12 Aligned_cols=69 Identities=22% Similarity=0.214 Sum_probs=56.4
Q ss_pred EEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487 14 VVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL 93 (101)
Q Consensus 14 ~v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l 93 (101)
.++=..+...++..|++.|++++++++|+++..+ +++++||++.+. .+++ +.+|+|+.||+|+|+|+.-
T Consensus 145 ~vdp~rl~~al~~~A~~~Ga~i~~~t~V~~i~~~-~~~v~gv~v~d~---~~g~-------~~~i~A~~VVnAaG~wa~~ 213 (546)
T PRK11101 145 TVDPFRLTAANMLDAKEHGAQILTYHEVTGLIRE-GDTVCGVRVRDH---LTGE-------TQEIHAPVVVNAAGIWGQH 213 (546)
T ss_pred EECHHHHHHHHHHHHHhCCCEEEeccEEEEEEEc-CCeEEEEEEEEc---CCCc-------EEEEECCEEEECCChhHHH
Confidence 4677788888899999999999999999999885 789999998541 1222 2579999999999999853
No 68
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=98.22 E-value=9.7e-06 Score=63.90 Aligned_cols=66 Identities=26% Similarity=0.270 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHCCCEEecCCceeEEEEec-CCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchhhHH
Q psy9487 18 GHVVKWLGEQAEAMGVEIYPGIPASEVLYHG-DGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLTKS 96 (101)
Q Consensus 18 ~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~-~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l~~~ 96 (101)
..+.+.|.+++++.|++|+++++|++++.++ +++|+||.+.+. +..++|+.||+|+|..+.+...
T Consensus 123 ~~l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~~--------------~~~i~ak~VIlAtGG~~~n~~~ 188 (432)
T TIGR02485 123 KALTNALYSSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTVG--------------THRITTQALVLAAGGLGANRDW 188 (432)
T ss_pred HHHHHHHHHHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEEcCC--------------cEEEEcCEEEEcCCCcccCHHH
Confidence 4577888999999999999999999998853 578999886420 2579999999999998887543
Q ss_pred H
Q psy9487 97 L 97 (101)
Q Consensus 97 l 97 (101)
+
T Consensus 189 ~ 189 (432)
T TIGR02485 189 L 189 (432)
T ss_pred H
Confidence 3
No 69
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=98.21 E-value=9.8e-06 Score=65.58 Aligned_cols=64 Identities=14% Similarity=0.236 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchhh
Q psy9487 19 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLT 94 (101)
Q Consensus 19 ~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l~ 94 (101)
.+.+.|.+.+++.|++|+++++|++++.+ +++|+||.+.. .+++ ...|+|+.||+|+|.++...
T Consensus 191 ~l~~~L~~~~~~~gv~i~~~t~v~~l~~~-~g~V~Gv~~~~----~~g~-------~~~i~a~~VVlAtGG~~~n~ 254 (506)
T PRK06481 191 YLVDGLLKNVQERKIPLFVNADVTKITEK-DGKVTGVKVKI----NGKE-------TKTISSKAVVVTTGGFGANK 254 (506)
T ss_pred HHHHHHHHHHHHcCCeEEeCCeeEEEEec-CCEEEEEEEEe----CCCe-------EEEEecCeEEEeCCCcccCH
Confidence 46678899999999999999999999874 78999998753 1222 14799999999999988773
No 70
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=98.19 E-value=6.3e-06 Score=66.77 Aligned_cols=74 Identities=15% Similarity=0.208 Sum_probs=58.0
Q ss_pred cEEEEhHHHHHHHHHHHHHC-CCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCC
Q psy9487 12 NYVVRLGHVVKWLGEQAEAM-GVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH 90 (101)
Q Consensus 12 ~~~v~r~~~d~~l~~~A~~~-Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~ 90 (101)
.+.+.+..+.+.|.+.+.+. |++|+.+++|+++..+ ++.| .|.+.+ .+|+. .+++|++||.|||++
T Consensus 107 ~~~~~q~~le~~L~~~~~~~~gv~v~~g~~v~~i~~~-~~~v-~v~~~~----~~G~~-------~~i~ad~vVgADG~~ 173 (538)
T PRK06183 107 RNAFHQPLLEAVLRAGLARFPHVRVRFGHEVTALTQD-DDGV-TVTLTD----ADGQR-------ETVRARYVVGCDGAN 173 (538)
T ss_pred hccCChHHHHHHHHHHHHhCCCcEEEcCCEEEEEEEc-CCeE-EEEEEc----CCCCE-------EEEEEEEEEecCCCc
Confidence 36788999999999999885 9999999999999875 3443 355432 13321 589999999999999
Q ss_pred chhhHHHh
Q psy9487 91 GHLTKSLS 98 (101)
Q Consensus 91 s~l~~~l~ 98 (101)
|.+.++|.
T Consensus 174 S~vR~~lg 181 (538)
T PRK06183 174 SFVRRTLG 181 (538)
T ss_pred hhHHHHcC
Confidence 99988764
No 71
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=98.18 E-value=9.9e-06 Score=62.74 Aligned_cols=61 Identities=23% Similarity=0.313 Sum_probs=51.7
Q ss_pred EEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCch
Q psy9487 15 VRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH 92 (101)
Q Consensus 15 v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~ 92 (101)
++=..+.+.|++.+++.|++|+++++|+++..+ ++++++|++.+ .+++|+.||+|+|+|+.
T Consensus 198 ~~p~~~~~~l~~~~~~~G~~i~~~~~V~~i~~~-~~~~~~v~t~~----------------~~~~a~~VV~a~G~~~~ 258 (416)
T PRK00711 198 GDCQLFTQRLAAMAEQLGVKFRFNTPVDGLLVE-GGRITGVQTGG----------------GVITADAYVVALGSYST 258 (416)
T ss_pred CCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEec-CCEEEEEEeCC----------------cEEeCCEEEECCCcchH
Confidence 345578889999999999999999999999875 67777787753 47999999999999984
No 72
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=98.18 E-value=3.5e-07 Score=72.51 Aligned_cols=71 Identities=27% Similarity=0.327 Sum_probs=0.0
Q ss_pred EEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCch
Q psy9487 13 YVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH 92 (101)
Q Consensus 13 ~~v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~ 92 (101)
+.+++..+..+|.+.+++.|++|++++.|.+++.+ +++|++|.+.++ +| ..+|+|++||+|+| .+.
T Consensus 85 ~~~~~~~~~~~l~~~l~e~gv~v~~~t~v~~v~~~-~~~i~~V~~~~~----~g--------~~~i~A~~~IDaTG-~g~ 150 (428)
T PF12831_consen 85 VPFDPEVFKAVLDEMLAEAGVEVLLGTRVVDVIRD-GGRITGVIVETK----SG--------RKEIRAKVFIDATG-DGD 150 (428)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccc-cccccccccccc----cc--------cccccccccccccc-ccc
Confidence 57889999999999999999999999999999996 789999999862 23 26899999999999 455
Q ss_pred hhHHH
Q psy9487 93 LTKSL 97 (101)
Q Consensus 93 l~~~l 97 (101)
|+...
T Consensus 151 l~~~a 155 (428)
T PF12831_consen 151 LAALA 155 (428)
T ss_dssp -----
T ss_pred ccccc
Confidence 55443
No 73
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=98.17 E-value=1.4e-05 Score=62.10 Aligned_cols=63 Identities=22% Similarity=0.199 Sum_probs=52.3
Q ss_pred EEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487 15 VRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL 93 (101)
Q Consensus 15 v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l 93 (101)
++-..+.+.|++.|++.|++++++++|+++..++++++.+|++.+ ..+.|+.||+|+|.|+..
T Consensus 180 v~p~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~~~v~t~~----------------g~i~a~~vVvaagg~~~~ 242 (407)
T TIGR01373 180 ARHDAVAWGYARGADRRGVDIIQNCEVTGFIRRDGGRVIGVETTR----------------GFIGAKKVGVAVAGHSSV 242 (407)
T ss_pred CCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEeCC----------------ceEECCEEEECCChhhHH
Confidence 355677788999999999999999999999764357888888865 369999999998888754
No 74
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.17 E-value=9.5e-06 Score=67.04 Aligned_cols=66 Identities=21% Similarity=0.290 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487 18 GHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL 93 (101)
Q Consensus 18 ~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l 93 (101)
..+-..|.+++++.|+++++++.+++++.+++|+|+||...+. .+|+. ..|+|+.||+|+|..+.+
T Consensus 143 ~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~---~~g~~-------~~i~AkaVILATGG~~~~ 208 (588)
T PRK08958 143 HALLHTLYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTAICI---ETGEV-------VYFKARATVLATGGAGRI 208 (588)
T ss_pred HHHHHHHHHHhhhcCCEEEeCcEEEEEEECCCCEEEEEEEEEc---CCCcE-------EEEEcCeEEECCCCcccc
Confidence 4577788999999999999999999999854789999987531 23332 579999999999998865
No 75
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.16 E-value=9e-06 Score=67.22 Aligned_cols=65 Identities=18% Similarity=0.316 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487 19 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL 93 (101)
Q Consensus 19 ~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l 93 (101)
.+.+.|.+++++.|++|++++.+++++.+++++|+||...+ .++|+. ..|.|+.||+|+|..+.+
T Consensus 150 ~i~~~L~~~~~~~gi~i~~~~~v~~Li~~~~g~v~Gv~~~~---~~~g~~-------~~i~AkaVVLATGG~~~~ 214 (598)
T PRK09078 150 AILHTLYQQSLKHNAEFFIEYFALDLIMDDGGVCRGVVAWN---LDDGTL-------HRFRAHMVVLATGGYGRA 214 (598)
T ss_pred HHHHHHHHHHhhcCCEEEEeEEEEEEEEcCCCEEEEEEEEE---CCCCcE-------EEEEcCEEEECCCCCccc
Confidence 57788999999999999999999999986447999998743 123332 589999999999998754
No 76
>PRK08275 putative oxidoreductase; Provisional
Probab=98.16 E-value=1.2e-05 Score=65.77 Aligned_cols=65 Identities=31% Similarity=0.353 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487 19 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL 93 (101)
Q Consensus 19 ~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l 93 (101)
.+.++|.+++++.|++|++++.|++++.+++++|.||.+.+. .+|+. ..++|+.||+|+|..+.+
T Consensus 138 ~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~g~v~Gv~~~~~---~~g~~-------~~i~Ak~VIlATGG~~~~ 202 (554)
T PRK08275 138 DIKKVLYRQLKRARVLITNRIMATRLLTDADGRVAGALGFDC---RTGEF-------LVIRAKAVILCCGAAGRL 202 (554)
T ss_pred HHHHHHHHHHHHCCCEEEcceEEEEEEEcCCCeEEEEEEEec---CCCcE-------EEEECCEEEECCCCcccc
Confidence 578899999999999999999999999854689999987531 12322 469999999999998765
No 77
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=98.15 E-value=1.2e-05 Score=65.56 Aligned_cols=64 Identities=28% Similarity=0.446 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487 19 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL 93 (101)
Q Consensus 19 ~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l 93 (101)
.+.+.|.+++++.|+++++++.+++++.+ +++|+||...+. .+|+. ..++|+.||+|+|..+.+
T Consensus 130 ~i~~~L~~~~~~~gv~i~~~~~v~~L~~~-~g~v~Gv~~~~~---~~g~~-------~~i~Ak~VVlAtGG~~~~ 193 (566)
T TIGR01812 130 ALLHTLYEQCLKLGVSFFNEYFALDLIHD-DGRVRGVVAYDL---KTGEI-------VFFRAKAVVLATGGYGRI 193 (566)
T ss_pred HHHHHHHHHHHHcCCEEEeccEEEEEEEe-CCEEEEEEEEEC---CCCcE-------EEEECCeEEECCCcccCC
Confidence 56678899999999999999999999986 799999987531 12321 479999999999998865
No 78
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=98.15 E-value=9.7e-06 Score=67.68 Aligned_cols=66 Identities=23% Similarity=0.333 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487 18 GHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL 93 (101)
Q Consensus 18 ~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l 93 (101)
..+.+.|.+++++.|++|++++.+++++.+++++|+||.+.+. .+|+. ..|.|+.||+|+|..+.+
T Consensus 187 ~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~---~~g~~-------~~i~AkaVILATGG~g~~ 252 (635)
T PLN00128 187 HAMLHTLYGQAMKHNTQFFVEYFALDLIMDSDGACQGVIALNM---EDGTL-------HRFRAHSTILATGGYGRA 252 (635)
T ss_pred HHHHHHHHHHHHhCCCEEEEeeEEEEEEEcCCCEEEEEEEEEc---CCCeE-------EEEEcCeEEECCCCCccc
Confidence 4577889999999999999999999999854689999987541 23432 579999999999998765
No 79
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=98.14 E-value=1.8e-05 Score=65.92 Aligned_cols=70 Identities=17% Similarity=0.158 Sum_probs=56.4
Q ss_pred EEhHHHHHHHHHHHHHCCCEEecCCceeEEEEec-CCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487 15 VRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHG-DGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL 93 (101)
Q Consensus 15 v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~-~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l 93 (101)
++=..+...|++.|++.|++|+.+++|+++..++ ++++++|++.+. .+++ ..+|+|+.||+|+|+|+.-
T Consensus 229 vdp~rl~~al~~~A~~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~---~tg~-------~~~i~a~~VVnAaGaws~~ 298 (627)
T PLN02464 229 MNDSRLNVALACTAALAGAAVLNYAEVVSLIKDESTGRIVGARVRDN---LTGK-------EFDVYAKVVVNAAGPFCDE 298 (627)
T ss_pred EcHHHHHHHHHHHHHhCCcEEEeccEEEEEEEecCCCcEEEEEEEEC---CCCc-------EEEEEeCEEEECCCHhHHH
Confidence 4778899999999999999999999999998853 478999887541 1121 1379999999999999864
Q ss_pred h
Q psy9487 94 T 94 (101)
Q Consensus 94 ~ 94 (101)
-
T Consensus 299 l 299 (627)
T PLN02464 299 V 299 (627)
T ss_pred H
Confidence 3
No 80
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=98.13 E-value=1.6e-05 Score=63.36 Aligned_cols=61 Identities=25% Similarity=0.389 Sum_probs=52.0
Q ss_pred cEEEEhHHHHHHHHHHHHH-CCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecC
Q psy9487 12 NYVVRLGHVVKWLGEQAEA-MGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGC 89 (101)
Q Consensus 12 ~~~v~r~~~d~~l~~~A~~-~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~ 89 (101)
-+.++|..|.+|+.+.+++ -+++|+. ..|++|..+ +++|.||++.+ |.+++|+.||+|+|.
T Consensus 89 r~qvDr~~y~~~~~~~l~~~~nl~i~~-~~V~~l~~e-~~~v~GV~~~~---------------g~~~~a~~vVlaTGt 150 (392)
T PF01134_consen 89 RAQVDRDKYSRAMREKLESHPNLTIIQ-GEVTDLIVE-NGKVKGVVTKD---------------GEEIEADAVVLATGT 150 (392)
T ss_dssp EEEE-HHHHHHHHHHHHHTSTTEEEEE-S-EEEEEEC-TTEEEEEEETT---------------SEEEEECEEEE-TTT
T ss_pred HhhccHHHHHHHHHHHHhcCCCeEEEE-cccceEEec-CCeEEEEEeCC---------------CCEEecCEEEEeccc
Confidence 4699999999999999988 6788875 689999995 89999999976 689999999999998
No 81
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.13 E-value=1.2e-05 Score=66.35 Aligned_cols=66 Identities=26% Similarity=0.380 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487 18 GHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL 93 (101)
Q Consensus 18 ~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l 93 (101)
..|.+.|.+++++.|+++++++.+++++.+++++|.||.+.+. .+|+. ..++|+.||+|+|..+.+
T Consensus 148 ~~l~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~---~~g~~-------~~i~AkaVILATGG~~~~ 213 (591)
T PRK07057 148 HALLHTLYQQNVAAKTQFFVEWMALDLIRDADGDVLGVTALEM---ETGDV-------YILEAKTTLFATGGAGRI 213 (591)
T ss_pred HHHHHHHHHHHHhcCCEEEeCcEEEEEEEcCCCeEEEEEEEEc---CCCeE-------EEEECCeEEECCCCcccc
Confidence 4688899999999999999999999999864689999987541 12321 478999999999998865
No 82
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=98.13 E-value=1.1e-05 Score=64.64 Aligned_cols=61 Identities=18% Similarity=0.261 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchhh
Q psy9487 18 GHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLT 94 (101)
Q Consensus 18 ~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l~ 94 (101)
..+.+.|.+.+++.|++|+++++|.+|..+ ++++.+|++.+ |.++.|+.||.|.|++..+.
T Consensus 229 ~~l~~~L~~~~~~~G~~i~~~~~V~~I~~~-~~~~~gv~~~~---------------g~~~~ad~vV~a~~~~~~~~ 289 (493)
T TIGR02730 229 GQIAESLVKGLEKHGGQIRYRARVTKIILE-NGKAVGVKLAD---------------GEKIYAKRIVSNATRWDTFG 289 (493)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCeeeEEEec-CCcEEEEEeCC---------------CCEEEcCEEEECCChHHHHH
Confidence 567788999999999999999999999985 78999999865 46799999999999987764
No 83
>PLN02697 lycopene epsilon cyclase
Probab=98.12 E-value=1.4e-05 Score=65.63 Aligned_cols=62 Identities=15% Similarity=0.129 Sum_probs=49.9
Q ss_pred EEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCch
Q psy9487 14 VVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH 92 (101)
Q Consensus 14 ~v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~ 92 (101)
.++|..|+++|++++.+.|+++ .++.|+++..+ ++.+..+...+ |.++.|++||+|+|++|.
T Consensus 188 ~V~R~~L~~~Ll~~a~~~GV~~-~~~~V~~I~~~-~~~~~vv~~~d---------------G~~i~A~lVI~AdG~~S~ 249 (529)
T PLN02697 188 RVSRTLLHEELLRRCVESGVSY-LSSKVDRITEA-SDGLRLVACED---------------GRVIPCRLATVASGAASG 249 (529)
T ss_pred EEcHHHHHHHHHHHHHhcCCEE-EeeEEEEEEEc-CCcEEEEEEcC---------------CcEEECCEEEECCCcChh
Confidence 4999999999999999999998 56799998764 44444344333 468999999999999993
No 84
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=98.11 E-value=1.4e-05 Score=64.14 Aligned_cols=66 Identities=20% Similarity=0.260 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCC-ch-hhH
Q psy9487 18 GHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH-GH-LTK 95 (101)
Q Consensus 18 ~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~-s~-l~~ 95 (101)
.++.+.|.+.++++|++++.+++|.++..+ ++++.+|.+.+.+ + ..++|+.||+|+|+| |. |.+
T Consensus 263 ~RL~~aL~~~~~~~Gg~il~g~~V~~i~~~-~~~v~~V~t~~g~-----~--------~~l~AD~vVLAaGaw~S~gL~a 328 (419)
T TIGR03378 263 IRLEEALKHRFEQLGGVMLPGDRVLRAEFE-GNRVTRIHTRNHR-----D--------IPLRADHFVLASGSFFSNGLVA 328 (419)
T ss_pred HHHHHHHHHHHHHCCCEEEECcEEEEEEee-CCeEEEEEecCCc-----c--------ceEECCEEEEccCCCcCHHHHh
Confidence 456777899999999999999999999985 7889988875410 1 479999999999999 43 555
Q ss_pred HH
Q psy9487 96 SL 97 (101)
Q Consensus 96 ~l 97 (101)
++
T Consensus 329 ~l 330 (419)
T TIGR03378 329 EF 330 (419)
T ss_pred hc
Confidence 44
No 85
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.10 E-value=1.6e-05 Score=65.32 Aligned_cols=64 Identities=22% Similarity=0.340 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487 19 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL 93 (101)
Q Consensus 19 ~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l 93 (101)
.+.+.|.+++++.|++|++++.+++++.+ +|+|+||.+.+. .+++. ..++|+.||+|+|..+.+
T Consensus 137 ~i~~~L~~~~~~~gv~i~~~~~~~~Li~~-~g~v~Gv~~~~~---~~g~~-------~~i~AkaVVLATGG~~~l 200 (566)
T PRK06452 137 ALLHTLFERTSGLNVDFYNEWFSLDLVTD-NKKVVGIVAMQM---KTLTP-------FFFKTKAVVLATGGMGML 200 (566)
T ss_pred HHHHHHHHHHHhCCCEEEeCcEEEEEEEE-CCEEEEEEEEEC---CCCeE-------EEEEeCeEEECCCccccc
Confidence 46667888999999999999999999996 799999988651 12222 479999999999998854
No 86
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=98.10 E-value=2.4e-05 Score=60.19 Aligned_cols=65 Identities=15% Similarity=0.054 Sum_probs=52.2
Q ss_pred cEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCc
Q psy9487 12 NYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG 91 (101)
Q Consensus 12 ~~~v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s 91 (101)
...++|..|++.|.+++++.|++++. ..|.++..+ ++..+.|.+.+ |.+++|+.||+|+|.+|
T Consensus 79 ~~~i~~~~l~~~l~~~~~~~gv~~~~-~~v~~i~~~-~~~~~~v~~~~---------------g~~~~a~~VI~A~G~~s 141 (388)
T TIGR01790 79 YGSVDSTRLHEELLQKCPEGGVLWLE-RKAIHAEAD-GVALSTVYCAG---------------GQRIQARLVIDARGFGP 141 (388)
T ss_pred eeEEcHHHHHHHHHHHHHhcCcEEEc-cEEEEEEec-CCceeEEEeCC---------------CCEEEeCEEEECCCCch
Confidence 34699999999999999999999975 478888764 35556676654 45899999999999998
Q ss_pred hh
Q psy9487 92 HL 93 (101)
Q Consensus 92 ~l 93 (101)
.+
T Consensus 142 ~~ 143 (388)
T TIGR01790 142 LV 143 (388)
T ss_pred hc
Confidence 44
No 87
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=98.08 E-value=3.3e-05 Score=63.42 Aligned_cols=70 Identities=26% Similarity=0.358 Sum_probs=55.1
Q ss_pred EEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEcc-EEEEeecCCchh
Q psy9487 15 VRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAK-VTIFAEGCHGHL 93 (101)
Q Consensus 15 v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~-~VI~A~G~~s~l 93 (101)
..-..+...|.+++++.|++|+++++|++++.+ +++|+||.+.+. ++ ...+.++ .||+|+|.++..
T Consensus 211 ~~G~~l~~~L~~~~~~~Gv~i~~~~~v~~l~~~-~g~V~GV~~~~~----~~--------~~~i~a~k~VVlAtGg~~~n 277 (574)
T PRK12842 211 TSGNALAARLAKSALDLGIPILTGTPARELLTE-GGRVVGARVIDA----GG--------ERRITARRGVVLACGGFSHD 277 (574)
T ss_pred ccHHHHHHHHHHHHHhCCCEEEeCCEEEEEEee-CCEEEEEEEEcC----Cc--------eEEEEeCCEEEEcCCCccch
Confidence 344567788899999999999999999999986 789999988641 11 1368885 799999999966
Q ss_pred hHHH
Q psy9487 94 TKSL 97 (101)
Q Consensus 94 ~~~l 97 (101)
...+
T Consensus 278 ~~~~ 281 (574)
T PRK12842 278 LARI 281 (574)
T ss_pred HHHH
Confidence 4433
No 88
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.07 E-value=2e-05 Score=64.92 Aligned_cols=66 Identities=21% Similarity=0.349 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHCCCEEecCCceeEEEEecC---CcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487 18 GHVVKWLGEQAEAMGVEIYPGIPASEVLYHGD---GSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL 93 (101)
Q Consensus 18 ~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~---g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l 93 (101)
..+.+.|.+++++.||+|++++.|++++.+++ ++|+||.+.+. ++++. ..|+|+.||+|+|..+.+
T Consensus 140 ~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~---~~g~~-------~~i~AkaVVLATGG~~~~ 208 (583)
T PRK08205 140 HMILQTLYQNCVKHGVEFFNEFYVLDLLLTETPSGPVAAGVVAYEL---ATGEI-------HVFHAKAVVFATGGSGRV 208 (583)
T ss_pred HHHHHHHHHHHHhcCCEEEeCCEEEEEEecCCccCCcEEEEEEEEc---CCCeE-------EEEEeCeEEECCCCCccc
Confidence 45778899999999999999999999998632 89999987431 22221 468999999999998855
No 89
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.07 E-value=1.4e-05 Score=65.86 Aligned_cols=71 Identities=23% Similarity=0.205 Sum_probs=58.3
Q ss_pred EEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCch
Q psy9487 13 YVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH 92 (101)
Q Consensus 13 ~~v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~ 92 (101)
++++=..|.-.++..|.+.|++++..++|++++.+ ++ |+||++.|. .+|+. .+|+|+.||.|+|+|+-
T Consensus 159 ~~vddaRLv~~~a~~A~~~Ga~il~~~~v~~~~re-~~-v~gV~~~D~---~tg~~-------~~ira~~VVNAaGpW~d 226 (532)
T COG0578 159 GVVDDARLVAANARDAAEHGAEILTYTRVESLRRE-GG-VWGVEVEDR---ETGET-------YEIRARAVVNAAGPWVD 226 (532)
T ss_pred ceechHHHHHHHHHHHHhcccchhhcceeeeeeec-CC-EEEEEEEec---CCCcE-------EEEEcCEEEECCCccHH
Confidence 44555677777899999999999999999999996 66 999999872 23443 78999999999999986
Q ss_pred hhH
Q psy9487 93 LTK 95 (101)
Q Consensus 93 l~~ 95 (101)
--.
T Consensus 227 ~i~ 229 (532)
T COG0578 227 EIL 229 (532)
T ss_pred HHH
Confidence 543
No 90
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=98.07 E-value=2.2e-05 Score=63.71 Aligned_cols=72 Identities=22% Similarity=0.273 Sum_probs=54.7
Q ss_pred EEEEhHHHHHHHHHHHHHC-CCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCc
Q psy9487 13 YVVRLGHVVKWLGEQAEAM-GVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG 91 (101)
Q Consensus 13 ~~v~r~~~d~~l~~~A~~~-Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s 91 (101)
+.+.+..+.++|.+++++. |++++.+++++++..+ ++.+. +.+.+ .++ ..+++|++||.|||++|
T Consensus 120 ~~~~q~~le~~L~~~~~~~~~v~v~~~~~v~~i~~~-~~~v~-v~~~~----~~g--------~~~i~ad~vVgADG~~S 185 (547)
T PRK08132 120 INLQQYYVEGYLVERAQALPNIDLRWKNKVTGLEQH-DDGVT-LTVET----PDG--------PYTLEADWVIACDGARS 185 (547)
T ss_pred EecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEEc-CCEEE-EEEEC----CCC--------cEEEEeCEEEECCCCCc
Confidence 4478889999999999886 7999999999999875 33332 33322 111 14799999999999999
Q ss_pred hhhHHHh
Q psy9487 92 HLTKSLS 98 (101)
Q Consensus 92 ~l~~~l~ 98 (101)
.+.+.|-
T Consensus 186 ~vR~~lg 192 (547)
T PRK08132 186 PLREMLG 192 (547)
T ss_pred HHHHHcC
Confidence 9987653
No 91
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=98.06 E-value=2.4e-05 Score=63.82 Aligned_cols=77 Identities=21% Similarity=0.190 Sum_probs=49.5
Q ss_pred HHHHHHHHHHH----HCCCEEecCCceeEEEEecCCcEEEEEecc--ccccCCCCCC-cCCCCCeEEEccEEEEeecCCc
Q psy9487 19 HVVKWLGEQAE----AMGVEIYPGIPASEVLYHGDGSVKGIATGD--VGIAKDGSPK-DTFARGMELHAKVTIFAEGCHG 91 (101)
Q Consensus 19 ~~d~~l~~~A~----~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~--~g~~~~g~~~-~~~~~g~~i~A~~VI~A~G~~s 91 (101)
.+.+.|.++++ ..|++|++++++++++.+ +++|+||.+.+ .+...+|+.. ..-..-..|+|+.||+|+|..+
T Consensus 149 ~~~~~l~~~~~~~~~~~gv~i~~~t~~~~Li~~-~g~V~Gv~~~~~~~~~~~~~~~~~~~~~~~~~i~AkaVILATGGf~ 227 (549)
T PRK12834 149 GVVEPFERRVREAAARGLVRFRFRHRVDELVVT-DGAVTGVRGTVLEPSDAERGEASSREVVGEFELRAQAVIVTSGGIG 227 (549)
T ss_pred HHHHHHHHHHHHHHHhCCceEEecCEeeEEEEe-CCEEEEEEEEecccccccccccccccccceEEEecCEEEEeCCCcc
Confidence 35566666654 236999999999999986 79999998632 1100000000 0000015799999999999999
Q ss_pred hhhHH
Q psy9487 92 HLTKS 96 (101)
Q Consensus 92 ~l~~~ 96 (101)
.+.+.
T Consensus 228 ~n~em 232 (549)
T PRK12834 228 GNHEL 232 (549)
T ss_pred cCHHH
Confidence 88443
No 92
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.05 E-value=2.3e-05 Score=65.39 Aligned_cols=61 Identities=23% Similarity=0.357 Sum_probs=49.7
Q ss_pred HHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487 22 KWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL 93 (101)
Q Consensus 22 ~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l 93 (101)
+.|.+++++.||+|++++.|++++.+ +++|+||.+.+. .+|+. ..|.|+.||+|+|..+.+
T Consensus 174 ~~L~~~~~~~gV~i~~~t~v~~Li~d-~g~V~GV~~~~~---~~g~~-------~~i~AkaVVLATGG~g~~ 234 (640)
T PRK07573 174 QALSRQIAAGTVKMYTRTEMLDLVVV-DGRARGIVARNL---VTGEI-------ERHTADAVVLATGGYGNV 234 (640)
T ss_pred HHHHHHHHhcCCEEEeceEEEEEEEe-CCEEEEEEEEEC---CCCcE-------EEEECCEEEECCCCcccC
Confidence 56677888999999999999999986 789999998641 12322 479999999999998864
No 93
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=98.02 E-value=3.3e-05 Score=62.64 Aligned_cols=67 Identities=16% Similarity=0.273 Sum_probs=49.4
Q ss_pred HHHHHHHHHH-CCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEcc-EEEEeecCCchhhHHHh
Q psy9487 21 VKWLGEQAEA-MGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAK-VTIFAEGCHGHLTKSLS 98 (101)
Q Consensus 21 d~~l~~~A~~-~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~-~VI~A~G~~s~l~~~l~ 98 (101)
...|.+++++ .|++|+++++|++++.+ +++|+||.... +++. ..|+|+ .||+|+|..+.+. .|.
T Consensus 176 ~~~l~~~~~~~~gv~i~~~t~~~~Li~~-~g~v~Gv~~~~-----~g~~-------~~i~A~k~VIlAtGG~~~n~-~m~ 241 (513)
T PRK12837 176 IGRFLAALARFPNARLRLNTPLVELVVE-DGRVVGAVVER-----GGER-------RRVRARRGVLLAAGGFEQND-DMR 241 (513)
T ss_pred HHHHHHHHHhCCCCEEEeCCEEEEEEec-CCEEEEEEEEE-----CCcE-------EEEEeCceEEEeCCCccCCH-HHH
Confidence 3334555555 59999999999999986 78999998743 2221 579996 7999999998873 444
Q ss_pred hhC
Q psy9487 99 SRF 101 (101)
Q Consensus 99 ~~~ 101 (101)
++|
T Consensus 242 ~~~ 244 (513)
T PRK12837 242 ARY 244 (513)
T ss_pred HHh
Confidence 443
No 94
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.02 E-value=4.5e-05 Score=58.24 Aligned_cols=63 Identities=21% Similarity=0.180 Sum_probs=51.2
Q ss_pred cEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCc
Q psy9487 12 NYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG 91 (101)
Q Consensus 12 ~~~v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s 91 (101)
+..++-..+.+.|.+.+++.|++++.+++|+++..+ ++.+ .|.+.+ .++.|+.||+|+|.|+
T Consensus 139 ~g~i~p~~~~~~l~~~~~~~g~~~~~~~~V~~i~~~-~~~~-~v~~~~----------------~~i~a~~vV~aaG~~~ 200 (380)
T TIGR01377 139 GGVLYAEKALRALQELAEAHGATVRDGTKVVEIEPT-ELLV-TVKTTK----------------GSYQANKLVVTAGAWT 200 (380)
T ss_pred CcEEcHHHHHHHHHHHHHHcCCEEECCCeEEEEEec-CCeE-EEEeCC----------------CEEEeCEEEEecCcch
Confidence 445577789999999999999999999999999874 4444 476643 4699999999999985
Q ss_pred h
Q psy9487 92 H 92 (101)
Q Consensus 92 ~ 92 (101)
.
T Consensus 201 ~ 201 (380)
T TIGR01377 201 S 201 (380)
T ss_pred H
Confidence 4
No 95
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.01 E-value=3.2e-05 Score=63.56 Aligned_cols=65 Identities=25% Similarity=0.372 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487 18 GHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL 93 (101)
Q Consensus 18 ~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l 93 (101)
..+-+.|.+++++.|++|++++.|++++.+ +++|.||...+. .+++. ..++|+.||+|+|.++.+
T Consensus 135 ~~i~~~L~~~~~~~gi~i~~~t~v~~L~~~-~g~v~Gv~~~~~---~~g~~-------~~i~AkaVVlATGG~~~~ 199 (575)
T PRK05945 135 HAILHELVNNLRRYGVTIYDEWYVMRLILE-DNQAKGVVMYHI---ADGRL-------EVVRAKAVMFATGGYGRV 199 (575)
T ss_pred HHHHHHHHHHHhhCCCEEEeCcEEEEEEEE-CCEEEEEEEEEc---CCCeE-------EEEECCEEEECCCCCcCC
Confidence 456778899999999999999999999985 789999986431 12221 469999999999998865
No 96
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=98.00 E-value=3.5e-05 Score=62.87 Aligned_cols=68 Identities=13% Similarity=0.112 Sum_probs=56.2
Q ss_pred cEEEEhHHHHHHHHHHHHH----CC--CEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEE
Q psy9487 12 NYVVRLGHVVKWLGEQAEA----MG--VEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIF 85 (101)
Q Consensus 12 ~~~v~r~~~d~~l~~~A~~----~G--v~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~ 85 (101)
+..++-..+.+.|++.|++ .| ++|+++++|++|..+ ++.++.|.+.+ .+++|+.||+
T Consensus 205 g~~Vd~~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~-~~~~~~V~T~~----------------G~i~A~~VVv 267 (497)
T PTZ00383 205 LTTVDYQKLSESFVKHARRDALVPGKKISINLNTEVLNIERS-NDSLYKIHTNR----------------GEIRARFVVV 267 (497)
T ss_pred CEEECHHHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEec-CCCeEEEEECC----------------CEEEeCEEEE
Confidence 3567888999999999999 88 889999999999874 56677788764 4699999999
Q ss_pred eecCCch-hhHH
Q psy9487 86 AEGCHGH-LTKS 96 (101)
Q Consensus 86 A~G~~s~-l~~~ 96 (101)
|+|+|+. |+++
T Consensus 268 aAG~~S~~La~~ 279 (497)
T PTZ00383 268 SACGYSLLFAQK 279 (497)
T ss_pred CcChhHHHHHHH
Confidence 9999985 3444
No 97
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=97.99 E-value=2.6e-05 Score=65.36 Aligned_cols=64 Identities=19% Similarity=0.205 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487 19 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL 93 (101)
Q Consensus 19 ~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l 93 (101)
.+...|.+++++.|++|++++.|++++.+ +++|.||.+.+. .+|+. ..+.|+.||+|+|.++.+
T Consensus 159 ~l~~~L~~~~~~~gv~i~~~~~~~~Li~~-~g~v~Gv~~~~~---~~G~~-------~~i~AkaVVLATGG~g~~ 222 (657)
T PRK08626 159 TMLYAVDNEAIKLGVPVHDRKEAIALIHD-GKRCYGAVVRCL---ITGEL-------RAYVAKATLIATGGYGRI 222 (657)
T ss_pred HHHHHHHHHHHhCCCEEEeeEEEEEEEEE-CCEEEEEEEEEc---CCCcE-------EEEEcCeEEECCCcccCC
Confidence 34567888999999999999999999985 789999988641 23332 568999999999998876
No 98
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=97.99 E-value=1.8e-05 Score=61.07 Aligned_cols=63 Identities=11% Similarity=0.079 Sum_probs=51.2
Q ss_pred EEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCch
Q psy9487 13 YVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH 92 (101)
Q Consensus 13 ~~v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~ 92 (101)
..++-..+.+.|++.+++ |++|+++++|+++..+ +++ +.|++.+ |..++|+.||+|+|+|+.
T Consensus 130 g~idp~~~~~~l~~~~~~-G~~i~~~~~V~~i~~~-~~~-~~v~t~~---------------g~~~~a~~vV~a~G~~~~ 191 (381)
T TIGR03197 130 GWLSPPQLCRALLAHAGI-RLTLHFNTEITSLERD-GEG-WQLLDAN---------------GEVIAASVVVLANGAQAG 191 (381)
T ss_pred cccChHHHHHHHHhccCC-CcEEEeCCEEEEEEEc-CCe-EEEEeCC---------------CCEEEcCEEEEcCCcccc
Confidence 345667888899999999 9999999999999875 454 5577754 356899999999999985
Q ss_pred h
Q psy9487 93 L 93 (101)
Q Consensus 93 l 93 (101)
.
T Consensus 192 ~ 192 (381)
T TIGR03197 192 Q 192 (381)
T ss_pred c
Confidence 4
No 99
>PRK07804 L-aspartate oxidase; Provisional
Probab=97.99 E-value=3.7e-05 Score=62.84 Aligned_cols=69 Identities=25% Similarity=0.320 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487 18 GHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL 93 (101)
Q Consensus 18 ~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l 93 (101)
..+-+.|.+++++.|+++++++.|++++.+++++|.||.+.+.....++. -..++|+.||+|+|.++.+
T Consensus 144 ~~i~~~L~~~~~~~gV~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~~~~~g-------~~~i~Ak~VIlATGG~~~~ 212 (541)
T PRK07804 144 AEVQRALDAAVRADPLDIREHALALDLLTDGTGAVAGVTLHVLGEGSPDG-------VGAVHAPAVVLATGGLGQL 212 (541)
T ss_pred HHHHHHHHHHHHhCCCEEEECeEeeeeEEcCCCeEEEEEEEeccCCCCCc-------EEEEEcCeEEECCCCCCCC
Confidence 35677889999999999999999999998645799999875311000110 1479999999999998865
No 100
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=97.98 E-value=6.9e-05 Score=62.51 Aligned_cols=80 Identities=13% Similarity=0.144 Sum_probs=58.5
Q ss_pred CcEEEEhHHHHHHHHHHHHHCCC--EEecCCceeEEEEecCC-cEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEee
Q psy9487 11 GNYVVRLGHVVKWLGEQAEAMGV--EIYPGIPASEVLYHGDG-SVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAE 87 (101)
Q Consensus 11 ~~~~v~r~~~d~~l~~~A~~~Gv--~i~~gt~v~~i~~~~~g-~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~ 87 (101)
+..++++..+.++|.+.+++.|. ++..+++++++..++++ .-+.|.+.+.....+|+. .+++|++||.||
T Consensus 134 ~~~~l~Q~~le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~~~~~V~v~l~~~~~~~~g~~-------~tv~A~~lVGaD 206 (634)
T PRK08294 134 PHVIVNQARVHDYFLDVMRNSPTRLEPDYGREFVDLEVDEEGEYPVTVTLRRTDGEHEGEE-------ETVRAKYVVGCD 206 (634)
T ss_pred ccEeeCHHHHHHHHHHHHHhcCCceEEEeCcEEEEEEECCCCCCCEEEEEEECCCCCCCce-------EEEEeCEEEECC
Confidence 34688999999999999999875 77889999999875322 223355543110112321 589999999999
Q ss_pred cCCchhhHHH
Q psy9487 88 GCHGHLTKSL 97 (101)
Q Consensus 88 G~~s~l~~~l 97 (101)
|++|.+.++|
T Consensus 207 Ga~S~VR~~l 216 (634)
T PRK08294 207 GARSRVRKAI 216 (634)
T ss_pred CCchHHHHhc
Confidence 9999998877
No 101
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=97.98 E-value=3.6e-05 Score=63.87 Aligned_cols=65 Identities=20% Similarity=0.265 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHH----CCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487 19 HVVKWLGEQAEA----MGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL 93 (101)
Q Consensus 19 ~~d~~l~~~A~~----~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l 93 (101)
.+...|.+.+++ .||+|++++.+++++.+++++|+||.+.+. .+++. ..|.|+.||+|+|..+.+
T Consensus 130 ~i~~~L~~~~~~~~~~~gV~i~~~t~v~~Li~dd~grV~GV~~~~~---~~g~~-------~~i~AkaVVLATGG~g~~ 198 (603)
T TIGR01811 130 QLLLALDSALRRQIAAGLVEKYEGWEMLDIIVVDGNRARGIIARNL---VTGEI-------ETHSADAVILATGGYGNV 198 (603)
T ss_pred HHHHHHHHHHHhhhccCCcEEEeCcEEEEEEEcCCCEEEEEEEEEC---CCCcE-------EEEEcCEEEECCCCCcCc
Confidence 344455555544 389999999999999864579999998641 13332 579999999999998755
No 102
>PLN02463 lycopene beta cyclase
Probab=97.98 E-value=4.6e-05 Score=61.29 Aligned_cols=65 Identities=18% Similarity=0.194 Sum_probs=53.1
Q ss_pred cEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCc
Q psy9487 12 NYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG 91 (101)
Q Consensus 12 ~~~v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s 91 (101)
...++|..|+++|.+++.+.|++++. +.|+++..+ ++. ..|.+.+ |.+++|++||+|+|..|
T Consensus 108 y~~V~R~~L~~~Ll~~~~~~GV~~~~-~~V~~I~~~-~~~-~~V~~~d---------------G~~i~A~lVI~AdG~~s 169 (447)
T PLN02463 108 YGRVNRKKLKSKMLERCIANGVQFHQ-AKVKKVVHE-ESK-SLVVCDD---------------GVKIQASLVLDATGFSR 169 (447)
T ss_pred ceeEEHHHHHHHHHHHHhhcCCEEEe-eEEEEEEEc-CCe-EEEEECC---------------CCEEEcCEEEECcCCCc
Confidence 34589999999999999999999974 689998874 333 4577655 46899999999999999
Q ss_pred hhh
Q psy9487 92 HLT 94 (101)
Q Consensus 92 ~l~ 94 (101)
.+.
T Consensus 170 ~l~ 172 (447)
T PLN02463 170 CLV 172 (447)
T ss_pred Ccc
Confidence 864
No 103
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.97 E-value=3.6e-05 Score=62.77 Aligned_cols=65 Identities=25% Similarity=0.291 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487 19 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL 93 (101)
Q Consensus 19 ~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l 93 (101)
.+-..|.+++++.||+|++++.+++++.+++++|+||...+. ++++. ..|+|+.||+|+|..+.+
T Consensus 135 ~i~~~L~~~~~~~gv~i~~~t~v~~Li~~~~~~v~Gv~~~~~---~~g~~-------~~i~AkaVIlATGG~~~~ 199 (543)
T PRK06263 135 EMMMGLMEYLIKERIKILEEVMAIKLIVDENREVIGAIFLDL---RNGEI-------FPIYAKATILATGGAGQL 199 (543)
T ss_pred HHHHHHHHHHhcCCCEEEeCeEeeeeEEeCCcEEEEEEEEEC---CCCcE-------EEEEcCcEEECCCCCCCC
Confidence 466678888999999999999999999864445999886531 22322 579999999999998754
No 104
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=97.96 E-value=6.7e-05 Score=58.24 Aligned_cols=63 Identities=24% Similarity=0.210 Sum_probs=52.2
Q ss_pred cEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCc
Q psy9487 12 NYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG 91 (101)
Q Consensus 12 ~~~v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s 91 (101)
...++-..+.+.|.+.+++.|++++++++|.++..+ ++.+ .|.+.+ .++.|+.||+|+|+|+
T Consensus 143 ~g~vd~~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~~-~~~~-~V~~~~----------------g~i~ad~vV~A~G~~s 204 (393)
T PRK11728 143 TGIVDYRAVAEAMAELIQARGGEIRLGAEVTALDEH-ANGV-VVRTTQ----------------GEYEARTLINCAGLMS 204 (393)
T ss_pred ceEECHHHHHHHHHHHHHhCCCEEEcCCEEEEEEec-CCeE-EEEECC----------------CEEEeCEEEECCCcch
Confidence 345678899999999999999999999999999874 4444 566643 3799999999999998
Q ss_pred h
Q psy9487 92 H 92 (101)
Q Consensus 92 ~ 92 (101)
.
T Consensus 205 ~ 205 (393)
T PRK11728 205 D 205 (393)
T ss_pred H
Confidence 4
No 105
>PTZ00367 squalene epoxidase; Provisional
Probab=97.95 E-value=6e-05 Score=62.37 Aligned_cols=87 Identities=11% Similarity=0.159 Sum_probs=60.1
Q ss_pred CcEEEEhHHHHHHHHHHH---HHCCCEEecCCceeEEEEecC---CcEEEEEecccccc----------CCCCCCcCCCC
Q psy9487 11 GNYVVRLGHVVKWLGEQA---EAMGVEIYPGIPASEVLYHGD---GSVKGIATGDVGIA----------KDGSPKDTFAR 74 (101)
Q Consensus 11 ~~~~v~r~~~d~~l~~~A---~~~Gv~i~~gt~v~~i~~~~~---g~v~GV~~~~~g~~----------~~g~~~~~~~~ 74 (101)
.++.++|..|.+.|.+.+ ...+|+++++ +|++++.++. +++.||+....+.. -+.+.......
T Consensus 124 ~g~~~~rg~~~~~Lr~~a~~~~~~~V~v~~~-~v~~l~~~~~~~~~~v~gV~~~~~~~~~~~~~~f~~~~~~~~~~~~~~ 202 (567)
T PTZ00367 124 SGVSFHFGDFVQNLRSHVFHNCQDNVTMLEG-TVNSLLEEGPGFSERAYGVEYTEAEKYDVPENPFREDPPSANPSATTV 202 (567)
T ss_pred ceeEeEHHHHHHHHHHHHHhhcCCCcEEEEe-EEEEeccccCccCCeeEEEEEecCCccccccccccccccccccccccc
Confidence 367889999999999887 4578999865 7888876422 25888887542100 00000111123
Q ss_pred CeEEEccEEEEeecCCchhhHHHh
Q psy9487 75 GMELHAKVTIFAEGCHGHLTKSLS 98 (101)
Q Consensus 75 g~~i~A~~VI~A~G~~s~l~~~l~ 98 (101)
+.+++|++||.|||.+|.+++++.
T Consensus 203 g~~~~AdLvVgADG~~S~vR~~l~ 226 (567)
T PTZ00367 203 RKVATAPLVVMCDGGMSKFKSRYQ 226 (567)
T ss_pred ceEEEeCEEEECCCcchHHHHHcc
Confidence 578999999999999999988873
No 106
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.93 E-value=6.3e-05 Score=60.72 Aligned_cols=66 Identities=20% Similarity=0.150 Sum_probs=52.9
Q ss_pred EEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487 15 VRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL 93 (101)
Q Consensus 15 v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l 93 (101)
++-..+..+|+..|++.|++++.+++|+++..+ +..++|.+.+ ..|+ ..+|+|+.||+|+|+|+.-
T Consensus 152 vd~~rl~~~l~~~a~~~Ga~i~~~~~V~~i~~~--~~~~~v~~~~----~~g~-------~~~i~a~~VVnAaG~wa~~ 217 (502)
T PRK13369 152 VDDARLVVLNALDAAERGATILTRTRCVSARRE--GGLWRVETRD----ADGE-------TRTVRARALVNAAGPWVTD 217 (502)
T ss_pred ecHHHHHHHHHHHHHHCCCEEecCcEEEEEEEc--CCEEEEEEEe----CCCC-------EEEEEecEEEECCCccHHH
Confidence 567888899999999999999999999999874 3446677755 1122 1579999999999999853
No 107
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=97.92 E-value=6.4e-05 Score=61.65 Aligned_cols=63 Identities=22% Similarity=0.354 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEcc-EEEEeecCCchhh
Q psy9487 19 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAK-VTIFAEGCHGHLT 94 (101)
Q Consensus 19 ~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~-~VI~A~G~~s~l~ 94 (101)
.+...|.+.+++.|++|+++++|++|+.+ +++|+||.... +++ ...|+|+ .||+|+|......
T Consensus 209 ~~~~~L~~~~~~~gv~v~~~t~v~~l~~~-~g~v~Gv~~~~-----~g~-------~~~i~A~~~VIlAtGG~~~n~ 272 (557)
T PRK07843 209 ALAAGLRIGLQRAGVPVLLNTPLTDLYVE-DGRVTGVHAAE-----SGE-------PQLIRARRGVILASGGFEHNE 272 (557)
T ss_pred HHHHHHHHHHHcCCCEEEeCCEEEEEEEe-CCEEEEEEEEe-----CCc-------EEEEEeceeEEEccCCcCcCH
Confidence 45667778889999999999999999986 78999998753 222 1579996 6999999988863
No 108
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=97.92 E-value=6.1e-05 Score=58.76 Aligned_cols=71 Identities=21% Similarity=0.171 Sum_probs=53.0
Q ss_pred EEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487 14 VVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL 93 (101)
Q Consensus 14 ~v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l 93 (101)
...+..+.+.|.+++.+.|++++.++++..+.-. ++....|...+ +|+ ...++|++||.|||.+|.+
T Consensus 99 ~~~~~~l~~~L~~~~~~~g~~~~~~~~~v~~~~~-~~~~~~V~~~~-----~g~-------~~~i~adlvIGADG~~S~V 165 (390)
T TIGR02360 99 VYGQTEVTRDLMEAREAAGLTTVYDADDVRLHDL-AGDRPYVTFER-----DGE-------RHRLDCDFIAGCDGFHGVS 165 (390)
T ss_pred EeCHHHHHHHHHHHHHhcCCeEEEeeeeEEEEec-CCCccEEEEEE-----CCe-------EEEEEeCEEEECCCCchhh
Confidence 3457888999999999999999999888777542 23334565531 121 1479999999999999999
Q ss_pred hHHH
Q psy9487 94 TKSL 97 (101)
Q Consensus 94 ~~~l 97 (101)
++++
T Consensus 166 R~~l 169 (390)
T TIGR02360 166 RASI 169 (390)
T ss_pred HHhc
Confidence 8875
No 109
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=97.90 E-value=6.4e-05 Score=59.87 Aligned_cols=61 Identities=25% Similarity=0.230 Sum_probs=49.5
Q ss_pred EEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCch
Q psy9487 13 YVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH 92 (101)
Q Consensus 13 ~~v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~ 92 (101)
..++=.++.+.|++.|++.||+|+++++|+++.. +..+.|++.+ .+++|+.||+|+|+|+.
T Consensus 178 g~i~P~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~---~~~~~v~t~~----------------g~v~A~~VV~Atga~s~ 238 (460)
T TIGR03329 178 ASVQPGLLVRGLRRVALELGVEIHENTPMTGLEE---GQPAVVRTPD----------------GQVTADKVVLALNAWMA 238 (460)
T ss_pred eEECHHHHHHHHHHHHHHcCCEEECCCeEEEEee---CCceEEEeCC----------------cEEECCEEEEccccccc
Confidence 4456778889999999999999999999999864 2334577653 46999999999999964
No 110
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=97.89 E-value=6.6e-05 Score=62.30 Aligned_cols=66 Identities=17% Similarity=0.162 Sum_probs=51.8
Q ss_pred hHHHHHHHHHHHHHCC-CEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487 17 LGHVVKWLGEQAEAMG-VEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL 93 (101)
Q Consensus 17 r~~~d~~l~~~A~~~G-v~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l 93 (101)
-..+.+.|.+.+++.| |++++++.|.+++.+ +++|+||...+. .+++. ..++|+.||+|+|.++.+
T Consensus 131 G~~~~~~L~~~a~~~ggV~i~~~~~v~~Li~~-~g~v~Gv~~~~~---~~g~~-------~~i~AkaVILATGG~~~~ 197 (608)
T PRK06854 131 GESYKPIVAEAAKKALGDNVLNRVFITDLLVD-DNRIAGAVGFSV---RENKF-------YVFKAKAVIVATGGAAGI 197 (608)
T ss_pred hHHHHHHHHHHHHhcCCCEEEeCCEEEEEEEe-CCEEEEEEEEEc---cCCcE-------EEEECCEEEECCCchhhc
Confidence 3467888889998886 999999999999985 689999975431 12221 479999999999988753
No 111
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=97.88 E-value=8.6e-05 Score=62.72 Aligned_cols=66 Identities=14% Similarity=0.192 Sum_probs=52.0
Q ss_pred cEEEEhHHHHHHHHHHHHHCCCE-EecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCC
Q psy9487 12 NYVVRLGHVVKWLGEQAEAMGVE-IYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH 90 (101)
Q Consensus 12 ~~~v~r~~~d~~l~~~A~~~Gv~-i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~ 90 (101)
++.++|..|++.|++. .+.+ ++.+++|+++..+ ++.|. |.+.+ |.++.+++||.|||++
T Consensus 188 ~~~I~R~~L~~~L~~a---lg~~~i~~g~~V~~I~~~-~d~Vt-V~~~d---------------G~ti~aDlVVGADG~~ 247 (668)
T PLN02927 188 TRVISRMTLQQILARA---VGEDVIRNESNVVDFEDS-GDKVT-VVLEN---------------GQRYEGDLLVGADGIW 247 (668)
T ss_pred EEEEeHHHHHHHHHhh---CCCCEEEcCCEEEEEEEe-CCEEE-EEECC---------------CCEEEcCEEEECCCCC
Confidence 5789999999998654 4544 5678899999875 45554 66654 4579999999999999
Q ss_pred chhhHHH
Q psy9487 91 GHLTKSL 97 (101)
Q Consensus 91 s~l~~~l 97 (101)
|.+.+++
T Consensus 248 S~vR~~l 254 (668)
T PLN02927 248 SKVRNNL 254 (668)
T ss_pred cHHHHHh
Confidence 9998776
No 112
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=97.87 E-value=4.9e-05 Score=59.29 Aligned_cols=68 Identities=16% Similarity=0.091 Sum_probs=52.8
Q ss_pred cEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCc
Q psy9487 12 NYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG 91 (101)
Q Consensus 12 ~~~v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s 91 (101)
...++|..|.+.|.+.+.. ..+..+++|+++..+ ++. +.|...+ |.++.+++||+|||.+|
T Consensus 99 ~~~i~R~~l~~~L~~~~~~--~~v~~~~~v~~i~~~-~~~-~~v~~~~---------------g~~~~ad~vVgADG~~S 159 (414)
T TIGR03219 99 QSSVHRADFLDALLKHLPE--GIASFGKRATQIEEQ-AEE-VQVLFTD---------------GTEYRCDLLIGADGIKS 159 (414)
T ss_pred cccCCHHHHHHHHHHhCCC--ceEEcCCEEEEEEec-CCc-EEEEEcC---------------CCEEEeeEEEECCCccH
Confidence 3468899999999887744 567889999999875 333 3455544 46799999999999999
Q ss_pred hhhHHHh
Q psy9487 92 HLTKSLS 98 (101)
Q Consensus 92 ~l~~~l~ 98 (101)
.+.+.+.
T Consensus 160 ~vR~~l~ 166 (414)
T TIGR03219 160 ALRDYVL 166 (414)
T ss_pred HHHHHhc
Confidence 9988763
No 113
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=97.87 E-value=7.3e-05 Score=66.19 Aligned_cols=75 Identities=20% Similarity=0.278 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHH---CCCEEecCCceeEEEEecC--------CcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEee
Q psy9487 19 HVVKWLGEQAEA---MGVEIYPGIPASEVLYHGD--------GSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAE 87 (101)
Q Consensus 19 ~~d~~l~~~A~~---~Gv~i~~gt~v~~i~~~~~--------g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~ 87 (101)
.+.+.|.+.+++ .||+|++++++++++.+++ ++|+||.+.+.+ +.+|+. ..|+|+.||+|+
T Consensus 545 ~i~~~l~~~~~~~~~~gv~i~~~t~~~~LI~d~~~~~~G~~~~~V~Gv~~~~~~-~~~g~~-------~~i~AkaVILAT 616 (1167)
T PTZ00306 545 TIMRTLEDHIRTKLSGRVTIMTETTVTSLLSESSARPDGVREIRVTGVRYKQAS-DASGQV-------MDLLADAVILAT 616 (1167)
T ss_pred HHHHHHHHHHHhhccCCcEEEECCEEEEEEecCCcccCCCccceEEEEEEEecc-cCCCcE-------EEEEeceEEEec
Confidence 355666777665 4999999999999998631 289999987520 113432 579999999999
Q ss_pred cCCchhhH--HHhhhC
Q psy9487 88 GCHGHLTK--SLSSRF 101 (101)
Q Consensus 88 G~~s~l~~--~l~~~~ 101 (101)
|..+.+.. .|.++|
T Consensus 617 GGf~~N~e~~~m~~~y 632 (1167)
T PTZ00306 617 GGFSNDHTPNSLLREY 632 (1167)
T ss_pred CCcccCccHHHHHHHh
Confidence 99988742 455444
No 114
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=97.87 E-value=7.4e-05 Score=59.63 Aligned_cols=59 Identities=29% Similarity=0.339 Sum_probs=42.7
Q ss_pred hHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCc
Q psy9487 17 LGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG 91 (101)
Q Consensus 17 r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s 91 (101)
...+..+|.++++++||+|+++++|.+|..+ ++.+..|++.+ +.++.|+.||+|+|..|
T Consensus 108 a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~-~~~~f~v~~~~---------------~~~~~a~~vILAtGG~S 166 (409)
T PF03486_consen 108 ASSVVDALLEELKRLGVEIHFNTRVKSIEKK-EDGVFGVKTKN---------------GGEYEADAVILATGGKS 166 (409)
T ss_dssp HHHHHHHHHHHHHHHT-EEE-S--EEEEEEE-TTEEEEEEETT---------------TEEEEESEEEE----SS
T ss_pred HHHHHHHHHHHHHHcCCEEEeCCEeeeeeec-CCceeEeeccC---------------cccccCCEEEEecCCCC
Confidence 3456678899999999999999999999986 67788899843 37899999999999765
No 115
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=97.84 E-value=7e-05 Score=60.27 Aligned_cols=63 Identities=25% Similarity=0.301 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHH-CCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487 18 GHVVKWLGEQAEA-MGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL 93 (101)
Q Consensus 18 ~~~d~~l~~~A~~-~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l 93 (101)
..+.+.|.+++++ .|++|++++.|++++.+ +++|.||.+.+. +. ...++|+.||+|+|.++.+
T Consensus 128 ~~l~~~L~~~~~~~~gi~i~~~~~v~~l~~~-~g~v~Gv~~~~~-----~~-------~~~i~A~~VVlAtGG~~~~ 191 (488)
T TIGR00551 128 REVITTLVKKALNHPNIRIIEGENALDLLIE-TGRVVGVWVWNR-----ET-------VETCHADAVVLATGGAGKL 191 (488)
T ss_pred HHHHHHHHHHHHhcCCcEEEECeEeeeeecc-CCEEEEEEEEEC-----Cc-------EEEEEcCEEEECCCcccCC
Confidence 4677888999988 69999999999999985 789999988641 11 1479999999999999875
No 116
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=97.84 E-value=7.9e-05 Score=59.58 Aligned_cols=60 Identities=20% Similarity=0.276 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487 18 GHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL 93 (101)
Q Consensus 18 ~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l 93 (101)
..+.+.|.+.+++.|++|+++++|++|..+ ++++++|++.+ |.++.|+.||.|.+....+
T Consensus 219 ~~l~~al~~~~~~~G~~i~~~~~V~~i~~~-~~~~~~V~~~~---------------g~~~~ad~VI~a~~~~~~~ 278 (502)
T TIGR02734 219 GALVAAMAKLAEDLGGELRLNAEVIRIETE-GGRATAVHLAD---------------GERLDADAVVSNADLHHTY 278 (502)
T ss_pred HHHHHHHHHHHHHCCCEEEECCeEEEEEee-CCEEEEEEECC---------------CCEEECCEEEECCcHHHHH
Confidence 678889999999999999999999999986 68889998865 4679999999998865544
No 117
>PRK06175 L-aspartate oxidase; Provisional
Probab=97.83 E-value=8.6e-05 Score=59.13 Aligned_cols=62 Identities=24% Similarity=0.303 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHH-CCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487 19 HVVKWLGEQAEA-MGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL 93 (101)
Q Consensus 19 ~~d~~l~~~A~~-~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l 93 (101)
.+.+.|.+++++ .||+|++++++++|+.+ +++|.||.... +++ ...++|+.||+|+|..+.+
T Consensus 129 ~l~~~L~~~~~~~~gV~i~~~t~v~~Li~~-~~~v~Gv~~~~-----~g~-------~~~i~Ak~VILAtGG~~~l 191 (433)
T PRK06175 129 KVEKILLKKVKKRKNITIIENCYLVDIIEN-DNTCIGAICLK-----DNK-------QINIYSKVTILATGGIGGL 191 (433)
T ss_pred HHHHHHHHHHHhcCCCEEEECcEeeeeEec-CCEEEEEEEEE-----CCc-------EEEEEcCeEEEccCccccc
Confidence 466677888875 59999999999999885 78999987543 111 1479999999999987654
No 118
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=97.83 E-value=0.00011 Score=59.61 Aligned_cols=67 Identities=18% Similarity=0.173 Sum_probs=51.3
Q ss_pred EEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487 15 VRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL 93 (101)
Q Consensus 15 v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l 93 (101)
++-..+...++..|++.|++++.+++|+++..+ ++ .++|.+.+. .+|+ ..+|+|+.||+|+|+|+.-
T Consensus 152 vd~~rl~~~l~~~A~~~Ga~i~~~~~V~~i~~~-~~-~~~v~~~~~---~~g~-------~~~i~a~~VVnAaG~wa~~ 218 (508)
T PRK12266 152 VDDARLVVLNARDAAERGAEILTRTRVVSARRE-NG-LWHVTLEDT---ATGK-------RYTVRARALVNAAGPWVKQ 218 (508)
T ss_pred cCHHHHHHHHHHHHHHcCCEEEcCcEEEEEEEe-CC-EEEEEEEEc---CCCC-------EEEEEcCEEEECCCccHHH
Confidence 456677788899999999999999999999874 44 456776541 1222 2579999999999999853
No 119
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=97.82 E-value=0.00014 Score=50.84 Aligned_cols=61 Identities=25% Similarity=0.278 Sum_probs=46.5
Q ss_pred EEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCc
Q psy9487 14 VVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG 91 (101)
Q Consensus 14 ~v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s 91 (101)
...+..+.++|.+.+++.++++++++.|+++.++ ++. .-|.+.+ +.+++|+.||+|+|..+
T Consensus 78 ~~~~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~-~~~-w~v~~~~---------------~~~~~a~~VVlAtG~~~ 138 (203)
T PF13738_consen 78 FPSGEEVLDYLQEYAERFGLEIRFNTRVESVRRD-GDG-WTVTTRD---------------GRTIRADRVVLATGHYS 138 (203)
T ss_dssp SEBHHHHHHHHHHHHHHTTGGEETS--EEEEEEE-TTT-EEEEETT---------------S-EEEEEEEEE---SSC
T ss_pred cCCHHHHHHHHHHHHhhcCcccccCCEEEEEEEe-ccE-EEEEEEe---------------cceeeeeeEEEeeeccC
Confidence 3788889999999999999999999999999997 445 5588865 35899999999999753
No 120
>PRK07236 hypothetical protein; Provisional
Probab=97.80 E-value=0.0001 Score=57.02 Aligned_cols=65 Identities=14% Similarity=0.049 Sum_probs=50.1
Q ss_pred EEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487 14 VVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL 93 (101)
Q Consensus 14 ~v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l 93 (101)
.+.+..+.+.|.+.. .+++++.++.|+++..+ ++.+. |...+ |.+++|++||.|||++|.+
T Consensus 96 ~~~~~~l~~~L~~~~--~~~~i~~~~~v~~i~~~-~~~v~-v~~~~---------------g~~~~ad~vIgADG~~S~v 156 (386)
T PRK07236 96 QTSWNVLYRALRAAF--PAERYHLGETLVGFEQD-GDRVT-ARFAD---------------GRRETADLLVGADGGRSTV 156 (386)
T ss_pred ccCHHHHHHHHHHhC--CCcEEEcCCEEEEEEec-CCeEE-EEECC---------------CCEEEeCEEEECCCCCchH
Confidence 346778888877544 35789999999999875 44433 55544 4689999999999999999
Q ss_pred hHHH
Q psy9487 94 TKSL 97 (101)
Q Consensus 94 ~~~l 97 (101)
++++
T Consensus 157 R~~l 160 (386)
T PRK07236 157 RAQL 160 (386)
T ss_pred HHHh
Confidence 8876
No 121
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=97.79 E-value=0.00011 Score=60.66 Aligned_cols=64 Identities=19% Similarity=0.393 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHC-CCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487 19 HVVKWLGEQAEAM-GVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL 93 (101)
Q Consensus 19 ~~d~~l~~~A~~~-Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l 93 (101)
.+.+.|.+++.+. |+++++++.+++++.+ +++|.||...+. .+|+. ..++|+.||+|+|..+.+
T Consensus 134 ~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~-~g~v~Gv~~~~~---~~g~~-------~~i~AkaVIlATGG~~~l 198 (582)
T PRK09231 134 HMLHTLFQTSLKYPQIQRFDEHFVLDILVD-DGHVRGLVAMNM---MEGTL-------VQIRANAVVMATGGAGRV 198 (582)
T ss_pred HHHHHHHHHhhcCCCcEEEeCeEEEEEEEe-CCEEEEEEEEEc---CCCcE-------EEEECCEEEECCCCCcCC
Confidence 4667778888775 8999999999999986 789999987431 22322 579999999999998876
No 122
>PRK08401 L-aspartate oxidase; Provisional
Probab=97.79 E-value=0.00011 Score=58.87 Aligned_cols=59 Identities=29% Similarity=0.410 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchhh
Q psy9487 18 GHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLT 94 (101)
Q Consensus 18 ~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l~ 94 (101)
..+.+.|.+.+++.|++++.+ .+++++.+ +++|+||.+. +..+.|+.||+|+|.++.+.
T Consensus 120 ~~i~~~L~~~~~~~gv~i~~~-~v~~l~~~-~g~v~Gv~~~----------------g~~i~a~~VVLATGG~~~~~ 178 (466)
T PRK08401 120 KHIIKILYKHARELGVNFIRG-FAEELAIK-NGKAYGVFLD----------------GELLKFDATVIATGGFSGLF 178 (466)
T ss_pred HHHHHHHHHHHHhcCCEEEEe-EeEEEEee-CCEEEEEEEC----------------CEEEEeCeEEECCCcCcCCC
Confidence 468888999999999999986 78898875 7899999873 35799999999999999763
No 123
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=97.79 E-value=0.00013 Score=60.35 Aligned_cols=65 Identities=20% Similarity=0.319 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHC-CCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487 18 GHVVKWLGEQAEAM-GVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL 93 (101)
Q Consensus 18 ~~~d~~l~~~A~~~-Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l 93 (101)
..+.+.|.+++++. |+++++++.+++++.+ +++|.||...+. .+|+. ..++|+.||+|+|..+.+
T Consensus 132 ~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~-~g~v~Gv~~~~~---~~g~~-------~~i~AkaVILATGG~~~~ 197 (580)
T TIGR01176 132 FHMLHTLFQTSLTYPQIMRYDEWFVTDLLVD-DGRVCGLVAIEM---AEGRL-------VTILADAVVLATGGAGRV 197 (580)
T ss_pred HHHHHHHHHHHHhcCCCEEEeCeEEEEEEee-CCEEEEEEEEEc---CCCcE-------EEEecCEEEEcCCCCccc
Confidence 45777888888774 8999999999999986 789999987541 23332 579999999999998865
No 124
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=97.78 E-value=0.00022 Score=57.75 Aligned_cols=72 Identities=18% Similarity=0.186 Sum_probs=53.9
Q ss_pred CcEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCC
Q psy9487 11 GNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH 90 (101)
Q Consensus 11 ~~~~v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~ 90 (101)
.+..++-..+.+.|++.+++.|++|+++++|+++..++++.+ .|.+.+. .+|+ +.+++|+.||+|+|.|
T Consensus 171 ~~g~Vdp~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~~~v-~v~~~~~---~~g~-------~~~i~A~~VV~AAG~~ 239 (483)
T TIGR01320 171 EGTDVDFGALTKQLLGYLVQNGTTIRFGHEVRNLKRQSDGSW-TVTVKNT---RTGG-------KRTLNTRFVFVGAGGG 239 (483)
T ss_pred CCEEECHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCeE-EEEEeec---cCCc-------eEEEECCEEEECCCcc
Confidence 456788889999999999999999999999999987433333 3443320 1111 2469999999999999
Q ss_pred chh
Q psy9487 91 GHL 93 (101)
Q Consensus 91 s~l 93 (101)
+.-
T Consensus 240 s~~ 242 (483)
T TIGR01320 240 ALP 242 (483)
T ss_pred hHH
Confidence 864
No 125
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=97.78 E-value=0.00022 Score=54.37 Aligned_cols=63 Identities=19% Similarity=0.225 Sum_probs=49.3
Q ss_pred CcEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCC
Q psy9487 11 GNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH 90 (101)
Q Consensus 11 ~~~~v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~ 90 (101)
+|++ +-..+...+.+++.+.|++++++++|+++..+ ++. +.|.+.+ ..+.|+.||+|+|+|
T Consensus 143 ~g~v-~p~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~-~~~-~~v~~~~----------------g~~~a~~vV~A~G~~ 203 (376)
T PRK11259 143 GGFL-RPELAIKAHLRLAREAGAELLFNEPVTAIEAD-GDG-VTVTTAD----------------GTYEAKKLVVSAGAW 203 (376)
T ss_pred CCEE-cHHHHHHHHHHHHHHCCCEEECCCEEEEEEee-CCe-EEEEeCC----------------CEEEeeEEEEecCcc
Confidence 4554 45567777788999999999999999999885 443 4476654 369999999999998
Q ss_pred ch
Q psy9487 91 GH 92 (101)
Q Consensus 91 s~ 92 (101)
+.
T Consensus 204 ~~ 205 (376)
T PRK11259 204 VK 205 (376)
T ss_pred hh
Confidence 64
No 126
>PRK08071 L-aspartate oxidase; Provisional
Probab=97.78 E-value=9e-05 Score=60.20 Aligned_cols=62 Identities=19% Similarity=0.283 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487 19 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL 93 (101)
Q Consensus 19 ~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l 93 (101)
.+.+.|.++++ .||+|++++.|++++.+ +++|.||.+.+ .+++. ..++|+.||+|+|.++.+
T Consensus 131 ~i~~~L~~~~~-~gV~i~~~~~v~~Li~~-~g~v~Gv~~~~----~~g~~-------~~i~Ak~VVlATGG~~~~ 192 (510)
T PRK08071 131 NLLEHLLQELV-PHVTVVEQEMVIDLIIE-NGRCIGVLTKD----SEGKL-------KRYYADYVVLASGGCGGL 192 (510)
T ss_pred HHHHHHHHHHh-cCCEEEECeEhhheeec-CCEEEEEEEEE----CCCcE-------EEEEcCeEEEecCCCccc
Confidence 35667777776 69999999999999985 78999998865 23332 479999999999998864
No 127
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.75 E-value=0.00014 Score=60.12 Aligned_cols=65 Identities=23% Similarity=0.298 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHCC----CEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487 19 HVVKWLGEQAEAMG----VEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL 93 (101)
Q Consensus 19 ~~d~~l~~~A~~~G----v~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l 93 (101)
.+-+.|.+++++.+ +++++++.+++++.+++++|+||.+.+. .+++. ..+.|+.||+|+|..+.+
T Consensus 134 ~i~~~L~~~~~~~~~~~~i~i~~~~~~~~Li~~~~g~v~Gv~~~~~---~~g~~-------~~i~AkaVILATGG~~~~ 202 (589)
T PRK08641 134 QLLYALDEQVRRYEVAGLVTKYEGWEFLGAVLDDEGVCRGIVAQDL---FTMEI-------ESFPADAVIMATGGPGII 202 (589)
T ss_pred HHHHHHHHHHHhhhccCCcEEEeeEEEEEEEECCCCEEEEEEEEEC---CCCcE-------EEEECCEEEECCCCCcCC
Confidence 35667777777654 8899999999999865689999998652 12221 468999999999998864
No 128
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.74 E-value=0.00015 Score=59.63 Aligned_cols=64 Identities=25% Similarity=0.339 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHH-CCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487 19 HVVKWLGEQAEA-MGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL 93 (101)
Q Consensus 19 ~~d~~l~~~A~~-~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l 93 (101)
.+.+.|.+++++ .|+++++++.+++++.+ +++|+||...+. .+++. ..++|+.||+|+|..+.+
T Consensus 138 ~i~~~L~~~~~~~~gv~i~~~~~v~~Li~~-~g~v~Gv~~~~~---~~g~~-------~~i~Ak~VIlATGG~~~~ 202 (577)
T PRK06069 138 YIMHTLYSRALRFDNIHFYDEHFVTSLIVE-NGVFKGVTAIDL---KRGEF-------KVFQAKAGIIATGGAGRL 202 (577)
T ss_pred HHHHHHHHHHHhcCCCEEEECCEEEEEEEE-CCEEEEEEEEEc---CCCeE-------EEEECCcEEEcCchhccc
Confidence 366777888876 69999999999999986 789999987531 12221 468999999999998765
No 129
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=97.73 E-value=0.00013 Score=61.25 Aligned_cols=61 Identities=20% Similarity=0.329 Sum_probs=49.7
Q ss_pred EEEhHHHHHHHHHHHHHC-CCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCc
Q psy9487 14 VVRLGHVVKWLGEQAEAM-GVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG 91 (101)
Q Consensus 14 ~v~r~~~d~~l~~~A~~~-Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s 91 (101)
.++|..+.++|.+.+++. |++++. +.|.+++.+ +++|.||.+.+ |..|.|+.||+|+|.++
T Consensus 96 QiDr~ly~kaL~e~L~~~~nV~I~q-~~V~~Li~e-~grV~GV~t~d---------------G~~I~Ak~VIlATGTFL 157 (618)
T PRK05192 96 QADRKLYRAAMREILENQPNLDLFQ-GEVEDLIVE-NGRVVGVVTQD---------------GLEFRAKAVVLTTGTFL 157 (618)
T ss_pred hcCHHHHHHHHHHHHHcCCCcEEEE-eEEEEEEec-CCEEEEEEECC---------------CCEEECCEEEEeeCcch
Confidence 466777778887878766 899875 578999885 78999999976 56899999999999765
No 130
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=97.71 E-value=0.00014 Score=61.05 Aligned_cols=62 Identities=19% Similarity=0.373 Sum_probs=51.3
Q ss_pred EEEhHHHHHHHHHHHHHC-CCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCc
Q psy9487 14 VVRLGHVVKWLGEQAEAM-GVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG 91 (101)
Q Consensus 14 ~v~r~~~d~~l~~~A~~~-Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s 91 (101)
.++|..+-++|.+.+++. |++++.+ .|.+++.++++++.||.+.+ |..+.|+.||+|+|.|.
T Consensus 92 QVDr~~y~~~L~e~Le~~pgV~Ile~-~Vv~li~e~~g~V~GV~t~~---------------G~~I~Ad~VILATGtfL 154 (617)
T TIGR00136 92 QIDKVLYRKAMRNALENQPNLSLFQG-EVEDLILEDNDEIKGVVTQD---------------GLKFRAKAVIITTGTFL 154 (617)
T ss_pred hCCHHHHHHHHHHHHHcCCCcEEEEe-EEEEEEEecCCcEEEEEECC---------------CCEEECCEEEEccCccc
Confidence 667777788988888888 7888876 67888764467999999976 46899999999999995
No 131
>PRK07512 L-aspartate oxidase; Provisional
Probab=97.71 E-value=0.00012 Score=59.44 Aligned_cols=62 Identities=26% Similarity=0.436 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHC-CCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487 19 HVVKWLGEQAEAM-GVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL 93 (101)
Q Consensus 19 ~~d~~l~~~A~~~-Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l 93 (101)
.+.+.|.+++++. ||+|++++.|++++.+ +++|+||.+.+. +. -..++|+.||+|+|..+.+
T Consensus 137 ~l~~~L~~~~~~~~gV~i~~~~~v~~Li~~-~g~v~Gv~~~~~-----~~-------~~~i~Ak~VVLATGG~~~~ 199 (513)
T PRK07512 137 AIMRALIAAVRATPSITVLEGAEARRLLVD-DGAVAGVLAATA-----GG-------PVVLPARAVVLATGGIGGL 199 (513)
T ss_pred HHHHHHHHHHHhCCCCEEEECcChhheeec-CCEEEEEEEEeC-----Ce-------EEEEECCEEEEcCCCCcCC
Confidence 5777888888875 9999999999999885 789999987641 11 1369999999999998754
No 132
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=97.69 E-value=0.00022 Score=55.43 Aligned_cols=65 Identities=14% Similarity=0.216 Sum_probs=48.3
Q ss_pred EhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCch
Q psy9487 16 RLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH 92 (101)
Q Consensus 16 ~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~ 92 (101)
+-..+.+.|.+.|++.|++|+++++|+++..+ ++.+. +.+.+. ++.+ +.+++|+.||+|+|+|+.
T Consensus 195 ~~~~~~~~l~~~a~~~G~~i~~~~~V~~i~~~-~~~~~-v~~~~~----~~~~------~~~i~a~~vV~a~G~~s~ 259 (410)
T PRK12409 195 DIHKFTTGLAAACARLGVQFRYGQEVTSIKTD-GGGVV-LTVQPS----AEHP------SRTLEFDGVVVCAGVGSR 259 (410)
T ss_pred CHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEe-CCEEE-EEEEcC----CCCc------cceEecCEEEECCCcChH
Confidence 44578888899999999999999999999874 45443 444331 0000 146999999999999974
No 133
>PLN02815 L-aspartate oxidase
Probab=97.64 E-value=0.00019 Score=59.71 Aligned_cols=65 Identities=25% Similarity=0.372 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHC-CCEEecCCceeEEEEecCC---cEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487 19 HVVKWLGEQAEAM-GVEIYPGIPASEVLYHGDG---SVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL 93 (101)
Q Consensus 19 ~~d~~l~~~A~~~-Gv~i~~gt~v~~i~~~~~g---~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l 93 (101)
.+.+.|.+++++. |++|++++.+++++.++++ +|+||.+.+. .+|+. ..|.|+.||+|+|..+.+
T Consensus 156 ~i~~~L~~~~~~~~~i~i~~~~~~~~Li~~~~g~~~~v~Gv~~~~~---~~g~~-------~~i~AkaVILATGG~g~~ 224 (594)
T PLN02815 156 EIERALLEAVKNDPNITFFEHHFAIDLLTSQDGGSIVCHGADVLDT---RTGEV-------VRFISKVTLLASGGAGHI 224 (594)
T ss_pred HHHHHHHHHHHhcCCCEEEeceEhheeeeecCCCccEEEEEEEEEc---CCCeE-------EEEEeceEEEcCCcceee
Confidence 4667788888775 9999999999999986444 3999987531 23332 578999999999988754
No 134
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=97.64 E-value=0.0003 Score=56.83 Aligned_cols=67 Identities=31% Similarity=0.374 Sum_probs=54.8
Q ss_pred CCcEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeE-EEccEEEEeec
Q psy9487 10 HGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGME-LHAKVTIFAEG 88 (101)
Q Consensus 10 ~~~~~v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~-i~A~~VI~A~G 88 (101)
..+.+++=..+...|++.|++.|+++..+++|++|..++|| +.-+.+.. |.+ ++|+.||.|+|
T Consensus 145 p~~giV~~~~~t~~l~e~a~~~g~~i~ln~eV~~i~~~~dg-~~~~~~~~---------------g~~~~~ak~Vin~AG 208 (429)
T COG0579 145 PSGGIVDPGELTRALAEEAQANGVELRLNTEVTGIEKQSDG-VFVLNTSN---------------GEETLEAKFVINAAG 208 (429)
T ss_pred CCCceEcHHHHHHHHHHHHHHcCCEEEecCeeeEEEEeCCc-eEEEEecC---------------CcEEEEeeEEEECCc
Confidence 35788888899999999999999999999999999986454 55455543 334 99999999999
Q ss_pred CCch
Q psy9487 89 CHGH 92 (101)
Q Consensus 89 ~~s~ 92 (101)
-.+-
T Consensus 209 l~Ad 212 (429)
T COG0579 209 LYAD 212 (429)
T ss_pred hhHH
Confidence 7764
No 135
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.63 E-value=0.00027 Score=58.91 Aligned_cols=65 Identities=17% Similarity=0.290 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHC--------C-----CEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEE
Q psy9487 18 GHVVKWLGEQAEAM--------G-----VEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTI 84 (101)
Q Consensus 18 ~~~d~~l~~~A~~~--------G-----v~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI 84 (101)
..+.+.|.+++++. | ++|++++.|++++.+ +++|.||...+. .+++. ..|+|+.||
T Consensus 138 ~~i~~~L~~~~~~~~~~~~~~~G~~~~~v~i~~~~~v~~L~~~-~g~v~Gv~~~~~---~~g~~-------~~i~Ak~VV 206 (626)
T PRK07803 138 LELIRTLQQKIVSLQQEDHAELGDYEARIKVFAECTITELLKD-GGRIAGAFGYWR---ESGRF-------VLFEAPAVV 206 (626)
T ss_pred HHHHHHHHHHHHhhhccccccccCCcCceEEEeCCEEEEEEEE-CCEEEEEEEEEC---CCCeE-------EEEEcCeEE
Confidence 35667778888877 7 999999999999986 789999976531 12321 479999999
Q ss_pred EeecCCchh
Q psy9487 85 FAEGCHGHL 93 (101)
Q Consensus 85 ~A~G~~s~l 93 (101)
+|+|..+.+
T Consensus 207 lATGG~~~~ 215 (626)
T PRK07803 207 LATGGIGKS 215 (626)
T ss_pred ECCCcccCC
Confidence 999987755
No 136
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=97.63 E-value=0.00021 Score=59.50 Aligned_cols=60 Identities=17% Similarity=0.147 Sum_probs=49.7
Q ss_pred EEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCch
Q psy9487 15 VRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH 92 (101)
Q Consensus 15 v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~ 92 (101)
++-..+.+.|++.+++ |++++++++|+++..+ ++.+. |.+.+ +..+.|+.||+|+|+|+.
T Consensus 405 v~p~~l~~aL~~~a~~-Gv~i~~~~~V~~i~~~-~~~~~-v~t~~---------------g~~~~ad~VV~A~G~~s~ 464 (662)
T PRK01747 405 LCPAELCRALLALAGQ-QLTIHFGHEVARLERE-DDGWQ-LDFAG---------------GTLASAPVVVLANGHDAA 464 (662)
T ss_pred eCHHHHHHHHHHhccc-CcEEEeCCEeeEEEEe-CCEEE-EEECC---------------CcEEECCEEEECCCCCcc
Confidence 4677999999999999 9999999999999875 55554 66654 346789999999999975
No 137
>PRK09077 L-aspartate oxidase; Provisional
Probab=97.62 E-value=0.00024 Score=57.97 Aligned_cols=66 Identities=17% Similarity=0.158 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHC-CCEEecCCceeEEEEec-----CCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCc
Q psy9487 18 GHVVKWLGEQAEAM-GVEIYPGIPASEVLYHG-----DGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG 91 (101)
Q Consensus 18 ~~~d~~l~~~A~~~-Gv~i~~gt~v~~i~~~~-----~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s 91 (101)
..+.+.|.+++++. |++|++++.+.+++.++ +++|+||...+. .+++. ..|+|+.||+|+|..+
T Consensus 138 ~~i~~~L~~~~~~~~~I~v~~~~~v~~Li~~~~~~~~~g~v~Gv~~~~~---~~g~~-------~~i~Ak~VVlATGG~~ 207 (536)
T PRK09077 138 KAVQTTLVERARNHPNITVLERHNAIDLITSDKLGLPGRRVVGAYVLNR---NKERV-------ETIRAKFVVLATGGAS 207 (536)
T ss_pred HHHHHHHHHHHHhCCCcEEEeeEEeeeeeecccccCCCCEEEEEEEEEC---CCCcE-------EEEecCeEEECCCCCC
Confidence 35777888888775 89999999999999852 379999987641 22332 5799999999999988
Q ss_pred hh
Q psy9487 92 HL 93 (101)
Q Consensus 92 ~l 93 (101)
.+
T Consensus 208 ~~ 209 (536)
T PRK09077 208 KV 209 (536)
T ss_pred CC
Confidence 64
No 138
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=97.60 E-value=0.00041 Score=56.57 Aligned_cols=60 Identities=28% Similarity=0.360 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487 18 GHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL 93 (101)
Q Consensus 18 ~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l 93 (101)
....+-+.+..+++|++|++.|.|.++.++ ++.+.+|.+.+ |.+|.++.||+|-|..+.-
T Consensus 173 ~~vvkni~~~l~~~G~ei~f~t~VeDi~~~-~~~~~~v~~~~---------------g~~i~~~~vvlA~Grsg~d 232 (486)
T COG2509 173 PKVVKNIREYLESLGGEIRFNTEVEDIEIE-DNEVLGVKLTK---------------GEEIEADYVVLAPGRSGRD 232 (486)
T ss_pred HHHHHHHHHHHHhcCcEEEeeeEEEEEEec-CCceEEEEccC---------------CcEEecCEEEEccCcchHH
Confidence 456677899999999999999999999995 77889999876 6799999999999987764
No 139
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=97.60 E-value=0.00036 Score=58.37 Aligned_cols=65 Identities=18% Similarity=0.190 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHCCCEEecCCceeEEEEecC--CcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487 19 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGD--GSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL 93 (101)
Q Consensus 19 ~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~--g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l 93 (101)
.+.+.|...+++.++++++++.+++++.+++ |+|+||.+.+. .+|+. ..|+|+.||+|+|.++.+
T Consensus 127 ~~~r~l~~~l~~~~~~i~~~~~v~~Ll~d~~~~GrV~Gv~~~~~---~~g~~-------~~i~AkaVVLATGG~~~l 193 (614)
T TIGR02061 127 SYKPIVAEAAKNALGDIFERIFIVKLLLDKNTPNRIAGAVGFNV---RANEV-------HVFKAKTVIVAAGGAVNV 193 (614)
T ss_pred hHHHHHHHHHHhCCCeEEcccEEEEEEecCCCCCeEEEEEEEEe---CCCcE-------EEEECCEEEECCCccccc
Confidence 4556667777788899999999999998632 79999987541 23332 579999999999998754
No 140
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=97.59 E-value=0.00041 Score=54.01 Aligned_cols=66 Identities=17% Similarity=0.133 Sum_probs=51.7
Q ss_pred CcEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCC
Q psy9487 11 GNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH 90 (101)
Q Consensus 11 ~~~~v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~ 90 (101)
...+++|..|+++|.++++ .+..++.++.|.+|.-+ ++ ...|.+.+ |.+++|++||+|+|..
T Consensus 80 ~Y~~i~~~~f~~~l~~~~~-~~~~~~~~~~V~~i~~~-~~-~~~v~~~~---------------g~~i~a~~VvDa~g~~ 141 (374)
T PF05834_consen 80 PYCMIDRADFYEFLLERAA-AGGVIRLNARVTSIEET-GD-GVLVVLAD---------------GRTIRARVVVDARGPS 141 (374)
T ss_pred ceEEEEHHHHHHHHHHHhh-hCCeEEEccEEEEEEec-Cc-eEEEEECC---------------CCEEEeeEEEECCCcc
Confidence 4569999999999999999 45567777899999764 33 34456655 5689999999999977
Q ss_pred chhh
Q psy9487 91 GHLT 94 (101)
Q Consensus 91 s~l~ 94 (101)
+...
T Consensus 142 ~~~~ 145 (374)
T PF05834_consen 142 SPKA 145 (374)
T ss_pred cccc
Confidence 7643
No 141
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=97.57 E-value=0.00043 Score=54.59 Aligned_cols=63 Identities=21% Similarity=0.245 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCC
Q psy9487 18 GHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH 90 (101)
Q Consensus 18 ~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~ 90 (101)
..+-+.|.+.+++.|++|+++++|++|..++++++++|++.+ ..++. -.++.|+.||+|.-.+
T Consensus 213 ~~l~~~l~~~l~~~g~~i~l~~~V~~I~~~~~~~v~~v~~~~----~~~~~------~~~~~a~~VI~a~p~~ 275 (453)
T TIGR02731 213 ERLCQPIVDYITSRGGEVRLNSRLKEIVLNEDGSVKHFVLAD----GEGQR------RFEVTADAYVSAMPVD 275 (453)
T ss_pred HHHHHHHHHHHHhcCCEEeCCCeeEEEEECCCCCEEEEEEec----CCCCc------eeEEECCEEEEcCCHH
Confidence 456778899999999999999999999875567899999854 11110 0269999999998654
No 142
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=97.54 E-value=0.00042 Score=52.91 Aligned_cols=58 Identities=19% Similarity=0.170 Sum_probs=45.9
Q ss_pred EEEEhHHHHHHHHHHHHHC-CCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCc
Q psy9487 13 YVVRLGHVVKWLGEQAEAM-GVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG 91 (101)
Q Consensus 13 ~~v~r~~~d~~l~~~A~~~-Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s 91 (101)
..++=..+.++|++.+++. |++|+++++|+++.. + .|++.+ .+++|+.||+|+|+|+
T Consensus 140 g~v~p~~~~~~l~~~~~~~~Gv~i~~~t~V~~i~~---~---~v~t~~----------------g~i~a~~VV~A~G~~s 197 (365)
T TIGR03364 140 LRVEPREAIPALAAYLAEQHGVEFHWNTAVTSVET---G---TVRTSR----------------GDVHADQVFVCPGADF 197 (365)
T ss_pred eeECHHHHHHHHHHHHHhcCCCEEEeCCeEEEEec---C---eEEeCC----------------CcEEeCEEEECCCCCh
Confidence 3456677888999988875 999999999999853 2 566653 3578999999999986
Q ss_pred h
Q psy9487 92 H 92 (101)
Q Consensus 92 ~ 92 (101)
.
T Consensus 198 ~ 198 (365)
T TIGR03364 198 E 198 (365)
T ss_pred h
Confidence 4
No 143
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=97.52 E-value=0.00024 Score=52.76 Aligned_cols=62 Identities=16% Similarity=0.214 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHC-CCEEecCCceeEEEEe-cCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCC
Q psy9487 20 VVKWLGEQAEAM-GVEIYPGIPASEVLYH-GDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH 90 (101)
Q Consensus 20 ~d~~l~~~A~~~-Gv~i~~gt~v~~i~~~-~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~ 90 (101)
....++..|.+. +++|++++.|++|+++ ++++++||+..+.+ +.. .-..+.++.||+|+|+-
T Consensus 194 ~~~~~L~~a~~~~n~~l~~~~~V~~i~~~~~~~~a~gV~~~~~~----~~~-----~~~~~~ak~VIlaAGai 257 (296)
T PF00732_consen 194 AATTYLPPALKRPNLTLLTNARVTRIIFDGDGGRATGVEYVDND----GGV-----QRRIVAAKEVILAAGAI 257 (296)
T ss_dssp HHHHHHHHHTTTTTEEEEESEEEEEEEEETTSTEEEEEEEEETT----TSE-----EEEEEEEEEEEE-SHHH
T ss_pred hhhcccchhhccCCccEEcCcEEEEEeeeccccceeeeeeeecC----Ccc-----eeeeccceeEEeccCCC
Confidence 334445566666 9999999999999885 36799999998732 210 01568889999999963
No 144
>KOG2844|consensus
Probab=97.52 E-value=0.00017 Score=61.38 Aligned_cols=67 Identities=15% Similarity=0.239 Sum_probs=57.2
Q ss_pred EEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487 14 VVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL 93 (101)
Q Consensus 14 ~v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l 93 (101)
+++=..+.+.|+..|++.||.|+++++|++|... .+...||+|.- ..|++..||.|+|.|+..
T Consensus 183 ~~DP~~lC~ala~~A~~~GA~viE~cpV~~i~~~-~~~~~gVeT~~----------------G~iet~~~VNaaGvWAr~ 245 (856)
T KOG2844|consen 183 VMDPAGLCQALARAASALGALVIENCPVTGLHVE-TDKFGGVETPH----------------GSIETECVVNAAGVWARE 245 (856)
T ss_pred ccCHHHHHHHHHHHHHhcCcEEEecCCcceEEee-cCCccceeccC----------------cceecceEEechhHHHHH
Confidence 5666788999999999999999999999999885 56666999964 569999999999999976
Q ss_pred hHHH
Q psy9487 94 TKSL 97 (101)
Q Consensus 94 ~~~l 97 (101)
-..|
T Consensus 246 Vg~m 249 (856)
T KOG2844|consen 246 VGAM 249 (856)
T ss_pred hhhh
Confidence 5444
No 145
>KOG2820|consensus
Probab=97.49 E-value=0.00055 Score=54.34 Aligned_cols=67 Identities=25% Similarity=0.345 Sum_probs=54.1
Q ss_pred CCCcEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEe-cCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEee
Q psy9487 9 NHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYH-GDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAE 87 (101)
Q Consensus 9 ~~~~~~v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~-~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~ 87 (101)
+.+||+=. .+-.+.|...|+++|+.|+.+..|+.+.+. +++..++|+|.+ |..++|+.+|+|.
T Consensus 145 ~~gGvi~a-~kslk~~~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~---------------gs~Y~akkiI~t~ 208 (399)
T KOG2820|consen 145 ESGGVINA-AKSLKALQDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTD---------------GSIYHAKKIIFTV 208 (399)
T ss_pred ccccEeeH-HHHHHHHHHHHHHcCeEEecCcceeeEeeccCCCceeEEEecc---------------CCeeecceEEEEe
Confidence 44565544 455566799999999999999999998753 357889999987 5789999999999
Q ss_pred cCCc
Q psy9487 88 GCHG 91 (101)
Q Consensus 88 G~~s 91 (101)
|+|-
T Consensus 209 GaWi 212 (399)
T KOG2820|consen 209 GAWI 212 (399)
T ss_pred cHHH
Confidence 9985
No 146
>PRK07395 L-aspartate oxidase; Provisional
Probab=97.49 E-value=0.00035 Score=57.50 Aligned_cols=63 Identities=27% Similarity=0.275 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHH-CCCEEecCCceeEEEEec-CCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487 19 HVVKWLGEQAEA-MGVEIYPGIPASEVLYHG-DGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL 93 (101)
Q Consensus 19 ~~d~~l~~~A~~-~Gv~i~~gt~v~~i~~~~-~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l 93 (101)
.+...|.+++++ .|++|++++.|++++.++ +++|+||.+.+ ++.. ..++|+.||+|+|..+.+
T Consensus 135 ~i~~~L~~~~~~~~gi~i~~~~~v~~Li~~~~~g~v~Gv~~~~-----~g~~-------~~i~AkaVILATGG~~~~ 199 (553)
T PRK07395 135 AIVTTLTEQVLQRPNIEIISQALALSLWLEPETGRCQGISLLY-----QGQI-------TWLRAGAVILATGGGGQV 199 (553)
T ss_pred HHHHHHHHHHhhcCCcEEEECcChhhheecCCCCEEEEEEEEE-----CCeE-------EEEEcCEEEEcCCCCccc
Confidence 456677888875 499999999999999863 38999998753 2221 468999999999987543
No 147
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=97.47 E-value=0.00063 Score=54.58 Aligned_cols=56 Identities=29% Similarity=0.281 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCC
Q psy9487 18 GHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH 90 (101)
Q Consensus 18 ~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~ 90 (101)
+.+.+.|..++++.||+|++.++|.++..+ + ....+.+.+ |.+|+++.+|+|+|..
T Consensus 111 ~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~-~-~~f~l~t~~---------------g~~i~~d~lilAtGG~ 166 (408)
T COG2081 111 SPIVDALLKELEALGVTIRTRSRVSSVEKD-D-SGFRLDTSS---------------GETVKCDSLILATGGK 166 (408)
T ss_pred HHHHHHHHHHHHHcCcEEEecceEEeEEec-C-ceEEEEcCC---------------CCEEEccEEEEecCCc
Confidence 455666799999999999999999999985 3 445567665 4589999999999943
No 148
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=97.44 E-value=0.00017 Score=61.36 Aligned_cols=57 Identities=12% Similarity=0.232 Sum_probs=47.5
Q ss_pred EEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487 14 VVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL 93 (101)
Q Consensus 14 ~v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l 93 (101)
.++|..|++.|.++|+++||+|+++++++++. + ..+.+|+||.|||.+|.+
T Consensus 93 ~i~R~~L~~~L~e~a~~~GV~i~~g~~v~~i~-------------~----------------~~~~~D~VVgADG~~S~v 143 (765)
T PRK08255 93 GIGRKRLLNILQARCEELGVKLVFETEVPDDQ-------------A----------------LAADADLVIASDGLNSRI 143 (765)
T ss_pred cCCHHHHHHHHHHHHHHcCCEEEeCCccCchh-------------h----------------hhcCCCEEEEcCCCCHHH
Confidence 58999999999999999999999998876541 0 125789999999999999
Q ss_pred hHHHhh
Q psy9487 94 TKSLSS 99 (101)
Q Consensus 94 ~~~l~~ 99 (101)
.+++..
T Consensus 144 R~~~~~ 149 (765)
T PRK08255 144 RTRYAD 149 (765)
T ss_pred HHHHHh
Confidence 887653
No 149
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=97.41 E-value=0.0013 Score=53.49 Aligned_cols=73 Identities=21% Similarity=0.247 Sum_probs=54.0
Q ss_pred CcEEEEhHHHHHHHHHHHHHCC-CEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecC
Q psy9487 11 GNYVVRLGHVVKWLGEQAEAMG-VEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGC 89 (101)
Q Consensus 11 ~~~~v~r~~~d~~l~~~A~~~G-v~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~ 89 (101)
.++.++=..+.+.|.+.+++.| ++|+++++|+++..++++++. |.+.+. .+|+ +.+++|+.||+|+|.
T Consensus 176 ~~g~Vd~~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~dg~~~-v~~~~~---~~G~-------~~~i~A~~VVvaAGg 244 (494)
T PRK05257 176 IGTDVNFGALTRQLVGYLQKQGNFELQLGHEVRDIKRNDDGSWT-VTVKDL---KTGE-------KRTVRAKFVFIGAGG 244 (494)
T ss_pred CceEECHHHHHHHHHHHHHhCCCeEEEeCCEEEEEEECCCCCEE-EEEEEc---CCCc-------eEEEEcCEEEECCCc
Confidence 3567888899999999999987 899999999999875444443 444210 1111 136999999999999
Q ss_pred Cchhh
Q psy9487 90 HGHLT 94 (101)
Q Consensus 90 ~s~l~ 94 (101)
|+.--
T Consensus 245 ~s~~L 249 (494)
T PRK05257 245 GALPL 249 (494)
T ss_pred chHHH
Confidence 98653
No 150
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.37 E-value=0.00069 Score=54.77 Aligned_cols=58 Identities=29% Similarity=0.402 Sum_probs=48.8
Q ss_pred EhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecC
Q psy9487 16 RLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGC 89 (101)
Q Consensus 16 ~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~ 89 (101)
....+.+.|.+.|++.|++|+++++|++|+.+ +|+.+++.+.+ |..+.|+.||.+...
T Consensus 222 G~~al~~aL~~~~~~~Gg~I~~~~~V~~I~v~-~g~g~~~~~~~---------------g~~~~ad~vv~~~~~ 279 (487)
T COG1233 222 GMGALVDALAELAREHGGEIRTGAEVSQILVE-GGKGVGVRTSD---------------GENIEADAVVSNADP 279 (487)
T ss_pred CHHHHHHHHHHHHHHcCCEEECCCceEEEEEe-CCcceEEeccc---------------cceeccceeEecCch
Confidence 35788999999999999999999999999996 77767777654 347899999988665
No 151
>PLN02612 phytoene desaturase
Probab=97.37 E-value=0.00099 Score=54.92 Aligned_cols=56 Identities=16% Similarity=0.210 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecC
Q psy9487 19 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGC 89 (101)
Q Consensus 19 ~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~ 89 (101)
.+.+.|.+..+++|++|+++++|++|..++++++++|++.+ |.++.||.||+|...
T Consensus 309 ~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~v~~~~---------------G~~~~ad~VI~a~p~ 364 (567)
T PLN02612 309 RLCMPIVDHFQSLGGEVRLNSRIKKIELNDDGTVKHFLLTN---------------GSVVEGDVYVSATPV 364 (567)
T ss_pred HHHHHHHHHHHhcCCEEEeCCeeeEEEECCCCcEEEEEECC---------------CcEEECCEEEECCCH
Confidence 46677788888899999999999999986577788888865 467999999999753
No 152
>KOG4254|consensus
Probab=97.35 E-value=0.00035 Score=57.25 Aligned_cols=62 Identities=23% Similarity=0.387 Sum_probs=54.9
Q ss_pred EhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487 16 RLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL 93 (101)
Q Consensus 16 ~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l 93 (101)
..+.+...+++-|++.|++|+++..|.+|+.| +|.++||++.+ |.++++++||-=++.|-..
T Consensus 262 G~Gavs~aia~~~~~~GaeI~tka~Vq~Illd-~gka~GV~L~d---------------G~ev~sk~VvSNAt~~~Tf 323 (561)
T KOG4254|consen 262 GMGAVSFAIAEGAKRAGAEIFTKATVQSILLD-SGKAVGVRLAD---------------GTEVRSKIVVSNATPWDTF 323 (561)
T ss_pred ChhHHHHHHHHHHHhccceeeehhhhhheecc-CCeEEEEEecC---------------CcEEEeeeeecCCchHHHH
Confidence 35677888999999999999999999999997 79999999987 7899999999887777655
No 153
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=97.35 E-value=0.0012 Score=52.84 Aligned_cols=63 Identities=11% Similarity=0.119 Sum_probs=50.0
Q ss_pred hHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCC
Q psy9487 17 LGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH 90 (101)
Q Consensus 17 r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~ 90 (101)
...+...|.+.+++.|++|+++++|++|+.+ ++++.+|.+.+. .+++ +.++.||.||.+.-++
T Consensus 231 ~~~l~~aL~~~~~~~G~~i~~~~~V~~I~~~-~~~~~gv~~~~~---~~~~-------~~~~~ad~VI~~~~~~ 293 (492)
T TIGR02733 231 MQTLSDRLVEALKRDGGNLLTGQRVTAIHTK-GGRAGWVVVVDS---RKQE-------DLNVKADDVVANLPPQ 293 (492)
T ss_pred HHHHHHHHHHHHHhcCCEEeCCceEEEEEEe-CCeEEEEEEecC---CCCc-------eEEEECCEEEECCCHH
Confidence 6778889999999999999999999999986 678888887541 0111 2579999999997653
No 154
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=97.35 E-value=0.0011 Score=55.45 Aligned_cols=77 Identities=16% Similarity=0.198 Sum_probs=54.9
Q ss_pred CCCCCCCCcEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEe-cC--CcEEEEEeccccccCCCCCCcCCCCCeEEEc
Q psy9487 4 GMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYH-GD--GSVKGIATGDVGIAKDGSPKDTFARGMELHA 80 (101)
Q Consensus 4 ~~~~~~~~~~~v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~-~~--g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A 80 (101)
|..+.+++-| ..+.+-|.+.+++.||+|+++++|++|.++ ++ ++|+||.+...| +... -....+
T Consensus 216 ~l~ft~ynqy----eSLV~PL~~~Le~~GV~f~~~t~VtdL~~~~d~~~~~VtgI~~~~~~--~~~~-------I~l~~~ 282 (576)
T PRK13977 216 GLKFTKYNQY----ESLVLPLIKYLEDHGVDFQYGTKVTDIDFDITGGKKTATAIHLTRNG--KEET-------IDLTED 282 (576)
T ss_pred cccCCCCCch----hHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCCceEEEEEEEEeCC--ceeE-------EEecCC
Confidence 3445555544 556777899999999999999999999985 23 689999986421 1111 134667
Q ss_pred cEEEEeecCCchh
Q psy9487 81 KVTIFAEGCHGHL 93 (101)
Q Consensus 81 ~~VI~A~G~~s~l 93 (101)
|+||+|+|+....
T Consensus 283 DlVivTnGs~t~n 295 (576)
T PRK13977 283 DLVFVTNGSITES 295 (576)
T ss_pred CEEEEeCCcCccc
Confidence 9999999976543
No 155
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=97.33 E-value=0.00087 Score=51.09 Aligned_cols=63 Identities=22% Similarity=0.262 Sum_probs=51.0
Q ss_pred EEEEhHHHHHHHHHHHHHCC-CEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCc
Q psy9487 13 YVVRLGHVVKWLGEQAEAMG-VEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG 91 (101)
Q Consensus 13 ~~v~r~~~d~~l~~~A~~~G-v~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s 91 (101)
..++=..+.+.|++.++++| +.+...+++..+..+ . ++++|++.+ .++.|+.||+|+|+|+
T Consensus 151 ~~~~p~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~-~-~~~~v~t~~----------------g~i~a~~vv~a~G~~~ 212 (387)
T COG0665 151 GHLDPRLLTRALAAAAEELGVVIIEGGTPVTSLERD-G-RVVGVETDG----------------GTIEADKVVLAAGAWA 212 (387)
T ss_pred CcCCHHHHHHHHHHHHHhcCCeEEEccceEEEEEec-C-cEEEEEeCC----------------ccEEeCEEEEcCchHH
Confidence 34455678889999999999 566668899998764 4 888899976 4499999999999997
Q ss_pred hh
Q psy9487 92 HL 93 (101)
Q Consensus 92 ~l 93 (101)
..
T Consensus 213 ~~ 214 (387)
T COG0665 213 GE 214 (387)
T ss_pred HH
Confidence 64
No 156
>KOG1298|consensus
Probab=97.33 E-value=0.00052 Score=55.48 Aligned_cols=75 Identities=28% Similarity=0.503 Sum_probs=61.0
Q ss_pred cEEEEhHHHHHHHHHHHHH-CCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCC
Q psy9487 12 NYVVRLGHVVKWLGEQAEA-MGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH 90 (101)
Q Consensus 12 ~~~v~r~~~d~~l~~~A~~-~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~ 90 (101)
|-..+-.+|.+-|.++|.. -+|++.+| +|.+++-| ++.|+||+..+ +.|+. .+..|.++|++||+.
T Consensus 141 GrsFhnGRFvq~lR~ka~slpNV~~eeG-tV~sLlee-~gvvkGV~yk~----k~gee-------~~~~ApLTvVCDGcf 207 (509)
T KOG1298|consen 141 GRSFHNGRFVQRLRKKAASLPNVRLEEG-TVKSLLEE-EGVVKGVTYKN----KEGEE-------VEAFAPLTVVCDGCF 207 (509)
T ss_pred cceeeccHHHHHHHHHHhcCCCeEEeee-eHHHHHhc-cCeEEeEEEec----CCCce-------EEEecceEEEecchh
Confidence 6666777899999998866 56888887 67888775 78999999986 44443 689999999999999
Q ss_pred chhhHHHhh
Q psy9487 91 GHLTKSLSS 99 (101)
Q Consensus 91 s~l~~~l~~ 99 (101)
|.+.|.|..
T Consensus 208 SnlRrsL~~ 216 (509)
T KOG1298|consen 208 SNLRRSLCD 216 (509)
T ss_pred HHHHHHhcC
Confidence 999988754
No 157
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=97.25 E-value=0.0019 Score=52.06 Aligned_cols=60 Identities=20% Similarity=0.319 Sum_probs=51.0
Q ss_pred hHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCc
Q psy9487 17 LGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG 91 (101)
Q Consensus 17 r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s 91 (101)
...+-+.|.+.++..|.+++++++|++|.+++++++++|++.+ |.+++|+.||.....+.
T Consensus 231 ~g~L~qal~r~~a~~Gg~~~L~~~V~~I~~~~~g~~~~V~~~~---------------Ge~i~a~~VV~~~s~~p 290 (443)
T PTZ00363 231 LGGLPQAFSRLCAIYGGTYMLNTPVDEVVFDENGKVCGVKSEG---------------GEVAKCKLVICDPSYFP 290 (443)
T ss_pred HHHHHHHHHHHHHHcCcEEEcCCeEEEEEEcCCCeEEEEEECC---------------CcEEECCEEEECccccc
Confidence 4578899999999999999999999999987557899999865 56899999998665553
No 158
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=97.15 E-value=0.0012 Score=53.61 Aligned_cols=61 Identities=11% Similarity=0.090 Sum_probs=44.7
Q ss_pred hHHHHHHHHHHHH-HCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecC
Q psy9487 17 LGHVVKWLGEQAE-AMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGC 89 (101)
Q Consensus 17 r~~~d~~l~~~A~-~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~ 89 (101)
|......++..|+ +.+++|++++.|++|+++ +++++||+..+.+ +. ...+.++.||+|+|+
T Consensus 192 r~s~~~~~l~~a~~r~nl~i~~~~~V~rI~~~-~~ra~GV~~~~~~----~~-------~~~~~ak~VIlaAGa 253 (532)
T TIGR01810 192 RVSAARAYLHPAMKRPNLEVQTRAFVTKINFE-GNRATGVEFKKGG----RK-------EHTEANKEVILSAGA 253 (532)
T ss_pred EEcHHHHHhhhhccCCCeEEEeCCEEEEEEec-CCeEEEEEEEeCC----cE-------EEEEEeeeEEEccCC
Confidence 4343444455665 567999999999999996 7899999986511 11 134689999999998
No 159
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=97.10 E-value=0.0033 Score=49.52 Aligned_cols=57 Identities=26% Similarity=0.312 Sum_probs=46.2
Q ss_pred hHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCc
Q psy9487 17 LGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG 91 (101)
Q Consensus 17 r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s 91 (101)
...+.+.|.+.+++.|+++++++.|+++..+ ++ ...|++. +.++.++.||+|+|.++
T Consensus 104 a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~-~~-~~~v~~~----------------~~~i~ad~VIlAtG~~s 160 (400)
T TIGR00275 104 AADVLDALLNELKELGVEILTNSKVKSIKKD-DN-GFGVETS----------------GGEYEADKVILATGGLS 160 (400)
T ss_pred HHHHHHHHHHHHHHCCCEEEeCCEEEEEEec-CC-eEEEEEC----------------CcEEEcCEEEECCCCcc
Confidence 4677888899999999999999999999764 33 4556653 24799999999999876
No 160
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=97.09 E-value=0.0034 Score=49.88 Aligned_cols=57 Identities=14% Similarity=0.097 Sum_probs=43.6
Q ss_pred hHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCc
Q psy9487 17 LGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG 91 (101)
Q Consensus 17 r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s 91 (101)
-+.+...|..+++++||+|+++++|++| + ++. ..+.+... +..++|+.||+|+|..+
T Consensus 85 A~sVv~~L~~~l~~~gV~i~~~~~V~~i--~-~~~-~~v~~~~~--------------~~~~~a~~vIlAtGG~s 141 (376)
T TIGR03862 85 AAPLLRAWLKRLAEQGVQFHTRHRWIGW--Q-GGT-LRFETPDG--------------QSTIEADAVVLALGGAS 141 (376)
T ss_pred HHHHHHHHHHHHHHCCCEEEeCCEEEEE--e-CCc-EEEEECCC--------------ceEEecCEEEEcCCCcc
Confidence 3456667789999999999999999998 3 333 45666320 24699999999999865
No 161
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=97.08 E-value=0.0038 Score=51.15 Aligned_cols=72 Identities=15% Similarity=0.162 Sum_probs=51.7
Q ss_pred CcEEEEhHHHHHHHHHHHHH-CCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecC
Q psy9487 11 GNYVVRLGHVVKWLGEQAEA-MGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGC 89 (101)
Q Consensus 11 ~~~~v~r~~~d~~l~~~A~~-~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~ 89 (101)
++..++-..+.+.|.+.+++ .|++++++++|+++..++++.+. |.+.+. .+++ ..+++|+.||+|+|+
T Consensus 177 ~~~~VD~~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d~~w~-v~v~~t---~~g~-------~~~i~Ad~VV~AAGa 245 (497)
T PRK13339 177 EGTDVNFGALTRKLAKHLESHPNAQVKYNHEVVDLERLSDGGWE-VTVKDR---NTGE-------KREQVADYVFIGAGG 245 (497)
T ss_pred CceecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEECCCCCEE-EEEEec---CCCc-------eEEEEcCEEEECCCc
Confidence 46778888999999999965 59999999999999874244443 332110 0110 136999999999999
Q ss_pred Cchh
Q psy9487 90 HGHL 93 (101)
Q Consensus 90 ~s~l 93 (101)
|+.-
T Consensus 246 wS~~ 249 (497)
T PRK13339 246 GAIP 249 (497)
T ss_pred chHH
Confidence 9953
No 162
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=96.97 E-value=0.0036 Score=54.22 Aligned_cols=63 Identities=27% Similarity=0.276 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHC----CCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487 20 VVKWLGEQAEAM----GVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL 93 (101)
Q Consensus 20 ~d~~l~~~A~~~----Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l 93 (101)
+-+.|.+.+++. ++.+++.+.+.+++.+ +|+|+||...+. .+|+. ..|+|+.||+|+|..+.+
T Consensus 141 i~~~L~~~l~~~~~~~~i~~~~~~~~~~Li~~-~g~v~Gv~~~~~---~~g~~-------~~i~AkaVILATGG~g~~ 207 (897)
T PRK13800 141 VKKALYRVLRQRSMRERIRIENRLMPVRVLTE-GGRAVGAAALNT---RTGEF-------VTVGAKAVILATGPCGRL 207 (897)
T ss_pred HHHHHHHHHHHhhhcCCcEEEeceeeEEEEee-CCEEEEEEEEec---CCCcE-------EEEECCEEEECCCccccC
Confidence 334556665543 7899999899999985 789999987541 23432 579999999999998765
No 163
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=96.83 E-value=0.0088 Score=48.06 Aligned_cols=58 Identities=22% Similarity=0.326 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCC
Q psy9487 19 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH 90 (101)
Q Consensus 19 ~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~ 90 (101)
.+.+.|.+..++.|+++++++.|.++..+ ++++..+.+.+ ++ ...+.||.||+|+|..
T Consensus 260 rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~-~~~V~~v~~~~------g~-------~~~i~AD~VVLAtGrf 317 (422)
T PRK05329 260 RLQNALRRAFERLGGRIMPGDEVLGAEFE-GGRVTAVWTRN------HG-------DIPLRARHFVLATGSF 317 (422)
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEEe-CCEEEEEEeeC------Cc-------eEEEECCEEEEeCCCc
Confidence 57778888999999999999999999885 66777665422 11 1579999999999975
No 164
>PRK07233 hypothetical protein; Provisional
Probab=96.80 E-value=0.0065 Score=46.90 Aligned_cols=56 Identities=29% Similarity=0.364 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCC
Q psy9487 18 GHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH 90 (101)
Q Consensus 18 ~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~ 90 (101)
..+.+.|.+.+++.|++|+++++|++|..+ +++++.+... +..+.|+.||+|....
T Consensus 198 ~~l~~~l~~~l~~~g~~v~~~~~V~~i~~~-~~~~~~~~~~----------------~~~~~ad~vI~a~p~~ 253 (434)
T PRK07233 198 ATLIDALAEAIEARGGEIRLGTPVTSVVID-GGGVTGVEVD----------------GEEEDFDAVISTAPPP 253 (434)
T ss_pred HHHHHHHHHHHHhcCceEEeCCCeeEEEEc-CCceEEEEeC----------------CceEECCEEEECCCHH
Confidence 467788899999999999999999999985 6677666543 3579999999998753
No 165
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=96.75 E-value=0.002 Score=53.87 Aligned_cols=63 Identities=24% Similarity=0.414 Sum_probs=49.4
Q ss_pred cEEEEhHHHHHHHHHHHHH------CCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEE
Q psy9487 12 NYVVRLGHVVKWLGEQAEA------MGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIF 85 (101)
Q Consensus 12 ~~~v~r~~~d~~l~~~A~~------~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~ 85 (101)
+.---|.+.|++++.++.+ .+..|+.+ .|.+++.+++.+|+||.+.+ |..++|+.||+
T Consensus 89 AVra~RaQaDk~~Y~~~mk~~le~~~NL~l~q~-~v~dli~e~~~~v~GV~t~~---------------G~~~~a~aVVl 152 (621)
T COG0445 89 AVRAPRAQADKWLYRRAMKNELENQPNLHLLQG-EVEDLIVEEGQRVVGVVTAD---------------GPEFHAKAVVL 152 (621)
T ss_pred hhcchhhhhhHHHHHHHHHHHHhcCCCceehHh-hhHHHhhcCCCeEEEEEeCC---------------CCeeecCEEEE
Confidence 4445688888888888765 46778776 77888885333699999987 78999999999
Q ss_pred eecCC
Q psy9487 86 AEGCH 90 (101)
Q Consensus 86 A~G~~ 90 (101)
++|..
T Consensus 153 TTGTF 157 (621)
T COG0445 153 TTGTF 157 (621)
T ss_pred eeccc
Confidence 99953
No 166
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=96.74 E-value=0.008 Score=48.44 Aligned_cols=60 Identities=23% Similarity=0.235 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHCCCEEecCCceeEEEEec--CC--cEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCC
Q psy9487 19 HVVKWLGEQAEAMGVEIYPGIPASEVLYHG--DG--SVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH 90 (101)
Q Consensus 19 ~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~--~g--~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~ 90 (101)
.+.+-|.+..++.|++|+.+++|++|..++ ++ ++++|++.+ .++ +.++.||.||+|..++
T Consensus 220 ~l~~pl~~~L~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~----g~~--------~~~~~aD~VVlA~p~~ 283 (474)
T TIGR02732 220 YLTKPILEYIEARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSK----PEG--------KKVIKADAYVAACDVP 283 (474)
T ss_pred hHHHHHHHHHHHCCCEEECCCEEEEEEEecCCCCceeEEEEEEec----CCc--------ceEEECCEEEECCChH
Confidence 356767888889999999999999999853 23 378888743 011 1468999999998865
No 167
>PRK02106 choline dehydrogenase; Validated
Probab=96.63 E-value=0.0045 Score=50.66 Aligned_cols=63 Identities=13% Similarity=0.130 Sum_probs=45.7
Q ss_pred hHHHHHHHHHHHH-HCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCc
Q psy9487 17 LGHVVKWLGEQAE-AMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG 91 (101)
Q Consensus 17 r~~~d~~l~~~A~-~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s 91 (101)
|......++..|+ ..+++|++++.|++|+++ +++++||+..+.+ +. -..+.|+.||+|+|+..
T Consensus 199 R~s~~~~~l~~a~~~~nl~i~~~a~V~rI~~~-~~~a~GV~~~~~~----~~-------~~~~~ak~VILaaGai~ 262 (560)
T PRK02106 199 RWSAARAYLDPALKRPNLTIVTHALTDRILFE-GKRAVGVEYERGG----GR-------ETARARREVILSAGAIN 262 (560)
T ss_pred EEChHHHhhccccCCCCcEEEcCCEEEEEEEe-CCeEEEEEEEeCC----cE-------EEEEeeeeEEEccCCCC
Confidence 3333433445554 556999999999999996 7899999987521 11 14578999999999754
No 168
>KOG0042|consensus
Probab=96.47 E-value=0.0026 Score=53.23 Aligned_cols=72 Identities=21% Similarity=0.264 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchhhHHH
Q psy9487 18 GHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLTKSL 97 (101)
Q Consensus 18 ~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l~~~l 97 (101)
+++.-.++-.|...|+.+.-.++|.+++.++++++.|+++.|+ -+|+. .+|+|+.||.|+|..+---|+|
T Consensus 224 aRmnl~vAlTA~r~GA~v~Nh~ev~~Llkd~~~kv~Ga~~rD~---iTG~e-------~~I~Ak~VVNATGpfsDsIr~M 293 (680)
T KOG0042|consen 224 ARMNLAVALTAARNGATVLNHVEVVSLLKDKDGKVIGARARDH---ITGKE-------YEIRAKVVVNATGPFSDSIRKM 293 (680)
T ss_pred HHHHHHHHHHHHhcchhhhhHHHHHHHhhCCCCceeeeEEEEe---ecCcE-------EEEEEEEEEeCCCCccHHHHhh
Confidence 4455567888999999999999999999987889999999873 35553 7899999999999987665665
Q ss_pred hh
Q psy9487 98 SS 99 (101)
Q Consensus 98 ~~ 99 (101)
.+
T Consensus 294 dd 295 (680)
T KOG0042|consen 294 DD 295 (680)
T ss_pred cc
Confidence 43
No 169
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=96.45 E-value=0.016 Score=48.36 Aligned_cols=70 Identities=19% Similarity=0.161 Sum_probs=48.6
Q ss_pred HHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEecccc---ccCCCCCCcCCCCC--eEEEccEEEEeecCCch
Q psy9487 23 WLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVG---IAKDGSPKDTFARG--MELHAKVTIFAEGCHGH 92 (101)
Q Consensus 23 ~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g---~~~~g~~~~~~~~g--~~i~A~~VI~A~G~~s~ 92 (101)
...+.+++.|++|++++.+.+++.++++++.+|++.... .+.+|...+..-+| .++.+|.||+|.|....
T Consensus 511 ~e~~~~~~~Gv~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~AiG~~p~ 585 (654)
T PRK12769 511 KEVKNAREEGANFEFNVQPVALELNEQGHVCGIRFLRTRLGEPDAQGRRRPVPIPGSEFVMPADAVIMAFGFNPH 585 (654)
T ss_pred HHHHHHHHcCCeEEeccCcEEEEECCCCeEEEEEEEEEEecCcCCCCCCcceeCCCceEEEECCEEEECccCCCC
Confidence 356789999999999999999987556899999874311 11233322222223 36999999999997653
No 170
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=96.41 E-value=0.012 Score=43.92 Aligned_cols=62 Identities=31% Similarity=0.382 Sum_probs=47.6
Q ss_pred CcEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecC
Q psy9487 11 GNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGC 89 (101)
Q Consensus 11 ~~~~v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~ 89 (101)
+++......+...+...+...|.+|+++++|++|..+ +++|. |.+.+ |..+.||.||+|...
T Consensus 202 ~~~~~~~g~~~~~~~~~~~~~g~~i~l~~~V~~I~~~-~~~v~-v~~~~---------------g~~~~ad~VI~a~p~ 263 (450)
T PF01593_consen 202 GGLTVGMGGLSLALALAAEELGGEIRLNTPVTRIERE-DGGVT-VTTED---------------GETIEADAVISAVPP 263 (450)
T ss_dssp STEEEETTTTHHHHHHHHHHHGGGEESSEEEEEEEEE-SSEEE-EEETT---------------SSEEEESEEEE-S-H
T ss_pred cceeecccchhHHHHHHHhhcCceeecCCcceecccc-ccccc-ccccc---------------ceEEecceeeecCch
Confidence 4566667777777788888889999999999999996 56665 66655 468999999999654
No 171
>PRK07208 hypothetical protein; Provisional
Probab=96.40 E-value=0.022 Score=45.25 Aligned_cols=62 Identities=21% Similarity=0.283 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCC
Q psy9487 18 GHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH 90 (101)
Q Consensus 18 ~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~ 90 (101)
..+...|.+.+++.|++|+++++|++|..++++.++.+...+ .+|+ ...+.|+.||.|.-.+
T Consensus 218 ~~l~~~L~~~l~~~g~~i~~~~~V~~I~~~~~~~v~~~~~~~----~~g~-------~~~~~ad~VI~a~p~~ 279 (479)
T PRK07208 218 GQLWETAAEKLEALGGKVVLNAKVVGLHHDGDGRIAVVVVND----TDGT-------EETVTADQVISSMPLR 279 (479)
T ss_pred chHHHHHHHHHHHcCCEEEeCCEEEEEEEcCCcEEEEEEEEc----CCCC-------EEEEEcCEEEECCCHH
Confidence 466778899999999999999999999986444455554322 1221 1368999999986543
No 172
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=96.39 E-value=0.02 Score=47.10 Aligned_cols=72 Identities=22% Similarity=0.280 Sum_probs=56.4
Q ss_pred CcEEEEhHHHHHHHHHHHHHC-CCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecC
Q psy9487 11 GNYVVRLGHVVKWLGEQAEAM-GVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGC 89 (101)
Q Consensus 11 ~~~~v~r~~~d~~l~~~A~~~-Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~ 89 (101)
.|.-|+=..+.+-|.+.+++. |++++++++|++|...+|++. -|.+.+ .++|+ ..+++|+.|.+.+|.
T Consensus 174 ~GTDVnFG~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~dg~W-~v~~~~---~~~~~-------~~~v~a~FVfvGAGG 242 (488)
T PF06039_consen 174 EGTDVNFGALTRQLVEYLQKQKGFELHLNHEVTDIKRNGDGRW-EVKVKD---LKTGE-------KREVRAKFVFVGAGG 242 (488)
T ss_pred CCccccHHHHHHHHHHHHHhCCCcEEEecCEeCeeEECCCCCE-EEEEEe---cCCCC-------eEEEECCEEEECCch
Confidence 366777888999999999998 999999999999998656643 366654 13343 278999999999998
Q ss_pred Cchh
Q psy9487 90 HGHL 93 (101)
Q Consensus 90 ~s~l 93 (101)
.+..
T Consensus 243 ~aL~ 246 (488)
T PF06039_consen 243 GALP 246 (488)
T ss_pred HhHH
Confidence 7754
No 173
>KOG1336|consensus
Probab=96.39 E-value=0.012 Score=48.17 Aligned_cols=59 Identities=24% Similarity=0.372 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCch
Q psy9487 19 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH 92 (101)
Q Consensus 19 ~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~ 92 (101)
.+-+.+.+..++.||+++.+|.+.++..+.+|+++-|.+.+ +.++.||+||+..|+...
T Consensus 256 ~i~~~~~~y~e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~d---------------g~~l~adlvv~GiG~~p~ 314 (478)
T KOG1336|consen 256 SIGQFYEDYYENKGVKFYLGTVVSSLEGNSDGEVSEVKLKD---------------GKTLEADLVVVGIGIKPN 314 (478)
T ss_pred HHHHHHHHHHHhcCeEEEEecceeecccCCCCcEEEEEecc---------------CCEeccCeEEEeeccccc
Confidence 45566777888999999999999999987789999999987 679999999999998754
No 174
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=96.37 E-value=0.024 Score=46.08 Aligned_cols=59 Identities=24% Similarity=0.232 Sum_probs=46.6
Q ss_pred EhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCc
Q psy9487 16 RLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG 91 (101)
Q Consensus 16 ~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s 91 (101)
.-..+-+.|.+++++.|+++++++.|.++..+ ++ ...|.+.+ +.++.++.||+|+|+..
T Consensus 264 ~~~~l~~~l~~~~~~~gv~i~~~~~V~~I~~~-~~-~~~V~~~~---------------g~~i~a~~vViAtG~~~ 322 (517)
T PRK15317 264 EGPKLAAALEEHVKEYDVDIMNLQRASKLEPA-AG-LIEVELAN---------------GAVLKAKTVILATGARW 322 (517)
T ss_pred CHHHHHHHHHHHHHHCCCEEEcCCEEEEEEec-CC-eEEEEECC---------------CCEEEcCEEEECCCCCc
Confidence 44567788899999999999999999999874 33 34455543 35799999999999865
No 175
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=96.34 E-value=0.024 Score=44.53 Aligned_cols=57 Identities=23% Similarity=0.305 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCch
Q psy9487 18 GHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH 92 (101)
Q Consensus 18 ~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~ 92 (101)
..+.+.+.+.+++.|+++++++++.++.- ++++..+.+.+ .++.++.||+|.|....
T Consensus 191 ~~~~~~l~~~l~~~gI~v~~~~~v~~i~~--~~~~~~v~~~~----------------~~i~~d~vi~a~G~~p~ 247 (444)
T PRK09564 191 KEITDVMEEELRENGVELHLNEFVKSLIG--EDKVEGVVTDK----------------GEYEADVVIVATGVKPN 247 (444)
T ss_pred HHHHHHHHHHHHHCCCEEEcCCEEEEEec--CCcEEEEEeCC----------------CEEEcCEEEECcCCCcC
Confidence 34566778888999999999999999853 45666666542 46999999999997654
No 176
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=96.34 E-value=0.011 Score=48.96 Aligned_cols=61 Identities=13% Similarity=0.193 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHCCCEEecCCceeEEEEecC--CcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCC
Q psy9487 20 VVKWLGEQAEAMGVEIYPGIPASEVLYHGD--GSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH 90 (101)
Q Consensus 20 ~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~--g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~ 90 (101)
|...+.+.++.-.++|++++.|++|+++++ ++|.+|...+. .+|+. .+++|++||+|+|+-
T Consensus 216 ~~~~~~~~~~~~n~~l~~~a~v~~i~~d~~~~~~v~~v~~~d~---~~g~~-------~~v~A~~vVLAagaI 278 (544)
T TIGR02462 216 FDLQPNDDAPSERFTLLTNHRCTRLVRNETNESEIEAALVRDL---LSGDR-------FEIKADVYVLACGAV 278 (544)
T ss_pred hhhhhhhhccCCCEEEEcCCEEEEEEeCCCCCceeEEEEEEEC---CCCcE-------EEEECCEEEEccCch
Confidence 444333333333499999999999999754 47999988762 12332 679999999999853
No 177
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=96.30 E-value=0.026 Score=41.25 Aligned_cols=58 Identities=31% Similarity=0.328 Sum_probs=44.1
Q ss_pred hHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCch
Q psy9487 17 LGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH 92 (101)
Q Consensus 17 r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~ 92 (101)
-..+-..+.+.+++.|+++++ +.|.++..+ ++. ..|.+.+ +.+++++.+|+|+|++..
T Consensus 56 ~~~~~~~l~~~~~~~gv~~~~-~~v~~v~~~-~~~-~~v~~~~---------------~~~~~~d~liiAtG~~~~ 113 (300)
T TIGR01292 56 GPELMEKMKEQAVKFGAEIIY-EEVIKVDLS-DRP-FKVKTGD---------------GKEYTAKAVIIATGASAR 113 (300)
T ss_pred hHHHHHHHHHHHHHcCCeEEE-EEEEEEEec-CCe-eEEEeCC---------------CCEEEeCEEEECCCCCcc
Confidence 346667888899999999999 889998764 332 3355543 357999999999998764
No 178
>PLN02487 zeta-carotene desaturase
Probab=96.28 E-value=0.02 Score=47.68 Aligned_cols=59 Identities=17% Similarity=0.155 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHCCCEEecCCceeEEEEec--CC--cEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCC
Q psy9487 20 VVKWLGEQAEAMGVEIYPGIPASEVLYHG--DG--SVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH 90 (101)
Q Consensus 20 ~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~--~g--~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~ 90 (101)
|-.-+.+..++.|++|+++++|++|..+. ++ +++||++.+ +++ +..+.||.||.|.+.+
T Consensus 297 l~~pl~~~L~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~-----~~~-------~~~~~aD~VV~A~p~~ 359 (569)
T PLN02487 297 LSGPIAKYITDRGGRFHLRWGCREILYDKSPDGETYVTGLKVSK-----ATE-------KEIVKADAYVAACDVP 359 (569)
T ss_pred HHHHHHHHHHHcCCEEEeCCceEEEEEecCCCCceeEEEEEEec-----CCC-------ceEEECCEEEECCCHH
Confidence 44556888899999999999999999963 22 488998842 111 3578999999999977
No 179
>KOG2852|consensus
Probab=96.27 E-value=0.013 Score=46.11 Aligned_cols=68 Identities=13% Similarity=0.160 Sum_probs=51.1
Q ss_pred cEEEEhHHHHHHHHHHHHHCC-CEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCC
Q psy9487 12 NYVVRLGHVVKWLGEQAEAMG-VEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH 90 (101)
Q Consensus 12 ~~~v~r~~~d~~l~~~A~~~G-v~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~ 90 (101)
.-.++-..|.++|+++|++.| |+++.| .|.++.- +.+|+.+|--.. .-+ +.....+..+|+|.|+|
T Consensus 141 taqvhP~lFc~~i~sea~k~~~V~lv~G-kv~ev~d-Ek~r~n~v~~ae----~~~-------ti~~~d~~~ivvsaGPW 207 (380)
T KOG2852|consen 141 TAQVHPYLFCHFILSEAEKRGGVKLVFG-KVKEVSD-EKHRINSVPKAE----AED-------TIIKADVHKIVVSAGPW 207 (380)
T ss_pred cceeCHHHHHHHHHHHHHhhcCeEEEEe-eeEEeec-ccccccccchhh----hcC-------ceEEeeeeEEEEecCCC
Confidence 557788899999999999977 999998 6777763 467777765431 001 13567888999999999
Q ss_pred ch
Q psy9487 91 GH 92 (101)
Q Consensus 91 s~ 92 (101)
++
T Consensus 208 Ts 209 (380)
T KOG2852|consen 208 TS 209 (380)
T ss_pred ch
Confidence 86
No 180
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=96.24 E-value=0.02 Score=43.85 Aligned_cols=54 Identities=15% Similarity=0.173 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecC
Q psy9487 20 VVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGC 89 (101)
Q Consensus 20 ~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~ 89 (101)
+.+.|.+.+++.|++|+++++|++|..+ ++++..+...+ |.++.||.||+|.-.
T Consensus 199 ~~~~l~~~l~~~g~~i~~~~~V~~i~~~-~~~~~~~~~~~---------------g~~~~~d~vi~a~p~ 252 (419)
T TIGR03467 199 FPEPARRWLDSRGGEVRLGTRVRSIEAN-AGGIRALVLSG---------------GETLPADAVVLAVPP 252 (419)
T ss_pred HHHHHHHHHHHcCCEEEcCCeeeEEEEc-CCcceEEEecC---------------CccccCCEEEEcCCH
Confidence 4455777888899999999999999986 45543222222 356899999998543
No 181
>PRK06116 glutathione reductase; Validated
Probab=96.24 E-value=0.038 Score=43.74 Aligned_cols=59 Identities=24% Similarity=0.304 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487 19 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL 93 (101)
Q Consensus 19 ~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l 93 (101)
.+.+.+.+..++.|+++++++.|.++..++++.+ .|.+.+ |.++.+|.||+|.|.....
T Consensus 209 ~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~g~~-~v~~~~---------------g~~i~~D~Vv~a~G~~p~~ 267 (450)
T PRK06116 209 DIRETLVEEMEKKGIRLHTNAVPKAVEKNADGSL-TLTLED---------------GETLTVDCLIWAIGREPNT 267 (450)
T ss_pred HHHHHHHHHHHHCCcEEECCCEEEEEEEcCCceE-EEEEcC---------------CcEEEeCEEEEeeCCCcCC
Confidence 3456677888999999999999999986433333 355543 4579999999999987654
No 182
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=96.16 E-value=0.034 Score=44.68 Aligned_cols=66 Identities=21% Similarity=0.241 Sum_probs=45.4
Q ss_pred HHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCc
Q psy9487 24 LGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG 91 (101)
Q Consensus 24 l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s 91 (101)
..+++++.||++++++.++++.-+ ++++++|+...... .+|.+.+.-....++.+|.||+|.|...
T Consensus 335 ~~~~~~~~GV~i~~~~~~~~i~~~-~g~v~~V~~~~~~~-~~g~~~~~~g~~~~i~~D~VI~A~G~~p 400 (471)
T PRK12810 335 EVSNAHEEGVEREFNVQTKEFEGE-NGKVTGVKVVRTEL-GEGDFEPVEGSEFVLPADLVLLAMGFTG 400 (471)
T ss_pred HHHHHHHcCCeEEeccCceEEEcc-CCEEEEEEEEEEEe-cCCCccccCCceEEEECCEEEECcCcCC
Confidence 467788999999999999999753 78999988653221 1221111000125799999999999654
No 183
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=96.14 E-value=0.038 Score=42.72 Aligned_cols=56 Identities=18% Similarity=0.188 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCch
Q psy9487 20 VVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH 92 (101)
Q Consensus 20 ~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~ 92 (101)
+...+.+..++.|+++++++++.++..+ ++. ..|.+.+ |.++.+|.||+|+|....
T Consensus 185 ~~~~l~~~l~~~gV~i~~~~~v~~i~~~-~~~-~~v~~~~---------------g~~i~~D~vI~a~G~~p~ 240 (377)
T PRK04965 185 VSSRLQHRLTEMGVHLLLKSQLQGLEKT-DSG-IRATLDS---------------GRSIEVDAVIAAAGLRPN 240 (377)
T ss_pred HHHHHHHHHHhCCCEEEECCeEEEEEcc-CCE-EEEEEcC---------------CcEEECCEEEECcCCCcc
Confidence 4456678888999999999999999764 333 3456544 468999999999998664
No 184
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=96.07 E-value=0.016 Score=47.88 Aligned_cols=79 Identities=20% Similarity=0.364 Sum_probs=60.3
Q ss_pred CCCCCCCCC--cEEEEh-----------------HHHHHHHHHHHHH-CCCEEecCCceeEEEEecCC-cEEEEEecccc
Q psy9487 3 FGMPMNNHG--NYVVRL-----------------GHVVKWLGEQAEA-MGVEIYPGIPASEVLYHGDG-SVKGIATGDVG 61 (101)
Q Consensus 3 ~~~~~~~~~--~~~v~r-----------------~~~d~~l~~~A~~-~Gv~i~~gt~v~~i~~~~~g-~v~GV~~~~~g 61 (101)
+|.+|+.+. +|.+.| +.+-+.|.+++++ -++++++++.+.+++.+ ++ .+.||.+.+.
T Consensus 99 ~Gv~FDr~~~g~~~lt~EggHS~rRIlH~~~~TG~~I~~~L~~~v~~~p~I~v~e~~~a~~li~~-~~~~~~Gv~~~~~- 176 (518)
T COG0029 99 LGVPFDRDEDGRLHLTREGGHSRRRILHAADATGKEIMTALLKKVRNRPNITVLEGAEALDLIIE-DGIGVAGVLVLNR- 176 (518)
T ss_pred cCCCCcCCCCCceeeeeecccCCceEEEecCCccHHHHHHHHHHHhcCCCcEEEecchhhhhhhc-CCceEeEEEEecC-
Confidence 677787654 255544 4567788888877 89999999999999996 66 5559998752
Q ss_pred ccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487 62 IAKDGSPKDTFARGMELHAKVTIFAEGCHGHL 93 (101)
Q Consensus 62 ~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l 93 (101)
+++ -..++|+.||+|+|.-+.|
T Consensus 177 ---~~~-------~~~~~a~~vVLATGG~g~l 198 (518)
T COG0029 177 ---NGE-------LGTFRAKAVVLATGGLGGL 198 (518)
T ss_pred ---CCe-------EEEEecCeEEEecCCCccc
Confidence 112 2689999999999988876
No 185
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=96.05 E-value=0.025 Score=44.21 Aligned_cols=58 Identities=16% Similarity=0.164 Sum_probs=43.4
Q ss_pred CcEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCC
Q psy9487 11 GNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH 90 (101)
Q Consensus 11 ~~~~v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~ 90 (101)
.-..++|..|.+.|.+++.. + ++.++.|.++ +.+ . |.+.+ |.++.|+.||+|+|..
T Consensus 82 ~Y~~I~r~~f~~~l~~~l~~-~--i~~~~~V~~v--~~~-~---v~l~d---------------g~~~~A~~VI~A~G~~ 137 (370)
T TIGR01789 82 AYRSMTSTRFHEGLLQAFPE-G--VILGRKAVGL--DAD-G---VDLAP---------------GTRINARSVIDCRGFK 137 (370)
T ss_pred CceEEEHHHHHHHHHHhhcc-c--EEecCEEEEE--eCC-E---EEECC---------------CCEEEeeEEEECCCCC
Confidence 45789999999998866543 3 7778899988 323 2 44443 4689999999999988
Q ss_pred ch
Q psy9487 91 GH 92 (101)
Q Consensus 91 s~ 92 (101)
+.
T Consensus 138 s~ 139 (370)
T TIGR01789 138 PS 139 (370)
T ss_pred CC
Confidence 64
No 186
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=95.97 E-value=0.054 Score=42.85 Aligned_cols=61 Identities=20% Similarity=0.224 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487 18 GHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL 93 (101)
Q Consensus 18 ~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l 93 (101)
..+.+.+.+..++.|+++++++.|.++..+ ++.+. +++.+ |+ ..++.+|.||+|.|.....
T Consensus 211 ~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~-~~~v~-v~~~~------g~-------~~~i~~D~vi~a~G~~p~~ 271 (461)
T TIGR01350 211 AEVSKVVAKALKKKGVKILTNTKVTAVEKN-DDQVV-YENKG------GE-------TETLTGEKVLVAVGRKPNT 271 (461)
T ss_pred HHHHHHHHHHHHHcCCEEEeCCEEEEEEEe-CCEEE-EEEeC------Cc-------EEEEEeCEEEEecCCcccC
Confidence 345667788889999999999999999874 45443 44432 11 1479999999999987765
No 187
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=95.89 E-value=0.053 Score=44.08 Aligned_cols=59 Identities=20% Similarity=0.234 Sum_probs=46.0
Q ss_pred EhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCc
Q psy9487 16 RLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG 91 (101)
Q Consensus 16 ~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s 91 (101)
....+...|.+++++.|++++.+++|.++..+ ++ ...|.+.+ +..+.++.+|+|+|+..
T Consensus 265 ~~~~l~~~l~~~l~~~gv~i~~~~~V~~I~~~-~~-~~~v~~~~---------------g~~i~~d~lIlAtGa~~ 323 (515)
T TIGR03140 265 TGSQLAANLEEHIKQYPIDLMENQRAKKIETE-DG-LIVVTLES---------------GEVLKAKSVIVATGARW 323 (515)
T ss_pred CHHHHHHHHHHHHHHhCCeEEcCCEEEEEEec-CC-eEEEEECC---------------CCEEEeCEEEECCCCCc
Confidence 45677788899999999999999999999764 33 23455543 35799999999999864
No 188
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=95.83 E-value=0.055 Score=42.23 Aligned_cols=56 Identities=21% Similarity=0.305 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCch
Q psy9487 19 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH 92 (101)
Q Consensus 19 ~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~ 92 (101)
.+..++.+.+++.||++++++.++++.- ++. +.|.+.+ |..+.+|.||+|.|....
T Consensus 187 ~~~~~l~~~l~~~GV~i~~~~~V~~i~~--~~~-~~v~l~~---------------g~~i~aD~Vv~a~G~~pn 242 (396)
T PRK09754 187 PVQRYLLQRHQQAGVRILLNNAIEHVVD--GEK-VELTLQS---------------GETLQADVVIYGIGISAN 242 (396)
T ss_pred HHHHHHHHHHHHCCCEEEeCCeeEEEEc--CCE-EEEEECC---------------CCEEECCEEEECCCCChh
Confidence 3456678888899999999999999854 233 3455544 467999999999998764
No 189
>KOG2404|consensus
Probab=95.80 E-value=0.035 Score=44.47 Aligned_cols=57 Identities=23% Similarity=0.388 Sum_probs=46.9
Q ss_pred CEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchhhHHHhhhC
Q psy9487 33 VEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLTKSLSSRF 101 (101)
Q Consensus 33 v~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l~~~l~~~~ 101 (101)
++|...+.|.+|+. ++|.|.||+..| .+|+. ..+.++.||+|+|..+.--+.|.++|
T Consensus 160 ~ki~~nskvv~il~-n~gkVsgVeymd----~sgek-------~~~~~~~VVlatGGf~ysd~~lLKey 216 (477)
T KOG2404|consen 160 VKILLNSKVVDILR-NNGKVSGVEYMD----ASGEK-------SKIIGDAVVLATGGFGYSDKELLKEY 216 (477)
T ss_pred Hhhhhcceeeeeec-CCCeEEEEEEEc----CCCCc-------cceecCceEEecCCcCcChHHHHHHh
Confidence 89999999999996 589999999886 55554 46888999999999986546666665
No 190
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=95.79 E-value=0.049 Score=46.68 Aligned_cols=56 Identities=20% Similarity=0.252 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCch
Q psy9487 20 VVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH 92 (101)
Q Consensus 20 ~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~ 92 (101)
+.+++.+..++.|+++++++.++++.- ++++.+|.+.+ |.++.+|.||.|.|....
T Consensus 184 ~~~~l~~~l~~~GV~v~~~~~v~~i~~--~~~~~~v~~~d---------------G~~i~~D~Vi~a~G~~Pn 239 (785)
T TIGR02374 184 AGRLLQRELEQKGLTFLLEKDTVEIVG--ATKADRIRFKD---------------GSSLEADLIVMAAGIRPN 239 (785)
T ss_pred HHHHHHHHHHHcCCEEEeCCceEEEEc--CCceEEEEECC---------------CCEEEcCEEEECCCCCcC
Confidence 445677788899999999999999864 46777888765 568999999999998754
No 191
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=95.79 E-value=0.058 Score=46.86 Aligned_cols=58 Identities=24% Similarity=0.334 Sum_probs=45.2
Q ss_pred HHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487 21 VKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL 93 (101)
Q Consensus 21 d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l 93 (101)
...|.+..++.||++++++.+++|.-+.++.+..|.+.+ |.++.+|.||+|.|.....
T Consensus 190 ~~~l~~~L~~~GV~v~~~~~v~~I~~~~~~~~~~v~~~d---------------G~~i~~D~Vv~A~G~rPn~ 247 (847)
T PRK14989 190 GEQLRRKIESMGVRVHTSKNTLEIVQEGVEARKTMRFAD---------------GSELEVDFIVFSTGIRPQD 247 (847)
T ss_pred HHHHHHHHHHCCCEEEcCCeEEEEEecCCCceEEEEECC---------------CCEEEcCEEEECCCcccCc
Confidence 355678888999999999999999753234566676654 5689999999999987654
No 192
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=95.78 E-value=0.054 Score=45.30 Aligned_cols=68 Identities=24% Similarity=0.259 Sum_probs=46.0
Q ss_pred HHHHHHHCCCEEecCCceeEEEEecCCcEEEEEecccc---ccCCCCCCcCCCCC--eEEEccEEEEeecCCc
Q psy9487 24 LGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVG---IAKDGSPKDTFARG--MELHAKVTIFAEGCHG 91 (101)
Q Consensus 24 l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g---~~~~g~~~~~~~~g--~~i~A~~VI~A~G~~s 91 (101)
...++++.|++|++.+.++++..+++++|.+|++.... -+.+|...+..-+| .++.+|.||+|.|...
T Consensus 495 e~~~a~~eGv~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~aD~Vi~AiG~~p 567 (639)
T PRK12809 495 EVVNAREEGVEFQFNVQPQYIACDEDGRLTAVGLIRTAMGEPGPDGRRRPRPVAGSEFELPADVLIMAFGFQA 567 (639)
T ss_pred HHHHHHHcCCeEEeccCCEEEEECCCCeEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECcCCCC
Confidence 34568899999999999999987556889988763211 01223222222222 4799999999999654
No 193
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=95.66 E-value=0.084 Score=41.82 Aligned_cols=58 Identities=21% Similarity=0.245 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487 19 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL 93 (101)
Q Consensus 19 ~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l 93 (101)
.+...|.+.+++.|+++++++.++++..+ ++.+ .+.+.+ |.++.+|.||+|.|.....
T Consensus 217 ~~~~~l~~~l~~~gI~v~~~~~v~~i~~~-~~~~-~v~~~~---------------g~~i~~D~vi~a~G~~p~~ 274 (461)
T PRK05249 217 EISDALSYHLRDSGVTIRHNEEVEKVEGG-DDGV-IVHLKS---------------GKKIKADCLLYANGRTGNT 274 (461)
T ss_pred HHHHHHHHHHHHcCCEEEECCEEEEEEEe-CCeE-EEEECC---------------CCEEEeCEEEEeecCCccc
Confidence 34456778888999999999999999764 3333 244432 3579999999999987654
No 194
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=95.62 E-value=0.085 Score=42.49 Aligned_cols=70 Identities=24% Similarity=0.252 Sum_probs=46.4
Q ss_pred HHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEecccc---ccCCCCCCcCCCC--CeEEEccEEEEeecCCch
Q psy9487 23 WLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVG---IAKDGSPKDTFAR--GMELHAKVTIFAEGCHGH 92 (101)
Q Consensus 23 ~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g---~~~~g~~~~~~~~--g~~i~A~~VI~A~G~~s~ 92 (101)
...+++++.||++++++.+.++..++++++++|++.... .+.+|...+..-+ ..++.+|.||+|.|....
T Consensus 325 ~e~~~~~~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~~D~Vi~a~G~~p~ 399 (467)
T TIGR01318 325 REVANAREEGVEFLFNVQPVYIECDEDGRVTGVGLVRTALGEPDADGRRRPVPVAGSEFVLPADVVIMAFGFQPH 399 (467)
T ss_pred HHHHHHHhcCCEEEecCCcEEEEECCCCeEEEEEEEEEEecccCCCCCccceecCCceEEEECCEEEECCcCCCC
Confidence 356778899999999999999976546788888764210 0112221111111 257999999999997653
No 195
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=95.62 E-value=0.021 Score=47.50 Aligned_cols=65 Identities=29% Similarity=0.445 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHH-CCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487 19 HVVKWLGEQAEA-MGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL 93 (101)
Q Consensus 19 ~~d~~l~~~A~~-~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l 93 (101)
.+..+|.+++.+ .+++++.+..+.+++.++++.|.||...+. .+|+. ..++|+.||+|+|..+.+
T Consensus 139 ~ll~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~Gvv~~~~---~~g~~-------~~~~akavilaTGG~g~~ 204 (562)
T COG1053 139 ELLHTLYEQLLKFSGIEIFDEYFVLDLLVDDGGGVAGVVARDL---RTGEL-------YVFRAKAVILATGGAGRL 204 (562)
T ss_pred HHHHHHHHHHHHhhcchhhhhhhhhhheecCCCcEEEEEEEEe---cCCcE-------EEEecCcEEEccCCceEE
Confidence 467889999988 778999999999999875555999987762 34443 578899999999998843
No 196
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=95.58 E-value=0.066 Score=42.81 Aligned_cols=70 Identities=19% Similarity=0.143 Sum_probs=46.1
Q ss_pred HHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEecccc---ccCCCCCCcCCCC--CeEEEccEEEEeecCCch
Q psy9487 23 WLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVG---IAKDGSPKDTFAR--GMELHAKVTIFAEGCHGH 92 (101)
Q Consensus 23 ~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g---~~~~g~~~~~~~~--g~~i~A~~VI~A~G~~s~ 92 (101)
...+++++.||+|++++.+.++.-++++++.+|++.... .+.+|...+..-+ ..++.+|.||+|.|....
T Consensus 314 ~~~~~l~~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~D~Vi~AiG~~p~ 388 (449)
T TIGR01316 314 EEIAHAEEEGVKFHFLCQPVEIIGDEEGNVRAVKFRKMDCQEQIDSGERRFLPCGDAECKLEADAVIVAIGNGSN 388 (449)
T ss_pred HHHHHHHhCCCEEEeccCcEEEEEcCCCeEEEEEEEEEEecCcCCCCCeeeeecCCceEEEECCEEEECCCCCCC
Confidence 345778899999999999999976546788888765210 0112211111101 247999999999997543
No 197
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=95.54 E-value=0.037 Score=43.09 Aligned_cols=72 Identities=19% Similarity=0.294 Sum_probs=48.3
Q ss_pred cEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCC--cEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecC
Q psy9487 12 NYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDG--SVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGC 89 (101)
Q Consensus 12 ~~~v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g--~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~ 89 (101)
.+...|..|.+++.--|+...-.+..+++|++|..+.++ ....|.+.+ .+|+ +..+.|+.||+|+|.
T Consensus 89 ~~~p~R~ef~dYl~Wva~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~----~~g~-------~~~~~ar~vVla~G~ 157 (341)
T PF13434_consen 89 YFFPSRREFNDYLRWVAEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRD----SDGD-------GETYRARNVVLATGG 157 (341)
T ss_dssp -SS-BHHHHHHHHHHHHCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEE----TTS--------EEEEEESEEEE----
T ss_pred CCCCCHHHHHHHHHHHHHhCCCceEECCEEEEEEEecCCCccEEEEEEee----cCCC-------eeEEEeCeEEECcCC
Confidence 355789999999888888888779999999999986433 356677753 2332 478999999999996
Q ss_pred Cchhh
Q psy9487 90 HGHLT 94 (101)
Q Consensus 90 ~s~l~ 94 (101)
...+-
T Consensus 158 ~P~iP 162 (341)
T PF13434_consen 158 QPRIP 162 (341)
T ss_dssp EE---
T ss_pred CCCCC
Confidence 65553
No 198
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=95.53 E-value=0.12 Score=41.24 Aligned_cols=62 Identities=19% Similarity=0.264 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487 19 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL 93 (101)
Q Consensus 19 ~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l 93 (101)
.+.+.+.+..++.|+++++++.++++..++++++..+.+.+ |+ ..++.+|.||+|.|.....
T Consensus 222 ~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~~~~~~~~~~~------g~-------~~~i~~D~vi~a~G~~p~~ 283 (472)
T PRK05976 222 ELSKEVARLLKKLGVRVVTGAKVLGLTLKKDGGVLIVAEHN------GE-------EKTLEADKVLVSVGRRPNT 283 (472)
T ss_pred HHHHHHHHHHHhcCCEEEeCcEEEEEEEecCCCEEEEEEeC------Cc-------eEEEEeCEEEEeeCCccCC
Confidence 34566677788899999999999999752134444444322 21 1479999999999987654
No 199
>PRK12831 putative oxidoreductase; Provisional
Probab=95.49 E-value=0.069 Score=43.00 Aligned_cols=68 Identities=21% Similarity=0.203 Sum_probs=45.6
Q ss_pred HHHHHHCCCEEecCCceeEEEEecCCcEEEEEecccc---ccCCCCCCcCCCCC--eEEEccEEEEeecCCch
Q psy9487 25 GEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVG---IAKDGSPKDTFARG--MELHAKVTIFAEGCHGH 92 (101)
Q Consensus 25 ~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g---~~~~g~~~~~~~~g--~~i~A~~VI~A~G~~s~ 92 (101)
.++|++.|++|++.+.+.++..++++++.+|++.... .+.+|...+..-+| .++.+|.||+|.|....
T Consensus 325 ~~~a~~eGV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~d~~Gr~~~~~~~g~~~~i~~D~Vi~AiG~~p~ 397 (464)
T PRK12831 325 VHHAKEEGVIFDLLTNPVEILGDENGWVKGMKCIKMELGEPDASGRRRPVEIEGSEFVLEVDTVIMSLGTSPN 397 (464)
T ss_pred HHHHHHcCCEEEecccceEEEecCCCeEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECCCCCCC
Confidence 3567889999999999999987556889888765211 01123211111112 36999999999997644
No 200
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=95.29 E-value=0.075 Score=32.41 Aligned_cols=39 Identities=31% Similarity=0.422 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEecc
Q psy9487 19 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGD 59 (101)
Q Consensus 19 ~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~ 59 (101)
.+-.++.++.++.|+++++++.++++..++++ +. |++.|
T Consensus 41 ~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~-~~-V~~~~ 79 (80)
T PF00070_consen 41 DAAKILEEYLRKRGVEVHTNTKVKEIEKDGDG-VE-VTLED 79 (80)
T ss_dssp HHHHHHHHHHHHTTEEEEESEEEEEEEEETTS-EE-EEEET
T ss_pred HHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCE-EE-EEEec
Confidence 34556788889999999999999999987555 66 88765
No 201
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=95.24 E-value=0.15 Score=41.44 Aligned_cols=59 Identities=22% Similarity=0.236 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487 19 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL 93 (101)
Q Consensus 19 ~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l 93 (101)
.+.+.+.+..++.|+++++++.++++..+ ++....|.+.+ +.++.++.||+|.|.....
T Consensus 232 ~~~~~l~~~L~~~GI~i~~~~~v~~i~~~-~~~~~~v~~~~---------------g~~i~~D~vl~a~G~~Pn~ 290 (486)
T TIGR01423 232 TLRKELTKQLRANGINIMTNENPAKVTLN-ADGSKHVTFES---------------GKTLDVDVVMMAIGRVPRT 290 (486)
T ss_pred HHHHHHHHHHHHcCCEEEcCCEEEEEEEc-CCceEEEEEcC---------------CCEEEcCEEEEeeCCCcCc
Confidence 34456677788899999999999999764 33334455533 3579999999999977654
No 202
>KOG1346|consensus
Probab=95.20 E-value=0.03 Score=46.18 Aligned_cols=57 Identities=21% Similarity=0.310 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCc
Q psy9487 18 GHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG 91 (101)
Q Consensus 18 ~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s 91 (101)
..+.+|-.++.++.||+++++..|.++..+ .+.++ ++++| |.+++.|+||+|.|...
T Consensus 393 eyls~wt~ekir~~GV~V~pna~v~sv~~~-~~nl~-lkL~d---------------G~~l~tD~vVvavG~eP 449 (659)
T KOG1346|consen 393 EYLSQWTIEKIRKGGVDVRPNAKVESVRKC-CKNLV-LKLSD---------------GSELRTDLVVVAVGEEP 449 (659)
T ss_pred HHHHHHHHHHHHhcCceeccchhhhhhhhh-ccceE-EEecC---------------CCeeeeeeEEEEecCCC
Confidence 467899999999999999999999999875 44544 67766 78999999999999643
No 203
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=95.16 E-value=0.15 Score=40.36 Aligned_cols=57 Identities=14% Similarity=0.226 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487 19 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL 93 (101)
Q Consensus 19 ~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l 93 (101)
.+.+.+.+.+++.|+++++++.+.++..+ ++.+ .+.+.+ .++.+|.||+|.|.+...
T Consensus 200 ~~~~~l~~~l~~~gV~v~~~~~v~~i~~~-~~~v-~v~~~~----------------g~i~~D~vl~a~G~~pn~ 256 (441)
T PRK08010 200 DIADNIATILRDQGVDIILNAHVERISHH-ENQV-QVHSEH----------------AQLAVDALLIASGRQPAT 256 (441)
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEEc-CCEE-EEEEcC----------------CeEEeCEEEEeecCCcCC
Confidence 45567788889999999999999999764 4433 244322 358899999999988754
No 204
>PRK14727 putative mercuric reductase; Provisional
Probab=95.15 E-value=0.14 Score=41.19 Aligned_cols=57 Identities=26% Similarity=0.268 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487 19 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL 93 (101)
Q Consensus 19 ~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l 93 (101)
.+..++.+..++.|+++++++.++.+..+ ++.+ -+.+.+ .++.++.||+|.|.+...
T Consensus 229 ~~~~~l~~~L~~~GV~i~~~~~V~~i~~~-~~~~-~v~~~~----------------g~i~aD~VlvA~G~~pn~ 285 (479)
T PRK14727 229 LLGETLTACFEKEGIEVLNNTQASLVEHD-DNGF-VLTTGH----------------GELRAEKLLISTGRHANT 285 (479)
T ss_pred HHHHHHHHHHHhCCCEEEcCcEEEEEEEe-CCEE-EEEEcC----------------CeEEeCEEEEccCCCCCc
Confidence 34566777888999999999999999764 3332 244322 368999999999998754
No 205
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=95.13 E-value=0.14 Score=37.36 Aligned_cols=61 Identities=20% Similarity=0.218 Sum_probs=44.3
Q ss_pred HHHHHHHHHHC-CCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487 21 VKWLGEQAEAM-GVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL 93 (101)
Q Consensus 21 d~~l~~~A~~~-Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l 93 (101)
...+.+.+++. |+++++++.+.++.- ++++.++.+.+. .+++ +.++.+|.||.|+|.....
T Consensus 179 ~~~~~~~l~~~~gv~~~~~~~v~~i~~--~~~~~~v~~~~~---~~g~-------~~~i~~D~vi~a~G~~~~~ 240 (300)
T TIGR01292 179 EKILLDRLRKNPNIEFLWNSTVKEIVG--DNKVEGVKIKNT---VTGE-------EEELKVDGVFIAIGHEPNT 240 (300)
T ss_pred CHHHHHHHHhCCCeEEEeccEEEEEEc--cCcEEEEEEEec---CCCc-------eEEEEccEEEEeeCCCCCh
Confidence 44567777887 999999999999975 347777766431 1222 3689999999999976543
No 206
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=95.11 E-value=0.19 Score=39.92 Aligned_cols=61 Identities=23% Similarity=0.286 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487 19 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL 93 (101)
Q Consensus 19 ~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l 93 (101)
.+...+.+..++.|+++++++.|.++.-+ ++.+ .+.+.+ +++ ..++.+|.||+|.|.....
T Consensus 214 ~~~~~l~~~l~~~gV~i~~~~~V~~i~~~-~~~v-~v~~~~-----gg~-------~~~i~~D~vi~a~G~~p~~ 274 (462)
T PRK06416 214 EISKLAERALKKRGIKIKTGAKAKKVEQT-DDGV-TVTLED-----GGK-------EETLEADYVLVAVGRRPNT 274 (462)
T ss_pred HHHHHHHHHHHHcCCEEEeCCEEEEEEEe-CCEE-EEEEEe-----CCe-------eEEEEeCEEEEeeCCccCC
Confidence 45667788888999999999999999764 3333 344433 011 1579999999999987654
No 207
>KOG0404|consensus
Probab=95.11 E-value=0.019 Score=43.89 Aligned_cols=55 Identities=22% Similarity=0.244 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCc
Q psy9487 18 GHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG 91 (101)
Q Consensus 18 ~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s 91 (101)
..+...|.+++++-|.+|++. .|.++.++ ....-+-+.. ..+.|+.||+|+|+..
T Consensus 70 ~~l~d~mrkqs~r~Gt~i~tE-tVskv~~s--skpF~l~td~----------------~~v~~~avI~atGAsA 124 (322)
T KOG0404|consen 70 PELMDKMRKQSERFGTEIITE-TVSKVDLS--SKPFKLWTDA----------------RPVTADAVILATGASA 124 (322)
T ss_pred HHHHHHHHHHHHhhcceeeee-ehhhcccc--CCCeEEEecC----------------CceeeeeEEEecccce
Confidence 455556899999999999997 57777664 4444455543 6799999999999864
No 208
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=95.10 E-value=0.11 Score=42.63 Aligned_cols=58 Identities=19% Similarity=0.294 Sum_probs=43.6
Q ss_pred EhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCch
Q psy9487 16 RLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH 92 (101)
Q Consensus 16 ~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~ 92 (101)
....+.+++.+++++.|++++ .+.|+.+..+ +....|.+.+ .++.++.+|+|+|++..
T Consensus 58 ~~~~l~~~l~~~~~~~gv~~~-~~~V~~i~~~--~~~~~V~~~~----------------g~~~a~~lVlATGa~p~ 115 (555)
T TIGR03143 58 TGPELMQEMRQQAQDFGVKFL-QAEVLDVDFD--GDIKTIKTAR----------------GDYKTLAVLIATGASPR 115 (555)
T ss_pred CHHHHHHHHHHHHHHcCCEEe-ccEEEEEEec--CCEEEEEecC----------------CEEEEeEEEECCCCccC
Confidence 345677888899999999986 5678888763 3444566543 35899999999999864
No 209
>PRK14694 putative mercuric reductase; Provisional
Probab=95.09 E-value=0.16 Score=40.66 Aligned_cols=58 Identities=22% Similarity=0.172 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487 18 GHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL 93 (101)
Q Consensus 18 ~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l 93 (101)
..+...+.+..++.|+++++++.+.++..+ ++. ..+.+.+ .++.++.||+|.|.....
T Consensus 218 ~~~~~~l~~~l~~~GI~v~~~~~v~~i~~~-~~~-~~v~~~~----------------~~i~~D~vi~a~G~~pn~ 275 (468)
T PRK14694 218 PAVGEAIEAAFRREGIEVLKQTQASEVDYN-GRE-FILETNA----------------GTLRAEQLLVATGRTPNT 275 (468)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEc-CCE-EEEEECC----------------CEEEeCEEEEccCCCCCc
Confidence 356677888889999999999999999764 333 3344432 469999999999988765
No 210
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=95.02 E-value=0.15 Score=41.29 Aligned_cols=63 Identities=14% Similarity=0.140 Sum_probs=46.7
Q ss_pred EEhHHHHHHHHHHHHHCCCE--EecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCC
Q psy9487 15 VRLGHVVKWLGEQAEAMGVE--IYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH 90 (101)
Q Consensus 15 v~r~~~d~~l~~~A~~~Gv~--i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~ 90 (101)
.....+.++|.+.|+..|++ |.++++|+++..+ +++ +-|.+.+. ++. ..+..+|.||+|+|..
T Consensus 108 p~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~-~~~-w~V~~~~~----~~~-------~~~~~~d~VIvAtG~~ 172 (461)
T PLN02172 108 PSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPV-DGK-WRVQSKNS----GGF-------SKDEIFDAVVVCNGHY 172 (461)
T ss_pred CCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeec-CCe-EEEEEEcC----CCc-------eEEEEcCEEEEeccCC
Confidence 45678889999999999998 9999999999874 443 44665431 111 1356789999999964
No 211
>PLN02785 Protein HOTHEAD
Probab=95.00 E-value=0.085 Score=44.00 Aligned_cols=63 Identities=11% Similarity=0.231 Sum_probs=43.7
Q ss_pred hHHHHHHHHHHHHHCCCEEecCCceeEEEEecC---CcEEEEEeccccccCCCCCCcCCCCCeEE-----EccEEEEeec
Q psy9487 17 LGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGD---GSVKGIATGDVGIAKDGSPKDTFARGMEL-----HAKVTIFAEG 88 (101)
Q Consensus 17 r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~---g~v~GV~~~~~g~~~~g~~~~~~~~g~~i-----~A~~VI~A~G 88 (101)
|..... |...+...+++|++++.|++|+++++ ++++||+..+ .+|.. ..+ .++-||+|+|
T Consensus 220 R~saa~-l~~~~~~~nl~Vl~~a~V~rIl~~~~~~~~ra~GV~~~~----~~g~~-------~~~~~~~~~~~eVILsAG 287 (587)
T PLN02785 220 RHTAAE-LLAAGNPNKLRVLLHATVQKIVFDTSGKRPRATGVIFKD----ENGNQ-------HQAFLSNNKGSEIILSAG 287 (587)
T ss_pred EcCHHH-HHhhcCCCCeEEEeCCEEEEEEEcCCCCCceEEEEEEEE----CCCce-------EEEEeecccCceEEeccc
Confidence 444444 34566678899999999999999642 3899999865 22321 222 2478999999
Q ss_pred CCc
Q psy9487 89 CHG 91 (101)
Q Consensus 89 ~~s 91 (101)
+-.
T Consensus 288 ai~ 290 (587)
T PLN02785 288 AIG 290 (587)
T ss_pred ccC
Confidence 754
No 212
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=94.92 E-value=0.2 Score=40.09 Aligned_cols=57 Identities=18% Similarity=0.178 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487 20 VVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL 93 (101)
Q Consensus 20 ~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l 93 (101)
+...+.+..++.|+++++++.+.++..+ ++.+. |...+ |.++.+|.||+|.|.....
T Consensus 220 ~~~~l~~~L~~~gV~i~~~~~v~~v~~~-~~~~~-v~~~~---------------g~~l~~D~vl~a~G~~pn~ 276 (466)
T PRK07845 220 AAEVLEEVFARRGMTVLKRSRAESVERT-GDGVV-VTLTD---------------GRTVEGSHALMAVGSVPNT 276 (466)
T ss_pred HHHHHHHHHHHCCcEEEcCCEEEEEEEe-CCEEE-EEECC---------------CcEEEecEEEEeecCCcCC
Confidence 4456677778899999999999999764 34432 44433 3579999999999987654
No 213
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=94.85 E-value=0.096 Score=42.21 Aligned_cols=56 Identities=32% Similarity=0.525 Sum_probs=41.5
Q ss_pred HHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCe-EEEccEEEEeecCCchh-hHHH
Q psy9487 21 VKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGM-ELHAKVTIFAEGCHGHL-TKSL 97 (101)
Q Consensus 21 d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~-~i~A~~VI~A~G~~s~l-~~~l 97 (101)
-+...+..+++||+|.++++|+++.-+ +|.+.+ |. +|.++.+|-|+|..++- .+.|
T Consensus 212 ~~~a~~~L~~~GV~v~l~~~Vt~v~~~------~v~~~~---------------g~~~I~~~tvvWaaGv~a~~~~~~l 269 (405)
T COG1252 212 SKYAERALEKLGVEVLLGTPVTEVTPD------GVTLKD---------------GEEEIPADTVVWAAGVRASPLLKDL 269 (405)
T ss_pred HHHHHHHHHHCCCEEEcCCceEEECCC------cEEEcc---------------CCeeEecCEEEEcCCCcCChhhhhc
Confidence 334455668899999999999999642 466654 23 59999999999987653 4543
No 214
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=94.83 E-value=0.16 Score=38.87 Aligned_cols=53 Identities=25% Similarity=0.403 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCch
Q psy9487 19 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH 92 (101)
Q Consensus 19 ~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~ 92 (101)
.+..++.+..++.|+++++++.++++. ++ +|.+.+ |.++.+|.||+|.|....
T Consensus 192 ~~~~~~~~~l~~~gV~v~~~~~v~~i~---~~---~v~~~~---------------g~~i~~D~vi~a~G~~p~ 244 (364)
T TIGR03169 192 KVRRLVLRLLARRGIEVHEGAPVTRGP---DG---ALILAD---------------GRTLPADAILWATGARAP 244 (364)
T ss_pred HHHHHHHHHHHHCCCEEEeCCeeEEEc---CC---eEEeCC---------------CCEEecCEEEEccCCChh
Confidence 356677888899999999999999873 23 355543 468999999999997653
No 215
>PLN02507 glutathione reductase
Probab=94.80 E-value=0.23 Score=40.42 Aligned_cols=57 Identities=21% Similarity=0.370 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487 20 VVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL 93 (101)
Q Consensus 20 ~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l 93 (101)
+-+++.+..++.|+++++++.|+++.-+ ++.+ .|.+.+ |.++.+|.||+|.|.....
T Consensus 246 ~~~~l~~~l~~~GI~i~~~~~V~~i~~~-~~~~-~v~~~~---------------g~~i~~D~vl~a~G~~pn~ 302 (499)
T PLN02507 246 MRAVVARNLEGRGINLHPRTNLTQLTKT-EGGI-KVITDH---------------GEEFVADVVLFATGRAPNT 302 (499)
T ss_pred HHHHHHHHHHhCCCEEEeCCEEEEEEEe-CCeE-EEEECC---------------CcEEEcCEEEEeecCCCCC
Confidence 4455666788899999999999999764 3333 344432 3579999999999987654
No 216
>PRK06370 mercuric reductase; Validated
Probab=94.78 E-value=0.22 Score=39.64 Aligned_cols=61 Identities=15% Similarity=0.140 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487 19 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL 93 (101)
Q Consensus 19 ~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l 93 (101)
.+.+.+.+..++.|+++++++.|.++..+ ++.+ .|.+... ++ +.++.+|.||+|.|.....
T Consensus 213 ~~~~~l~~~l~~~GV~i~~~~~V~~i~~~-~~~~-~v~~~~~----~~--------~~~i~~D~Vi~A~G~~pn~ 273 (463)
T PRK06370 213 DVAAAVREILEREGIDVRLNAECIRVERD-GDGI-AVGLDCN----GG--------APEITGSHILVAVGRVPNT 273 (463)
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEEc-CCEE-EEEEEeC----CC--------ceEEEeCEEEECcCCCcCC
Confidence 35567778888999999999999999764 3322 2333210 01 2579999999999977653
No 217
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=94.78 E-value=0.21 Score=39.69 Aligned_cols=57 Identities=23% Similarity=0.347 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487 20 VVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL 93 (101)
Q Consensus 20 ~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l 93 (101)
+...+.+..++.|+++++++.++++..+ ++. ..|.+.+ +.++.+|.||+|.|.....
T Consensus 209 ~~~~l~~~l~~~gV~i~~~~~v~~i~~~-~~~-~~v~~~~---------------g~~i~~D~viva~G~~pn~ 265 (446)
T TIGR01424 209 MRALLARNMEGRGIRIHPQTSLTSITKT-DDG-LKVTLSH---------------GEEIVADVVLFATGRSPNT 265 (446)
T ss_pred HHHHHHHHHHHCCCEEEeCCEEEEEEEc-CCe-EEEEEcC---------------CcEeecCEEEEeeCCCcCC
Confidence 3445677788899999999999999764 332 2244433 3579999999999987543
No 218
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=94.78 E-value=0.16 Score=39.77 Aligned_cols=55 Identities=13% Similarity=0.132 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCch
Q psy9487 19 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH 92 (101)
Q Consensus 19 ~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~ 92 (101)
.+...+.+..++.|+++++++.+.++.- ++.+ +.+.+ |.++.+|.||+|.|....
T Consensus 180 ~~~~~~~~~l~~~gV~v~~~~~v~~i~~--~~~~--v~~~~---------------g~~i~~D~vi~a~G~~p~ 234 (427)
T TIGR03385 180 EMNQIVEEELKKHEINLRLNEEVDSIEG--EERV--KVFTS---------------GGVYQADMVILATGIKPN 234 (427)
T ss_pred HHHHHHHHHHHHcCCEEEeCCEEEEEec--CCCE--EEEcC---------------CCEEEeCEEEECCCccCC
Confidence 4556677888899999999999999864 3443 34433 357999999999998754
No 219
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=94.71 E-value=0.3 Score=38.98 Aligned_cols=58 Identities=17% Similarity=0.060 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCC-eEEEccEEEEeecCCchh
Q psy9487 20 VVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARG-MELHAKVTIFAEGCHGHL 93 (101)
Q Consensus 20 ~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g-~~i~A~~VI~A~G~~s~l 93 (101)
+.+.+.++.++.|+++++++.++++.-+ ++....|...+ + ..+.+|.||+|.|.....
T Consensus 209 ~~~~~~~~l~~~gI~i~~~~~v~~i~~~-~~~~~~v~~~~---------------g~~~i~~D~vi~a~G~~pn~ 267 (450)
T TIGR01421 209 ISETITEEYEKEGINVHKLSKPVKVEKT-VEGKLVIHFED---------------GKSIDDVDELIWAIGRKPNT 267 (450)
T ss_pred HHHHHHHHHHHcCCEEEcCCEEEEEEEe-CCceEEEEECC---------------CcEEEEcCEEEEeeCCCcCc
Confidence 3456677788899999999999999764 22223355533 2 469999999999987654
No 220
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=94.68 E-value=0.26 Score=38.89 Aligned_cols=57 Identities=16% Similarity=0.188 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487 19 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL 93 (101)
Q Consensus 19 ~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l 93 (101)
.+.+.+.+..++.|+++++++.++++..+ ++.+. +.. + +.++.+|.||+|.|.....
T Consensus 199 ~~~~~~~~~l~~~GI~i~~~~~V~~i~~~-~~~v~-v~~-~---------------g~~i~~D~viva~G~~p~~ 255 (438)
T PRK07251 199 SVAALAKQYMEEDGITFLLNAHTTEVKND-GDQVL-VVT-E---------------DETYRFDALLYATGRKPNT 255 (438)
T ss_pred HHHHHHHHHHHHcCCEEEcCCEEEEEEec-CCEEE-EEE-C---------------CeEEEcCEEEEeeCCCCCc
Confidence 45556667788899999999999999763 33332 332 1 3579999999999987654
No 221
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=94.65 E-value=0.14 Score=45.60 Aligned_cols=68 Identities=15% Similarity=0.072 Sum_probs=50.0
Q ss_pred HHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccc---cCCC------------CCCcCCCCCeEEEccEEEEee
Q psy9487 23 WLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGI---AKDG------------SPKDTFARGMELHAKVTIFAE 87 (101)
Q Consensus 23 ~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~---~~~g------------~~~~~~~~g~~i~A~~VI~A~ 87 (101)
+=.++|.+.||+|.+.+.-.+++.|++|++.+++...+-. +..| .+.+...+..+|.|+.||+|.
T Consensus 645 eEv~~A~eEGV~f~~~~~P~~i~~d~~g~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vi~A~ 724 (1028)
T PRK06567 645 EELIYALALGVDFKENMQPLRINVDKYGHVESVEFENRNRHCEQSKTAWQSHEFGLTRLPRQCYAFPRNDIKTKTVIMAI 724 (1028)
T ss_pred HHHHHHHHcCcEEEecCCcEEEEecCCCeEEEEEEEEEecccccccccccccccccCCcCcccCCCccccccCCEEEEec
Confidence 4467899999999999999999887679999998875430 0011 223333445789999999999
Q ss_pred cCC
Q psy9487 88 GCH 90 (101)
Q Consensus 88 G~~ 90 (101)
|-.
T Consensus 725 G~~ 727 (1028)
T PRK06567 725 GIE 727 (1028)
T ss_pred ccC
Confidence 954
No 222
>PRK13748 putative mercuric reductase; Provisional
Probab=94.51 E-value=0.24 Score=40.28 Aligned_cols=57 Identities=26% Similarity=0.274 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487 19 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL 93 (101)
Q Consensus 19 ~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l 93 (101)
.+...+.+..++.|++|++++.++++..+ ++.+ .+.+.+ .++.+|.||+|.|.....
T Consensus 311 ~~~~~l~~~l~~~gI~i~~~~~v~~i~~~-~~~~-~v~~~~----------------~~i~~D~vi~a~G~~pn~ 367 (561)
T PRK13748 311 AIGEAVTAAFRAEGIEVLEHTQASQVAHV-DGEF-VLTTGH----------------GELRADKLLVATGRAPNT 367 (561)
T ss_pred HHHHHHHHHHHHCCCEEEcCCEEEEEEec-CCEE-EEEecC----------------CeEEeCEEEEccCCCcCC
Confidence 34456677788899999999999999764 4433 244432 369999999999987654
No 223
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=94.38 E-value=0.2 Score=39.65 Aligned_cols=52 Identities=19% Similarity=0.302 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCc
Q psy9487 19 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG 91 (101)
Q Consensus 19 ~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s 91 (101)
.+.+.+.+..++.||++++++.+.++.- + .|.+.+ |.++.+|.+|.+.|...
T Consensus 229 ~~~~~~~~~L~~~gV~v~~~~~v~~v~~---~---~v~~~~---------------g~~i~~d~vi~~~G~~~ 280 (424)
T PTZ00318 229 ALRKYGQRRLRRLGVDIRTKTAVKEVLD---K---EVVLKD---------------GEVIPTGLVVWSTGVGP 280 (424)
T ss_pred HHHHHHHHHHHHCCCEEEeCCeEEEEeC---C---EEEECC---------------CCEEEccEEEEccCCCC
Confidence 3566677888999999999999998852 2 355544 46899999999999654
No 224
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=94.35 E-value=0.38 Score=38.23 Aligned_cols=60 Identities=20% Similarity=0.209 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487 20 VVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL 93 (101)
Q Consensus 20 ~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l 93 (101)
+...+.+..++.|+++++++.|+++..+ ++ ...+.+.. ++. +.++.+|.||+|.|.....
T Consensus 209 ~~~~l~~~l~~~gV~i~~~~~V~~i~~~-~~-~~~v~~~~-----~~~-------~~~i~~D~ViiA~G~~p~~ 268 (463)
T TIGR02053 209 ISAAVEEALAEEGIEVVTSAQVKAVSVR-GG-GKIITVEK-----PGG-------QGEVEADELLVATGRRPNT 268 (463)
T ss_pred HHHHHHHHHHHcCCEEEcCcEEEEEEEc-CC-EEEEEEEe-----CCC-------ceEEEeCEEEEeECCCcCC
Confidence 4456677788899999999999999764 33 33344432 011 2579999999999976653
No 225
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=94.33 E-value=0.34 Score=38.65 Aligned_cols=62 Identities=24% Similarity=0.326 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487 19 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL 93 (101)
Q Consensus 19 ~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l 93 (101)
.+...+.++.++.|++|++++.|+++.-+ ++. ..+.+.. .+|+ ..++.+|.||+|.|.....
T Consensus 214 ~~~~~l~~~l~~~gV~i~~~~~v~~i~~~-~~~-~~v~~~~----~~g~-------~~~i~~D~vi~a~G~~pn~ 275 (466)
T PRK07818 214 EVSKEIAKQYKKLGVKILTGTKVESIDDN-GSK-VTVTVSK----KDGK-------AQELEADKVLQAIGFAPRV 275 (466)
T ss_pred HHHHHHHHHHHHCCCEEEECCEEEEEEEe-CCe-EEEEEEe----cCCC-------eEEEEeCEEEECcCcccCC
Confidence 35567788888999999999999999753 333 3344431 1222 1479999999999987654
No 226
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=94.31 E-value=0.24 Score=42.14 Aligned_cols=68 Identities=18% Similarity=0.245 Sum_probs=45.4
Q ss_pred HHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccc---cCCCCCCcCCCCC--eEEEccEEEEeecCCch
Q psy9487 25 GEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGI---AKDGSPKDTFARG--MELHAKVTIFAEGCHGH 92 (101)
Q Consensus 25 ~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~---~~~g~~~~~~~~g--~~i~A~~VI~A~G~~s~ 92 (101)
.+++++.|+++++++.+.++..++++++.+|++..... +.+|...+..-++ .++.+|.||+|.|....
T Consensus 615 ~~~~~~~GV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~A~G~~p~ 687 (752)
T PRK12778 615 VKHAKEEGIEFLTLHNPIEYLADEKGWVKQVVLQKMELGEPDASGRRRPVAIPGSTFTVDVDLVIVSVGVSPN 687 (752)
T ss_pred HHHHHHcCCEEEecCcceEEEECCCCEEEEEEEEEEEecCcCCCCCCCceecCCCeEEEECCEEEECcCCCCC
Confidence 35788999999999999999875567899888742110 1122211111112 46999999999997644
No 227
>PRK10262 thioredoxin reductase; Provisional
Probab=94.24 E-value=0.28 Score=36.95 Aligned_cols=64 Identities=17% Similarity=0.124 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487 20 VVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL 93 (101)
Q Consensus 20 ~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l 93 (101)
+...+.++.++.|+++++++.++++.-+ ++.+.+|++.+.. .+++ ..++.+|.||.+.|.....
T Consensus 187 ~~~~~~~~l~~~gV~i~~~~~v~~v~~~-~~~~~~v~~~~~~--~~~~-------~~~i~~D~vv~a~G~~p~~ 250 (321)
T PRK10262 187 LIKRLMDKVENGNIILHTNRTLEEVTGD-QMGVTGVRLRDTQ--NSDN-------IESLDVAGLFVAIGHSPNT 250 (321)
T ss_pred HHHHHHhhccCCCeEEEeCCEEEEEEcC-CccEEEEEEEEcC--CCCe-------EEEEECCEEEEEeCCccCh
Confidence 4455666777899999999999999653 4567788775410 0111 2579999999999976543
No 228
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=94.23 E-value=0.25 Score=39.36 Aligned_cols=69 Identities=23% Similarity=0.168 Sum_probs=43.8
Q ss_pred HHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEecccc---ccCCCCCC-cCCCCCeEEEccEEEEeecCCch
Q psy9487 23 WLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVG---IAKDGSPK-DTFARGMELHAKVTIFAEGCHGH 92 (101)
Q Consensus 23 ~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g---~~~~g~~~-~~~~~g~~i~A~~VI~A~G~~s~ 92 (101)
+..+.+++.||+|++++.+.++.-+ ++++.+|.+.... .+.+|... +.-..+.++.+|.||+|.|....
T Consensus 316 ~~~~~~~~~GV~i~~~~~v~~i~~~-~~~~~~v~~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~p~ 388 (457)
T PRK11749 316 EEVEHAKEEGVEFEWLAAPVEILGD-EGRVTGVEFVRMELGEPDASGRRRVPIEGSEFTLPADLVIKAIGQTPN 388 (457)
T ss_pred HHHHHHHHCCCEEEecCCcEEEEec-CCceEEEEEEEEEecCcCCCCCcccCCCCceEEEECCEEEECccCCCC
Confidence 3567889999999999999998764 4555667653210 00111100 00001357999999999997654
No 229
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=94.17 E-value=0.38 Score=38.56 Aligned_cols=62 Identities=16% Similarity=0.158 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCch
Q psy9487 19 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH 92 (101)
Q Consensus 19 ~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~ 92 (101)
.+...+.+..++.|+++++++.++++.-+ ++.+ .+.+.+. .+|+ +.++.+|.||+|.|....
T Consensus 216 ~~~~~l~~~l~~~gV~i~~~~~V~~i~~~-~~~v-~v~~~~~---~~g~-------~~~i~~D~vi~a~G~~pn 277 (466)
T PRK06115 216 ETAKTLQKALTKQGMKFKLGSKVTGATAG-ADGV-SLTLEPA---AGGA-------AETLQADYVLVAIGRRPY 277 (466)
T ss_pred HHHHHHHHHHHhcCCEEEECcEEEEEEEc-CCeE-EEEEEEc---CCCc-------eeEEEeCEEEEccCCccc
Confidence 35566778888999999999999999753 3332 2333210 1121 257999999999998754
No 230
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=94.16 E-value=0.32 Score=39.58 Aligned_cols=61 Identities=20% Similarity=0.237 Sum_probs=44.4
Q ss_pred HHHHHHHHHH-CCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCch
Q psy9487 21 VKWLGEQAEA-MGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH 92 (101)
Q Consensus 21 d~~l~~~A~~-~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~ 92 (101)
++.+.+..++ .|++|++++.++++.-+ ++++.+|.+.+. .+++ ...+.+|.||+|.|....
T Consensus 390 ~~~l~~~l~~~~gV~i~~~~~v~~i~~~-~~~v~~v~~~~~---~~~~-------~~~i~~D~vi~a~G~~Pn 451 (515)
T TIGR03140 390 DKVLQDKLKSLPNVDILTSAQTTEIVGD-GDKVTGIRYQDR---NSGE-------EKQLDLDGVFVQIGLVPN 451 (515)
T ss_pred hHHHHHHHhcCCCCEEEECCeeEEEEcC-CCEEEEEEEEEC---CCCc-------EEEEEcCEEEEEeCCcCC
Confidence 4455666766 59999999999999753 578888887541 1222 257999999999997653
No 231
>KOG2853|consensus
Probab=93.96 E-value=0.2 Score=40.49 Aligned_cols=66 Identities=15% Similarity=0.238 Sum_probs=46.1
Q ss_pred EhHHHHHHHHHHHHHCCCEEecCCceeEEEEe---------cCC-------cEEEEEeccccccCCCCCCcCCCCCeEEE
Q psy9487 16 RLGHVVKWLGEQAEAMGVEIYPGIPASEVLYH---------GDG-------SVKGIATGDVGIAKDGSPKDTFARGMELH 79 (101)
Q Consensus 16 ~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~---------~~g-------~v~GV~~~~~g~~~~g~~~~~~~~g~~i~ 79 (101)
+-..+.+.+.++|..+||.+..| +|++..++ +++ ++.+|.+.- -++. ...++
T Consensus 241 dpw~LLs~~rrk~~~lGv~f~~G-eV~~Fef~sqr~v~~~tDd~t~~~~~~~i~~vvV~m----~d~~-------~r~vk 308 (509)
T KOG2853|consen 241 DPWALLSGIRRKAITLGVQFVKG-EVVGFEFESQRAVHAFTDDGTAKLRAQRISGVVVRM----NDAL-------ARPVK 308 (509)
T ss_pred CHHHHHHHHHHHhhhhcceEecc-eEEEEEEecccceeeecccchhhhhhcccceeEEec----Cchh-------cCcee
Confidence 55677888899999999999987 78888775 223 333333221 0111 25799
Q ss_pred ccEEEEeecCCchh
Q psy9487 80 AKVTIFAEGCHGHL 93 (101)
Q Consensus 80 A~~VI~A~G~~s~l 93 (101)
+.++|.|+|+||.-
T Consensus 309 ~al~V~aAGa~s~Q 322 (509)
T KOG2853|consen 309 FALCVNAAGAWSGQ 322 (509)
T ss_pred EEEEEeccCccHHH
Confidence 99999999999853
No 232
>PRK09897 hypothetical protein; Provisional
Probab=93.90 E-value=0.32 Score=40.30 Aligned_cols=51 Identities=20% Similarity=0.235 Sum_probs=36.6
Q ss_pred HHHHHHHCC--CEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCC
Q psy9487 24 LGEQAEAMG--VEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH 90 (101)
Q Consensus 24 l~~~A~~~G--v~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~ 90 (101)
+.+.+.+.| ++++..++|+++..+ ++.+ .|.+.+ + +..+.||.||+|+|-.
T Consensus 113 l~~~a~~~G~~V~v~~~~~V~~I~~~-~~g~-~V~t~~------g--------g~~i~aD~VVLAtGh~ 165 (534)
T PRK09897 113 LVDQARQQKFAVAVYESCQVTDLQIT-NAGV-MLATNQ------D--------LPSETFDLAVIATGHV 165 (534)
T ss_pred HHHHHHHcCCeEEEEECCEEEEEEEe-CCEE-EEEECC------C--------CeEEEcCEEEECCCCC
Confidence 355666777 788899999999875 4443 355533 0 2579999999999963
No 233
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=93.80 E-value=0.32 Score=37.55 Aligned_cols=60 Identities=28% Similarity=0.294 Sum_probs=45.1
Q ss_pred EhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchhh
Q psy9487 16 RLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLT 94 (101)
Q Consensus 16 ~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l~ 94 (101)
.-..+-+-+.++|+..|+++.. ..|..+..+ +. ..-|++.+ +. ++|+.||+|+|+.....
T Consensus 59 ~g~~L~~~~~~~a~~~~~~~~~-~~v~~v~~~-~~-~F~v~t~~---------------~~-~~ak~vIiAtG~~~~~~ 118 (305)
T COG0492 59 LGPELMEQMKEQAEKFGVEIVE-DEVEKVELE-GG-PFKVKTDK---------------GT-YEAKAVIIATGAGARKL 118 (305)
T ss_pred chHHHHHHHHHHHhhcCeEEEE-EEEEEEeec-Cc-eEEEEECC---------------Ce-EEEeEEEECcCCcccCC
Confidence 4456666679999999999998 677777653 22 56678765 34 99999999999877653
No 234
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=93.61 E-value=0.39 Score=39.47 Aligned_cols=67 Identities=24% Similarity=0.207 Sum_probs=42.0
Q ss_pred HHHHHHHCCCEEecCCceeEEEEecCCcEEEEEecccc---ccCCCCCCcCCCCCeEEEccEEEEeecCCc
Q psy9487 24 LGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVG---IAKDGSPKDTFARGMELHAKVTIFAEGCHG 91 (101)
Q Consensus 24 l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g---~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s 91 (101)
.++++++.|++|++++.+.++.-+ ++.+++++....- -+.+|...+.-....++.+|.||.|.|...
T Consensus 311 ~~~~a~~~GVki~~~~~~~~i~~~-~~~~~~v~~~~~~~~~~~~~g~~~~~~g~~~~i~~D~Vi~A~G~~p 380 (564)
T PRK12771 311 EIEEALREGVEINWLRTPVEIEGD-ENGATGLRVITVEKMELDEDGRPSPVTGEEETLEADLVVLAIGQDI 380 (564)
T ss_pred HHHHHHHcCCEEEecCCcEEEEcC-CCCEEEEEEEEEEecccCCCCCeeecCCceEEEECCEEEECcCCCC
Confidence 466788899999999999999764 3444476543210 012232111100025799999999999765
No 235
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=93.59 E-value=0.63 Score=37.34 Aligned_cols=62 Identities=23% Similarity=0.252 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487 19 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL 93 (101)
Q Consensus 19 ~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l 93 (101)
.+.+.+.++.++.|+++++++.|+++.-+ ++.+ .+...+ .+|+. .++.+|.||+|.|.....
T Consensus 225 ~~~~~~~~~l~~~gi~i~~~~~v~~i~~~-~~~v-~v~~~~----~~g~~-------~~i~~D~vl~a~G~~p~~ 286 (475)
T PRK06327 225 QVAKEAAKAFTKQGLDIHLGVKIGEIKTG-GKGV-SVAYTD----ADGEA-------QTLEVDKLIVSIGRVPNT 286 (475)
T ss_pred HHHHHHHHHHHHcCcEEEeCcEEEEEEEc-CCEE-EEEEEe----CCCce-------eEEEcCEEEEccCCccCC
Confidence 45566777888899999999999999764 3333 355433 12221 579999999999987654
No 236
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=93.52 E-value=0.57 Score=38.11 Aligned_cols=54 Identities=24% Similarity=0.318 Sum_probs=44.5
Q ss_pred hHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEe
Q psy9487 17 LGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFA 86 (101)
Q Consensus 17 r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A 86 (101)
.+.+-|.+.+-+.=.|..+..++++.+|.+++++++.||+.. |..++|+.||..
T Consensus 231 ~GELpQ~FcRl~AV~GG~Y~L~~~i~~i~~~~~g~~~gV~s~----------------ge~v~~k~vI~d 284 (438)
T PF00996_consen 231 LGELPQAFCRLSAVYGGTYMLNRPIDEIVVDEDGKVIGVKSE----------------GEVVKAKKVIGD 284 (438)
T ss_dssp TTHHHHHHHHHHHHTT-EEESS--EEEEEEETTTEEEEEEET----------------TEEEEESEEEEE
T ss_pred CccHHHHHHHHhhhcCcEEEeCCccceeeeecCCeEEEEecC----------------CEEEEcCEEEEC
Confidence 368899999888889999999999999999778999999863 489999999954
No 237
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=93.49 E-value=0.41 Score=42.42 Aligned_cols=67 Identities=21% Similarity=0.372 Sum_probs=45.9
Q ss_pred HHHHHHCCCEEecCCceeEEEEecCCcEEEEEecccc---ccCCCCCCcCCCCC--eEEEccEEEEeecCCch
Q psy9487 25 GEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVG---IAKDGSPKDTFARG--MELHAKVTIFAEGCHGH 92 (101)
Q Consensus 25 ~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g---~~~~g~~~~~~~~g--~~i~A~~VI~A~G~~s~ 92 (101)
.+.+++.|++|++++...++..+++|+|.+|++.... .+.+|...+.- ++ .++.+|.||+|-|....
T Consensus 616 ~~~a~eeGI~~~~~~~p~~i~~~~~G~v~~v~~~~~~l~~~d~~Gr~~~~~-~g~~~~i~~D~Vi~AiG~~p~ 687 (1006)
T PRK12775 616 IRHAKEEGIDFFFLHSPVEIYVDAEGSVRGMKVEEMELGEPDEKGRRKPMP-TGEFKDLECDTVIYALGTKAN 687 (1006)
T ss_pred HHHHHhCCCEEEecCCcEEEEeCCCCeEEEEEEEEEEecccCCCCCccccC-CCceEEEEcCEEEECCCcCCC
Confidence 4578899999999999999987557899998765311 01122211111 12 36999999999997644
No 238
>PRK13984 putative oxidoreductase; Provisional
Probab=93.35 E-value=0.35 Score=39.95 Aligned_cols=67 Identities=25% Similarity=0.339 Sum_probs=44.6
Q ss_pred HHHHHHCCCEEecCCceeEEEEecCCcEEEEEecccc--ccCCCCCCcCCCC--CeEEEccEEEEeecCCch
Q psy9487 25 GEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVG--IAKDGSPKDTFAR--GMELHAKVTIFAEGCHGH 92 (101)
Q Consensus 25 ~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g--~~~~g~~~~~~~~--g~~i~A~~VI~A~G~~s~ 92 (101)
.+++.+.||+|++++.+.++..+ ++++.+|++.+.- .+.+|...+.+.+ ..++.+|.||+|.|....
T Consensus 469 ~~~~~~~GV~i~~~~~~~~i~~~-~g~v~~v~~~~~~~~~~~~G~~~~~~~~g~~~~i~aD~Vi~aiG~~p~ 539 (604)
T PRK13984 469 IEEGLEEGVVIYPGWGPMEVVIE-NDKVKGVKFKKCVEVFDEEGRFNPKFDESDQIIVEADMVVEAIGQAPD 539 (604)
T ss_pred HHHHHHcCCEEEeCCCCEEEEcc-CCEEEEEEEEEEeeccCCCCCccceecCCceEEEECCEEEEeeCCCCC
Confidence 45567889999999999998764 7899998765310 0112321111111 257999999999998753
No 239
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=93.34 E-value=0.2 Score=40.15 Aligned_cols=56 Identities=25% Similarity=0.311 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecC
Q psy9487 20 VVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGC 89 (101)
Q Consensus 20 ~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~ 89 (101)
+.+.|..+-+.+|.-+.+|-+|.+..+. +++|..|-+.... -..++|+..|+|+|+
T Consensus 260 l~~~L~~~f~~~Gg~~m~Gd~V~~a~~~-~~~v~~i~trn~~-------------diP~~a~~~VLAsGs 315 (421)
T COG3075 260 LHNQLQRQFEQLGGLWMPGDEVKKATCK-GGRVTEIYTRNHA-------------DIPLRADFYVLASGS 315 (421)
T ss_pred HHHHHHHHHHHcCceEecCCceeeeeee-CCeEEEEEecccc-------------cCCCChhHeeeeccc
Confidence 4556788889999999999999999995 8999999886422 267999999999994
No 240
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=93.31 E-value=0.64 Score=37.07 Aligned_cols=59 Identities=20% Similarity=0.267 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487 19 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL 93 (101)
Q Consensus 19 ~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l 93 (101)
.+-+.+.+..++.|+++++++.++++..+ +.. +-+.. + ++ ..++.+|.||+|+|....+
T Consensus 212 e~~~~l~~~L~~~GI~i~~~~~V~~i~~~-~~~-v~~~~-~------g~-------~~~i~~D~vivA~G~~p~~ 270 (458)
T PRK06912 212 DIAHILREKLENDGVKIFTGAALKGLNSY-KKQ-ALFEY-E------GS-------IQEVNAEFVLVSVGRKPRV 270 (458)
T ss_pred HHHHHHHHHHHHCCCEEEECCEEEEEEEc-CCE-EEEEE-C------Cc-------eEEEEeCEEEEecCCccCC
Confidence 35556777888899999999999998653 332 22222 1 11 1479999999999987654
No 241
>PTZ00052 thioredoxin reductase; Provisional
Probab=93.29 E-value=0.64 Score=37.75 Aligned_cols=57 Identities=14% Similarity=0.165 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487 20 VVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL 93 (101)
Q Consensus 20 ~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l 93 (101)
+.+.+.+..++.|+++++++.++++.-. ++. ..|...+ |.++.+|.||+|.|.....
T Consensus 224 ~~~~l~~~l~~~GV~i~~~~~v~~v~~~-~~~-~~v~~~~---------------g~~i~~D~vl~a~G~~pn~ 280 (499)
T PTZ00052 224 CSEKVVEYMKEQGTLFLEGVVPINIEKM-DDK-IKVLFSD---------------GTTELFDTVLYATGRKPDI 280 (499)
T ss_pred HHHHHHHHHHHcCCEEEcCCeEEEEEEc-CCe-EEEEECC---------------CCEEEcCEEEEeeCCCCCc
Confidence 3456677888999999999999988753 333 3355433 3568999999999987654
No 242
>KOG2614|consensus
Probab=93.25 E-value=0.14 Score=41.49 Aligned_cols=26 Identities=19% Similarity=0.303 Sum_probs=24.0
Q ss_pred CeEEEccEEEEeecCCchhhHHHhhh
Q psy9487 75 GMELHAKVTIFAEGCHGHLTKSLSSR 100 (101)
Q Consensus 75 g~~i~A~~VI~A~G~~s~l~~~l~~~ 100 (101)
|.++++|++|.|||++|.++++|.-+
T Consensus 147 g~~~~~dlligCDGa~S~Vr~~l~~~ 172 (420)
T KOG2614|consen 147 GTTVKGDLLIGCDGAYSKVRKWLGFK 172 (420)
T ss_pred CcEEEeeEEEEcCchHHHHHHHhccc
Confidence 67999999999999999999999754
No 243
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=93.04 E-value=0.4 Score=37.96 Aligned_cols=52 Identities=15% Similarity=0.207 Sum_probs=37.6
Q ss_pred hHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEee
Q psy9487 17 LGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAE 87 (101)
Q Consensus 17 r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~ 87 (101)
...+.+.|++.+.+ ++|.++++|++|..+ ++++ .|.+.+ |..+.||.||+|.
T Consensus 225 ~~~l~~~l~~~l~~--~~i~~~~~V~~I~~~-~~~~-~v~~~~---------------g~~~~ad~VI~a~ 276 (463)
T PRK12416 225 LSTIIDRLEEVLTE--TVVKKGAVTTAVSKQ-GDRY-EISFAN---------------HESIQADYVVLAA 276 (463)
T ss_pred HHHHHHHHHHhccc--ccEEcCCEEEEEEEc-CCEE-EEEECC---------------CCEEEeCEEEECC
Confidence 44566666665544 689999999999985 4443 466543 3578999999996
No 244
>PTZ00058 glutathione reductase; Provisional
Probab=93.03 E-value=0.73 Score=38.34 Aligned_cols=59 Identities=15% Similarity=0.179 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487 20 VVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL 93 (101)
Q Consensus 20 ~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l 93 (101)
+.+.+.+..++.|+++++++.+.++.-++++.+. +...+ + +..+.+|.||+|.|.....
T Consensus 280 i~~~l~~~L~~~GV~i~~~~~V~~I~~~~~~~v~-v~~~~------~--------~~~i~aD~VlvA~Gr~Pn~ 338 (561)
T PTZ00058 280 IINELENDMKKNNINIITHANVEEIEKVKEKNLT-IYLSD------G--------RKYEHFDYVIYCVGRSPNT 338 (561)
T ss_pred HHHHHHHHHHHCCCEEEeCCEEEEEEecCCCcEE-EEECC------C--------CEEEECCEEEECcCCCCCc
Confidence 4455667778899999999999999753222332 22222 1 2579999999999976543
No 245
>PLN02676 polyamine oxidase
Probab=92.96 E-value=0.41 Score=38.89 Aligned_cols=54 Identities=24% Similarity=0.266 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHC------CCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeec
Q psy9487 18 GHVVKWLGEQAEAM------GVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEG 88 (101)
Q Consensus 18 ~~~d~~l~~~A~~~------Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G 88 (101)
..+.+.|++...+. +..|.++++|++|.++ ++.| -|.+.+ |.+++|+.||+|..
T Consensus 224 ~~l~~~La~~~~~~~~~~~~~~~I~l~~~V~~I~~~-~~gV-~V~~~~---------------G~~~~a~~VIvtvP 283 (487)
T PLN02676 224 ESLVYYLAEQFLSTKSGKITDPRLKLNKVVREISYS-KNGV-TVKTED---------------GSVYRAKYVIVSVS 283 (487)
T ss_pred HHHHHHHHhhcccccccccCCCceecCCEeeEEEEc-CCcE-EEEECC---------------CCEEEeCEEEEccC
Confidence 34455555544322 3689999999999986 4444 366654 46899999999975
No 246
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=92.96 E-value=0.14 Score=35.26 Aligned_cols=55 Identities=22% Similarity=0.238 Sum_probs=37.8
Q ss_pred HHHHHHCCCEEecCCceeEEEEecCCcE----EEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCch
Q psy9487 25 GEQAEAMGVEIYPGIPASEVLYHGDGSV----KGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH 92 (101)
Q Consensus 25 ~~~A~~~Gv~i~~gt~v~~i~~~~~g~v----~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~ 92 (101)
.++....+++++.++.+.++... .+++ ..+.... .++ +.++.++.+|+|+|..+.
T Consensus 65 ~~~~~~~~v~~~~~~~v~~i~~~-~~~~~~~~~~~~~~~-----~~~-------~~~~~~d~lviAtG~~~~ 123 (201)
T PF07992_consen 65 VDQLKNRGVEIRLNAKVVSIDPE-SKRVVCPAVTIQVVE-----TGD-------GREIKYDYLVIATGSRPR 123 (201)
T ss_dssp HHHHHHHTHEEEHHHTEEEEEES-TTEEEETCEEEEEEE-----TTT-------EEEEEEEEEEEESTEEEE
T ss_pred ccccccceEEEeecccccccccc-ccccccCcccceeec-----cCC-------ceEecCCeeeecCccccc
Confidence 55667789999888999999874 4543 1121111 111 478999999999997754
No 247
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=92.94 E-value=0.66 Score=31.77 Aligned_cols=61 Identities=15% Similarity=0.262 Sum_probs=39.3
Q ss_pred cEEEEhHHHHHHHHHHHHH------CCCEEe-cCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEE
Q psy9487 12 NYVVRLGHVVKWLGEQAEA------MGVEIY-PGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTI 84 (101)
Q Consensus 12 ~~~v~r~~~d~~l~~~A~~------~Gv~i~-~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI 84 (101)
.-.+.|..|.++|.+..++ .|++|. ...+|++|... ++. ..|.+.+ |..+.++.||
T Consensus 88 ~~f~pR~~~G~YL~~~~~~~~~~~~~~i~v~~~~~~V~~i~~~-~~~-~~v~~~~---------------g~~~~~d~Vv 150 (156)
T PF13454_consen 88 DDFPPRALFGEYLRDRFDRLLARLPAGITVRHVRAEVVDIRRD-DDG-YRVVTAD---------------GQSIRADAVV 150 (156)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHhhcCCcEEEEEeeEEEEEEEc-CCc-EEEEECC---------------CCEEEeCEEE
Confidence 4456777777776655544 354443 23488888775 333 3455544 5679999999
Q ss_pred EeecC
Q psy9487 85 FAEGC 89 (101)
Q Consensus 85 ~A~G~ 89 (101)
+|+|-
T Consensus 151 La~Gh 155 (156)
T PF13454_consen 151 LATGH 155 (156)
T ss_pred ECCCC
Confidence 99984
No 248
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=92.90 E-value=0.7 Score=36.01 Aligned_cols=47 Identities=21% Similarity=0.409 Sum_probs=29.7
Q ss_pred CCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecC
Q psy9487 32 GVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGC 89 (101)
Q Consensus 32 Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~ 89 (101)
-+.|+++++|+++..++++++. +.+.+. .+++ ..++.+|.||+|||.
T Consensus 293 ~~~l~~~~~v~~~~~~~~~~~~-l~~~~~---~~~~-------~~~~~~D~VilATGy 339 (341)
T PF13434_consen 293 RLRLLPNTEVTSAEQDGDGGVR-LTLRHR---QTGE-------EETLEVDAVILATGY 339 (341)
T ss_dssp -SEEETTEEEEEEEEES-SSEE-EEEEET---TT---------EEEEEESEEEE---E
T ss_pred CeEEeCCCEEEEEEECCCCEEE-EEEEEC---CCCC-------eEEEecCEEEEcCCc
Confidence 4999999999999987544443 555431 1222 378999999999995
No 249
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=92.84 E-value=0.6 Score=37.97 Aligned_cols=61 Identities=18% Similarity=0.180 Sum_probs=44.5
Q ss_pred HHHHHHHHHH-CCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCch
Q psy9487 21 VKWLGEQAEA-MGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH 92 (101)
Q Consensus 21 d~~l~~~A~~-~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~ 92 (101)
+..|.++.++ .|+++++++.+.++.-+ ++++.+|.+.+. .+++ ..++.+|.|++|.|....
T Consensus 389 ~~~l~~~l~~~~gI~i~~~~~v~~i~~~-~g~v~~v~~~~~---~~g~-------~~~i~~D~v~~~~G~~p~ 450 (517)
T PRK15317 389 DQVLQDKLRSLPNVTIITNAQTTEVTGD-GDKVTGLTYKDR---TTGE-------EHHLELEGVFVQIGLVPN 450 (517)
T ss_pred cHHHHHHHhcCCCcEEEECcEEEEEEcC-CCcEEEEEEEEC---CCCc-------EEEEEcCEEEEeECCccC
Confidence 3455555555 59999999999999763 578888887641 1232 157999999999998763
No 250
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=92.75 E-value=0.69 Score=37.08 Aligned_cols=55 Identities=22% Similarity=0.243 Sum_probs=34.7
Q ss_pred HHHHHHHHHCCCEEecCCceeEEE--EecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCch
Q psy9487 22 KWLGEQAEAMGVEIYPGIPASEVL--YHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH 92 (101)
Q Consensus 22 ~~l~~~A~~~Gv~i~~gt~v~~i~--~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~ 92 (101)
+++.+++++.||+++.++. +.+. .+ ...+.|++.+ |+. .++.++.+|+|+|+...
T Consensus 96 ~~~~~~l~~~gV~~~~g~~-~~~~~~~~--~~~v~V~~~~------g~~-------~~~~~d~lViATGs~p~ 152 (466)
T PRK07845 96 ADIRARLEREGVRVIAGRG-RLIDPGLG--PHRVKVTTAD------GGE-------ETLDADVVLIATGASPR 152 (466)
T ss_pred HHHHHHHHHCCCEEEEEEE-EEeecccC--CCEEEEEeCC------Cce-------EEEecCEEEEcCCCCCC
Confidence 3456677888999999854 2222 22 2333354432 110 37999999999999764
No 251
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=92.47 E-value=0.94 Score=36.71 Aligned_cols=60 Identities=18% Similarity=0.215 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487 20 VVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL 93 (101)
Q Consensus 20 ~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l 93 (101)
+.+++.+..++.|++|++++.+.++... ++. ..|...+ ++. +.++.+|.||+|.|.....
T Consensus 222 ~~~~l~~~L~~~gV~i~~~~~v~~v~~~-~~~-~~v~~~~------~~~------~~~i~~D~vl~a~G~~pn~ 281 (484)
T TIGR01438 222 CANKVGEHMEEHGVKFKRQFVPIKVEQI-EAK-VKVTFTD------STN------GIEEEYDTVLLAIGRDACT 281 (484)
T ss_pred HHHHHHHHHHHcCCEEEeCceEEEEEEc-CCe-EEEEEec------CCc------ceEEEeCEEEEEecCCcCC
Confidence 4456677888899999999999988753 333 2354433 110 1479999999999976544
No 252
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=92.45 E-value=0.49 Score=36.55 Aligned_cols=47 Identities=17% Similarity=0.315 Sum_probs=35.5
Q ss_pred HHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCch
Q psy9487 26 EQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH 92 (101)
Q Consensus 26 ~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~ 92 (101)
+.+++.|++++.++.|+++..+ + +. |.+. +.++.+|.+|+|+|+...
T Consensus 66 ~~~~~~gv~~~~~~~V~~id~~-~-~~--v~~~----------------~~~~~yd~LVlATG~~~~ 112 (377)
T PRK04965 66 EFAEQFNLRLFPHTWVTDIDAE-A-QV--VKSQ----------------GNQWQYDKLVLATGASAF 112 (377)
T ss_pred HHHHhCCCEEECCCEEEEEECC-C-CE--EEEC----------------CeEEeCCEEEECCCCCCC
Confidence 4467789999999999998764 3 32 2332 357999999999998764
No 253
>KOG2311|consensus
Probab=92.24 E-value=0.37 Score=40.42 Aligned_cols=58 Identities=19% Similarity=0.275 Sum_probs=43.1
Q ss_pred EhHHHHHHHHHHHHH------CCCEEecCCceeEEEEecCC----cEEEEEeccccccCCCCCCcCCCCCeEEEccEEEE
Q psy9487 16 RLGHVVKWLGEQAEA------MGVEIYPGIPASEVLYHGDG----SVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIF 85 (101)
Q Consensus 16 ~r~~~d~~l~~~A~~------~Gv~i~~gt~v~~i~~~~~g----~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~ 85 (101)
-|.++|+-|+++... ...+|+++ .|.+++..+++ +|.||.+.+ |+.|+|+-||+
T Consensus 117 ~RAQiDR~lYkk~MQkei~st~nL~ire~-~V~dliv~~~~~~~~~~~gV~l~d---------------gt~v~a~~Vil 180 (679)
T KOG2311|consen 117 LRAQIDRKLYKKNMQKEISSTPNLEIREG-AVADLIVEDPDDGHCVVSGVVLVD---------------GTVVYAESVIL 180 (679)
T ss_pred hHHhhhHHHHHHHHHHHhccCCcchhhhh-hhhheeeccCCCCceEEEEEEEec---------------CcEeccceEEE
Confidence 467777777777655 34677776 56666654322 499999987 78999999999
Q ss_pred eecC
Q psy9487 86 AEGC 89 (101)
Q Consensus 86 A~G~ 89 (101)
.+|-
T Consensus 181 TTGT 184 (679)
T KOG2311|consen 181 TTGT 184 (679)
T ss_pred eecc
Confidence 9994
No 254
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=92.05 E-value=0.95 Score=36.91 Aligned_cols=60 Identities=25% Similarity=0.262 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487 19 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL 93 (101)
Q Consensus 19 ~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l 93 (101)
.+.+.+.+..++.|+++++++.++.+..+ ++. +.+...+ |+ +.++.|+.|++|.|.....
T Consensus 215 ei~~~~~~~l~~~gv~i~~~~~v~~~~~~-~~~-v~v~~~~------g~-------~~~~~ad~vLvAiGR~Pn~ 274 (454)
T COG1249 215 EISKELTKQLEKGGVKILLNTKVTAVEKK-DDG-VLVTLED------GE-------GGTIEADAVLVAIGRKPNT 274 (454)
T ss_pred HHHHHHHHHHHhCCeEEEccceEEEEEec-CCe-EEEEEec------CC-------CCEEEeeEEEEccCCccCC
Confidence 34556677777778999999999999874 333 4466543 11 1279999999999987544
No 255
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=91.96 E-value=0.86 Score=40.19 Aligned_cols=64 Identities=20% Similarity=0.263 Sum_probs=47.6
Q ss_pred hHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487 17 LGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL 93 (101)
Q Consensus 17 r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l 93 (101)
+..+...+.++.++.||++++++.+.++.- ++++.+|++... +++ +.++.+|.|+++.|.....
T Consensus 350 ~~~~~~~l~~~L~~~GV~i~~~~~v~~i~g--~~~v~~V~l~~~----~g~-------~~~i~~D~V~va~G~~Pnt 413 (985)
T TIGR01372 350 RADVSPEARAEARELGIEVLTGHVVAATEG--GKRVSGVAVARN----GGA-------GQRLEADALAVSGGWTPVV 413 (985)
T ss_pred CcchhHHHHHHHHHcCCEEEcCCeEEEEec--CCcEEEEEEEec----CCc-------eEEEECCEEEEcCCcCchh
Confidence 334556678888999999999999999863 467778876531 111 3689999999999976543
No 256
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=91.85 E-value=1.3 Score=36.63 Aligned_cols=76 Identities=18% Similarity=0.179 Sum_probs=51.8
Q ss_pred CCCCCCCCcEEEEhHHHHHHHHHHHHHCCC--EEecCCceeEEEEecCC---cEEEEEeccccccCCCCCCcCCCCCeEE
Q psy9487 4 GMPMNNHGNYVVRLGHVVKWLGEQAEAMGV--EIYPGIPASEVLYHGDG---SVKGIATGDVGIAKDGSPKDTFARGMEL 78 (101)
Q Consensus 4 ~~~~~~~~~~~v~r~~~d~~l~~~A~~~Gv--~i~~gt~v~~i~~~~~g---~v~GV~~~~~g~~~~g~~~~~~~~g~~i 78 (101)
.+|++..---..++.++-++|.+-|+.-+. .|.++|+|.++...+|. .-+.|.+.+ +|+. .+-
T Consensus 70 dfp~p~~~p~f~~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~-----~g~~-------~~~ 137 (531)
T PF00743_consen 70 DFPFPEDYPDFPSHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTEN-----DGKE-------ETE 137 (531)
T ss_dssp TS-HCCCCSSSEBHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETT-----TTEE-------EEE
T ss_pred CcCCCCCCCCCCCHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeec-----CCeE-------EEE
Confidence 355555433356889999999999999886 68999999999875442 234466543 2221 344
Q ss_pred EccEEEEeecCCc
Q psy9487 79 HAKVTIFAEGCHG 91 (101)
Q Consensus 79 ~A~~VI~A~G~~s 91 (101)
..|.||+|+|-.+
T Consensus 138 ~fD~VvvatG~~~ 150 (531)
T PF00743_consen 138 EFDAVVVATGHFS 150 (531)
T ss_dssp EECEEEEEE-SSS
T ss_pred EeCeEEEcCCCcC
Confidence 5799999999875
No 257
>PLN02546 glutathione reductase
Probab=91.75 E-value=1.4 Score=36.59 Aligned_cols=56 Identities=21% Similarity=0.331 Sum_probs=39.8
Q ss_pred HHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487 22 KWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL 93 (101)
Q Consensus 22 ~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l 93 (101)
.++.++.++.|+++++++.+.++.-++++.+ .+.+.+ +....+|.||+|.|.....
T Consensus 297 ~~l~~~L~~~GV~i~~~~~v~~i~~~~~g~v-~v~~~~---------------g~~~~~D~Viva~G~~Pnt 352 (558)
T PLN02546 297 DFVAEQMSLRGIEFHTEESPQAIIKSADGSL-SLKTNK---------------GTVEGFSHVMFATGRKPNT 352 (558)
T ss_pred HHHHHHHHHCCcEEEeCCEEEEEEEcCCCEE-EEEECC---------------eEEEecCEEEEeeccccCC
Confidence 4566778889999999999999975323433 344432 2344589999999987654
No 258
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=91.58 E-value=0.92 Score=36.01 Aligned_cols=53 Identities=9% Similarity=0.061 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCch
Q psy9487 19 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH 92 (101)
Q Consensus 19 ~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~ 92 (101)
.+.+.+.+..++.|+++++++.++++. +. .|.+.+ |.++.+|.||+|.|....
T Consensus 190 ~~~~~l~~~l~~~gI~i~~~~~v~~i~---~~---~v~~~~---------------g~~~~~D~vl~a~G~~pn 242 (438)
T PRK13512 190 DMNQPILDELDKREIPYRLNEEIDAIN---GN---EVTFKS---------------GKVEHYDMIIEGVGTHPN 242 (438)
T ss_pred HHHHHHHHHHHhcCCEEEECCeEEEEe---CC---EEEECC---------------CCEEEeCEEEECcCCCcC
Confidence 345667788889999999999999984 22 344433 357899999999997754
No 259
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=91.56 E-value=0.47 Score=40.78 Aligned_cols=49 Identities=20% Similarity=0.274 Sum_probs=37.2
Q ss_pred HHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCch
Q psy9487 25 GEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH 92 (101)
Q Consensus 25 ~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~ 92 (101)
.+..++.|++++++++|+.|..+ + + -|.+.+ |.++.+|.+|+|+|+...
T Consensus 61 ~~~~~~~gv~~~~g~~V~~Id~~-~-k--~V~~~~---------------g~~~~yD~LVlATGs~p~ 109 (785)
T TIGR02374 61 KDWYEKHGITLYTGETVIQIDTD-Q-K--QVITDA---------------GRTLSYDKLILATGSYPF 109 (785)
T ss_pred HHHHHHCCCEEEcCCeEEEEECC-C-C--EEEECC---------------CcEeeCCEEEECCCCCcC
Confidence 34567789999999999999763 3 2 244543 467999999999998754
No 260
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=91.55 E-value=1.3 Score=33.39 Aligned_cols=59 Identities=25% Similarity=0.277 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEE--EEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCch
Q psy9487 18 GHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKG--IATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH 92 (101)
Q Consensus 18 ~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~G--V~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~ 92 (101)
..+...+.+..++.|+++++++.+.++..+ ++.... +...+ +..+++|+++++.|....
T Consensus 178 ~~~~~~~~~~l~~~gi~~~~~~~~~~i~~~-~~~~~~~~~~~~~---------------~~~~~~d~~~~~~g~~p~ 238 (415)
T COG0446 178 PEVAEELAELLEKYGVELLLGTKVVGVEGK-GNTLVVERVVGID---------------GEEIKADLVIIGPGERPN 238 (415)
T ss_pred HHHHHHHHHHHHHCCcEEEeCCceEEEEcc-cCcceeeEEEEeC---------------CcEEEeeEEEEeeccccc
Confidence 568888999999999999999999999874 344333 23332 478999999999998773
No 261
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=91.43 E-value=0.56 Score=36.84 Aligned_cols=53 Identities=11% Similarity=0.083 Sum_probs=36.0
Q ss_pred HHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEE--ccEEEEeecCCch
Q psy9487 24 LGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELH--AKVTIFAEGCHGH 92 (101)
Q Consensus 24 l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~--A~~VI~A~G~~s~ 92 (101)
..+..++.|++++.++.|++|..+ + +.+-+.... + +.++. +|.+|+|+|+...
T Consensus 62 ~~~~~~~~gv~~~~~~~V~~id~~-~-~~v~~~~~~-----~---------~~~~~~~yd~lviAtG~~~~ 116 (444)
T PRK09564 62 TPEEFIKSGIDVKTEHEVVKVDAK-N-KTITVKNLK-----T---------GSIFNDTYDKLMIATGARPI 116 (444)
T ss_pred CHHHHHHCCCeEEecCEEEEEECC-C-CEEEEEECC-----C---------CCEEEecCCEEEECCCCCCC
Confidence 346677889999999999999764 3 323233211 1 23444 9999999999753
No 262
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=91.19 E-value=0.52 Score=36.00 Aligned_cols=49 Identities=14% Similarity=0.083 Sum_probs=36.2
Q ss_pred HHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCch
Q psy9487 24 LGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH 92 (101)
Q Consensus 24 l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~ 92 (101)
+.+.+++.|++++.+ +|++|..+ + + .|.+.+ |.++..|.+|+|+|+...
T Consensus 60 ~~~~~~~~gv~~~~~-~v~~id~~-~-~--~V~~~~---------------g~~~~yD~LviAtG~~~~ 108 (364)
T TIGR03169 60 LRRLARQAGARFVIA-EATGIDPD-R-R--KVLLAN---------------RPPLSYDVLSLDVGSTTP 108 (364)
T ss_pred HHHHHHhcCCEEEEE-EEEEEecc-c-C--EEEECC---------------CCcccccEEEEccCCCCC
Confidence 456677889999886 78888764 3 3 355544 457999999999998754
No 263
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=91.10 E-value=2 Score=33.40 Aligned_cols=56 Identities=20% Similarity=0.238 Sum_probs=36.7
Q ss_pred hHHHHHHHHHHHHHCCC-EEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecC
Q psy9487 17 LGHVVKWLGEQAEAMGV-EIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGC 89 (101)
Q Consensus 17 r~~~d~~l~~~A~~~Gv-~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~ 89 (101)
+.=+.+++..-++.++. +|+++++|++|..+ ++. +.|.+.+ |.++.+|.||+|.-.
T Consensus 217 ~~G~~~l~~~l~~~l~~~~i~~~~~V~~i~~~-~~~-~~v~~~~---------------g~~~~~d~vI~a~p~ 273 (451)
T PRK11883 217 KGGLQSLIEALEEKLPAGTIHKGTPVTKIDKS-GDG-YEIVLSN---------------GGEIEADAVIVAVPH 273 (451)
T ss_pred ccHHHHHHHHHHHhCcCCeEEeCCEEEEEEEc-CCe-EEEEECC---------------CCEEEcCEEEECCCH
Confidence 33344443444444444 89999999999885 443 3455543 457999999999553
No 264
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=91.10 E-value=0.69 Score=38.22 Aligned_cols=58 Identities=14% Similarity=0.193 Sum_probs=42.3
Q ss_pred HHHHHHHC-CCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCc
Q psy9487 24 LGEQAEAM-GVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG 91 (101)
Q Consensus 24 l~~~A~~~-Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s 91 (101)
++..|.+. +..|++++.|+.|+++ ++++++|+....+ .++. -..+.++.||+++|+..
T Consensus 208 ~l~~a~~~~nl~v~t~a~v~ri~~~-~~r~~gv~~~~~~---~~~~------~~~~a~~~viL~AGai~ 266 (542)
T COG2303 208 YLKPALKRPNLTLLTGARVRRILLE-GDRAVGVEVEIGD---GGTI------ETAVAAREVVLAAGAIN 266 (542)
T ss_pred cchhHhcCCceEEecCCEEEEEEEE-CCeeEEEEEEeCC---CCce------EEEecCceEEEeccccC
Confidence 34445554 4999999999999996 7899999987521 1111 14567889999999765
No 265
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=91.03 E-value=0.69 Score=36.06 Aligned_cols=45 Identities=13% Similarity=0.173 Sum_probs=34.2
Q ss_pred HHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCc
Q psy9487 28 AEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG 91 (101)
Q Consensus 28 A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s 91 (101)
.++.|++++.++.|..+..+ + + .|.+.+ |.++.+|.+|+|+|+..
T Consensus 68 ~~~~~i~~~~g~~V~~id~~-~-~--~v~~~~---------------g~~~~yd~LViATGs~~ 112 (396)
T PRK09754 68 WQENNVHLHSGVTIKTLGRD-T-R--ELVLTN---------------GESWHWDQLFIATGAAA 112 (396)
T ss_pred HHHCCCEEEcCCEEEEEECC-C-C--EEEECC---------------CCEEEcCEEEEccCCCC
Confidence 45679999999999998764 3 2 234433 45799999999999875
No 266
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=91.01 E-value=0.28 Score=42.54 Aligned_cols=55 Identities=22% Similarity=0.410 Sum_probs=46.1
Q ss_pred HHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487 22 KWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL 93 (101)
Q Consensus 22 ~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l 93 (101)
..|....+++|+.++++....++.- ++++.+|+..| |..+.|+.||.|+|....+
T Consensus 191 ~lL~~~le~~Gi~~~l~~~t~ei~g--~~~~~~vr~~D---------------G~~i~ad~VV~a~GIrPn~ 245 (793)
T COG1251 191 RLLRRKLEDLGIKVLLEKNTEEIVG--EDKVEGVRFAD---------------GTEIPADLVVMAVGIRPND 245 (793)
T ss_pred HHHHHHHHhhcceeecccchhhhhc--CcceeeEeecC---------------CCcccceeEEEeccccccc
Confidence 3566777889999999998888875 57899999877 6789999999999987554
No 267
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=90.65 E-value=1.3 Score=39.09 Aligned_cols=67 Identities=15% Similarity=0.057 Sum_probs=43.4
Q ss_pred HHHHHHCCCEEecCCceeEEEEec-CCcEEEEEecccc---ccCCCCCCcCCCCC--eEEEccEEEEeecCCch
Q psy9487 25 GEQAEAMGVEIYPGIPASEVLYHG-DGSVKGIATGDVG---IAKDGSPKDTFARG--MELHAKVTIFAEGCHGH 92 (101)
Q Consensus 25 ~~~A~~~Gv~i~~gt~v~~i~~~~-~g~v~GV~~~~~g---~~~~g~~~~~~~~g--~~i~A~~VI~A~G~~s~ 92 (101)
.++|.+.|+++++.+.++++.-++ +++|.++++...- -+.+|...+.. +| .++.||.||+|.|....
T Consensus 491 ~~~a~eeGV~~~~~~~p~~i~~d~~~~~V~~v~~~~~~l~~~d~~Gr~~~~~-~G~e~~i~aD~VI~AiG~~p~ 563 (944)
T PRK12779 491 LHHALEEGINLAVLRAPREFIGDDHTHFVTHALLDVNELGEPDKSGRRSPKP-TGEIERVPVDLVIMALGNTAN 563 (944)
T ss_pred HHHHHHCCCEEEeCcceEEEEecCCCCEEEEEEEEEEEeccccCcCceeeec-CCceEEEECCEEEEcCCcCCC
Confidence 456778899999999999997652 3478887653210 01122211111 12 57999999999997653
No 268
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=90.65 E-value=2.9 Score=35.64 Aligned_cols=74 Identities=14% Similarity=0.069 Sum_probs=40.9
Q ss_pred HHHHHHHHH-HHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487 20 VVKWLGEQA-EAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL 93 (101)
Q Consensus 20 ~d~~l~~~A-~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l 93 (101)
+.+++.+.. ++.||+|++++.|+++.-++++..+.+...+...+.++.+...+....++.+|.||+|.|.....
T Consensus 355 is~~l~~~ll~~~GV~I~~~~~V~~I~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~aD~VlvAtGr~Pnt 429 (659)
T PTZ00153 355 VAKYFERVFLKSKPVRVHLNTLIEYVRAGKGNQPVIIGHSERQTGESDGPKKNMNDIKETYVDSCLVATGRKPNT 429 (659)
T ss_pred HHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEEEeccccccccccccccccceEEEcCEEEEEECcccCC
Confidence 344545443 56899999999999997542222233433220000000000001112479999999999987654
No 269
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=90.64 E-value=1.4 Score=34.66 Aligned_cols=44 Identities=7% Similarity=0.262 Sum_probs=31.9
Q ss_pred HHCC-CEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecC
Q psy9487 29 EAMG-VEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGC 89 (101)
Q Consensus 29 ~~~G-v~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~ 89 (101)
++++ ++|+.+++|+.|..+ ++.+ .|++.+ |.++.||.||+|.-+
T Consensus 233 ~~l~~~~i~~~~~V~~I~~~-~~~~-~v~~~~---------------g~~~~ad~VI~t~P~ 277 (462)
T TIGR00562 233 KRLKLTKVYKGTKVTKLSHR-GSNY-TLELDN---------------GVTVETDSVVVTAPH 277 (462)
T ss_pred HHhccCeEEcCCeEEEEEec-CCcE-EEEECC---------------CcEEEcCEEEECCCH
Confidence 4444 799999999999885 4433 355543 357999999999654
No 270
>PRK07846 mycothione reductase; Reviewed
Probab=90.56 E-value=1.5 Score=35.07 Aligned_cols=49 Identities=18% Similarity=0.153 Sum_probs=36.2
Q ss_pred HHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487 28 AEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL 93 (101)
Q Consensus 28 A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l 93 (101)
..+.|+++++++.++++..+ ++.+ .|.+.+ +.++.+|.||+|.|.....
T Consensus 216 l~~~~v~i~~~~~v~~i~~~-~~~v-~v~~~~---------------g~~i~~D~vl~a~G~~pn~ 264 (451)
T PRK07846 216 LASKRWDVRLGRNVVGVSQD-GSGV-TLRLDD---------------GSTVEADVLLVATGRVPNG 264 (451)
T ss_pred HHhcCeEEEeCCEEEEEEEc-CCEE-EEEECC---------------CcEeecCEEEEEECCccCc
Confidence 34578999999999999764 3333 355433 3579999999999987654
No 271
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=90.38 E-value=2 Score=34.54 Aligned_cols=56 Identities=21% Similarity=0.251 Sum_probs=37.7
Q ss_pred HHHHHHHHCC--CEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCc
Q psy9487 23 WLGEQAEAMG--VEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG 91 (101)
Q Consensus 23 ~l~~~A~~~G--v~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s 91 (101)
.+...+++.+ -+|...+.|+.+.+++++...-|.+.+.+ + .++.|+.||+|+|..+
T Consensus 87 y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~-----~--------~~~~a~~vV~ATG~~~ 144 (443)
T COG2072 87 YIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGG-----T--------GELTADFVVVATGHLS 144 (443)
T ss_pred HHHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCC-----e--------eeEecCEEEEeecCCC
Confidence 3466777766 34455556666888766777778886511 1 2278999999999854
No 272
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=90.29 E-value=1.8 Score=33.18 Aligned_cols=69 Identities=23% Similarity=0.355 Sum_probs=43.3
Q ss_pred HHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccC---CCCCCcC--CCCCeEEEccEEEEeecCCch
Q psy9487 22 KWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAK---DGSPKDT--FARGMELHAKVTIFAEGCHGH 92 (101)
Q Consensus 22 ~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~---~g~~~~~--~~~g~~i~A~~VI~A~G~~s~ 92 (101)
..+.++.++.|+++++++.+.++.- ++++..|++.+...+. ++.+... -..+.++.+|.||+|.|....
T Consensus 214 ~~~~~~l~~~gi~i~~~~~v~~i~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~D~vi~a~G~~p~ 287 (352)
T PRK12770 214 KYEIERLIARGVEFLELVTPVRIIG--EGRVEGVELAKMRLGEPDESGRPRPVPIPGSEFVLEADTVVFAIGEIPT 287 (352)
T ss_pred HHHHHHHHHcCCEEeeccCceeeec--CCcEeEEEEEEEEecCcCcccCcCceecCCCeEEEECCEEEECcccCCC
Confidence 4556778899999999999999864 3567677654311000 0000000 001368999999999998764
No 273
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=90.17 E-value=0.91 Score=35.58 Aligned_cols=49 Identities=12% Similarity=0.124 Sum_probs=33.6
Q ss_pred HHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEE--ccEEEEeecCCch
Q psy9487 28 AEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELH--AKVTIFAEGCHGH 92 (101)
Q Consensus 28 A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~--A~~VI~A~G~~s~ 92 (101)
+++.|++++.++.|+.+..+ ++.+ -+.... + +.++. +|.+|+|+|+...
T Consensus 54 ~~~~gv~~~~~~~V~~id~~-~~~v-~~~~~~-----~---------~~~~~~~yd~lIiATG~~p~ 104 (427)
T TIGR03385 54 IKKRGIDVKTNHEVIEVNDE-RQTV-VVRNNK-----T---------NETYEESYDYLILSPGASPI 104 (427)
T ss_pred HHhcCCeEEecCEEEEEECC-CCEE-EEEECC-----C---------CCEEecCCCEEEECCCCCCC
Confidence 37789999999999998763 3332 233211 0 24567 9999999998653
No 274
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=90.17 E-value=0.78 Score=40.02 Aligned_cols=49 Identities=20% Similarity=0.206 Sum_probs=36.3
Q ss_pred HHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCch
Q psy9487 25 GEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH 92 (101)
Q Consensus 25 ~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~ 92 (101)
.+..++.|++++.+++|..+..+ .++ |.+.+ |.++.+|.+|+|+|++..
T Consensus 66 ~~~~~~~gI~~~~g~~V~~Id~~--~~~--V~~~~---------------G~~i~yD~LVIATGs~p~ 114 (847)
T PRK14989 66 EGFYEKHGIKVLVGERAITINRQ--EKV--IHSSA---------------GRTVFYDKLIMATGSYPW 114 (847)
T ss_pred HHHHHhCCCEEEcCCEEEEEeCC--CcE--EEECC---------------CcEEECCEEEECCCCCcC
Confidence 34556789999999999988653 232 34433 457999999999998764
No 275
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=90.09 E-value=1.3 Score=36.09 Aligned_cols=72 Identities=22% Similarity=0.284 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHCC-CEEecCCceeEEEEecCCcEEEEEec---cccccCCCCCCcCC-CCCeEEEccEEEEeecCCchh
Q psy9487 19 HVVKWLGEQAEAMG-VEIYPGIPASEVLYHGDGSVKGIATG---DVGIAKDGSPKDTF-ARGMELHAKVTIFAEGCHGHL 93 (101)
Q Consensus 19 ~~d~~l~~~A~~~G-v~i~~gt~v~~i~~~~~g~v~GV~~~---~~g~~~~g~~~~~~-~~g~~i~A~~VI~A~G~~s~l 93 (101)
-|.+-+ ++++..| +++.....|..+... +++|+||+.. ...+. -|++.+.- -...+++|..||+++|.-+-.
T Consensus 154 pFvr~~-re~~~~~~v~f~~RHrV~~l~~t-~grvtGv~GdVLeps~v~-RG~~SSR~~~GdFef~A~aviv~SGGIGGn 230 (552)
T COG3573 154 PFVRRL-REAQRRGRVTFRFRHRVDGLTTT-GGRVTGVRGDVLEPSDVE-RGQPSSREVVGDFEFSASAVIVASGGIGGN 230 (552)
T ss_pred HHHHHH-HHHHhCCceEEEeeeeccceEee-CCeEeeecccccCCCccc-cCCCccceeecceEEeeeeEEEecCCcCCC
Confidence 455553 4444455 999999999999985 8999999743 11111 12222111 112479999999999976655
No 276
>PLN02268 probable polyamine oxidase
Probab=90.01 E-value=1.1 Score=35.16 Aligned_cols=40 Identities=23% Similarity=0.340 Sum_probs=30.6
Q ss_pred CCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEee
Q psy9487 31 MGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAE 87 (101)
Q Consensus 31 ~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~ 87 (101)
.+++|+++++|++|..+ ++.+. |.+.+ |..+.|+.||+|.
T Consensus 209 ~~~~i~~~~~V~~i~~~-~~~v~-v~~~~---------------g~~~~ad~VIva~ 248 (435)
T PLN02268 209 KGLDIRLNHRVTKIVRR-YNGVK-VTVED---------------GTTFVADAAIIAV 248 (435)
T ss_pred ccCceeCCCeeEEEEEc-CCcEE-EEECC---------------CcEEEcCEEEEec
Confidence 47789999999999986 44433 55543 3579999999995
No 277
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=90.01 E-value=1.7 Score=34.74 Aligned_cols=49 Identities=20% Similarity=0.170 Sum_probs=35.8
Q ss_pred HHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487 28 AEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL 93 (101)
Q Consensus 28 A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l 93 (101)
..+.|+++++++.++++..+ ++.+ .|.+.+ |.++.+|.||+|.|.....
T Consensus 219 ~~~~gI~i~~~~~V~~i~~~-~~~v-~v~~~~---------------g~~i~~D~vl~a~G~~pn~ 267 (452)
T TIGR03452 219 IAKKKWDIRLGRNVTAVEQD-GDGV-TLTLDD---------------GSTVTADVLLVATGRVPNG 267 (452)
T ss_pred HHhcCCEEEeCCEEEEEEEc-CCeE-EEEEcC---------------CCEEEcCEEEEeeccCcCC
Confidence 34579999999999999764 3433 344433 3579999999999977643
No 278
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=89.92 E-value=1.8 Score=34.36 Aligned_cols=52 Identities=23% Similarity=0.263 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCch
Q psy9487 20 VVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH 92 (101)
Q Consensus 20 ~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~ 92 (101)
+.+.+.+..++.|++++.+ ++..+ + ... +.|.. + |.+++++.||+|+|+...
T Consensus 92 ~~~~~~~~l~~~gV~~~~g-~~~~v--~-~~~-v~v~~-~---------------g~~~~~d~lIiATGs~p~ 143 (446)
T TIGR01424 92 LSGLYKRLLANAGVELLEG-RARLV--G-PNT-VEVLQ-D---------------GTTYTAKKILIAVGGRPQ 143 (446)
T ss_pred HHHHHHHHHHhCCcEEEEE-EEEEe--c-CCE-EEEec-C---------------CeEEEcCEEEEecCCcCC
Confidence 3445566778899999987 44444 2 222 22221 1 357999999999998753
No 279
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=89.74 E-value=1.8 Score=34.70 Aligned_cols=53 Identities=19% Similarity=0.098 Sum_probs=31.8
Q ss_pred HHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCc
Q psy9487 23 WLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG 91 (101)
Q Consensus 23 ~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s 91 (101)
.+.+..+..||+++.++. ..+..++++..+.|...+ +.+++++.+|+|+|+..
T Consensus 105 ~~~~~~~~~~v~~~~g~~-~~~~~~~~~~~v~v~~~~---------------~~~~~~d~lViATGs~p 157 (475)
T PRK06327 105 GIEGLFKKNKITVLKGRG-SFVGKTDAGYEIKVTGED---------------ETVITAKHVIIATGSEP 157 (475)
T ss_pred HHHHHHHhCCCEEEEEEE-EEecCCCCCCEEEEecCC---------------CeEEEeCEEEEeCCCCC
Confidence 344455668999998753 333222223333332111 25799999999999876
No 280
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=89.66 E-value=1.5 Score=35.07 Aligned_cols=48 Identities=19% Similarity=0.224 Sum_probs=33.0
Q ss_pred HHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCch
Q psy9487 22 KWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH 92 (101)
Q Consensus 22 ~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~ 92 (101)
+++....++.||+++.++.+. . +++. |.+. +..+.++.||+|+|+...
T Consensus 95 ~~~~~~l~~~gv~~~~g~~~~---~-~~~~---v~v~----------------~~~~~~d~vIiAtGs~p~ 142 (450)
T TIGR01421 95 GIYQKNLEKNKVDVIFGHARF---T-KDGT---VEVN----------------GRDYTAPHILIATGGKPS 142 (450)
T ss_pred HHHHHHHHhCCCEEEEEEEEE---c-cCCE---EEEC----------------CEEEEeCEEEEecCCCCC
Confidence 345666778899999997542 2 2333 2332 357999999999998754
No 281
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=89.52 E-value=2.2 Score=35.96 Aligned_cols=67 Identities=21% Similarity=0.175 Sum_probs=40.0
Q ss_pred HHHHHHHCCCEEecCCceeEEEEecCCcE--EEEEeccccccCCCCCCcCCCCC--eEEEccEEEEeecCCc
Q psy9487 24 LGEQAEAMGVEIYPGIPASEVLYHGDGSV--KGIATGDVGIAKDGSPKDTFARG--MELHAKVTIFAEGCHG 91 (101)
Q Consensus 24 l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v--~GV~~~~~g~~~~g~~~~~~~~g--~~i~A~~VI~A~G~~s 91 (101)
..+++.+.|++|++++.+.++.-+ ++++ ..++......+.+|...+..-.| ..+.+|.||+|.|...
T Consensus 367 ei~~a~~eGV~i~~~~~~~~i~~~-~~~~~v~~~~~~~~~~d~~G~~~~~~~~g~~~~i~~D~VI~AiG~~p 437 (652)
T PRK12814 367 EIEEALAEGVSLRELAAPVSIERS-EGGLELTAIKMQQGEPDESGRRRPVPVEGSEFTLQADTVISAIGQQV 437 (652)
T ss_pred HHHHHHHcCCcEEeccCcEEEEec-CCeEEEEEEEEEecccCCCCCCcceecCCceEEEECCEEEECCCCcC
Confidence 356777889999999999998764 4543 33333221111222221111112 3699999999999753
No 282
>PRK10262 thioredoxin reductase; Provisional
Probab=88.87 E-value=3 Score=31.37 Aligned_cols=57 Identities=16% Similarity=0.137 Sum_probs=38.8
Q ss_pred hHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCch
Q psy9487 17 LGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH 92 (101)
Q Consensus 17 r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~ 92 (101)
-..+-+.+.+.+...+++++.+ .|.++..+ ++. ..+.... ..+.++.||+|+|++..
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~-~v~~v~~~-~~~-~~v~~~~----------------~~~~~d~vilAtG~~~~ 118 (321)
T PRK10262 62 GPLLMERMHEHATKFETEIIFD-HINKVDLQ-NRP-FRLTGDS----------------GEYTCDALIIATGASAR 118 (321)
T ss_pred HHHHHHHHHHHHHHCCCEEEee-EEEEEEec-CCe-EEEEecC----------------CEEEECEEEECCCCCCC
Confidence 3455667788888899988876 56677653 333 2233321 36899999999999754
No 283
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=88.45 E-value=2.1 Score=34.40 Aligned_cols=49 Identities=18% Similarity=0.249 Sum_probs=30.8
Q ss_pred HHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCch
Q psy9487 26 EQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH 92 (101)
Q Consensus 26 ~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~ 92 (101)
..+++.||+++.++.. .. +.+.+.|...+ |+ ..++.+|.+|+|+|+...
T Consensus 101 ~~~~~~gV~~~~g~a~---~~--~~~~v~v~~~~------g~-------~~~~~~d~lViATGs~p~ 149 (471)
T PRK06467 101 GMAKGRKVTVVNGLGK---FT--GGNTLEVTGED------GK-------TTVIEFDNAIIAAGSRPI 149 (471)
T ss_pred HHHHhCCCEEEEEEEE---Ec--cCCEEEEecCC------Cc-------eEEEEcCEEEEeCCCCCC
Confidence 3456789999988532 12 23333344322 21 147999999999998653
No 284
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=87.98 E-value=3.3 Score=33.09 Aligned_cols=53 Identities=11% Similarity=0.115 Sum_probs=32.1
Q ss_pred HHHHHCCCEEecCCceeEEEE---ecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCch
Q psy9487 26 EQAEAMGVEIYPGIPASEVLY---HGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH 92 (101)
Q Consensus 26 ~~A~~~Gv~i~~gt~v~~i~~---~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~ 92 (101)
+..++.|++++.+. ++.+-. ++..+.+.|.+.+ |+ ..++++|.+|+|+|+...
T Consensus 100 ~~~~~~gv~~~~g~-a~~i~~~~~~~~~~~~~v~~~~------g~-------~~~~~~d~lViATGs~p~ 155 (472)
T PRK05976 100 ALLKKGKIDVFHGI-GRILGPSIFSPMPGTVSVETET------GE-------NEMIIPENLLIATGSRPV 155 (472)
T ss_pred HHHHhCCCEEEEEE-EEEeCCCCCcCCceEEEEEeCC------Cc-------eEEEEcCEEEEeCCCCCC
Confidence 44567899999985 333311 0012234455433 11 157999999999998763
No 285
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=87.81 E-value=1.3 Score=36.17 Aligned_cols=51 Identities=18% Similarity=0.203 Sum_probs=37.3
Q ss_pred CCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCch
Q psy9487 31 MGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH 92 (101)
Q Consensus 31 ~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~ 92 (101)
..+.++..+++..+.-..+|+ ..+.+.. ..++++ .++..|+||+|+|..-.
T Consensus 291 ~~v~l~~~~ev~~~~~~G~g~-~~l~~~~---~~~~~~-------~t~~~D~vIlATGY~~~ 341 (436)
T COG3486 291 PDVRLLSLSEVQSVEPAGDGR-YRLTLRH---HETGEL-------ETVETDAVILATGYRRA 341 (436)
T ss_pred CCeeeccccceeeeecCCCce-EEEEEee---ccCCCc-------eEEEeeEEEEecccccC
Confidence 348999999999998764555 4455443 234554 78999999999998843
No 286
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=87.62 E-value=2.1 Score=33.92 Aligned_cols=50 Identities=6% Similarity=0.032 Sum_probs=34.2
Q ss_pred HHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCch
Q psy9487 29 EAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH 92 (101)
Q Consensus 29 ~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~ 92 (101)
++.|++++.+++|.+|..+ + +.+-+...+ +++ ..++.+|.+|+|+|+...
T Consensus 69 ~~~~i~v~~~~~V~~Id~~-~-~~v~~~~~~-----~~~-------~~~~~yd~lviAtGs~~~ 118 (438)
T PRK13512 69 DRKQITVKTYHEVIAINDE-R-QTVTVLNRK-----TNE-------QFEESYDKLILSPGASAN 118 (438)
T ss_pred HhCCCEEEeCCEEEEEECC-C-CEEEEEECC-----CCc-------EEeeecCEEEECCCCCCC
Confidence 5579999999999999764 3 333333221 111 135789999999999764
No 287
>KOG1335|consensus
Probab=87.49 E-value=4.1 Score=33.54 Aligned_cols=60 Identities=22% Similarity=0.304 Sum_probs=44.4
Q ss_pred HHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCch
Q psy9487 22 KWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH 92 (101)
Q Consensus 22 ~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~ 92 (101)
+.+.+-.++.|.+|.++|.|.....+.||. +-|++.+ .++++. +++.+|++.+|.|....
T Consensus 256 k~~qr~L~kQgikF~l~tkv~~a~~~~dg~-v~i~ve~---ak~~k~-------~tle~DvlLVsiGRrP~ 315 (506)
T KOG1335|consen 256 KAFQRVLQKQGIKFKLGTKVTSATRNGDGP-VEIEVEN---AKTGKK-------ETLECDVLLVSIGRRPF 315 (506)
T ss_pred HHHHHHHHhcCceeEeccEEEEeeccCCCc-eEEEEEe---cCCCce-------eEEEeeEEEEEccCccc
Confidence 344445566899999999999999875664 4466665 244543 79999999999997654
No 288
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=86.92 E-value=4.6 Score=32.44 Aligned_cols=60 Identities=12% Similarity=0.094 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487 20 VVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL 93 (101)
Q Consensus 20 ~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l 93 (101)
+.+.+.+..++. +++++++.++++..+ ++.+ .+...+ .+++ ..++.+|.||+|.|.....
T Consensus 217 ~~~~~~~~l~~~-v~i~~~~~v~~i~~~-~~~~-~v~~~~----~~~~-------~~~i~~D~vi~a~G~~pn~ 276 (471)
T PRK06467 217 IVKVFTKRIKKQ-FNIMLETKVTAVEAK-EDGI-YVTMEG----KKAP-------AEPQRYDAVLVAVGRVPNG 276 (471)
T ss_pred HHHHHHHHHhhc-eEEEcCCEEEEEEEc-CCEE-EEEEEe----CCCc-------ceEEEeCEEEEeecccccC
Confidence 344566667777 999999999999764 3333 344432 1111 2579999999999987765
No 289
>PRK06116 glutathione reductase; Validated
Probab=86.85 E-value=3.1 Score=32.93 Aligned_cols=46 Identities=22% Similarity=0.290 Sum_probs=30.7
Q ss_pred HHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCch
Q psy9487 24 LGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH 92 (101)
Q Consensus 24 l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~ 92 (101)
+.+..++.|++++.++ ++.+ + .. .|++ + +.++.++.+|+|+|+...
T Consensus 99 ~~~~l~~~gv~~~~g~-~~~v--~-~~---~v~~-~---------------g~~~~~d~lViATGs~p~ 144 (450)
T PRK06116 99 YRNGLENNGVDLIEGF-ARFV--D-AH---TVEV-N---------------GERYTADHILIATGGRPS 144 (450)
T ss_pred HHHHHHhCCCEEEEEE-EEEc--c-CC---EEEE-C---------------CEEEEeCEEEEecCCCCC
Confidence 3444667899999885 3333 2 22 2333 3 367999999999998764
No 290
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=86.55 E-value=3.6 Score=33.37 Aligned_cols=60 Identities=22% Similarity=0.215 Sum_probs=36.8
Q ss_pred CCCEE-ecCCceeEEEEecCCcEEEEEeccc--cccCCCCCCcCCCCC--eEEEccEEEEeecCC
Q psy9487 31 MGVEI-YPGIPASEVLYHGDGSVKGIATGDV--GIAKDGSPKDTFARG--MELHAKVTIFAEGCH 90 (101)
Q Consensus 31 ~Gv~i-~~gt~v~~i~~~~~g~v~GV~~~~~--g~~~~g~~~~~~~~g--~~i~A~~VI~A~G~~ 90 (101)
.|+++ +.++.+.++.-+++++|.+|++... .-+.+|...+..-+| .++.+|.||+|.|..
T Consensus 349 ~gv~~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~Gr~~p~~~~g~~~~i~~D~Vi~AiG~~ 413 (485)
T TIGR01317 349 YGRDPREYSILTKEFIGDDEGKVTALRTVRVEWKKSQDGKWQFVEIPGSEEVFEADLVLLAMGFV 413 (485)
T ss_pred cCccceEEecCcEEEEEcCCCeEEEEEEEEEEeccCCCCCccceecCCceEEEECCEEEEccCcC
Confidence 46654 4677888887643478999875321 111234322222222 479999999999964
No 291
>PLN02576 protoporphyrinogen oxidase
Probab=86.27 E-value=4.2 Score=32.39 Aligned_cols=53 Identities=11% Similarity=0.175 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHCC-CEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEee
Q psy9487 19 HVVKWLGEQAEAMG-VEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAE 87 (101)
Q Consensus 19 ~~d~~l~~~A~~~G-v~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~ 87 (101)
.+-+.|+ +.++ .+|.++++|+.|..+ ++..+.|.+.. .+| ...+.||.||+|.
T Consensus 240 ~L~~~la---~~l~~~~i~l~~~V~~I~~~-~~~~~~v~~~~----~~g--------~~~~~ad~VI~a~ 293 (496)
T PLN02576 240 TLPDALA---KRLGKDKVKLNWKVLSLSKN-DDGGYSLTYDT----PEG--------KVNVTAKAVVMTA 293 (496)
T ss_pred HHHHHHH---HhhCcCcEEcCCEEEEEEEC-CCCcEEEEEec----CCC--------ceeEEeCEEEECC
Confidence 3444444 4455 689999999999986 44312344332 111 1369999999995
No 292
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=86.20 E-value=4 Score=32.29 Aligned_cols=52 Identities=21% Similarity=0.157 Sum_probs=32.7
Q ss_pred HHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCch
Q psy9487 23 WLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH 92 (101)
Q Consensus 23 ~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~ 92 (101)
.+.+.+++.|++++.++. ..+ + .+. +.|...+ |+ ..+++++.+|+|+|+...
T Consensus 99 ~~~~~~~~~~v~~~~g~~-~~~--~-~~~-~~v~~~~------g~-------~~~~~~d~lviATGs~p~ 150 (461)
T PRK05249 99 VRRGQYERNRVDLIQGRA-RFV--D-PHT-VEVECPD------GE-------VETLTADKIVIATGSRPY 150 (461)
T ss_pred HHHHHHHHCCCEEEEEEE-EEe--c-CCE-EEEEeCC------Cc-------eEEEEcCEEEEcCCCCCC
Confidence 455667788999998853 222 2 233 2344432 11 137999999999998754
No 293
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=86.16 E-value=4.8 Score=31.87 Aligned_cols=59 Identities=17% Similarity=0.142 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487 20 VVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL 93 (101)
Q Consensus 20 ~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l 93 (101)
+.+.+.+..++. +++++++.+.++..+ ++ .+|++.. .+++ +.++.+|.||+|.|.....
T Consensus 212 ~~~~~~~~l~~~-I~i~~~~~v~~i~~~-~~--~~v~~~~----~~~~-------~~~i~~D~vi~a~G~~p~~ 270 (460)
T PRK06292 212 VSKQAQKILSKE-FKIKLGAKVTSVEKS-GD--EKVEELE----KGGK-------TETIEADYVLVATGRRPNT 270 (460)
T ss_pred HHHHHHHHHhhc-cEEEcCCEEEEEEEc-CC--ceEEEEE----cCCc-------eEEEEeCEEEEccCCccCC
Confidence 455666677788 999999999999764 33 2233211 1111 2579999999999986554
No 294
>PLN02507 glutathione reductase
Probab=85.94 E-value=4.6 Score=32.86 Aligned_cols=50 Identities=22% Similarity=0.335 Sum_probs=30.4
Q ss_pred HHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCch
Q psy9487 25 GEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH 92 (101)
Q Consensus 25 ~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~ 92 (101)
....++.|++++.+ .+..+ + .. -+.|...+ |+ ...+.+|.+|+|+|+...
T Consensus 131 ~~~l~~~gV~~i~g-~a~~v--d-~~-~v~V~~~~------g~-------~~~~~~d~LIIATGs~p~ 180 (499)
T PLN02507 131 KRLLANAGVKLYEG-EGKIV--G-PN-EVEVTQLD------GT-------KLRYTAKHILIATGSRAQ 180 (499)
T ss_pred HHHHHhCCcEEEEE-EEEEe--c-CC-EEEEEeCC------Cc-------EEEEEcCEEEEecCCCCC
Confidence 34456689999987 34333 1 22 23344432 21 136899999999998653
No 295
>PLN02568 polyamine oxidase
Probab=85.57 E-value=3.4 Score=34.18 Aligned_cols=49 Identities=20% Similarity=0.238 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEee
Q psy9487 20 VVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAE 87 (101)
Q Consensus 20 ~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~ 87 (101)
|.+.|++... +-.|+++++|+.|.++ ++.+ .|.+.+ |.++.|+.||++.
T Consensus 244 Li~~La~~L~--~~~I~ln~~V~~I~~~-~~~v-~V~~~d---------------G~~~~aD~VIvTv 292 (539)
T PLN02568 244 VIEALASVLP--PGTIQLGRKVTRIEWQ-DEPV-KLHFAD---------------GSTMTADHVIVTV 292 (539)
T ss_pred HHHHHHhhCC--CCEEEeCCeEEEEEEe-CCeE-EEEEcC---------------CCEEEcCEEEEcC
Confidence 4455544432 3469999999999986 4433 355544 4579999999984
No 296
>PRK06370 mercuric reductase; Validated
Probab=85.50 E-value=2.8 Score=33.33 Aligned_cols=48 Identities=19% Similarity=0.329 Sum_probs=31.3
Q ss_pred HHHHHHHHC-CCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487 23 WLGEQAEAM-GVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL 93 (101)
Q Consensus 23 ~l~~~A~~~-Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l 93 (101)
++.+..++. |++++.++.+. .+ +.+ |.+. +.++.++.+|+|+|+....
T Consensus 99 ~~~~~~~~~~gv~v~~g~~~~---~~-~~~---v~v~----------------~~~~~~d~lViATGs~p~~ 147 (463)
T PRK06370 99 GSEQWLRGLEGVDVFRGHARF---ES-PNT---VRVG----------------GETLRAKRIFINTGARAAI 147 (463)
T ss_pred hHHHHHhcCCCcEEEEEEEEE---cc-CCE---EEEC----------------cEEEEeCEEEEcCCCCCCC
Confidence 444555666 99999987642 22 222 2222 2579999999999987643
No 297
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=85.44 E-value=5.7 Score=33.09 Aligned_cols=57 Identities=14% Similarity=0.246 Sum_probs=37.8
Q ss_pred HHHHHHHCCCEEecCCceeEEEEecC---CcEEEEEeccccccCCCCCCcCCCCCeEEEc-cEEEEeecCC
Q psy9487 24 LGEQAEAMGVEIYPGIPASEVLYHGD---GSVKGIATGDVGIAKDGSPKDTFARGMELHA-KVTIFAEGCH 90 (101)
Q Consensus 24 l~~~A~~~Gv~i~~gt~v~~i~~~~~---g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A-~~VI~A~G~~ 90 (101)
|.+..++.||++..+|.|++|.++.+ ..+.++.+.. +|.+. ...+.. |+|++..|+-
T Consensus 213 l~~~L~~~GV~F~~~t~V~di~~~~~~~~~~~~~i~~~~-----~g~~~-----~i~l~~~DlV~vT~GS~ 273 (500)
T PF06100_consen 213 LIRYLKSQGVDFRFNTKVTDIDFDITGDKKTATRIHIEQ-----DGKEE-----TIDLGPDDLVFVTNGSM 273 (500)
T ss_pred HHHHHHHCCCEEECCCEEEEEEEEccCCCeeEEEEEEEc-----CCCee-----EEEeCCCCEEEEECCcc
Confidence 67788999999999999999998632 2455565543 33220 123333 7888877753
No 298
>KOG1399|consensus
Probab=85.36 E-value=5.1 Score=32.70 Aligned_cols=77 Identities=17% Similarity=0.118 Sum_probs=57.2
Q ss_pred CCCCCCCC-CcEEEEhHHHHHHHHHHHHHCCC--EEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEE
Q psy9487 3 FGMPMNNH-GNYVVRLGHVVKWLGEQAEAMGV--EIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELH 79 (101)
Q Consensus 3 ~~~~~~~~-~~~~v~r~~~d~~l~~~A~~~Gv--~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~ 79 (101)
+.+||.++ ..+..++..+..+|..-|++-+. .|..+++|..+... +...+.|.+.+... . ..+.-
T Consensus 74 ~dfpf~~~~~~~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~-~~gkW~V~~~~~~~---~--------~~~~i 141 (448)
T KOG1399|consen 74 SDFPFPERDPRYFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSI-DKGKWRVTTKDNGT---Q--------IEEEI 141 (448)
T ss_pred CCCCCcccCcccCCCHHHHHHHHHHHHHhcChhhheEecccEEEEeec-cCCceeEEEecCCc---c--------eeEEE
Confidence 45777777 57889999999999999999885 78888888888764 31345577655211 0 14677
Q ss_pred ccEEEEeecCCc
Q psy9487 80 AKVTIFAEGCHG 91 (101)
Q Consensus 80 A~~VI~A~G~~s 91 (101)
+|.|++|+|-+.
T Consensus 142 fd~VvVctGh~~ 153 (448)
T KOG1399|consen 142 FDAVVVCTGHYV 153 (448)
T ss_pred eeEEEEcccCcC
Confidence 799999999873
No 299
>PLN02546 glutathione reductase
Probab=85.06 E-value=3.2 Score=34.53 Aligned_cols=50 Identities=18% Similarity=0.217 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCch
Q psy9487 20 VVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH 92 (101)
Q Consensus 20 ~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~ 92 (101)
+..++.+..++.||+++.+. ++.+ + ... |.+ + |.++.+|.+|+|+|+...
T Consensus 180 l~~~~~~~l~~~gV~~i~G~-a~~v--d-~~~---V~v-~---------------G~~~~~D~LVIATGs~p~ 229 (558)
T PLN02546 180 LTGIYKNILKNAGVTLIEGR-GKIV--D-PHT---VDV-D---------------GKLYTARNILIAVGGRPF 229 (558)
T ss_pred HHHHHHHHHHhCCcEEEEeE-EEEc--c-CCE---EEE-C---------------CEEEECCEEEEeCCCCCC
Confidence 44566777888999999873 3333 1 222 333 2 367999999999998764
No 300
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=84.62 E-value=3.4 Score=33.76 Aligned_cols=50 Identities=18% Similarity=0.208 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEe
Q psy9487 20 VVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFA 86 (101)
Q Consensus 20 ~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A 86 (101)
+.+.+-.-+++..++|+++++|++|..+ ... .++..++ |.++.||.||++
T Consensus 214 ~~~l~~al~~~l~~~i~~~~~V~~i~~~-~~~-~~~~~~~---------------g~~~~~D~VI~t 263 (444)
T COG1232 214 LQSLIEALAEKLEAKIRTGTEVTKIDKK-GAG-KTIVDVG---------------GEKITADGVIST 263 (444)
T ss_pred HHHHHHHHHHHhhhceeecceeeEEEEc-CCc-cEEEEcC---------------CceEEcceEEEc
Confidence 3444333444555669999999999985 222 3344433 578999999998
No 301
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=83.12 E-value=5.2 Score=35.99 Aligned_cols=67 Identities=19% Similarity=0.073 Sum_probs=39.2
Q ss_pred HHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCC-CCCeEEEccEEEEeecCCch
Q psy9487 24 LGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTF-ARGMELHAKVTIFAEGCHGH 92 (101)
Q Consensus 24 l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~-~~g~~i~A~~VI~A~G~~s~ 92 (101)
..++|.+.||++++.+.+.++.- ++++......-...+.+|...+.. ..+.++.+|.||.|.|....
T Consensus 713 Ele~AleeGVe~~~~~~p~~I~~--dG~l~~~~~~lg~~d~~Gr~~~v~tg~~~~I~aD~VIvAIG~~Pn 780 (1019)
T PRK09853 713 EYEEALEDGVEFKELLNPESFDA--DGTLTCRVMKLGEPDESGRRRPVETGETVTLEADTVITAIGEQVD 780 (1019)
T ss_pred HHHHHHHcCCEEEeCCceEEEEc--CCcEEEEEEEeecccCCCceEEeeCCCeEEEEeCEEEECCCCcCC
Confidence 35667788999999999888853 455442221100001112111000 12468999999999998654
No 302
>KOG3855|consensus
Probab=82.12 E-value=5.9 Score=32.68 Aligned_cols=69 Identities=16% Similarity=0.198 Sum_probs=49.5
Q ss_pred cEEEEhHHHHHHHH---HHHHHCCCEEecCCceeEEEE------ecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccE
Q psy9487 12 NYVVRLGHVVKWLG---EQAEAMGVEIYPGIPASEVLY------HGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKV 82 (101)
Q Consensus 12 ~~~v~r~~~d~~l~---~~A~~~Gv~i~~gt~v~~i~~------~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~ 82 (101)
++++....+-..|+ -.++...++++..+.+.++.+ ++++.+.-+.+.+ |..+..++
T Consensus 144 a~iien~nIq~sL~~s~~~s~~~nv~vi~~~k~~~~~~~~~l~~~~n~~~~~i~l~d---------------g~~~~~~L 208 (481)
T KOG3855|consen 144 AFIIENDNIQCSLYNSQLDSESDNVTVINMAKVIDCTIPEYLIKNDNGMWFHITLTD---------------GINFATDL 208 (481)
T ss_pred eeeeehhHHHHHHHHHHHhhhcCceeeecccceeeeccccccCCCCCcceEEEEecc---------------Cceeeece
Confidence 45555544444444 344557799999998887755 2356677777766 67899999
Q ss_pred EEEeecCCchhhH
Q psy9487 83 TIFAEGCHGHLTK 95 (101)
Q Consensus 83 VI~A~G~~s~l~~ 95 (101)
.|.|+|.+|.+.+
T Consensus 209 LigAdg~Ns~vR~ 221 (481)
T KOG3855|consen 209 LIGADGFNSVVRK 221 (481)
T ss_pred eeccccccchhhh
Confidence 9999999999854
No 303
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=81.16 E-value=5.8 Score=32.49 Aligned_cols=71 Identities=11% Similarity=0.143 Sum_probs=49.5
Q ss_pred CCCcEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEE--EEeccccccCCCCCCcCCCCCeEEEccEEEEe
Q psy9487 9 NHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKG--IATGDVGIAKDGSPKDTFARGMELHAKVTIFA 86 (101)
Q Consensus 9 ~~~~~~v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~G--V~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A 86 (101)
+.+.+.+.|..+++.+.=.|..+ -.++.+++|++|-.-+.+...- |++.+ +..++|+.+|++
T Consensus 89 ~~e~f~i~R~Ey~dY~~Waa~~l-~~~rfg~~V~~i~~~~~d~~~~~~~~t~~---------------~~~y~ar~lVlg 152 (436)
T COG3486 89 NYETFHIPRREYNDYCQWAASQL-PSLRFGEEVTDISSLDGDAVVRLFVVTAN---------------GTVYRARNLVLG 152 (436)
T ss_pred hhhcccccHHHHHHHHHHHHhhC-CccccCCeeccccccCCcceeEEEEEcCC---------------CcEEEeeeEEEc
Confidence 45678899999999855444555 8899999999772211222332 44433 358999999999
Q ss_pred ecCCchhhH
Q psy9487 87 EGCHGHLTK 95 (101)
Q Consensus 87 ~G~~s~l~~ 95 (101)
.|....+-.
T Consensus 153 ~G~~P~IP~ 161 (436)
T COG3486 153 VGTQPYIPP 161 (436)
T ss_pred cCCCcCCCh
Confidence 998877643
No 304
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=80.51 E-value=7.8 Score=30.71 Aligned_cols=50 Identities=22% Similarity=0.211 Sum_probs=31.6
Q ss_pred HHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCch
Q psy9487 24 LGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH 92 (101)
Q Consensus 24 l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~ 92 (101)
+....++.|++++.++. +. .+ ...+.|...+ + +.++++|.+|+|+|+...
T Consensus 98 ~~~~~~~~gv~~~~g~~-~~--~~--~~~~~v~~~~------~--------~~~~~~d~lViAtGs~p~ 147 (462)
T PRK06416 98 VEGLLKKNKVDIIRGEA-KL--VD--PNTVRVMTED------G--------EQTYTAKNIILATGSRPR 147 (462)
T ss_pred HHHHHHhCCCEEEEEEE-EE--cc--CCEEEEecCC------C--------cEEEEeCEEEEeCCCCCC
Confidence 44566778999998853 22 22 2223343211 1 257999999999998753
No 305
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=79.99 E-value=3.6 Score=35.92 Aligned_cols=50 Identities=18% Similarity=0.252 Sum_probs=39.0
Q ss_pred HHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchhh
Q psy9487 26 EQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLT 94 (101)
Q Consensus 26 ~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l~ 94 (101)
+.+++.|+.++++.+|+.|-.+ + + .|.+.. |.++.-|.+|+|+|+...+-
T Consensus 67 dwy~~~~i~L~~~~~v~~idr~-~-k--~V~t~~---------------g~~~~YDkLilATGS~pfi~ 116 (793)
T COG1251 67 DWYEENGITLYTGEKVIQIDRA-N-K--VVTTDA---------------GRTVSYDKLIIATGSYPFIL 116 (793)
T ss_pred hhHHHcCcEEEcCCeeEEeccC-c-c--eEEccC---------------CcEeecceeEEecCcccccc
Confidence 4678999999999999999764 3 2 233433 57899999999999987763
No 306
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=79.47 E-value=9.5 Score=30.06 Aligned_cols=48 Identities=21% Similarity=0.383 Sum_probs=29.7
Q ss_pred HHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCch
Q psy9487 26 EQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH 92 (101)
Q Consensus 26 ~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~ 92 (101)
+..++.||+++.++. . . . +.+.+.|...+ + ..++.++.||+|+|+...
T Consensus 84 ~~~~~~gV~~~~g~~-~-~-~--~~~~v~v~~~~-------~-------~~~~~~d~vViATGs~~~ 131 (438)
T PRK07251 84 AMLAGSGVDLYDAEA-H-F-V--SNKVIEVQAGD-------E-------KIELTAETIVINTGAVSN 131 (438)
T ss_pred HHHHhCCCEEEEEEE-E-E-c--cCCEEEEeeCC-------C-------cEEEEcCEEEEeCCCCCC
Confidence 345678999998764 1 1 2 23333343211 0 247999999999998753
No 307
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=78.76 E-value=7.6 Score=31.73 Aligned_cols=49 Identities=18% Similarity=0.248 Sum_probs=31.0
Q ss_pred HHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487 25 GEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL 93 (101)
Q Consensus 25 ~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l 93 (101)
....++.||+++.++. .+. +...+.|...+ ..+++|+.+|+|+|+....
T Consensus 101 ~~l~~~~~V~vi~G~a----~f~-~~~~v~V~~~~---------------~~~~~a~~iiIATGS~p~~ 149 (454)
T COG1249 101 EGLLKKNGVDVIRGEA----RFV-DPHTVEVTGED---------------KETITADNIIIATGSRPRI 149 (454)
T ss_pred HHHHhhCCCEEEEEEE----EEC-CCCEEEEcCCC---------------ceEEEeCEEEEcCCCCCcC
Confidence 3344556999998864 232 22223233210 2689999999999998754
No 308
>PLN02529 lysine-specific histone demethylase 1
Probab=78.75 E-value=6.1 Score=34.28 Aligned_cols=37 Identities=22% Similarity=0.475 Sum_probs=27.5
Q ss_pred CCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEe
Q psy9487 32 GVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFA 86 (101)
Q Consensus 32 Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A 86 (101)
++.|+++++|+.|.++ ++.|. |.+. +..+.||.||++
T Consensus 366 ~L~IrLnt~V~~I~~~-~dGVt-V~t~----------------~~~~~AD~VIVT 402 (738)
T PLN02529 366 GVPIFYGKTVDTIKYG-NDGVE-VIAG----------------SQVFQADMVLCT 402 (738)
T ss_pred cCCEEcCCceeEEEEc-CCeEE-EEEC----------------CEEEEcCEEEEC
Confidence 5679999999999996 33332 4332 257999999998
No 309
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=78.24 E-value=10 Score=30.39 Aligned_cols=46 Identities=28% Similarity=0.332 Sum_probs=27.8
Q ss_pred HHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCc
Q psy9487 28 AEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG 91 (101)
Q Consensus 28 A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s 91 (101)
.++.|++++.+.. .++++.++. |...+ |+ ..++.+|.+|+|+|+..
T Consensus 103 ~~~~~v~~~~g~a----~~~~~~~v~-v~~~~------g~-------~~~~~~d~lVIATGs~p 148 (466)
T PRK06115 103 FRKNKVDWIKGWG----RLDGVGKVV-VKAED------GS-------ETQLEAKDIVIATGSEP 148 (466)
T ss_pred HHhCCCEEEEEEE----EEccCCEEE-EEcCC------Cc-------eEEEEeCEEEEeCCCCC
Confidence 4456888887752 232233332 44322 11 14699999999999865
No 310
>PTZ00058 glutathione reductase; Provisional
Probab=77.53 E-value=9.6 Score=31.81 Aligned_cols=18 Identities=22% Similarity=0.255 Sum_probs=15.2
Q ss_pred CeEEEccEEEEeecCCch
Q psy9487 75 GMELHAKVTIFAEGCHGH 92 (101)
Q Consensus 75 g~~i~A~~VI~A~G~~s~ 92 (101)
|.++.++.+|+|+|+...
T Consensus 198 g~~i~ad~lVIATGS~P~ 215 (561)
T PTZ00058 198 GQVIEGKNILIAVGNKPI 215 (561)
T ss_pred CcEEECCEEEEecCCCCC
Confidence 357999999999998764
No 311
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=77.06 E-value=11 Score=30.52 Aligned_cols=51 Identities=14% Similarity=0.032 Sum_probs=30.9
Q ss_pred HHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCch
Q psy9487 24 LGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH 92 (101)
Q Consensus 24 l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~ 92 (101)
+....++.||+++.+.. .+ . +...+.|... +|+ ...+++|.+|+|+|+...
T Consensus 106 ~~~~~~~~~v~~i~G~a--~f-~--~~~~v~v~~~------~g~-------~~~~~~d~lVIATGs~p~ 156 (484)
T TIGR01438 106 YRVALREKKVNYENAYA--EF-V--DKHRIKATNK------KGK-------EKIYSAERFLIATGERPR 156 (484)
T ss_pred HHHHHhhCCcEEEEEEE--EE-c--CCCEEEEecc------CCC-------ceEEEeCEEEEecCCCCC
Confidence 33456778999998754 11 1 2222223321 221 147999999999998654
No 312
>KOG1336|consensus
Probab=76.93 E-value=5.4 Score=33.06 Aligned_cols=43 Identities=21% Similarity=0.327 Sum_probs=34.5
Q ss_pred HHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecC
Q psy9487 28 AEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGC 89 (101)
Q Consensus 28 A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~ 89 (101)
-++.|+++++++.|+.+-.+ +.. |...+ |..++-+.+|+|+|+
T Consensus 137 Yke~gIe~~~~t~v~~~D~~-~K~---l~~~~---------------Ge~~kys~LilATGs 179 (478)
T KOG1336|consen 137 YKEKGIELILGTSVVKADLA-SKT---LVLGN---------------GETLKYSKLIIATGS 179 (478)
T ss_pred HhhcCceEEEcceeEEeecc-ccE---EEeCC---------------CceeecceEEEeecC
Confidence 46789999999999999874 433 44433 578999999999998
No 313
>PLN02852 ferredoxin-NADP+ reductase
Probab=75.94 E-value=19 Score=29.69 Aligned_cols=71 Identities=18% Similarity=0.164 Sum_probs=44.5
Q ss_pred HHHHHHHHHHH---------CCCEEecCCceeEEEEe--cCCcEEEEEeccccccC---CCCC--CcCCCCCeEEEccEE
Q psy9487 20 VVKWLGEQAEA---------MGVEIYPGIPASEVLYH--GDGSVKGIATGDVGIAK---DGSP--KDTFARGMELHAKVT 83 (101)
Q Consensus 20 ~d~~l~~~A~~---------~Gv~i~~gt~v~~i~~~--~~g~v~GV~~~~~g~~~---~g~~--~~~~~~g~~i~A~~V 83 (101)
....|.+.|.+ .++.|.+...-.+|+-+ ++++|.++++...-... +|.. .+.-+ ..+|.++.|
T Consensus 268 ~~~~l~~~a~~~~~~~~~~~~~v~~~f~~sP~ei~~~~~~~~~v~~l~~~~~~l~~~~~~g~~~~~~tge-~~~i~~D~V 346 (491)
T PLN02852 268 VYELLSKAAAAGKCAPSGGQRELHFVFFRNPTRFLDSGDGNGHVAGVKLERTVLEGAAGSGKQVAVGTGE-FEDLPCGLV 346 (491)
T ss_pred HHHHHHHHHhhcccccCCCCceEEEEccCCCeEEEccCCCCCcEEEEEEEEeecCCCcccCCcccCCCCC-EEEEECCEE
Confidence 45555555434 57999999988888742 23689999886422100 1211 11111 247999999
Q ss_pred EEeecCCc
Q psy9487 84 IFAEGCHG 91 (101)
Q Consensus 84 I~A~G~~s 91 (101)
|.|-|..+
T Consensus 347 i~aIG~~~ 354 (491)
T PLN02852 347 LKSIGYKS 354 (491)
T ss_pred EEeecCCC
Confidence 99999874
No 314
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=75.87 E-value=3.3 Score=33.07 Aligned_cols=42 Identities=21% Similarity=0.404 Sum_probs=27.9
Q ss_pred HCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487 30 AMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL 93 (101)
Q Consensus 30 ~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l 93 (101)
+.|++++.++.+.. + +.+ |.+.+ |.++.++.+|+|+|+...+
T Consensus 104 ~~gv~~~~g~~~~~---~-~~~---V~~~~---------------g~~~~~d~lIiATGs~p~~ 145 (452)
T TIGR03452 104 TPNIDVYDGHARFV---G-PRT---LRTGD---------------GEEITGDQIVIAAGSRPYI 145 (452)
T ss_pred cCCeEEEEEEEEEe---c-CCE---EEECC---------------CcEEEeCEEEEEECCCCCC
Confidence 37899998865332 2 222 33332 3579999999999987643
No 315
>KOG2960|consensus
Probab=74.76 E-value=16 Score=28.13 Aligned_cols=91 Identities=15% Similarity=0.274 Sum_probs=57.6
Q ss_pred CCCCCCCCCcEEEEhH--HHHHHHHHHH-HHCCCEEecCCceeEEEEecCC----cEEEEEeccccccCCCCCCcCCCCC
Q psy9487 3 FGMPMNNHGNYVVRLG--HVVKWLGEQA-EAMGVEIYPGIPASEVLYHGDG----SVKGIATGDVGIAKDGSPKDTFARG 75 (101)
Q Consensus 3 ~~~~~~~~~~~~v~r~--~~d~~l~~~A-~~~Gv~i~~gt~v~~i~~~~~g----~v~GV~~~~~g~~~~g~~~~~~~~g 75 (101)
.|-|.+.+|-|++-.. -|...+..+. .--.|+++--+.|.+++..++. ||.||.++=.=.-.+ -...--++-
T Consensus 140 igvpYedegdYVVVKHAALFtSTvmsk~LalPNVKLFNAtavEDLivk~g~~g~~rvaGVVTNWtLV~qn-HgtQsCMDP 218 (328)
T KOG2960|consen 140 IGVPYEDEGDYVVVKHAALFTSTVMSKVLALPNVKLFNATAVEDLIVKPGEKGEVRVAGVVTNWTLVTQN-HGTQSCMDP 218 (328)
T ss_pred hCCCcccCCCEEEEeeHHHHHHHHHHHHhcCCcceeechhhhhhhhcccCcCCceEEEEEEeeeEEeeec-cCccccCCC
Confidence 3677888888887553 4555444444 4467999999999999875332 788988761100010 000111222
Q ss_pred eEEEccEEEEeecCCchhh
Q psy9487 76 MELHAKVTIFAEGCHGHLT 94 (101)
Q Consensus 76 ~~i~A~~VI~A~G~~s~l~ 94 (101)
-.|.|.+|+-++|-.++.+
T Consensus 219 Nviea~~vvS~tGHDGPFG 237 (328)
T KOG2960|consen 219 NVIEAAVVVSTTGHDGPFG 237 (328)
T ss_pred CeeeEEEEEEccCCCCCch
Confidence 4699999999999888874
No 316
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=73.36 E-value=20 Score=28.29 Aligned_cols=16 Identities=19% Similarity=0.389 Sum_probs=13.9
Q ss_pred EEEccEEEEeecCCch
Q psy9487 77 ELHAKVTIFAEGCHGH 92 (101)
Q Consensus 77 ~i~A~~VI~A~G~~s~ 92 (101)
++.++.+|+|+|+...
T Consensus 117 ~~~~d~lviATGs~p~ 132 (441)
T PRK08010 117 EIHGEKIFINTGAQTV 132 (441)
T ss_pred EEEeCEEEEcCCCcCC
Confidence 6999999999998653
No 317
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=73.11 E-value=13 Score=28.63 Aligned_cols=68 Identities=24% Similarity=0.252 Sum_probs=50.9
Q ss_pred cEEEEhHHHHH--HHHHHHHHC-CCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeec
Q psy9487 12 NYVVRLGHVVK--WLGEQAEAM-GVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEG 88 (101)
Q Consensus 12 ~~~v~r~~~d~--~l~~~A~~~-Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G 88 (101)
..+.+|..|.. ++.+++++. .+++++++++.++.=+ + +.+|+..+. + ++. .++..+-|.++-|
T Consensus 170 tlv~r~~~~ra~~~~~~~l~~~~~i~~~~~~~i~ei~G~--~-v~~v~l~~~---~-~~~-------~~~~~~gvf~~iG 235 (305)
T COG0492 170 TLVHRRDEFRAEEILVERLKKNVKIEVLTNTVVKEILGD--D-VEGVVLKNV---K-GEE-------KELPVDGVFIAIG 235 (305)
T ss_pred EEEecCcccCcCHHHHHHHHhcCCeEEEeCCceeEEecC--c-cceEEEEec---C-Cce-------EEEEeceEEEecC
Confidence 45566666654 899999988 8999999999999753 3 888888752 1 332 5788899999888
Q ss_pred CCchh
Q psy9487 89 CHGHL 93 (101)
Q Consensus 89 ~~s~l 93 (101)
.....
T Consensus 236 ~~p~~ 240 (305)
T COG0492 236 HLPNT 240 (305)
T ss_pred CCCch
Confidence 76553
No 318
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=73.03 E-value=13 Score=33.39 Aligned_cols=65 Identities=18% Similarity=0.085 Sum_probs=36.8
Q ss_pred HHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCC-CCeEEEccEEEEeecCCc
Q psy9487 24 LGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFA-RGMELHAKVTIFAEGCHG 91 (101)
Q Consensus 24 l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~-~g~~i~A~~VI~A~G~~s 91 (101)
..+++.+.||++++.+.+.++. ++++......-...+.+|...+... ...++.+|.||.|.|...
T Consensus 711 El~~aleeGVe~~~~~~p~~I~---~g~l~v~~~~l~~~d~sGr~~~v~~Gee~~I~aD~VIvAiG~~P 776 (1012)
T TIGR03315 711 ELEEALEDGVDFKELLSPESFE---DGTLTCEVMKLGEPDASGRRRPVGTGETVDLPADTVIAAVGEQV 776 (1012)
T ss_pred HHHHHHHcCCEEEeCCceEEEE---CCeEEEEEEEeecccCCCceeeecCCCeEEEEeCEEEEecCCcC
Confidence 3566777899999999888875 3444332221000011121111000 124799999999999764
No 319
>PRK07846 mycothione reductase; Reviewed
Probab=72.66 E-value=7.5 Score=31.11 Aligned_cols=43 Identities=23% Similarity=0.417 Sum_probs=27.8
Q ss_pred HHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCch
Q psy9487 28 AEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH 92 (101)
Q Consensus 28 A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~ 92 (101)
.+..|++++.+.... .+ +.. |++.+ |.+++++.+|+|+|+...
T Consensus 99 ~~~~~v~~~~g~a~~---~~-~~~---V~v~~---------------g~~~~~d~lViATGs~p~ 141 (451)
T PRK07846 99 RDTPNIDVYRGHARF---IG-PKT---LRTGD---------------GEEITADQVVIAAGSRPV 141 (451)
T ss_pred hhhCCcEEEEEEEEE---ec-CCE---EEECC---------------CCEEEeCEEEEcCCCCCC
Confidence 455788888875432 12 332 33333 357999999999998754
No 320
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=72.59 E-value=18 Score=28.78 Aligned_cols=17 Identities=24% Similarity=0.214 Sum_probs=14.6
Q ss_pred eEEEccEEEEeecCCch
Q psy9487 76 MELHAKVTIFAEGCHGH 92 (101)
Q Consensus 76 ~~i~A~~VI~A~G~~s~ 92 (101)
.++++|.+|+|+|+...
T Consensus 129 ~~~~~d~lviATGs~p~ 145 (458)
T PRK06912 129 EVVDAEQFIIAAGSEPT 145 (458)
T ss_pred EEEECCEEEEeCCCCCC
Confidence 47999999999998753
No 321
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=72.25 E-value=19 Score=28.42 Aligned_cols=17 Identities=35% Similarity=0.354 Sum_probs=14.4
Q ss_pred eEEEccEEEEeecCCch
Q psy9487 76 MELHAKVTIFAEGCHGH 92 (101)
Q Consensus 76 ~~i~A~~VI~A~G~~s~ 92 (101)
.+++++.+|+|+|+...
T Consensus 128 ~~~~~d~lVlAtG~~p~ 144 (461)
T TIGR01350 128 ETLTAKNIIIATGSRPR 144 (461)
T ss_pred EEEEeCEEEEcCCCCCC
Confidence 47999999999998653
No 322
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=72.03 E-value=11 Score=29.72 Aligned_cols=58 Identities=5% Similarity=0.017 Sum_probs=35.1
Q ss_pred HHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCc
Q psy9487 24 LGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG 91 (101)
Q Consensus 24 l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s 91 (101)
+.+.++..|++++.+ +|++|..+ +.. +-+.+.+.+...+ ..+.++.+|.+|+|+|+..
T Consensus 68 ~~~~~~~~~~~~i~~-~V~~Id~~-~~~-v~~~~~~~~~~~~-------~~g~~i~yD~LViAtGs~~ 125 (424)
T PTZ00318 68 VRPALAKLPNRYLRA-VVYDVDFE-EKR-VKCGVVSKSNNAN-------VNTFSVPYDKLVVAHGARP 125 (424)
T ss_pred HHHHhccCCeEEEEE-EEEEEEcC-CCE-EEEeccccccccc-------CCceEecCCEEEECCCccc
Confidence 455566778888775 88888764 333 3232211000000 0146899999999999975
No 323
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=71.87 E-value=19 Score=31.74 Aligned_cols=48 Identities=17% Similarity=0.272 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEee
Q psy9487 20 VVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAE 87 (101)
Q Consensus 20 ~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~ 87 (101)
+.+.+-.-|+.+ .|+++++|+.|.++ ++.|. | +.+ |.++.||.||++.
T Consensus 436 ~~~Li~aLa~~L--~I~ln~~V~~I~~~-~dgV~-V-~~~---------------G~~~~AD~VIvTv 483 (808)
T PLN02328 436 NDTFVRELAKDL--PIFYERTVESIRYG-VDGVI-V-YAG---------------GQEFHGDMVLCTV 483 (808)
T ss_pred HHHHHHHHHhhC--CcccCCeeEEEEEc-CCeEE-E-EeC---------------CeEEEcCEEEECC
Confidence 344333333444 48999999999986 33332 2 222 4679999999984
No 324
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=71.18 E-value=22 Score=31.59 Aligned_cols=64 Identities=22% Similarity=0.261 Sum_probs=36.0
Q ss_pred HHHHHHHHCC-CEEecCCceeEEEEecCCcEEEEEeccccc--cCCCCCCcCCCCCeEEEccEEEEeecCCc
Q psy9487 23 WLGEQAEAMG-VEIYPGIPASEVLYHGDGSVKGIATGDVGI--AKDGSPKDTFARGMELHAKVTIFAEGCHG 91 (101)
Q Consensus 23 ~l~~~A~~~G-v~i~~gt~v~~i~~~~~g~v~GV~~~~~g~--~~~g~~~~~~~~g~~i~A~~VI~A~G~~s 91 (101)
-+.+++++.+ +++++++.|..+.- ++.+.-+...+... ..++.+. +.-.+++++.||+|+|+..
T Consensus 220 ~~~~~l~~~~~v~v~~~t~V~~i~~--~~~v~~v~~~~~~~~~~~~~~~~---~~~~~i~a~~VILATGa~~ 286 (985)
T TIGR01372 220 ATVAELTAMPEVTLLPRTTAFGYYD--HNTVGALERVTDHLDAPPKGVPR---ERLWRIRAKRVVLATGAHE 286 (985)
T ss_pred HHHHHHhcCCCcEEEcCCEEEEEec--CCeEEEEEEeeeccccccCCccc---cceEEEEcCEEEEcCCCCC
Confidence 3556666664 99999999988732 34444333211000 0001000 0013699999999999853
No 325
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=70.29 E-value=7.7 Score=32.82 Aligned_cols=69 Identities=17% Similarity=0.208 Sum_probs=43.9
Q ss_pred EEEEhHHHHHH---HHHHHH-HCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeec
Q psy9487 13 YVVRLGHVVKW---LGEQAE-AMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEG 88 (101)
Q Consensus 13 ~~v~r~~~d~~---l~~~A~-~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G 88 (101)
|.++...|..+ ++.+.+ +.|+.++-| .+.+|..+.+++ ..|+..|. -.|++ .++.+|+||+|+|
T Consensus 406 ~YmDiRafG~~yEefY~~~Q~~~gV~fIRG-rvaei~e~p~~~-l~V~~EdT---l~g~~-------~e~~~DLVVLa~G 473 (622)
T COG1148 406 YYMDIRAFGKDYEEFYVRSQEDYGVRFIRG-RVAEIAEFPKKK-LIVRVEDT---LTGEV-------KEIEADLVVLATG 473 (622)
T ss_pred EEEEeeccCccHHHHHHhhhhhhchhhhcC-ChHHheeCCCCe-eEEEEEec---cCccc-------eecccceEEEeec
Confidence 44455555422 355565 899999998 555555444555 34666551 23444 6899999999999
Q ss_pred CCchh
Q psy9487 89 CHGHL 93 (101)
Q Consensus 89 ~~s~l 93 (101)
-..+-
T Consensus 474 mep~~ 478 (622)
T COG1148 474 MEPSE 478 (622)
T ss_pred cccCc
Confidence 76533
No 326
>PLN03000 amine oxidase
Probab=70.20 E-value=25 Score=31.31 Aligned_cols=36 Identities=14% Similarity=0.221 Sum_probs=26.4
Q ss_pred EEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEee
Q psy9487 34 EIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAE 87 (101)
Q Consensus 34 ~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~ 87 (101)
.|+++++|+.|.++ ++.|. |.+. +..+.||.||+|.
T Consensus 392 ~I~Ln~~Vt~I~~~-~dgV~-V~~~----------------~~~~~AD~VIvTV 427 (881)
T PLN03000 392 PILYEKTVQTIRYG-SNGVK-VIAG----------------NQVYEGDMVLCTV 427 (881)
T ss_pred CcccCCcEEEEEEC-CCeEE-EEEC----------------CcEEEeceEEEcC
Confidence 59999999999986 43332 4432 1479999999984
No 327
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=69.79 E-value=11 Score=30.86 Aligned_cols=59 Identities=19% Similarity=0.223 Sum_probs=48.0
Q ss_pred hHHHHHHHHHHHHHCCCEEecCCceeEEEEe-cCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCC
Q psy9487 17 LGHVVKWLGEQAEAMGVEIYPGIPASEVLYH-GDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH 90 (101)
Q Consensus 17 r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~-~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~ 90 (101)
-.+|...|-++.++.-|++...-.++++.-- +.+....|++.+ |-.++++.||+|+|+.
T Consensus 265 Gpkl~~ale~Hv~~Y~vDimn~qra~~l~~a~~~~~l~ev~l~n---------------GavLkaktvIlstGAr 324 (520)
T COG3634 265 GPKLAAALEAHVKQYDVDVMNLQRASKLEPAAVEGGLIEVELAN---------------GAVLKARTVILATGAR 324 (520)
T ss_pred chHHHHHHHHHHhhcCchhhhhhhhhcceecCCCCccEEEEecC---------------CceeccceEEEecCcc
Confidence 3567888899999999999998888888652 235678888876 6789999999999974
No 328
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=69.73 E-value=27 Score=28.47 Aligned_cols=51 Identities=18% Similarity=0.193 Sum_probs=29.7
Q ss_pred HHH-CCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCch
Q psy9487 28 AEA-MGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH 92 (101)
Q Consensus 28 A~~-~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~ 92 (101)
.++ .|++++.|.. ... +...+.|..... .++.. ..+++++.+|+|+|+...
T Consensus 113 l~~~~gv~~i~G~a---~f~--~~~~v~V~~~~~---~~~~~------~~~~~~d~lIIATGs~p~ 164 (486)
T TIGR01423 113 FADTEGLTFFLGWG---ALE--DKNVVLVRESAD---PKSAV------KERLQAEHILLATGSWPQ 164 (486)
T ss_pred hhcCCCeEEEEEEE---EEc--cCCEEEEeeccC---CCCCc------ceEEECCEEEEecCCCCC
Confidence 445 4999998863 222 234344543210 01110 247999999999999753
No 329
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=69.65 E-value=12 Score=29.72 Aligned_cols=46 Identities=20% Similarity=0.219 Sum_probs=28.9
Q ss_pred HHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCch
Q psy9487 26 EQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH 92 (101)
Q Consensus 26 ~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~ 92 (101)
+.+++.|++++.++.. +. +.+.+ .+.+ | ...++++.+|+|+|+...
T Consensus 96 ~~l~~~gv~~~~g~~~----~~-~~~~v--~v~~------g--------~~~~~~~~lIiATGs~p~ 141 (463)
T TIGR02053 96 DVLSSYGVDYLRGRAR----FK-DPKTV--KVDL------G--------REVRGAKRFLIATGARPA 141 (463)
T ss_pred HHHHhCCcEEEEEEEE----Ec-cCCEE--EEcC------C--------eEEEEeCEEEEcCCCCCC
Confidence 4567789999987532 21 23322 3322 1 146899999999998754
No 330
>PLN02976 amine oxidase
Probab=68.71 E-value=21 Score=33.94 Aligned_cols=39 Identities=15% Similarity=0.272 Sum_probs=27.4
Q ss_pred CEEecCCceeEEEEecC--------CcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEe
Q psy9487 33 VEIYPGIPASEVLYHGD--------GSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFA 86 (101)
Q Consensus 33 v~i~~gt~v~~i~~~~~--------g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A 86 (101)
..|+++++|+.|.+..+ +.-+.|.+.+ |..+.|+.||++
T Consensus 946 L~IrLNtpVtrId~s~~d~~~~~s~~dGVtVtTsD---------------GetftADaVIVT 992 (1713)
T PLN02976 946 LDIHLNHVVTDVSYGSKDAGASGSSRKKVKVSTSN---------------GSEFLGDAVLIT 992 (1713)
T ss_pred CCeecCCeEEEEEecCCcccccccCCCcEEEEECC---------------CCEEEeceEEEe
Confidence 45999999999998411 1223355543 467999999998
No 331
>PRK14727 putative mercuric reductase; Provisional
Probab=68.32 E-value=17 Score=29.15 Aligned_cols=43 Identities=21% Similarity=0.329 Sum_probs=27.2
Q ss_pred CCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCch
Q psy9487 32 GVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH 92 (101)
Q Consensus 32 Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~ 92 (101)
|++++.|.. .+. +...+.|+..+ |+ ..++.++.+|+|+|+...
T Consensus 121 ~v~~i~G~a----~f~-~~~~v~v~~~~------g~-------~~~~~~d~lViATGs~p~ 163 (479)
T PRK14727 121 ALTLLKGYA----RFK-DGNTLVVRLHD------GG-------ERVLAADRCLIATGSTPT 163 (479)
T ss_pred CeEEEEEEE----EEe-cCCEEEEEeCC------Cc-------eEEEEeCEEEEecCCCCC
Confidence 888888752 332 33334465433 11 146999999999998654
No 332
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=66.32 E-value=6.7 Score=31.26 Aligned_cols=46 Identities=17% Similarity=0.216 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCC
Q psy9487 19 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH 90 (101)
Q Consensus 19 ~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~ 90 (101)
.+..++.+..++.|+++++++.+... +.+.+ ..+.+|.||+|+|++
T Consensus 191 ~~~~~~~~~l~~~gv~~~~~~~v~~~----------v~~~~----------------~~~~~d~vvlAtGa~ 236 (457)
T PRK11749 191 DIVDREVERLLKLGVEIRTNTEVGRD----------ITLDE----------------LRAGYDAVFIGTGAG 236 (457)
T ss_pred HHHHHHHHHHHHcCCEEEeCCEECCc----------cCHHH----------------HHhhCCEEEEccCCC
Confidence 45566678888999999998875211 12211 236789999999986
No 333
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=65.35 E-value=3.7 Score=33.57 Aligned_cols=70 Identities=26% Similarity=0.276 Sum_probs=47.9
Q ss_pred HHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccC--CC--CCCcCCCCC--eEEEccEEEEeecCCch
Q psy9487 23 WLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAK--DG--SPKDTFARG--MELHAKVTIFAEGCHGH 92 (101)
Q Consensus 23 ~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~--~g--~~~~~~~~g--~~i~A~~VI~A~G~~s~ 92 (101)
...+.|.+.|+++.+...-..++.+++|+|.++++....-.. ++ ...+.-..| ..+.||.|+.|-|-...
T Consensus 311 ~~~~~a~eeg~~~~~~~~~~~~~~~e~GrV~~~~~~~~~~~~~~~~~~r~~p~~v~gs~~~~~aD~v~~aig~~~~ 386 (457)
T COG0493 311 LEVRSAGEEGVERLPFVQPKAFIGNEGGRVTGVKFGRVEPGEYVDGWGRRGPVGVIGTEKTDAADTVILAIGFEGD 386 (457)
T ss_pred hhhhhhhhcCCcccccCCceeEeecCCCcEeeeecccccccCcccccccccCccccCceEEehHHHHHHHhccCCC
Confidence 367889999999999999899988778999999876521111 11 111111122 56888999999985444
No 334
>PTZ00052 thioredoxin reductase; Provisional
Probab=65.11 E-value=8.2 Score=31.37 Aligned_cols=17 Identities=24% Similarity=0.272 Sum_probs=15.0
Q ss_pred eEEEccEEEEeecCCch
Q psy9487 76 MELHAKVTIFAEGCHGH 92 (101)
Q Consensus 76 ~~i~A~~VI~A~G~~s~ 92 (101)
..++++.+|+|+|+...
T Consensus 141 ~~i~~d~lIIATGs~p~ 157 (499)
T PTZ00052 141 ETITAKYILIATGGRPS 157 (499)
T ss_pred eEEECCEEEEecCCCCC
Confidence 57999999999999764
No 335
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=64.80 E-value=40 Score=27.80 Aligned_cols=59 Identities=12% Similarity=0.049 Sum_probs=36.6
Q ss_pred HHHHHHHH-CCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeE--EEccE----EEEeecCCchh
Q psy9487 23 WLGEQAEA-MGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGME--LHAKV----TIFAEGCHGHL 93 (101)
Q Consensus 23 ~l~~~A~~-~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~--i~A~~----VI~A~G~~s~l 93 (101)
.+.+++.+ .|+++++++.++++.- ++++..+.+.+ ..+|+. .+ +.+|. ||+|.|.....
T Consensus 183 ~~~~~~~~~~gV~i~~~~~V~~i~~--~~~v~~v~~~~---~~~G~~-------~~~~~~~D~~~~~Vi~a~G~~Pn~ 248 (555)
T TIGR03143 183 LIAEKVKNHPKIEVKFNTELKEATG--DDGLRYAKFVN---NVTGEI-------TEYKAPKDAGTFGVFVFVGYAPSS 248 (555)
T ss_pred HHHHHHHhCCCcEEEeCCEEEEEEc--CCcEEEEEEEE---CCCCCE-------EEEeccccccceEEEEEeCCCCCh
Confidence 34455544 5999999999999863 45565555432 112321 23 33666 99999987543
No 336
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=64.27 E-value=6.6 Score=30.06 Aligned_cols=54 Identities=11% Similarity=-0.032 Sum_probs=31.4
Q ss_pred HHHHHHHCCCEEecCCceeEEEE--ecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCC
Q psy9487 24 LGEQAEAMGVEIYPGIPASEVLY--HGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH 90 (101)
Q Consensus 24 l~~~A~~~Gv~i~~gt~v~~i~~--~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~ 90 (101)
+.++..+.|++++.++.+..+.. +.+........... + +..++++.||+|+|++
T Consensus 74 ~~~~l~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~~------~-------~~~~~~d~lviAtGs~ 129 (352)
T PRK12770 74 GVKELEEAGVVFHTRTKVCCGEPLHEEEGDEFVERIVSL------E-------ELVKKYDAVLIATGTW 129 (352)
T ss_pred HHHHHHhCCeEEecCcEEeeccccccccccccccccCCH------H-------HHHhhCCEEEEEeCCC
Confidence 45677788999999987765421 10111111111110 0 1247899999999985
No 337
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=62.41 E-value=9.7 Score=30.67 Aligned_cols=45 Identities=18% Similarity=0.127 Sum_probs=30.6
Q ss_pred HHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCch
Q psy9487 22 KWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH 92 (101)
Q Consensus 22 ~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~ 92 (101)
.+..+.++++|++++.++.+..- +...+ ....+|.||+|+|++..
T Consensus 195 ~~~~~~~~~~Gv~~~~~~~v~~~----------~~~~~----------------~~~~~D~vilAtGa~~~ 239 (467)
T TIGR01318 195 SRRREIFTAMGIEFHLNCEVGRD----------ISLDD----------------LLEDYDAVFLGVGTYRS 239 (467)
T ss_pred HHHHHHHHHCCCEEECCCEeCCc----------cCHHH----------------HHhcCCEEEEEeCCCCC
Confidence 45578889999999999876321 11111 12457999999999864
No 338
>PRK14694 putative mercuric reductase; Provisional
Probab=61.85 E-value=31 Score=27.56 Aligned_cols=44 Identities=16% Similarity=0.290 Sum_probs=27.8
Q ss_pred CCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCch
Q psy9487 31 MGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH 92 (101)
Q Consensus 31 ~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~ 92 (101)
.|++++.+ .|+.+ + ... ..|.+.+ |+ ..+++++.+|+|+|+...
T Consensus 110 ~~v~~~~g-~v~~i--d-~~~-~~V~~~~------g~-------~~~~~~d~lViATGs~p~ 153 (468)
T PRK14694 110 AAITVLNG-EARFV--D-ERT-LTVTLND------GG-------EQTVHFDRAFIGTGARPA 153 (468)
T ss_pred CCeEEEEE-EEEEe--c-CCE-EEEEecC------CC-------eEEEECCEEEEeCCCCCC
Confidence 37888887 35555 2 222 3355543 11 147999999999998753
No 339
>PRK13748 putative mercuric reductase; Provisional
Probab=61.06 E-value=32 Score=27.99 Aligned_cols=17 Identities=12% Similarity=0.075 Sum_probs=14.6
Q ss_pred eEEEccEEEEeecCCch
Q psy9487 76 MELHAKVTIFAEGCHGH 92 (101)
Q Consensus 76 ~~i~A~~VI~A~G~~s~ 92 (101)
.+++++.+|+|+|+...
T Consensus 229 ~~~~~d~lviAtGs~p~ 245 (561)
T PRK13748 229 RVVAFDRCLIATGASPA 245 (561)
T ss_pred EEEEcCEEEEcCCCCCC
Confidence 37999999999998754
No 340
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=58.58 E-value=24 Score=31.95 Aligned_cols=43 Identities=16% Similarity=0.067 Sum_probs=30.0
Q ss_pred HHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCc
Q psy9487 22 KWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG 91 (101)
Q Consensus 22 ~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s 91 (101)
.+..+..++.|++|++++.+ ++..+ + ......+.||+|+|++.
T Consensus 593 ~~die~l~~~GVe~~~gt~V-di~le-----------~---------------L~~~gYDaVILATGA~~ 635 (1019)
T PRK09853 593 QHDIEFVKAHGVKFEFGCSP-DLTVE-----------Q---------------LKNEGYDYVVVAIGADK 635 (1019)
T ss_pred HHHHHHHHHcCCEEEeCcee-EEEhh-----------h---------------heeccCCEEEECcCCCC
Confidence 34467888899999999876 33331 1 12344699999999974
No 341
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=58.35 E-value=48 Score=27.40 Aligned_cols=51 Identities=14% Similarity=0.155 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEe
Q psy9487 19 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFA 86 (101)
Q Consensus 19 ~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A 86 (101)
=+|+.--.-+..+|-.|..+.+|..|..++ +. +.|.+.+ ..++.+|.+|++
T Consensus 207 Gmd~la~Afa~ql~~~I~~~~~V~rI~q~~-~g-V~Vt~~~---------------~~~~~ad~~i~t 257 (450)
T COG1231 207 GMDQLAEAFAKQLGTRILLNEPVRRIDQDG-DG-VTVTADD---------------VGQYVADYVLVT 257 (450)
T ss_pred cHHHHHHHHHHHhhceEEecCceeeEEEcC-Ce-EEEEeCC---------------cceEEecEEEEe
Confidence 345443334567899999999999998853 22 3355543 257999999998
No 342
>PRK12831 putative oxidoreductase; Provisional
Probab=57.70 E-value=9 Score=30.88 Aligned_cols=47 Identities=19% Similarity=0.179 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCC
Q psy9487 20 VVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH 90 (101)
Q Consensus 20 ~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~ 90 (101)
+..+..+.+++.|+++++++.+.. . +...+ . ...+.++.||+|+|++
T Consensus 193 ~~~~~~~~~~~~gv~i~~~~~v~~-------~---v~~~~-~-------------~~~~~~d~viiAtGa~ 239 (464)
T PRK12831 193 VVKKEIENIKKLGVKIETNVVVGK-------T---VTIDE-L-------------LEEEGFDAVFIGSGAG 239 (464)
T ss_pred HHHHHHHHHHHcCCEEEcCCEECC-------c---CCHHH-H-------------HhccCCCEEEEeCCCC
Confidence 444557888999999999985521 0 11111 0 0235689999999985
No 343
>KOG1439|consensus
Probab=57.59 E-value=40 Score=27.73 Aligned_cols=43 Identities=21% Similarity=0.340 Sum_probs=36.5
Q ss_pred hHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEecc
Q psy9487 17 LGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGD 59 (101)
Q Consensus 17 r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~ 59 (101)
.+.+-|.+++-+.=.|.++..+.++.++...+|+.++||+..+
T Consensus 231 lgEL~QgFaRlsAvyGgTYMLn~pi~ei~~~~~gk~igvk~~~ 273 (440)
T KOG1439|consen 231 LGELPQGFARLSAVYGGTYMLNKPIDEINETKNGKVIGVKSGG 273 (440)
T ss_pred cchhhHHHHHHhhccCceeecCCceeeeeccCCccEEEEecCC
Confidence 4578888888888899999999999999985578999998764
No 344
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=55.30 E-value=56 Score=27.21 Aligned_cols=70 Identities=20% Similarity=0.108 Sum_probs=43.5
Q ss_pred CCCcEEEEhHHHHHHHHHHHHH---CCC---EEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccE
Q psy9487 9 NHGNYVVRLGHVVKWLGEQAEA---MGV---EIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKV 82 (101)
Q Consensus 9 ~~~~~~v~r~~~d~~l~~~A~~---~Gv---~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~ 82 (101)
+.+-....|..|..+|.++... .|- -.+..+.++++..++|+...-+.+.+ |....|+.
T Consensus 91 ~d~~~y~pR~lfG~Yl~e~l~~l~~~~~~~~v~~~~~~a~~~~~~~n~~~~~~~~~~---------------g~~~~ad~ 155 (474)
T COG4529 91 HDGQAYPPRRLFGEYLREQLAALLARGRQTRVRTIREEATSVRQDTNAGGYLVTTAD---------------GPSEIADI 155 (474)
T ss_pred CccccccchhHHHHHHHHHHHHHHHhcCccceeEEeeeeecceeccCCceEEEecCC---------------CCeeeeeE
Confidence 3345667788888887776533 332 23334466666664445555455544 56788999
Q ss_pred EEEeecCCchh
Q psy9487 83 TIFAEGCHGHL 93 (101)
Q Consensus 83 VI~A~G~~s~l 93 (101)
+|+|+|-.-+.
T Consensus 156 ~Vlatgh~~~~ 166 (474)
T COG4529 156 IVLATGHSAPP 166 (474)
T ss_pred EEEeccCCCCC
Confidence 99999865544
No 345
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=54.24 E-value=19 Score=32.06 Aligned_cols=50 Identities=8% Similarity=-0.092 Sum_probs=32.0
Q ss_pred EhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCc
Q psy9487 16 RLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG 91 (101)
Q Consensus 16 ~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s 91 (101)
.+..++ +..+..+++||+|.+++.+-. .+.+.+ .....+|.||+|+|++.
T Consensus 355 p~~vi~-~~i~~l~~~Gv~f~~n~~vG~----------dit~~~---------------l~~~~yDAV~LAtGA~~ 404 (944)
T PRK12779 355 PNQLID-DVVEKIKLLGGRFVKNFVVGK----------TATLED---------------LKAAGFWKIFVGTGAGL 404 (944)
T ss_pred hHHHHH-HHHHHHHhhcCeEEEeEEecc----------EEeHHH---------------hccccCCEEEEeCCCCC
Confidence 444444 447888999999998865321 122222 12346799999999963
No 346
>KOG0685|consensus
Probab=52.30 E-value=21 Score=29.84 Aligned_cols=35 Identities=23% Similarity=0.357 Sum_probs=26.1
Q ss_pred ecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEe
Q psy9487 36 YPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFA 86 (101)
Q Consensus 36 ~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A 86 (101)
..+++|.+|.+++.+.|. |+..| |..+.||+||+.
T Consensus 247 ~~~~rv~~I~~~~~~~v~-l~c~d---------------g~v~~adhVIvT 281 (498)
T KOG0685|consen 247 HLNTRVENINWKNTGEVK-LRCSD---------------GEVFHADHVIVT 281 (498)
T ss_pred cccccceeeccCCCCcEE-EEEeC---------------CcEEeccEEEEE
Confidence 344789999886445555 77766 678999999986
No 347
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=51.61 E-value=15 Score=29.86 Aligned_cols=45 Identities=13% Similarity=0.212 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCC
Q psy9487 20 VVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH 90 (101)
Q Consensus 20 ~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~ 90 (101)
+.....+.+++.|+++++++.+..-+ .. + .....++.||+|+|++
T Consensus 195 ~~~~~~~~~~~~Gv~~~~~~~v~~~~----------~~-~---------------~~~~~~d~VilAtGa~ 239 (485)
T TIGR01317 195 IVDRRIDLLSAEGIDFVTNTEIGVDI----------SA-D---------------ELKEQFDAVVLAGGAT 239 (485)
T ss_pred HHHHHHHHHHhCCCEEECCCEeCCcc----------CH-H---------------HHHhhCCEEEEccCCC
Confidence 33344678899999999998764110 00 1 0234578999999987
No 348
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=50.88 E-value=78 Score=25.19 Aligned_cols=17 Identities=18% Similarity=0.184 Sum_probs=14.6
Q ss_pred eEEEccEEEEeecCCch
Q psy9487 76 MELHAKVTIFAEGCHGH 92 (101)
Q Consensus 76 ~~i~A~~VI~A~G~~s~ 92 (101)
.++.+|.+|+|+|+...
T Consensus 132 ~~~~~d~lViATGs~p~ 148 (466)
T PRK07818 132 ETVTFDNAIIATGSSTR 148 (466)
T ss_pred eEEEcCEEEEeCCCCCC
Confidence 47999999999998754
No 349
>KOG1335|consensus
Probab=50.23 E-value=54 Score=27.21 Aligned_cols=14 Identities=36% Similarity=0.394 Sum_probs=10.4
Q ss_pred eEEEccEEEEeecC
Q psy9487 76 MELHAKVTIFAEGC 89 (101)
Q Consensus 76 ~~i~A~~VI~A~G~ 89 (101)
..|.|+.+|+|+|+
T Consensus 170 ~ii~aKnIiiATGS 183 (506)
T KOG1335|consen 170 QIIKAKNIIIATGS 183 (506)
T ss_pred eEEeeeeEEEEeCC
Confidence 56777777777775
No 350
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=50.05 E-value=17 Score=31.10 Aligned_cols=46 Identities=20% Similarity=0.153 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCC
Q psy9487 20 VVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH 90 (101)
Q Consensus 20 ~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~ 90 (101)
+..+..+..+++|++|++++.+.. .|.+.+ .....+|.||+|+|++
T Consensus 483 ~~~~~~~~l~~~gv~~~~~~~v~~----------~v~~~~---------------l~~~~ydavvlAtGa~ 528 (752)
T PRK12778 483 IVDVEIENLKKLGVKFETDVIVGK----------TITIEE---------------LEEEGFKGIFIASGAG 528 (752)
T ss_pred HHHHHHHHHHHCCCEEECCCEECC----------cCCHHH---------------HhhcCCCEEEEeCCCC
Confidence 344557788899999999875411 122221 1245689999999985
No 351
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=49.30 E-value=69 Score=25.29 Aligned_cols=16 Identities=31% Similarity=0.515 Sum_probs=14.2
Q ss_pred CeEEEccEEEEeecCC
Q psy9487 75 GMELHAKVTIFAEGCH 90 (101)
Q Consensus 75 g~~i~A~~VI~A~G~~ 90 (101)
+.++.++.+|+|+|+.
T Consensus 126 ~~~~~~d~lIiATGs~ 141 (460)
T PRK06292 126 GERIEAKNIVIATGSR 141 (460)
T ss_pred cEEEEeCEEEEeCCCC
Confidence 3679999999999987
No 352
>KOG1238|consensus
Probab=48.71 E-value=43 Score=28.79 Aligned_cols=49 Identities=20% Similarity=0.294 Sum_probs=33.9
Q ss_pred CCEEecCCceeEEEEecC-CcEEEEEeccccccCCCCCCcCCCCCeEEEcc-EEEEeecCCc
Q psy9487 32 GVEIYPGIPASEVLYHGD-GSVKGIATGDVGIAKDGSPKDTFARGMELHAK-VTIFAEGCHG 91 (101)
Q Consensus 32 Gv~i~~gt~v~~i~~~~~-g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~-~VI~A~G~~s 91 (101)
...+...+.|+.|++|.. .+..||+....+ |. -.+++|+ =||+++|+-.
T Consensus 268 NL~~~~~~~vtrvl~D~~~~~a~gv~~~~~~----~~-------~~~v~a~kEVILSAGAi~ 318 (623)
T KOG1238|consen 268 NLHISRNAAVTRVLIDPAGKRAKGVEFVRDG----GK-------EHTVKARKEVILSAGAIN 318 (623)
T ss_pred cccccccceEEEEEEcCCCceEEEEEEEecC----ce-------eeeecccceEEEeccccC
Confidence 667888899999999753 588999987531 11 1345552 2999999654
No 353
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=48.06 E-value=74 Score=27.28 Aligned_cols=19 Identities=32% Similarity=0.492 Sum_probs=15.9
Q ss_pred CeEEEccEEEEeecCCchh
Q psy9487 75 GMELHAKVTIFAEGCHGHL 93 (101)
Q Consensus 75 g~~i~A~~VI~A~G~~s~l 93 (101)
+.++.++.+|+|+|+...+
T Consensus 270 g~~i~ad~lIIATGS~P~~ 288 (659)
T PTZ00153 270 GKEFKVKNIIIATGSTPNI 288 (659)
T ss_pred CEEEECCEEEEcCCCCCCC
Confidence 3579999999999997654
No 354
>PF11432 DUF3197: Protein of unknown function (DUF3197); InterPro: IPR024443 This domain, whose function is unknown, is found in bacterial proteins.; PDB: 1WN9_A 1WNA_A.
Probab=47.52 E-value=23 Score=23.87 Aligned_cols=30 Identities=23% Similarity=0.345 Sum_probs=18.0
Q ss_pred CCCCCCCCCCcEEEEhHHHHHHHHHHHHHCCCEEec
Q psy9487 2 AFGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYP 37 (101)
Q Consensus 2 ~~~~~~~~~~~~~v~r~~~d~~l~~~A~~~Gv~i~~ 37 (101)
||||+|...|.- -..-|...+++.|+.+++
T Consensus 49 AFGPafG~~G~~------ALaELv~wl~~~G~~f~E 78 (113)
T PF11432_consen 49 AFGPAFGPEGER------ALAELVRWLQERGARFYE 78 (113)
T ss_dssp EESTTS-TTHHH------HHHHHHHHHHHTT-EEEE
T ss_pred ccCcccCccHHH------HHHHHHHHHHHcCCchhh
Confidence 699999887732 122245567788996654
No 355
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=46.31 E-value=86 Score=25.62 Aligned_cols=20 Identities=30% Similarity=0.345 Sum_probs=15.4
Q ss_pred CcEEEEhHHHHHHHHHHHHH
Q psy9487 11 GNYVVRLGHVVKWLGEQAEA 30 (101)
Q Consensus 11 ~~~~v~r~~~d~~l~~~A~~ 30 (101)
++++++|..|.+.|.+++++
T Consensus 90 g~~~vDR~lF~~~L~~qLe~ 109 (433)
T TIGR00137 90 GALAVDRGIFSRSLTEQVAS 109 (433)
T ss_pred ceEEehHHHHHHHHHHHHHh
Confidence 36677888888888877765
No 356
>KOG0405|consensus
Probab=44.90 E-value=1e+02 Score=25.37 Aligned_cols=53 Identities=19% Similarity=0.273 Sum_probs=37.4
Q ss_pred HHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCc
Q psy9487 23 WLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG 91 (101)
Q Consensus 23 ~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s 91 (101)
.+.++.+..|++++..+.+++++...++-.. +.+.. ++.-.++.++-|.|...
T Consensus 235 ~v~~~~~~~ginvh~~s~~~~v~K~~~g~~~-~i~~~---------------~~i~~vd~llwAiGR~P 287 (478)
T KOG0405|consen 235 LVTEHLEGRGINVHKNSSVTKVIKTDDGLEL-VITSH---------------GTIEDVDTLLWAIGRKP 287 (478)
T ss_pred HHHHHhhhcceeecccccceeeeecCCCceE-EEEec---------------cccccccEEEEEecCCC
Confidence 3456777899999999999999875344333 33322 34556899999999753
No 357
>PRK13984 putative oxidoreductase; Provisional
Probab=43.07 E-value=24 Score=29.17 Aligned_cols=43 Identities=16% Similarity=0.138 Sum_probs=28.9
Q ss_pred HHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCC
Q psy9487 22 KWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH 90 (101)
Q Consensus 22 ~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~ 90 (101)
....+.+++.|++++.++.|..- +.... ....+|.||+|+|++
T Consensus 337 ~~~~~~~~~~gv~~~~~~~v~~~----------~~~~~----------------~~~~yD~vilAtGa~ 379 (604)
T PRK13984 337 DKDIAFIEALGVKIHLNTRVGKD----------IPLEE----------------LREKHDAVFLSTGFT 379 (604)
T ss_pred HHHHHHHHHCCcEEECCCEeCCc----------CCHHH----------------HHhcCCEEEEEcCcC
Confidence 33467888999999999876320 11111 224689999999976
No 358
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=42.75 E-value=22 Score=31.87 Aligned_cols=23 Identities=13% Similarity=0.147 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHCCCEEecCCce
Q psy9487 19 HVVKWLGEQAEAMGVEIYPGIPA 41 (101)
Q Consensus 19 ~~d~~l~~~A~~~Gv~i~~gt~v 41 (101)
.+.+...++.+++||+|++++.+
T Consensus 481 e~~~~~~~~l~~~Gv~~~~~~~v 503 (1006)
T PRK12775 481 DIIDREVQRLVDIGVKIETNKVI 503 (1006)
T ss_pred HHHHHHHHHHHHCCCEEEeCCcc
Confidence 34455688899999999998654
No 359
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=41.20 E-value=23 Score=29.15 Aligned_cols=20 Identities=20% Similarity=0.222 Sum_probs=15.4
Q ss_pred HHHHHHHHHCCCEEecCCce
Q psy9487 22 KWLGEQAEAMGVEIYPGIPA 41 (101)
Q Consensus 22 ~~l~~~A~~~Gv~i~~gt~v 41 (101)
..-.+.++++|+++..++.+
T Consensus 191 ~~~l~~~~~~Gv~~~~~~~~ 210 (564)
T PRK12771 191 DAEIQRILDLGVEVRLGVRV 210 (564)
T ss_pred HHHHHHHHHCCCEEEeCCEE
Confidence 33467889999999988765
No 360
>PF12728 HTH_17: Helix-turn-helix domain
Probab=39.01 E-value=29 Score=18.93 Aligned_cols=21 Identities=14% Similarity=0.446 Sum_probs=15.7
Q ss_pred CCCCCCcEEEEhHHHHHHHHH
Q psy9487 6 PMNNHGNYVVRLGHVVKWLGE 26 (101)
Q Consensus 6 ~~~~~~~~~v~r~~~d~~l~~ 26 (101)
++...+.+.++++.+++|+.+
T Consensus 29 ~~~~g~~~~~~~~~l~~~~~~ 49 (51)
T PF12728_consen 29 PFKIGRKWRIPKSDLDRWLER 49 (51)
T ss_pred eEEeCCEEEEeHHHHHHHHHh
Confidence 444334699999999999764
No 361
>PF07156 Prenylcys_lyase: Prenylcysteine lyase; InterPro: IPR010795 This entry represents a conserved region found in a group of prenylcysteine lyases (1.8.3.5 from EC) that are approximately 500 residues long. Prenylcysteine lyase is a FAD-dependent thioether oxidase that degrades a variety of prenylcysteines, producing free cysteine, an isoprenoid aldehyde and hydrogen peroxide as products of the reaction []. It has been noted that this enzyme has considerable homology with ClP55, a 55 kDa protein that is associated with chloride ion pumps [].; GO: 0016670 oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor, 0030328 prenylcysteine catabolic process, 0055114 oxidation-reduction process
Probab=38.03 E-value=1.3e+02 Score=23.83 Aligned_cols=64 Identities=16% Similarity=0.219 Sum_probs=35.2
Q ss_pred CcEEEEhHHHHHHHHHHHHHCCCEEecCCceeEE-EEecCCc-EEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeec
Q psy9487 11 GNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEV-LYHGDGS-VKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEG 88 (101)
Q Consensus 11 ~~~~v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i-~~~~~g~-v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G 88 (101)
|.|.|..+. -+..-+-.+..|+.+ .+++|++| ....++. ...|...+ ..+. ..-..|.||+|+=
T Consensus 119 gl~sV~GGN-~qI~~~ll~~S~A~v-l~~~Vt~I~~~~~~~~~~y~v~~~~----~~~~--------~~~~yD~VVIAtP 184 (368)
T PF07156_consen 119 GLWSVEGGN-WQIFEGLLEASGANV-LNTTVTSITRRSSDGYSLYEVTYKS----SSGT--------ESDEYDIVVIATP 184 (368)
T ss_pred CceEecCCH-HHHHHHHHHHccCcE-ecceeEEEEeccCCCceeEEEEEec----CCCC--------ccccCCEEEECCC
Confidence 456666654 222233345689999 88999999 3322333 33344332 1111 1123499999953
No 362
>PLN03117 Branched-chain-amino-acid aminotransferase; Provisional
Probab=37.77 E-value=1e+02 Score=24.20 Aligned_cols=63 Identities=21% Similarity=0.253 Sum_probs=36.8
Q ss_pred HHHHHHHHHHCCCEEecCC-------ceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487 21 VKWLGEQAEAMGVEIYPGI-------PASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL 93 (101)
Q Consensus 21 d~~l~~~A~~~Gv~i~~gt-------~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l 93 (101)
-+++.+.|+++|.++.+.. .+.++..- +...+|.-.. ........+.+.+|. +++
T Consensus 263 R~~vl~la~~~Gi~v~Er~i~~~eL~~AdEvFlt--nT~~~I~PV~---------------~i~~~~~~~~~~~~~-~~~ 324 (355)
T PLN03117 263 RKSISELARDIGYQVEERDVSVDELLEAEEVFCT--GTAVVVKAVE---------------TVTFHDKKVKYRTGE-EAL 324 (355)
T ss_pred HHHHHHHHHHCCCEEEEEEccHHHHhhCCEEEEc--cCcceEEEEE---------------EEEecCceEEeCCCC-ChH
Confidence 3567788899999988764 33444332 3334433221 012223455667774 799
Q ss_pred hHHHhhhC
Q psy9487 94 TKSLSSRF 101 (101)
Q Consensus 94 ~~~l~~~~ 101 (101)
+++|.+.|
T Consensus 325 ~~~l~~~~ 332 (355)
T PLN03117 325 STKLHLIL 332 (355)
T ss_pred HHHHHHHH
Confidence 98888754
No 363
>PRK04101 fosfomycin resistance protein FosB; Provisional
Probab=36.73 E-value=61 Score=21.05 Aligned_cols=26 Identities=19% Similarity=0.459 Sum_probs=21.3
Q ss_pred cEEEEhHHHHHHHHHHHHHCCCEEecC
Q psy9487 12 NYVVRLGHVVKWLGEQAEAMGVEIYPG 38 (101)
Q Consensus 12 ~~~v~r~~~d~~l~~~A~~~Gv~i~~g 38 (101)
+|.+++..++.+ .++++++|+++..+
T Consensus 68 af~v~~~dv~~~-~~~l~~~G~~i~~~ 93 (139)
T PRK04101 68 AFSIEEEDFDHW-YQRLKENDVNILPG 93 (139)
T ss_pred EEEecHHHHHHH-HHHHHHCCceEcCC
Confidence 577778899998 77899999998753
No 364
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=35.78 E-value=45 Score=20.53 Aligned_cols=21 Identities=33% Similarity=0.544 Sum_probs=15.0
Q ss_pred hHHHHHHHHHHHHHCCCEEec
Q psy9487 17 LGHVVKWLGEQAEAMGVEIYP 37 (101)
Q Consensus 17 r~~~d~~l~~~A~~~Gv~i~~ 37 (101)
|.=|.+|+.+.|.+.|+++-.
T Consensus 14 RNCLskWy~~aA~~~g~~~~~ 34 (68)
T PF06844_consen 14 RNCLSKWYREAAEERGIEMDK 34 (68)
T ss_dssp HHHHHHHHHHHHHHCT----H
T ss_pred HHHHHHHHHHHHHhcCCcCCH
Confidence 677899999999999988743
No 365
>KOG0405|consensus
Probab=32.34 E-value=1.4e+02 Score=24.60 Aligned_cols=55 Identities=18% Similarity=0.260 Sum_probs=34.6
Q ss_pred HHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487 21 VKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL 93 (101)
Q Consensus 21 d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l 93 (101)
.-.+.+...+.+|+++.|.. .+-+++.| .|+.++ |. ...+.|+.+.+|+|.....
T Consensus 113 ngIY~~~L~k~~V~~i~G~a----~f~~~~~v-~V~~~d------~~-------~~~Ytak~iLIAtGg~p~~ 167 (478)
T KOG0405|consen 113 NGIYKRNLAKAAVKLIEGRA----RFVSPGEV-EVEVND------GT-------KIVYTAKHILIATGGRPII 167 (478)
T ss_pred HHHHHhhccccceeEEeeeE----EEcCCCce-EEEecC------Ce-------eEEEecceEEEEeCCccCC
Confidence 33444556678899998853 12123443 377665 11 1358999999999987654
No 366
>cd09012 Glo_EDI_BRP_like_24 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=31.77 E-value=99 Score=19.27 Aligned_cols=21 Identities=24% Similarity=0.109 Sum_probs=17.0
Q ss_pred hHHHHHHHHHHHHHCCCEEecC
Q psy9487 17 LGHVVKWLGEQAEAMGVEIYPG 38 (101)
Q Consensus 17 r~~~d~~l~~~A~~~Gv~i~~g 38 (101)
+..+|.+ .++++++|+++...
T Consensus 79 ~~~vd~~-~~~l~~~G~~i~~~ 99 (124)
T cd09012 79 REEVDEL-VEKALAAGGKEFRE 99 (124)
T ss_pred HHHHHHH-HHHHHHCCCcccCC
Confidence 4578876 88999999999865
No 367
>COG0810 TonB Periplasmic protein TonB, links inner and outer membranes [Cell envelope biogenesis, outer membrane]
Probab=30.85 E-value=1e+02 Score=22.71 Aligned_cols=32 Identities=25% Similarity=0.308 Sum_probs=26.0
Q ss_pred HHHHHHCCCEEecCCceeEEEEecCCcEEEEEecc
Q psy9487 25 GEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGD 59 (101)
Q Consensus 25 ~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~ 59 (101)
=..|+.+|. .|+....+.++.+|+|..|++..
T Consensus 170 P~~A~~~g~---~G~V~V~f~i~~~G~v~~v~v~~ 201 (244)
T COG0810 170 PAQARARGI---EGTVKVKFTIDPDGNVTNVRVLK 201 (244)
T ss_pred cHHHHhcCC---CceEEEEEEECCCCCEeeeEEee
Confidence 457888886 77788888888889999998864
No 368
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=30.83 E-value=93 Score=23.31 Aligned_cols=45 Identities=18% Similarity=0.327 Sum_probs=33.4
Q ss_pred HHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487 29 EAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL 93 (101)
Q Consensus 29 ~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l 93 (101)
++.++++++++.|..+-.+ +. -|.+.+ + ++..|..|+|+|++...
T Consensus 64 ~~~~i~~~~~~~v~~id~~-~~---~v~~~~---------------g-~~~yd~LvlatGa~~~~ 108 (415)
T COG0446 64 RATGIDVRTGTEVTSIDPE-NK---VVLLDD---------------G-EIEYDYLVLATGARPRP 108 (415)
T ss_pred HhhCCEEeeCCEEEEecCC-CC---EEEECC---------------C-cccccEEEEcCCCcccC
Confidence 5679999999999999653 32 244443 3 68889999999987643
No 369
>KOG1346|consensus
Probab=30.47 E-value=74 Score=26.86 Aligned_cols=59 Identities=17% Similarity=0.225 Sum_probs=44.7
Q ss_pred CcEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCC
Q psy9487 11 GNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH 90 (101)
Q Consensus 11 ~~~~v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~ 90 (101)
.+|.++-..|+ ++..-||-++.|-.|.+|.-+ +. -|.++| |.+|.-+...+|+|..
T Consensus 255 d~FfvspeDLp-----~~~nGGvAvl~G~kvvkid~~-d~---~V~LnD---------------G~~I~YdkcLIATG~~ 310 (659)
T KOG1346|consen 255 DGFFVSPEDLP-----KAVNGGVAVLRGRKVVKIDEE-DK---KVILND---------------GTTIGYDKCLIATGVR 310 (659)
T ss_pred CcceeChhHCc-----ccccCceEEEeccceEEeecc-cC---eEEecC---------------CcEeehhheeeecCcC
Confidence 35666665544 567789999999999999764 33 366776 7899999999999987
Q ss_pred chh
Q psy9487 91 GHL 93 (101)
Q Consensus 91 s~l 93 (101)
..-
T Consensus 311 Pk~ 313 (659)
T KOG1346|consen 311 PKK 313 (659)
T ss_pred ccc
Confidence 643
No 370
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=30.37 E-value=88 Score=25.38 Aligned_cols=49 Identities=16% Similarity=0.198 Sum_probs=34.6
Q ss_pred HHHHHHHCC-CEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCch
Q psy9487 24 LGEQAEAMG-VEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH 92 (101)
Q Consensus 24 l~~~A~~~G-v~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~ 92 (101)
+.+.+++.+ |+++.+ +|++|-.+ +.+ |.+.+ +.+|.-|..|+|.|+...
T Consensus 63 ~~~~~~~~~~v~~~~~-~V~~ID~~-~k~---V~~~~---------------~~~i~YD~LVvalGs~~~ 112 (405)
T COG1252 63 LRALLRKSGNVQFVQG-EVTDIDRD-AKK---VTLAD---------------LGEISYDYLVVALGSETN 112 (405)
T ss_pred HHHHhcccCceEEEEE-EEEEEccc-CCE---EEeCC---------------CccccccEEEEecCCcCC
Confidence 455666556 888886 78888774 333 44443 257999999999998764
No 371
>KOG0029|consensus
Probab=29.32 E-value=1.3e+02 Score=24.89 Aligned_cols=39 Identities=18% Similarity=0.336 Sum_probs=28.7
Q ss_pred CCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEe
Q psy9487 32 GVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFA 86 (101)
Q Consensus 32 Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A 86 (101)
|.+|..+..|..|.+.+++. +.+.+.. +..+.+|.||++
T Consensus 228 ~l~I~~~~~v~~i~~~~~~~-~~~~~~~---------------~~~~~~d~vvvt 266 (501)
T KOG0029|consen 228 GLDIHLNKRVRKIKYGDDGA-VKVTVET---------------GDGYEADAVVVT 266 (501)
T ss_pred CcceeeceeeEEEEEecCCc-eEEEEEC---------------CCeeEeeEEEEE
Confidence 89999999999999975555 3333332 234889999887
No 372
>TIGR01352 tonB_Cterm TonB family C-terminal domain. This model represents the C-terminal of TonB and is homologs. TonB is an energy-transducer for TonB-dependent receptors of Gram-negative bacteria. Most members are designated as TonB or TonB-related proteins, but a few represent the paralogous TolA protein. Several bacteria have up to four TonB paralogs. In nearly every case, a proline-rich repetive region is found N-terminal to this domain; these low-complexity regions are highly divergent and cannot readily be aligned. The region is suggested to help span the periplasm.
Probab=29.11 E-value=1.2e+02 Score=17.28 Aligned_cols=30 Identities=23% Similarity=0.367 Sum_probs=20.8
Q ss_pred HHHHCCCEEecCCceeEEEEecCCcEEEEEecc
Q psy9487 27 QAEAMGVEIYPGIPASEVLYHGDGSVKGIATGD 59 (101)
Q Consensus 27 ~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~ 59 (101)
+|++.|.+ |+.+.++..+.+|++..+++..
T Consensus 2 ~a~~~~~~---G~v~v~~~i~~~G~v~~~~i~~ 31 (74)
T TIGR01352 2 RARRRGIE---GTVVVRFTVDADGRVTSVSVLK 31 (74)
T ss_pred hHHHcCCc---eEEEEEEEECCCCCEEEEEEEE
Confidence 35555633 6677788887788988887753
No 373
>COG2044 Predicted peroxiredoxins [General function prediction only]
Probab=28.37 E-value=36 Score=23.14 Aligned_cols=36 Identities=28% Similarity=0.243 Sum_probs=23.6
Q ss_pred HHHHHHHHCCCEEecCCceeEEE-EecCCcEEEEEec
Q psy9487 23 WLGEQAEAMGVEIYPGIPASEVL-YHGDGSVKGIATG 58 (101)
Q Consensus 23 ~l~~~A~~~Gv~i~~gt~v~~i~-~~~~g~v~GV~~~ 58 (101)
.+.++|.++||+++......+.. .+++.-+-||++.
T Consensus 66 ~~~~~a~e~GVk~yvCe~s~~~~~~~ed~l~egvkI~ 102 (120)
T COG2044 66 ELIKQAIEAGVKIYVCEQSLKLRGIKEDDLVEGVKIV 102 (120)
T ss_pred HHHHHHHHcCCEEEEEcchhhhcCcchhhhhhccEec
Confidence 45899999999999887655521 2223445555554
No 374
>PF02951 GSH-S_N: Prokaryotic glutathione synthetase, N-terminal domain; InterPro: IPR004215 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This domain is the N terminus of the enzyme.; GO: 0004363 glutathione synthase activity, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=27.59 E-value=79 Score=21.18 Aligned_cols=33 Identities=21% Similarity=0.220 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEE
Q psy9487 20 VVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKG 54 (101)
Q Consensus 20 ~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~G 54 (101)
-.-.|..+|++.|-+++. ....++.++ +|++.+
T Consensus 19 TT~alm~eAq~RGhev~~-~~~~dL~~~-~g~~~a 51 (119)
T PF02951_consen 19 TTFALMLEAQRRGHEVFY-YEPGDLSLR-DGRVWA 51 (119)
T ss_dssp HHHHHHHHHHHTT-EEEE-E-GGGEEEE-TTEEEE
T ss_pred hHHHHHHHHHHCCCEEEE-EEcCcEEEE-CCEEEE
Confidence 345689999999999998 467788885 676653
No 375
>cd00449 PLPDE_IV PyridoxaL 5'-Phosphate Dependent Enzymes class IV (PLPDE_IV). This D-amino acid superfamily, one of five classes of PLPDE, consists of branched-chain amino acid aminotransferases (BCAT), D-amino acid transferases (DAAT), and 4-amino-4-deoxychorismate lyases (ADCL). BCAT catalyzes the reversible transamination reaction between the L-branched-chain amino and alpha-keto acids. DAAT catalyzes the synthesis of D-glutamic acid and D-alanine, and ADCL converts 4-amino-4-deoxychorismate to p-aminobenzoate and pyruvate. Except for a few enzymes, i. e., Escherichia coli and Salmonella BCATs, which are homohexamers arranged as a double trimer, the class IV PLPDEs are homodimers. Homodimer formation is required for catalytic activity.
Probab=26.93 E-value=2.4e+02 Score=20.21 Aligned_cols=21 Identities=14% Similarity=0.096 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHCCCEEecCC
Q psy9487 19 HVVKWLGEQAEAMGVEIYPGI 39 (101)
Q Consensus 19 ~~d~~l~~~A~~~Gv~i~~gt 39 (101)
..-+++.+.|+++|.++.+..
T Consensus 188 itR~~vl~~~~~~g~~v~e~~ 208 (256)
T cd00449 188 ITRDSVIELAKELGIKVEERP 208 (256)
T ss_pred hhHHHHHHHHHHcCCeEEEEe
Confidence 344677888999999988874
No 376
>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=26.56 E-value=93 Score=18.06 Aligned_cols=20 Identities=25% Similarity=0.443 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHCCCEEec
Q psy9487 18 GHVVKWLGEQAEAMGVEIYP 37 (101)
Q Consensus 18 ~~~d~~l~~~A~~~Gv~i~~ 37 (101)
..|-++|..+|++.|+.+..
T Consensus 2 ~~~~~~L~yka~~~G~~v~~ 21 (69)
T PF07282_consen 2 GQFRQRLEYKAEEYGIQVVE 21 (69)
T ss_pred HHHHHHHHHHHHHhCCEEEE
Confidence 35788999999999988864
No 377
>COG3492 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.53 E-value=61 Score=21.33 Aligned_cols=20 Identities=35% Similarity=0.602 Sum_probs=17.1
Q ss_pred hHHHHHHHHHHHHHCCCEEe
Q psy9487 17 LGHVVKWLGEQAEAMGVEIY 36 (101)
Q Consensus 17 r~~~d~~l~~~A~~~Gv~i~ 36 (101)
|.-+..|+.+.|++.||++-
T Consensus 45 RNCLs~Wy~eaae~~gv~ls 64 (104)
T COG3492 45 RNCLSNWYREAAEAQGVDLS 64 (104)
T ss_pred HHHHHHHHHHHHhccCCCcc
Confidence 56688999999999999875
No 378
>PF09894 DUF2121: Uncharacterized protein conserved in archaea (DUF2121); InterPro: IPR016754 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. They do show distant similarity to NTPases and to nucleic acid binding enzymes.
Probab=24.43 E-value=1.4e+02 Score=22.08 Aligned_cols=33 Identities=24% Similarity=0.140 Sum_probs=21.9
Q ss_pred HHHHHHHHHHCCCEEecCCceeEEEEecCCcEEE
Q psy9487 21 VKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKG 54 (101)
Q Consensus 21 d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~G 54 (101)
|.-|.++|+++||.|...-.-..+..- ++-++|
T Consensus 46 deEL~kkA~Elgv~i~I~D~r~KV~~~-~~vlvG 78 (194)
T PF09894_consen 46 DEELLKKAEELGVKIKITDDREKVRKI-GDVLVG 78 (194)
T ss_pred HHHHHHHHHHcCCEEEEecCchheEEe-CCEEEE
Confidence 566899999999998865544444332 444444
No 379
>PF07338 DUF1471: Protein of unknown function (DUF1471); InterPro: IPR010854 This entry consists of several hypothetical Enterobacterial proteins of around 90 residues in length. Some of the proteins are annotated as ydgH precursors and contain two copies of this region, one at the N terminus and the other at the C terminus. The function of this family is unknown.; PDB: 2NOC_A 2JNA_B 4EVU_B.
Probab=23.96 E-value=88 Score=18.05 Aligned_cols=22 Identities=18% Similarity=0.286 Sum_probs=17.5
Q ss_pred EhHHHHHHHHHHHHHCCCEEec
Q psy9487 16 RLGHVVKWLGEQAEAMGVEIYP 37 (101)
Q Consensus 16 ~r~~~d~~l~~~A~~~Gv~i~~ 37 (101)
+...+.+.|.++|.++|+..+.
T Consensus 16 s~~d~~~~la~kAd~~GA~~y~ 37 (56)
T PF07338_consen 16 SPDDAEEALAKKADEKGAKYYR 37 (56)
T ss_dssp SHHHHHHHHHHHHHHTT-SEEE
T ss_pred CHHHHHHHHHHHHHHcCCCEEE
Confidence 4567788899999999998883
No 380
>PF10049 DUF2283: Protein of unknown function (DUF2283); InterPro: IPR019270 Members of this family of hypothetical proteins have no known function.
Probab=23.62 E-value=1e+02 Score=17.22 Aligned_cols=14 Identities=36% Similarity=0.513 Sum_probs=9.7
Q ss_pred EEecCCcEEEEEec
Q psy9487 45 LYHGDGSVKGIATG 58 (101)
Q Consensus 45 ~~~~~g~v~GV~~~ 58 (101)
-++++|+++|+++-
T Consensus 34 d~d~~G~ivGIEIl 47 (50)
T PF10049_consen 34 DYDEDGRIVGIEIL 47 (50)
T ss_pred EECCCCCEEEEEEE
Confidence 35556888888764
No 381
>PRK09897 hypothetical protein; Provisional
Probab=22.95 E-value=2.1e+02 Score=23.91 Aligned_cols=17 Identities=24% Similarity=0.020 Sum_probs=14.2
Q ss_pred EEEccEEEEeecCCchh
Q psy9487 77 ELHAKVTIFAEGCHGHL 93 (101)
Q Consensus 77 ~i~A~~VI~A~G~~s~l 93 (101)
....++||+|+|....=
T Consensus 433 ~~~~~~~i~a~G~~~~~ 449 (534)
T PRK09897 433 SYSFDVFIDARGQRPLK 449 (534)
T ss_pred ceEeCEEEECCCCCCCc
Confidence 68889999999987643
No 382
>PF03544 TonB_C: Gram-negative bacterial TonB protein C-terminal; InterPro: IPR006260 The sequences in this set all contain a conserved C-terminal domain which is characteristic of TonB and is homologs. TonB is an energy-transducer for TonB-dependent receptors of Gram-negative bacteria []. Most members are designated as TonB or TonB-related proteins, but a few represent the paralogous TolA protein. Several bacteria have up to four TonB paralogs. In nearly every case, a proline-rich repetitive region is found N-terminal to this domain; these low-complexity regions are highly divergent and cannot readily be aligned. The region is suggested to span the periplasm. Iron is essential for growth in both bacteria and mammals. Controlling the amount of free iron in solution is often used as a tactic by hosts to limit invasion of pathogenic microbes; binding iron tightly within protein molecules can accomplish this. Some bacteria express surface receptors to capture eukaryotic iron-binding compounds, while others have evolved siderophores to scavenge iron from iron-binding host proteins []. The absence of free iron molecules in the surrounding environment triggers transcription of gene clusters that encode both siderophore-synthesis ezymes, and receptors that recognise iron-bound siderophores []. An example of the latter is Escherichia coli fepA, which resides in the outer envelope and captures iron-bound enterobactin []. To complete transport of bound iron across the inner membrane, a second receptor complex is needed. The major component of this is tonB, a 27kDa protein that facilitates energy transfer from the proton motive force to outer receptors. B-12 and colicin receptors also make use of the tonB system to drive active transport at the outer membrane.; GO: 0008565 protein transporter activity, 0015031 protein transport, 0016020 membrane, 0030288 outer membrane-bounded periplasmic space; PDB: 1U07_B 1IHR_A 2GRX_C 2GSK_B 1QXX_A 1XX3_A 2K9K_A.
Probab=22.77 E-value=1e+02 Score=17.84 Aligned_cols=30 Identities=23% Similarity=0.322 Sum_probs=20.0
Q ss_pred HHHHCCCEEecCCceeEEEEecCCcEEEEEecc
Q psy9487 27 QAEAMGVEIYPGIPASEVLYHGDGSVKGIATGD 59 (101)
Q Consensus 27 ~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~ 59 (101)
.|.+.|+ +|+...++..+.+|++..+++..
T Consensus 8 ~a~~~~~---~G~v~v~~~I~~~G~v~~~~v~~ 37 (79)
T PF03544_consen 8 EARRRGI---EGTVVVEFTIDPDGRVSDVRVIQ 37 (79)
T ss_dssp HHHHHTE---EEEEEEEEEEETTTEEEEEEEEE
T ss_pred HHHHCCC---eEEEEEEEEEeCCCCEEEEEEEE
Confidence 3444453 55666777777788888887654
No 383
>PLN02782 Branched-chain amino acid aminotransferase
Probab=22.72 E-value=2.1e+02 Score=22.97 Aligned_cols=64 Identities=17% Similarity=0.234 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHCCCEEecCC-ce------eEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEE--EccEEEEeecC
Q psy9487 19 HVVKWLGEQAEAMGVEIYPGI-PA------SEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMEL--HAKVTIFAEGC 89 (101)
Q Consensus 19 ~~d~~l~~~A~~~Gv~i~~gt-~v------~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i--~A~~VI~A~G~ 89 (101)
..-+.+.+.|+++|.++.+.. .+ .++.. -|...+|.=. ..| .-..+.+.+|.
T Consensus 312 ITR~svlela~~~Gi~V~Er~i~~~eL~~AdEvF~--tgTa~~V~PV-----------------~~I~~~g~~~~~~~g~ 372 (403)
T PLN02782 312 ITRKSIIDVARSQGFQVEERNVTVDELLEADEVFC--TGTAVVVSPV-----------------GSITYKGKRVSYGEGG 372 (403)
T ss_pred HHHHHHHHHHHHcCCeEEEEECCHHHHhhCCEEEE--ccCcceEEEE-----------------EEEEECCEEEeCCCCC
Confidence 344567788899998887764 22 23322 1333333322 123 22333346677
Q ss_pred CchhhHHHhhhC
Q psy9487 90 HGHLTKSLSSRF 101 (101)
Q Consensus 90 ~s~l~~~l~~~~ 101 (101)
.++++++|.+.|
T Consensus 373 ~Gpvt~~L~~~l 384 (403)
T PLN02782 373 FGTVSQQLYTVL 384 (403)
T ss_pred cCHHHHHHHHHH
Confidence 788988887653
No 384
>cd08344 MhqB_like_N N-terminal domain of MhqB, a type I extradiol dioxygenase, and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=22.71 E-value=1.5e+02 Score=18.08 Aligned_cols=26 Identities=15% Similarity=0.275 Sum_probs=20.7
Q ss_pred cEEEEhHHHHHHHHHHHHHCCCEEecC
Q psy9487 12 NYVVRLGHVVKWLGEQAEAMGVEIYPG 38 (101)
Q Consensus 12 ~~~v~r~~~d~~l~~~A~~~Gv~i~~g 38 (101)
++.+....++.+ .++++++|+++..+
T Consensus 60 ~~~~~~~d~~~~-~~~l~~~Gi~~~~~ 85 (112)
T cd08344 60 SFGIFEDDFAAF-ARHLEAAGVALAAA 85 (112)
T ss_pred EEEeEhhhHHHH-HHHHHHcCCceecC
Confidence 466677889887 78899999998754
No 385
>PRK06724 hypothetical protein; Provisional
Probab=21.68 E-value=1e+02 Score=20.17 Aligned_cols=24 Identities=17% Similarity=0.148 Sum_probs=19.5
Q ss_pred EEEhHHHHHHHHHHHHHCCCEEecC
Q psy9487 14 VVRLGHVVKWLGEQAEAMGVEIYPG 38 (101)
Q Consensus 14 ~v~r~~~d~~l~~~A~~~Gv~i~~g 38 (101)
+.++..+|.+ .++++++|+++..+
T Consensus 71 v~~~~dvd~~-~~~l~~~G~~~~~~ 94 (128)
T PRK06724 71 AINRKVVDEV-AEFLSSTKIKIIRG 94 (128)
T ss_pred cCChHHHHHH-HHHHHHCCCEEecC
Confidence 3567899988 88999999998754
No 386
>KOG2495|consensus
Probab=21.64 E-value=4.9e+02 Score=21.88 Aligned_cols=64 Identities=25% Similarity=0.236 Sum_probs=42.1
Q ss_pred HHHHHHHHHHH----HCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCch-h
Q psy9487 19 HVVKWLGEQAE----AMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH-L 93 (101)
Q Consensus 19 ~~d~~l~~~A~----~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~-l 93 (101)
-||+-|.+-|+ +.|+++.+++.|+++.- .. .-+++. +|+. .+|.--++|-|+|.... +
T Consensus 270 mFdkrl~~yae~~f~~~~I~~~~~t~Vk~V~~---~~-I~~~~~------~g~~-------~~iPYG~lVWatG~~~rp~ 332 (491)
T KOG2495|consen 270 MFDKRLVEYAENQFVRDGIDLDTGTMVKKVTE---KT-IHAKTK------DGEI-------EEIPYGLLVWATGNGPRPV 332 (491)
T ss_pred HHHHHHHHHHHHHhhhccceeecccEEEeecC---cE-EEEEcC------CCce-------eeecceEEEecCCCCCchh
Confidence 45666655554 58999999999999842 22 223432 3443 67888899999997654 3
Q ss_pred hHHHhh
Q psy9487 94 TKSLSS 99 (101)
Q Consensus 94 ~~~l~~ 99 (101)
.+.|++
T Consensus 333 ~k~lm~ 338 (491)
T KOG2495|consen 333 IKDLMK 338 (491)
T ss_pred hhhHhh
Confidence 566654
No 387
>PF01906 YbjQ_1: Putative heavy-metal-binding; InterPro: IPR002765 This family of bacterial proteins have not been characterised.; PDB: 3QKB_A 1VR4_D 1Y2I_D 2GTC_C.
Probab=21.53 E-value=2.3e+02 Score=18.10 Aligned_cols=27 Identities=19% Similarity=0.260 Sum_probs=17.6
Q ss_pred hHHHHHHHHHHHHHCCCEEecCCceeE
Q psy9487 17 LGHVVKWLGEQAEAMGVEIYPGIPASE 43 (101)
Q Consensus 17 r~~~d~~l~~~A~~~Gv~i~~gt~v~~ 43 (101)
|...-+-|.++|+++|++-+.+....-
T Consensus 58 r~~A~~~L~~~A~~~GAnAVIgv~~~~ 84 (105)
T PF01906_consen 58 REEALERLKEEAKELGANAVIGVRFDY 84 (105)
T ss_dssp HHHHHHHHHHHHHHTT-SEEEEEEEEE
T ss_pred HHHHHHHHHHHHhhCCCCEEEEEEEEe
Confidence 455556679999999987655544433
No 388
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=21.47 E-value=1.8e+02 Score=23.97 Aligned_cols=52 Identities=17% Similarity=0.151 Sum_probs=33.5
Q ss_pred HHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487 25 GEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL 93 (101)
Q Consensus 25 ~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l 93 (101)
..-+...+-.|.++++|..|..-.+| |.+.+ .+ |..-+.|.||+|+=+.-.+
T Consensus 224 q~laa~~~~~i~t~~~V~~l~rlPdG----v~l~~----~~---------G~s~rFD~vViAth~dqAl 275 (447)
T COG2907 224 QRLAADIRGRIETRTPVCRLRRLPDG----VVLVN----AD---------GESRRFDAVVIATHPDQAL 275 (447)
T ss_pred HHHhccccceeecCCceeeeeeCCCc----eEEec----CC---------CCccccceeeeecChHHHH
Confidence 44455555569999999999764454 33332 12 4567889999997654433
No 389
>PF14542 Acetyltransf_CG: GCN5-related N-acetyl-transferase; PDB: 2H5M_A 2Q44_A 1XMT_A 2Q4Y_A 2IL4_A 2EVN_A 1R57_A.
Probab=21.20 E-value=1.5e+02 Score=17.89 Aligned_cols=23 Identities=17% Similarity=0.229 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHCCCEEecCCc
Q psy9487 18 GHVVKWLGEQAEAMGVEIYPGIP 40 (101)
Q Consensus 18 ~~~d~~l~~~A~~~Gv~i~~gt~ 40 (101)
+.|.+.+++.|++.|..|.+.|+
T Consensus 41 ~~L~~~~l~~a~~~~~kv~p~C~ 63 (78)
T PF14542_consen 41 KKLVEAALDYARENGLKVVPTCS 63 (78)
T ss_dssp HHHHHHHHHHHHHTT-EEEETSH
T ss_pred HHHHHHHHHHHHHCCCEEEEECH
Confidence 45677789999999999998875
No 390
>KOG2355|consensus
Probab=20.91 E-value=70 Score=24.58 Aligned_cols=28 Identities=21% Similarity=0.317 Sum_probs=24.4
Q ss_pred EEEhHHHHHHHHHHHHHCCCEEecCCce
Q psy9487 14 VVRLGHVVKWLGEQAEAMGVEIYPGIPA 41 (101)
Q Consensus 14 ~v~r~~~d~~l~~~A~~~Gv~i~~gt~v 41 (101)
++.|..+..+|.++++..|+.|+.-|.+
T Consensus 180 VlARadLLeFlkeEce~RgatIVYATHI 207 (291)
T KOG2355|consen 180 VLARADLLEFLKEECEQRGATIVYATHI 207 (291)
T ss_pred HHHHHHHHHHHHHHHhhcCcEEEEEeee
Confidence 5678999999999999999999987754
No 391
>cd08357 Glo_EDI_BRP_like_18 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=20.87 E-value=2.1e+02 Score=17.36 Aligned_cols=26 Identities=23% Similarity=0.244 Sum_probs=20.9
Q ss_pred cEEEEhHHHHHHHHHHHHHCCCEEecC
Q psy9487 12 NYVVRLGHVVKWLGEQAEAMGVEIYPG 38 (101)
Q Consensus 12 ~~~v~r~~~d~~l~~~A~~~Gv~i~~g 38 (101)
++.+....++.+ .++++++|+++...
T Consensus 70 ~~~~~~~dv~~~-~~~l~~~g~~~~~~ 95 (125)
T cd08357 70 GLILSEEEFDAL-AERLEAAGVEFLIE 95 (125)
T ss_pred EEEEeHHHHHHH-HHHHHHCCCcEecC
Confidence 456778888877 88999999998853
No 392
>PRK10819 transport protein TonB; Provisional
Probab=20.38 E-value=1.9e+02 Score=21.75 Aligned_cols=32 Identities=22% Similarity=0.268 Sum_probs=24.6
Q ss_pred HHHHHHCCCEEecCCceeEEEEecCCcEEEEEecc
Q psy9487 25 GEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGD 59 (101)
Q Consensus 25 ~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~ 59 (101)
=.+|+++|.+ |+...++..+.+|+|..+++.+
T Consensus 171 P~~A~~~g~e---G~V~V~f~I~~~G~V~~v~V~~ 202 (246)
T PRK10819 171 PARAQALRIE---GQVKVKFDVDEDGRVDNVRILS 202 (246)
T ss_pred CHHHHHcCCc---eEEEEEEEECCCCCEEEEEEec
Confidence 4678888854 6677788887789999998764
No 393
>PF03738 GSP_synth: Glutathionylspermidine synthase preATP-grasp; InterPro: IPR005494 This region contains the Glutathionylspermidine synthase enzymatic activity 6.3.1.8 from EC. This is the C-terminal region in bienzymes such as P43675 from SWISSPROT. Glutathionylspermidine (GSP) synthetases of Trypanosomatidae and Escherichia coli couple hydrolysis of ATP (to ADP and Pi) with formation of an amide bond between spermidine and the glycine carboxylate of glutathione (gamma-Glu-Cys-Gly). In the pathogenic trypanosomatids, this reaction is the penultimate step in the biosynthesis of the antioxidant metabolite, trypanothione (N1,N8-bis-(glutathionyl)spermidine), and is a target for drug design [].; PDB: 2VPM_B 2VOB_B 2VPS_A 2IO9_A 2IO8_A 2IOB_A 2IOA_B 2IO7_B 3O98_B.
Probab=20.06 E-value=1.2e+02 Score=18.96 Aligned_cols=31 Identities=26% Similarity=0.485 Sum_probs=20.7
Q ss_pred HHHHHHHHHHCCCEEecCCceeEEEEecCCcE
Q psy9487 21 VKWLGEQAEAMGVEIYPGIPASEVLYHGDGSV 52 (101)
Q Consensus 21 d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v 52 (101)
...|.+.|+++|.+... +.+.+|.+++++++
T Consensus 17 ~~yL~~~a~qaG~~~~~-~~i~~l~~~~~g~~ 47 (97)
T PF03738_consen 17 VQYLMDTARQAGLDTRF-IPIEDLGWDEDGRF 47 (97)
T ss_dssp HHHHHHHHHHTT-EEEE-ETTTTEEE-TTS-E
T ss_pred HHHHHHHHHHCCCCeEE-echHheEECCCCcE
Confidence 36789999999988554 57778888645554
Done!