RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy9487
         (101 letters)



>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer
           flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus
           scrofa) [TaxId: 9823]}
          Length = 380

 Score = 68.0 bits (165), Expect = 2e-15
 Identities = 74/97 (76%), Positives = 85/97 (87%)

Query: 1   MAFGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDV 60
           +  G+PMNNHGNYVVRLGH+V W+GEQAEA+GVE+YPG  A+E+L+H DGSVKGIAT DV
Sbjct: 124 ILPGLPMNNHGNYVVRLGHLVSWMGEQAEALGVEVYPGYAAAEILFHEDGSVKGIATNDV 183

Query: 61  GIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLTKSL 97
           GI KDG+PK TF RG+ELHAKVTIFAEGCHGHL K L
Sbjct: 184 GIQKDGAPKTTFERGLELHAKVTIFAEGCHGHLAKQL 220


>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale
           cress(Arabidopsis thaliana) [TaxId: 3702]}
          Length = 278

 Score = 36.8 bits (84), Expect = 2e-04
 Identities = 11/93 (11%), Positives = 31/93 (33%), Gaps = 2/93 (2%)

Query: 8   NNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGS 67
           + +             + +      V+++  + A +++  G+  V G+ T    +     
Sbjct: 104 DTYVVVKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGNR-VGGVVTN-WALVAQNH 161

Query: 68  PKDTFARGMELHAKVTIFAEGCHGHLTKSLSSR 100
              +      + AK+ + + G  G    +   R
Sbjct: 162 HTQSCMDPNVMEAKIVVSSCGHDGPFGATGVKR 194


>d2gjva1 d.323.1.2 (A:1-134) Putative cytoplasmic protein STM4215
          {Salmonella typhimurium [TaxId: 90371]}
          Length = 134

 Score = 27.1 bits (60), Expect = 0.28
 Identities = 10/65 (15%), Positives = 20/65 (30%), Gaps = 4/65 (6%)

Query: 20 VVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELH 79
          V   L E    M + I        +      +V     G    +    P++T A   +  
Sbjct: 10 VANRLRELNPDMDIHISSTDAKVYIPTGQQVTVLIHYCG----SVFAEPENTDATVQKQL 65

Query: 80 AKVTI 84
           +++ 
Sbjct: 66 IRISA 70


>d1gppa_ b.86.1.2 (A:) VMA1-derived endonuclease (VDE) PI-Scei
          intein {Baker's yeast (Saccharomyces cerevisiae)
          [TaxId: 4932]}
          Length = 229

 Score = 24.5 bits (53), Expect = 3.0
 Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 5/34 (14%)

Query: 49 DGSVK---GIATGDVGIAKDGSPKDTFA--RGME 77
          DGS++    I  G+  + KDG P++     RG E
Sbjct: 14 DGSIECIENIEVGNKVMGKDGRPREVIKLPRGSE 47


>d1yzya1 c.146.1.1 (A:1-412) Hypothetical protein HI1011
           {Haemophilus influenzae [TaxId: 727]}
          Length = 412

 Score = 23.5 bits (50), Expect = 7.3
 Identities = 9/31 (29%), Positives = 15/31 (48%)

Query: 18  GHVVKWLGEQAEAMGVEIYPGIPASEVLYHG 48
             VV+ LG     +G +I PG+P  + +   
Sbjct: 358 SIVVQELGFTGFHIGKQIAPGVPWLKAVEED 388


>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium
          falciparum [TaxId: 5833]}
          Length = 117

 Score = 22.8 bits (48), Expect = 9.5
 Identities = 5/35 (14%), Positives = 11/35 (31%)

Query: 19 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVK 53
           V+  L    +   + I       E+    D ++ 
Sbjct: 64 SVINVLENDMKKNNINIVTFADVVEIKKVSDKNLS 98


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.137    0.421 

Gapped
Lambda     K      H
   0.267   0.0476    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 387,910
Number of extensions: 15824
Number of successful extensions: 44
Number of sequences better than 10.0: 1
Number of HSP's gapped: 44
Number of HSP's successfully gapped: 11
Length of query: 101
Length of database: 2,407,596
Length adjustment: 62
Effective length of query: 39
Effective length of database: 1,556,336
Effective search space: 60697104
Effective search space used: 60697104
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.5 bits)