BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9488
(114 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|189234128|ref|XP_969235.2| PREDICTED: similar to elongin b [Tribolium castaneum]
gi|270002530|gb|EEZ98977.1| hypothetical protein TcasGA2_TC004834 [Tribolium castaneum]
Length = 117
Score = 119 bits (297), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 58/84 (69%), Positives = 69/84 (82%), Gaps = 1/84 (1%)
Query: 27 KGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQENGEFEPLE 86
+GI K+PP+DQ+LFNKDN ME+ +LQ+YGLTSA AKAQSPA VGLA R+ FE LE
Sbjct: 32 EGILKIPPQDQQLFNKDNTIMEDDRMLQDYGLTSATAKAQSPATVGLAVRESVDTFEHLE 91
Query: 87 LTPYSSPPDLPYVMKASEQANGQE 110
LTPYS+PPDLP VMK S++ANGQE
Sbjct: 92 LTPYSAPPDLPDVMK-SQEANGQE 114
>gi|307199861|gb|EFN80258.1| Transcription elongation factor B polypeptide 2 [Harpegnathos
saltator]
Length = 106
Score = 118 bits (295), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 57/87 (65%), Positives = 69/87 (79%), Gaps = 1/87 (1%)
Query: 24 RYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQENGEFE 83
+ +GI KVPP +Q+LFNKDN M + L +YGLTS AKAQ PALVGLA RQ+NG+FE
Sbjct: 18 KMIEGILKVPPVNQQLFNKDNVVMSDSKFLSDYGLTSLTAKAQCPALVGLALRQDNGQFE 77
Query: 84 PLELTPYSSPPDLPYVMKASEQANGQE 110
PLE+TP+S PPDLP VMK S++ANGQE
Sbjct: 78 PLEMTPFSLPPDLPDVMK-SQEANGQE 103
>gi|332373726|gb|AEE62004.1| unknown [Dendroctonus ponderosae]
Length = 117
Score = 117 bits (294), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 55/84 (65%), Positives = 69/84 (82%), Gaps = 1/84 (1%)
Query: 27 KGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQENGEFEPLE 86
+GI K+PP++Q+LFNKDN ME+ ++LQEYGL S AKAQSPA +GLA R +NG FE L+
Sbjct: 32 EGILKIPPQNQQLFNKDNTVMEDAHMLQEYGLNSTSAKAQSPATIGLAIRDDNGSFEALD 91
Query: 87 LTPYSSPPDLPYVMKASEQANGQE 110
L PYS+PPDLP VMK S++ANGQE
Sbjct: 92 LVPYSAPPDLPDVMK-SQEANGQE 114
>gi|340713162|ref|XP_003395116.1| PREDICTED: transcription elongation factor B polypeptide 2-like
[Bombus terrestris]
Length = 117
Score = 117 bits (293), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 57/87 (65%), Positives = 69/87 (79%), Gaps = 1/87 (1%)
Query: 24 RYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQENGEFE 83
+ +GI K+PP +Q+LFNKDN M +G L +YGLTSA AK Q PALVGLA RQENG+FE
Sbjct: 29 KIIEGILKIPPVNQQLFNKDNVPMSDGKFLSDYGLTSATAKPQCPALVGLAVRQENGQFE 88
Query: 84 PLELTPYSSPPDLPYVMKASEQANGQE 110
LE+TP+S PPDLP VMK S++ANGQE
Sbjct: 89 ALEMTPFSLPPDLPDVMK-SQEANGQE 114
>gi|383865999|ref|XP_003708459.1| PREDICTED: transcription elongation factor B polypeptide 2-like
[Megachile rotundata]
Length = 114
Score = 115 bits (287), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 55/87 (63%), Positives = 68/87 (78%), Gaps = 1/87 (1%)
Query: 24 RYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQENGEFE 83
+ +GI K+PP +Q+LFNKDN M + L +YGLTSA AKAQ PALVGLA RQENG+FE
Sbjct: 29 KIIEGILKIPPVNQQLFNKDNVVMSDSKFLSDYGLTSATAKAQCPALVGLAVRQENGQFE 88
Query: 84 PLELTPYSSPPDLPYVMKASEQANGQE 110
LE+TP+S PPDLP VMK S+++N QE
Sbjct: 89 TLEMTPFSLPPDLPDVMK-SQESNSQE 114
>gi|350417093|ref|XP_003491253.1| PREDICTED: transcription elongation factor B polypeptide 2-like
[Bombus impatiens]
Length = 117
Score = 115 bits (287), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 56/87 (64%), Positives = 68/87 (78%), Gaps = 1/87 (1%)
Query: 24 RYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQENGEFE 83
+ +GI K+PP +Q+LFNKDN M + L +YGLTSA AK Q PALVGLA RQENG+FE
Sbjct: 29 KIIEGILKIPPVNQQLFNKDNVPMSDSKFLSDYGLTSATAKPQCPALVGLAVRQENGQFE 88
Query: 84 PLELTPYSSPPDLPYVMKASEQANGQE 110
LE+TP+S PPDLP VMK S++ANGQE
Sbjct: 89 ALEMTPFSLPPDLPDVMK-SQEANGQE 114
>gi|332024064|gb|EGI64281.1| Transcription elongation factor B polypeptide 2 [Acromyrmex
echinatior]
Length = 112
Score = 115 bits (287), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 56/87 (64%), Positives = 69/87 (79%), Gaps = 1/87 (1%)
Query: 24 RYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQENGEFE 83
+ +GI KVPP +Q+LFNKDN M + LQ+YGLTS+ AKAQ PALVGLA RQ +G+FE
Sbjct: 24 KMIEGIMKVPPANQQLFNKDNLLMSDNKTLQDYGLTSSTAKAQCPALVGLALRQPDGQFE 83
Query: 84 PLELTPYSSPPDLPYVMKASEQANGQE 110
PLE+TP+S PPDLP VMK S++ NGQE
Sbjct: 84 PLEMTPFSLPPDLPDVMK-SQENNGQE 109
>gi|357627167|gb|EHJ76942.1| hypothetical protein KGM_08943 [Danaus plexippus]
Length = 114
Score = 113 bits (282), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 57/86 (66%), Positives = 67/86 (77%), Gaps = 1/86 (1%)
Query: 27 KGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQENGEFEPLE 86
+GI KV P Q LFNKD++ M++ L EYGLTSA AKAQ PA +GLA R+ENGEFE LE
Sbjct: 27 EGILKVAPPSQMLFNKDSQLMDDDKTLAEYGLTSATAKAQCPAPIGLALRKENGEFEALE 86
Query: 87 LTPYSSPPDLPYVMKASEQANGQENI 112
LTPYSSPPDLP VMK S++ NGQE +
Sbjct: 87 LTPYSSPPDLPDVMK-SQETNGQEQM 111
>gi|66507736|ref|XP_623908.1| PREDICTED: transcription elongation factor B polypeptide 2 [Apis
mellifera]
gi|380020921|ref|XP_003694324.1| PREDICTED: transcription elongation factor B polypeptide 2-like
[Apis florea]
Length = 117
Score = 112 bits (281), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 54/87 (62%), Positives = 67/87 (77%), Gaps = 1/87 (1%)
Query: 24 RYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQENGEFE 83
+ +GI K+ P +Q+LFNKDN M + L +YGLTSA AK Q PALVGLA RQ+NG+FE
Sbjct: 29 KIIEGILKISPVNQQLFNKDNVLMSDSKFLSDYGLTSATAKPQCPALVGLAIRQDNGQFE 88
Query: 84 PLELTPYSSPPDLPYVMKASEQANGQE 110
PLE+TP+S PPDLP VMK S++ NGQE
Sbjct: 89 PLEMTPFSLPPDLPDVMK-SQETNGQE 114
>gi|17738069|ref|NP_524416.1| elongin B [Drosophila melanogaster]
gi|194899742|ref|XP_001979417.1| GG15357 [Drosophila erecta]
gi|195353959|ref|XP_002043469.1| GM23182 [Drosophila sechellia]
gi|195569429|ref|XP_002102712.1| GD20055 [Drosophila simulans]
gi|2780363|dbj|BAA24286.1| Elongin B [Drosophila melanogaster]
gi|10726654|gb|AAG22163.1| elongin B [Drosophila melanogaster]
gi|190651120|gb|EDV48375.1| GG15357 [Drosophila erecta]
gi|194127610|gb|EDW49653.1| GM23182 [Drosophila sechellia]
gi|194198639|gb|EDX12215.1| GD20055 [Drosophila simulans]
gi|220952218|gb|ACL88652.1| Elongin-B-PA [synthetic construct]
Length = 118
Score = 112 bits (279), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 51/89 (57%), Positives = 68/89 (76%)
Query: 24 RYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQENGEFE 83
R +GI KV P DQ+L+N+DN ME+ + LQ+YG+T + AKAQ+PA +GL FR E G+FE
Sbjct: 29 RMIEGILKVQPVDQRLYNQDNDVMEDDSTLQDYGVTVSTAKAQAPAQLGLTFRNEVGDFE 88
Query: 84 PLELTPYSSPPDLPYVMKASEQANGQENI 112
L++TPYS+PPDLP VMK E +NGQE +
Sbjct: 89 TLDMTPYSAPPDLPEVMKNQEASNGQEQV 117
>gi|195498227|ref|XP_002096433.1| GE25062 [Drosophila yakuba]
gi|194182534|gb|EDW96145.1| GE25062 [Drosophila yakuba]
Length = 118
Score = 111 bits (278), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 51/89 (57%), Positives = 68/89 (76%)
Query: 24 RYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQENGEFE 83
R +GI KV P DQ+L+N+DN ME+ + LQ+YG+T + AKAQ+PA +GL FR E G+FE
Sbjct: 29 RMIEGILKVQPVDQRLYNQDNDVMEDESTLQDYGVTVSTAKAQAPAQLGLTFRNEVGDFE 88
Query: 84 PLELTPYSSPPDLPYVMKASEQANGQENI 112
L++TPYS+PPDLP VMK E +NGQE +
Sbjct: 89 TLDMTPYSAPPDLPEVMKNQEASNGQEQV 117
>gi|194744162|ref|XP_001954564.1| GF18332 [Drosophila ananassae]
gi|190627601|gb|EDV43125.1| GF18332 [Drosophila ananassae]
Length = 118
Score = 111 bits (277), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 51/89 (57%), Positives = 68/89 (76%)
Query: 24 RYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQENGEFE 83
R +GI KV P DQ+L+N+DN ME+ + LQ+YG+T + AKAQ+PA +GL FR E G+FE
Sbjct: 29 RMIEGIVKVQPVDQRLYNQDNDVMEDESTLQDYGVTVSTAKAQAPAQLGLTFRNELGDFE 88
Query: 84 PLELTPYSSPPDLPYVMKASEQANGQENI 112
L++TPYS+PPDLP VMK E +NGQE +
Sbjct: 89 TLDMTPYSAPPDLPEVMKNQEASNGQEQV 117
>gi|307172261|gb|EFN63766.1| Transcription elongation factor B polypeptide 2 [Camponotus
floridanus]
Length = 106
Score = 110 bits (276), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 55/87 (63%), Positives = 67/87 (77%), Gaps = 1/87 (1%)
Query: 24 RYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQENGEFE 83
+ +GI KVPP +Q+LFNKD M + LQ+YGLTS AKAQ PALVGLA RQ +G+FE
Sbjct: 18 KMIEGILKVPPANQQLFNKDYLPMSDNKALQDYGLTSLTAKAQCPALVGLALRQSDGQFE 77
Query: 84 PLELTPYSSPPDLPYVMKASEQANGQE 110
PLE+TP+S PPDLP VMK S++ NGQE
Sbjct: 78 PLEMTPFSLPPDLPDVMK-SQENNGQE 103
>gi|157103157|ref|XP_001647846.1| elongin b [Aedes aegypti]
gi|108884678|gb|EAT48903.1| AAEL000084-PA [Aedes aegypti]
Length = 118
Score = 110 bits (275), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 50/89 (56%), Positives = 68/89 (76%)
Query: 24 RYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQENGEFE 83
R +GI KVPP+DQ+L+NKDN+ M++ LQ+ G+T + AKAQ PA +GLA R+ +G+FE
Sbjct: 29 RMIEGIIKVPPRDQRLYNKDNQLMDDDRTLQDCGITVSTAKAQCPAQLGLAIRENSGDFE 88
Query: 84 PLELTPYSSPPDLPYVMKASEQANGQENI 112
L+LTPYS PPDLP VMK + ANGQ+ +
Sbjct: 89 QLDLTPYSLPPDLPDVMKNQDAANGQDQL 117
>gi|195113023|ref|XP_002001069.1| GI22177 [Drosophila mojavensis]
gi|193917663|gb|EDW16530.1| GI22177 [Drosophila mojavensis]
Length = 152
Score = 110 bits (275), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 51/89 (57%), Positives = 66/89 (74%)
Query: 24 RYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQENGEFE 83
R +GI KV P DQ+L+N+DN ME+ LQ+YG+T + AKAQ+PA +GL R E G+FE
Sbjct: 63 RMIEGILKVLPSDQRLYNQDNDVMEDDQTLQDYGVTVSTAKAQAPAQLGLTCRNEAGDFE 122
Query: 84 PLELTPYSSPPDLPYVMKASEQANGQENI 112
LE+TPYS+PPDLP VMK E +NGQE +
Sbjct: 123 SLEITPYSAPPDLPEVMKNQEASNGQEQV 151
>gi|345494889|ref|XP_001604175.2| PREDICTED: transcription elongation factor B polypeptide 2-like
[Nasonia vitripennis]
Length = 117
Score = 110 bits (275), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 52/87 (59%), Positives = 66/87 (75%), Gaps = 1/87 (1%)
Query: 24 RYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQENGEFE 83
+ +GI K+PP +Q+LFNKDN M + L +YGL+SA AKAQ PA++GLA RQ+NG+FE
Sbjct: 29 KIIEGILKIPPGNQQLFNKDNLLMSDNKCLSDYGLSSATAKAQCPAVIGLAIRQDNGQFE 88
Query: 84 PLELTPYSSPPDLPYVMKASEQANGQE 110
LE+TP+S PPDLP VMK E NGQE
Sbjct: 89 QLEMTPFSLPPDLPEVMKTQE-TNGQE 114
>gi|195158921|ref|XP_002020332.1| GL13928 [Drosophila persimilis]
gi|198449961|ref|XP_002136995.1| GA26968 [Drosophila pseudoobscura pseudoobscura]
gi|194117101|gb|EDW39144.1| GL13928 [Drosophila persimilis]
gi|198130830|gb|EDY67553.1| GA26968 [Drosophila pseudoobscura pseudoobscura]
Length = 118
Score = 109 bits (273), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 51/89 (57%), Positives = 67/89 (75%)
Query: 24 RYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQENGEFE 83
R +GI KV DQ+L+N+DN ME+ + LQEYG+T + AKAQSPA +GL FR + G+FE
Sbjct: 29 RMIEGILKVQVVDQRLYNQDNDIMEDDSTLQEYGVTVSTAKAQSPAQLGLTFRNDMGDFE 88
Query: 84 PLELTPYSSPPDLPYVMKASEQANGQENI 112
L++TPYS+PPDLP VMK E +NGQE +
Sbjct: 89 TLDMTPYSAPPDLPEVMKNQEASNGQEAV 117
>gi|195055083|ref|XP_001994450.1| GH16190 [Drosophila grimshawi]
gi|193892213|gb|EDV91079.1| GH16190 [Drosophila grimshawi]
Length = 118
Score = 109 bits (273), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 50/89 (56%), Positives = 67/89 (75%)
Query: 24 RYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQENGEFE 83
R +GI KVPP DQ+L+N+DN ME+ LQ+YG+T + AKAQ+PA +GL R E G+F+
Sbjct: 29 RMIEGILKVPPNDQRLYNQDNDVMEDEQTLQDYGVTVSTAKAQAPAQLGLTCRNELGDFD 88
Query: 84 PLELTPYSSPPDLPYVMKASEQANGQENI 112
L++TPYS+PPDLP VMK E +NGQE +
Sbjct: 89 TLDITPYSAPPDLPEVMKNQEASNGQEQV 117
>gi|195391051|ref|XP_002054179.1| GJ24297 [Drosophila virilis]
gi|194152265|gb|EDW67699.1| GJ24297 [Drosophila virilis]
Length = 118
Score = 109 bits (272), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 50/89 (56%), Positives = 66/89 (74%)
Query: 24 RYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQENGEFE 83
R +GI KV P DQ+L+N+DN ME+ LQ+YG+T + AKAQ+PA +GL R E G+FE
Sbjct: 29 RMIEGILKVSPSDQRLYNQDNDVMEDDQTLQDYGVTVSTAKAQAPAQLGLTCRNEMGDFE 88
Query: 84 PLELTPYSSPPDLPYVMKASEQANGQENI 112
L++TPYS+PPDLP VMK E +NGQE +
Sbjct: 89 TLDITPYSAPPDLPEVMKNQEASNGQEQV 117
>gi|170032528|ref|XP_001844133.1| transcription elongation factor B polypeptide 2 [Culex
quinquefasciatus]
gi|167872603|gb|EDS35986.1| transcription elongation factor B polypeptide 2 [Culex
quinquefasciatus]
Length = 114
Score = 108 bits (270), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 53/97 (54%), Positives = 68/97 (70%)
Query: 16 TLLYDKRPRYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAF 75
T L + R +GI KVP DQ+L+NKDN+ ME+ LQ+ G+T AKAQ PA +GLA
Sbjct: 17 TTLVGELKRMIEGIVKVPLADQRLYNKDNQLMEDDRTLQDCGITVQTAKAQCPAQLGLAV 76
Query: 76 RQENGEFEPLELTPYSSPPDLPYVMKASEQANGQENI 112
R+ NG+FE L+LTPYS PPDLP VMK + ANGQ+ +
Sbjct: 77 RENNGDFEQLDLTPYSLPPDLPDVMKNQDAANGQDQL 113
>gi|195449717|ref|XP_002072193.1| GK22717 [Drosophila willistoni]
gi|194168278|gb|EDW83179.1| GK22717 [Drosophila willistoni]
Length = 118
Score = 108 bits (270), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 49/89 (55%), Positives = 68/89 (76%)
Query: 24 RYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQENGEFE 83
R +GI KV P DQ+L+N+DN ME+ + LQ+YG+T + AKAQ+PA +GL FR + G+FE
Sbjct: 29 RMIEGILKVQPIDQRLYNQDNDIMEDESTLQDYGVTVSTAKAQAPAQLGLTFRNDMGDFE 88
Query: 84 PLELTPYSSPPDLPYVMKASEQANGQENI 112
L+++PYS+PPDLP VMK E +NGQE +
Sbjct: 89 TLDMSPYSAPPDLPEVMKNQEASNGQEQV 117
>gi|347969371|ref|XP_312844.5| AGAP003154-PA [Anopheles gambiae str. PEST]
gi|333468494|gb|EAA08308.5| AGAP003154-PA [Anopheles gambiae str. PEST]
Length = 117
Score = 107 bits (268), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 52/86 (60%), Positives = 65/86 (75%), Gaps = 1/86 (1%)
Query: 27 KGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQENGEFEPLE 86
+GI KVPP+DQ+L+NKDN M++ LQ+ G+T AKAQ PA +GLA R ENG+FE LE
Sbjct: 32 EGILKVPPRDQRLYNKDNMLMDDDKTLQDCGITVVTAKAQCPAQLGLAVR-ENGDFESLE 90
Query: 87 LTPYSSPPDLPYVMKASEQANGQENI 112
LTPYS PPDLP VMK + ANGQ+ +
Sbjct: 91 LTPYSLPPDLPDVMKNQDTANGQDQL 116
>gi|347969373|ref|XP_003436412.1| AGAP003154-PB [Anopheles gambiae str. PEST]
gi|333468495|gb|EGK96969.1| AGAP003154-PB [Anopheles gambiae str. PEST]
Length = 113
Score = 107 bits (267), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 52/86 (60%), Positives = 65/86 (75%), Gaps = 1/86 (1%)
Query: 27 KGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQENGEFEPLE 86
+GI KVPP+DQ+L+NKDN M++ LQ+ G+T AKAQ PA +GLA R ENG+FE LE
Sbjct: 28 EGILKVPPRDQRLYNKDNMLMDDDKTLQDCGITVVTAKAQCPAQLGLAVR-ENGDFESLE 86
Query: 87 LTPYSSPPDLPYVMKASEQANGQENI 112
LTPYS PPDLP VMK + ANGQ+ +
Sbjct: 87 LTPYSLPPDLPDVMKNQDTANGQDQL 112
>gi|289740829|gb|ADD19162.1| RNA polymerase II transcription elongation factor elongin [Glossina
morsitans morsitans]
Length = 118
Score = 107 bits (267), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 50/89 (56%), Positives = 66/89 (74%)
Query: 24 RYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQENGEFE 83
R +GI KV P DQ+LFN +N M++ LQ+ G+T + AKAQ+PA +GL FR ++G+FE
Sbjct: 29 RMLEGILKVRPLDQRLFNIENDVMDDETTLQDNGITVSTAKAQAPAQLGLVFRTDDGDFE 88
Query: 84 PLELTPYSSPPDLPYVMKASEQANGQENI 112
PLE+T YSSPPDLP VMK E ANG+E +
Sbjct: 89 PLEITSYSSPPDLPEVMKNQEAANGKEQV 117
>gi|312378177|gb|EFR24819.1| hypothetical protein AND_27355 [Anopheles darlingi]
Length = 111
Score = 102 bits (253), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 56/97 (57%), Positives = 69/97 (71%), Gaps = 3/97 (3%)
Query: 16 TLLYDKRPRYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAF 75
TL+ D + R +GI KVPP DQ+LFNKD ME+ LQ+ G+T A AKAQ PA +GLA
Sbjct: 17 TLVSDLK-RMIEGIIKVPPHDQQLFNKDTI-MEDEKTLQDCGITVATAKAQCPAQLGLAI 74
Query: 76 RQENGEFEPLELTPYSSPPDLPYVMKASEQANGQENI 112
R+ +G FE LELTPYS PPDLP VMK + ANGQ+ +
Sbjct: 75 RK-DGLFEQLELTPYSLPPDLPEVMKNQDTANGQDQL 110
>gi|240849159|ref|NP_001155654.1| transcription elongation factor B polypeptide 2 [Acyrthosiphon
pisum]
gi|239799375|dbj|BAH70611.1| ACYPI006158 [Acyrthosiphon pisum]
Length = 116
Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 50/94 (53%), Positives = 66/94 (70%), Gaps = 2/94 (2%)
Query: 17 LLYDKRPRYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFR 76
+L ++ + I KV P +Q+L+ KD M+E L E GL S +AKAQSPA +GLA +
Sbjct: 22 ILVNELKKIIGCIIKVAPANQQLYYKDEI-MDETKTLSECGLNSTIAKAQSPATIGLALK 80
Query: 77 QENGEFEPLELTPYSSPPDLPYVMKASEQANGQE 110
ENGEFEPLE+ PYS PP+LPYVMK +++ NGQE
Sbjct: 81 MENGEFEPLEMVPYSLPPELPYVMK-NQETNGQE 113
>gi|321464062|gb|EFX75073.1| hypothetical protein DAPPUDRAFT_226482 [Daphnia pulex]
Length = 120
Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 44/81 (54%), Positives = 60/81 (74%), Gaps = 1/81 (1%)
Query: 27 KGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQENGEFEPLE 86
+GITK+ P+ Q+LF KD+R ME+ L +YGL S A+AQSPA + LA+R +NGEFE ++
Sbjct: 36 QGITKIAPESQRLF-KDDRIMEDNRCLADYGLISTTARAQSPASLSLAYRLDNGEFETVD 94
Query: 87 LTPYSSPPDLPYVMKASEQAN 107
+TP SSPP+LP VMK E +
Sbjct: 95 ITPLSSPPELPDVMKGQEATH 115
>gi|242022043|ref|XP_002431451.1| transcription elongation factor B polypeptide, putative [Pediculus
humanus corporis]
gi|212516739|gb|EEB18713.1| transcription elongation factor B polypeptide, putative [Pediculus
humanus corporis]
Length = 112
Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/91 (56%), Positives = 65/91 (71%), Gaps = 3/91 (3%)
Query: 24 RYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQE-NGEF 82
+ +GI K+ P +Q+L+ KDN+ M++ LQEYGL VAKAQ PA +GLA R E GEF
Sbjct: 24 KMIEGILKISPDNQQLY-KDNQIMDDDKTLQEYGLIPNVAKAQCPAPLGLALRLEPEGEF 82
Query: 83 EPLELTPYSSPPDLPYVMKASEQANGQENIT 113
EPL++TP SSPPDLP VMK E NGQE++
Sbjct: 83 EPLDITPLSSPPDLPDVMKVPE-TNGQESVA 112
>gi|427786211|gb|JAA58557.1| Putative rna polymerase ii transcription elongation factor
elongin/siii subunit elongin b [Rhipicephalus
pulchellus]
Length = 118
Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 47/86 (54%), Positives = 64/86 (74%), Gaps = 2/86 (2%)
Query: 28 GITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQ-ENGEFEPLE 86
GITKV P++Q L+ KD++ M++ +L EYGL S+ AKAQ+PA VGLAFR + G+FEPLE
Sbjct: 33 GITKVAPENQVLY-KDDQCMDDNKVLTEYGLNSSTAKAQAPATVGLAFRDPDTGKFEPLE 91
Query: 87 LTPYSSPPDLPYVMKASEQANGQENI 112
+TP SSPP+LP VMK E ++ +
Sbjct: 92 VTPLSSPPELPDVMKPPESQTHEQTV 117
>gi|405976181|gb|EKC40697.1| Transcription elongation factor B polypeptide 2 [Crassostrea gigas]
Length = 115
Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 47/90 (52%), Positives = 65/90 (72%), Gaps = 3/90 (3%)
Query: 27 KGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQENGEFEPLE 86
+GI K+ P+DQKLF KD++ +++ L +YG T A A+AQ+PA +GLA +Q++GEFE LE
Sbjct: 27 EGILKIRPEDQKLF-KDDQPLDDNKTLGDYGFTFATARAQAPATIGLACKQDDGEFEQLE 85
Query: 87 LTPYSSPPDLPYVMKA--SEQANGQENITS 114
+TP SSPP+LP VMK S A+ QE S
Sbjct: 86 ITPLSSPPELPDVMKQQDSTSAHAQEQTAS 115
>gi|325302852|tpg|DAA34450.1| TPA_inf: RNA polymerase II transcription elongation factor
[Amblyomma variegatum]
Length = 109
Score = 91.7 bits (226), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 47/86 (54%), Positives = 64/86 (74%), Gaps = 2/86 (2%)
Query: 28 GITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQ-ENGEFEPLE 86
GITKV P++Q L+ KD++ M++ +L EYGL S+ AKAQ+PA VGLAFR + G+FEPLE
Sbjct: 24 GITKVAPENQVLY-KDDQCMDDNKVLTEYGLNSSTAKAQAPATVGLAFRDPDTGKFEPLE 82
Query: 87 LTPYSSPPDLPYVMKASEQANGQENI 112
+TP SSPP+LP VMK E ++ +
Sbjct: 83 VTPLSSPPELPDVMKPPESQAHEQTV 108
>gi|346470089|gb|AEO34889.1| hypothetical protein [Amblyomma maculatum]
Length = 118
Score = 91.7 bits (226), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 47/86 (54%), Positives = 64/86 (74%), Gaps = 2/86 (2%)
Query: 28 GITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQ-ENGEFEPLE 86
GITKV P++Q L+ KD++ M++ +L EYGL S+ AKAQ+PA VGLAFR + G+FEPLE
Sbjct: 33 GITKVAPENQVLY-KDDQCMDDNKVLTEYGLNSSTAKAQAPATVGLAFRDPDTGKFEPLE 91
Query: 87 LTPYSSPPDLPYVMKASEQANGQENI 112
+TP SSPP+LP VMK E ++ +
Sbjct: 92 VTPLSSPPELPDVMKPPESQVHEQTV 117
>gi|260821143|ref|XP_002605893.1| hypothetical protein BRAFLDRAFT_87435 [Branchiostoma floridae]
gi|229291229|gb|EEN61903.1| hypothetical protein BRAFLDRAFT_87435 [Branchiostoma floridae]
Length = 118
Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 46/84 (54%), Positives = 60/84 (71%), Gaps = 1/84 (1%)
Query: 27 KGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQENGEFEPLE 86
+GI K PP+DQ+L+ KD+ +E+ L + G TS AKAQSPA VGLAFRQ++GEFE L
Sbjct: 32 EGIMKKPPEDQRLY-KDDVILEDNKTLGDCGFTSQSAKAQSPATVGLAFRQDDGEFENLF 90
Query: 87 LTPYSSPPDLPYVMKASEQANGQE 110
+ P S+PP+LP VMK EQ Q+
Sbjct: 91 VAPLSTPPELPDVMKPQEQPGTQD 114
>gi|291228348|ref|XP_002734124.1| PREDICTED: transcription elongation factor B (SIII), polypeptide
2-like [Saccoglossus kowalevskii]
Length = 120
Score = 87.4 bits (215), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 43/82 (52%), Positives = 60/82 (73%), Gaps = 1/82 (1%)
Query: 27 KGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQENGEFEPLE 86
+GITK PP+DQ+L +KD +E+ L + G TS+ A+AQ+PA VGLAF++ +FEPLE
Sbjct: 32 EGITKRPPEDQRL-HKDELILEDTKTLGDCGFTSSTARAQAPATVGLAFKEGEEDFEPLE 90
Query: 87 LTPYSSPPDLPYVMKASEQANG 108
+TPYS+PP+LP VMK E +
Sbjct: 91 VTPYSNPPELPDVMKPQESSTS 112
>gi|241174244|ref|XP_002410989.1| RNA polymerase II transcription elongation factor, putative [Ixodes
scapularis]
gi|215495076|gb|EEC04717.1| RNA polymerase II transcription elongation factor, putative [Ixodes
scapularis]
Length = 118
Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 45/86 (52%), Positives = 63/86 (73%), Gaps = 2/86 (2%)
Query: 28 GITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQ-ENGEFEPLE 86
GITKV P++Q L+ KD + M++ +L EYGL S+ AKAQ+PA VGLAFR ++G+FE L+
Sbjct: 33 GITKVAPENQMLY-KDEQCMDDNKMLTEYGLNSSTAKAQAPATVGLAFRDLDSGKFENLD 91
Query: 87 LTPYSSPPDLPYVMKASEQANGQENI 112
+TP SSPP+LP VMK E ++ +
Sbjct: 92 VTPLSSPPELPDVMKPPESQAHEQTV 117
>gi|442759629|gb|JAA71973.1| Putative rna polymerase ii transcription elongation factor [Ixodes
ricinus]
Length = 119
Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/86 (52%), Positives = 63/86 (73%), Gaps = 2/86 (2%)
Query: 28 GITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQ-ENGEFEPLE 86
GITKV P++Q L+ KD + M++ +L EYGL S+ AKAQ+PA VGLAFR ++G+FE L+
Sbjct: 34 GITKVAPENQMLY-KDEQCMDDNKMLTEYGLNSSTAKAQAPATVGLAFRDPDSGKFENLD 92
Query: 87 LTPYSSPPDLPYVMKASEQANGQENI 112
+TP SSPP+LP VMK E ++ +
Sbjct: 93 VTPLSSPPELPDVMKPPESQAHEQTV 118
>gi|196010778|ref|XP_002115253.1| hypothetical protein TRIADDRAFT_59247 [Trichoplax adhaerens]
gi|190582024|gb|EDV22098.1| hypothetical protein TRIADDRAFT_59247 [Trichoplax adhaerens]
Length = 152
Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 39/74 (52%), Positives = 55/74 (74%), Gaps = 1/74 (1%)
Query: 28 GITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQENGEFEPLEL 87
G+TKV P+DQ+LF K + +++ LL + G +++ A+AQ PA +GLAFR E+GEFEPL +
Sbjct: 64 GVTKVNPEDQRLF-KGDEILDDSKLLSDCGFSTSTARAQEPAFLGLAFRGEDGEFEPLNI 122
Query: 88 TPYSSPPDLPYVMK 101
P + PPDLP VMK
Sbjct: 123 APLTQPPDLPEVMK 136
>gi|225718568|gb|ACO15130.1| Transcription elongation factor B polypeptide 2 [Caligus clemensi]
Length = 120
Score = 85.5 bits (210), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 45/89 (50%), Positives = 61/89 (68%), Gaps = 1/89 (1%)
Query: 27 KGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQENGE-FEPL 85
+GITK P DQ+LFNK+++ ME+ L +YGL + VAKAQ PA VGLA+R +E L
Sbjct: 32 EGITKRSPVDQRLFNKEDQVMEDDKTLSDYGLNANVAKAQYPAEVGLAYRGLGSNVYEEL 91
Query: 86 ELTPYSSPPDLPYVMKASEQANGQENITS 114
+ TPYSSPP+LP MK ++A+ E T+
Sbjct: 92 KKTPYSSPPELPDAMKPGQEASSAETATA 120
>gi|225709360|gb|ACO10526.1| Transcription elongation factor B polypeptide 2 [Caligus
rogercresseyi]
Length = 120
Score = 85.5 bits (210), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 44/89 (49%), Positives = 61/89 (68%), Gaps = 1/89 (1%)
Query: 27 KGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQ-ENGEFEPL 85
+GITK P +Q+LFNKD++ ME+ L +YGL + VAKAQ PA VGLA+R + +E L
Sbjct: 32 EGITKRSPSEQRLFNKDDQVMEDDKTLSDYGLNANVAKAQYPAEVGLAYRDPGSNAYEDL 91
Query: 86 ELTPYSSPPDLPYVMKASEQANGQENITS 114
+ TPYSSPP+LP MK ++ + E T+
Sbjct: 92 KKTPYSSPPELPDAMKPGQETSSVETATA 120
>gi|45360579|ref|NP_988962.1| transcription elongation factor B (SIII), polypeptide 2 (18kDa,
elongin B) [Xenopus (Silurana) tropicalis]
gi|38174449|gb|AAH61439.1| hypothetical protein MGC76322 [Xenopus (Silurana) tropicalis]
gi|54038647|gb|AAH84191.1| hypothetical protein MGC76322 [Xenopus (Silurana) tropicalis]
Length = 119
Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/93 (46%), Positives = 61/93 (65%), Gaps = 2/93 (2%)
Query: 16 TLLYDKRPRYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAF 75
T +Y+ + R +GI K PP+DQKL+ KD++ +++ L + G TS A+ Q+PA VGLAF
Sbjct: 22 TTVYELK-RIVEGILKRPPEDQKLY-KDDQVLDDNKTLGDCGFTSQTARPQAPATVGLAF 79
Query: 76 RQENGEFEPLELTPYSSPPDLPYVMKASEQANG 108
R FEPL + P+SSPP+LP VMK E +
Sbjct: 80 RSSGDSFEPLRVDPFSSPPELPDVMKPQETSGS 112
>gi|148232750|ref|NP_001080414.1| transcription elongation factor B (SIII), polypeptide 2 (18kDa,
elongin B) [Xenopus laevis]
gi|33991837|gb|AAH56504.1| Tceb2-prov protein [Xenopus laevis]
Length = 119
Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 43/93 (46%), Positives = 61/93 (65%), Gaps = 2/93 (2%)
Query: 16 TLLYDKRPRYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAF 75
T +Y+ + R +GI K PP+DQKL+ KD++ +++ L + G TS A+ Q+PA VGLAF
Sbjct: 22 TTVYELK-RIVEGILKRPPEDQKLY-KDDQLLDDNKTLGDCGFTSQTARPQAPATVGLAF 79
Query: 76 RQENGEFEPLELTPYSSPPDLPYVMKASEQANG 108
R FEPL + P+SSPP+LP VMK E +
Sbjct: 80 RSSGDSFEPLRVEPFSSPPELPDVMKPQETSGS 112
>gi|115638792|ref|XP_001177216.1| PREDICTED: transcription elongation factor B polypeptide 2-like
[Strongylocentrotus purpuratus]
Length = 120
Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 42/82 (51%), Positives = 60/82 (73%), Gaps = 2/82 (2%)
Query: 24 RYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQ-ENGEF 82
R +GITK P+DQ+L+ KD +++ L + GLTS AKAQ+PA++GLAFR+ E +F
Sbjct: 29 RIIEGITKRGPEDQQLY-KDGDTLDDTKTLGDCGLTSNTAKAQAPAMLGLAFRECEGADF 87
Query: 83 EPLELTPYSSPPDLPYVMKASE 104
E L +TPYS+PP+LP VMK ++
Sbjct: 88 EQLNITPYSNPPELPDVMKPTD 109
>gi|225713928|gb|ACO12810.1| Transcription elongation factor B polypeptide 2 [Lepeophtheirus
salmonis]
gi|290560972|gb|ADD37888.1| Transcription elongation factor B polypeptide 2 [Lepeophtheirus
salmonis]
Length = 120
Score = 81.3 bits (199), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 42/76 (55%), Positives = 54/76 (71%), Gaps = 1/76 (1%)
Query: 27 KGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQE-NGEFEPL 85
+GITK P DQ+LFNKD++ ME+ L +YGL + VAKAQ PA VGLA++ +E L
Sbjct: 32 EGITKRSPGDQRLFNKDDQIMEDDKSLSDYGLNANVAKAQFPAEVGLAYKDSATNTYEDL 91
Query: 86 ELTPYSSPPDLPYVMK 101
+ TPYSSPP+LP MK
Sbjct: 92 KKTPYSSPPELPDAMK 107
>gi|225714308|gb|ACO13000.1| Transcription elongation factor B polypeptide 2 [Lepeophtheirus
salmonis]
Length = 120
Score = 81.3 bits (199), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 42/76 (55%), Positives = 54/76 (71%), Gaps = 1/76 (1%)
Query: 27 KGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQE-NGEFEPL 85
+GITK P DQ+LFNKD++ ME+ L +YGL + VAKAQ PA VGLA++ +E L
Sbjct: 32 EGITKRSPGDQRLFNKDDQIMEDDESLSDYGLNANVAKAQFPAEVGLAYKDSATNTYEDL 91
Query: 86 ELTPYSSPPDLPYVMK 101
+ TPYSSPP+LP MK
Sbjct: 92 KKTPYSSPPELPDAMK 107
>gi|443719873|gb|ELU09825.1| hypothetical protein CAPTEDRAFT_154388 [Capitella teleta]
Length = 115
Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/84 (46%), Positives = 59/84 (70%), Gaps = 1/84 (1%)
Query: 27 KGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQENGEFEPLE 86
+GITK +D +L+ KD++ +E+ L + G TS+ A+AQ+PA +GLAFR +GEFEPLE
Sbjct: 27 QGITKRDLEDIRLY-KDDQPLEDNKTLGDCGFTSSTARAQAPATIGLAFRGNDGEFEPLE 85
Query: 87 LTPYSSPPDLPYVMKASEQANGQE 110
+ S+PP+LP VM+ E + Q+
Sbjct: 86 IAALSTPPELPDVMRPQESSASQQ 109
>gi|156373216|ref|XP_001629429.1| predicted protein [Nematostella vectensis]
gi|156216429|gb|EDO37366.1| predicted protein [Nematostella vectensis]
Length = 115
Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/78 (53%), Positives = 57/78 (73%), Gaps = 2/78 (2%)
Query: 27 KGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQENGEFEPLE 86
+GI K PP+DQKLF KD++ +++ L + G T+ AKAQ+PALVGLA R+E+ EFEP+
Sbjct: 32 EGIIKRPPEDQKLF-KDDQLLDDNKTLGDCGFTNQTAKAQTPALVGLALRRED-EFEPVT 89
Query: 87 LTPYSSPPDLPYVMKASE 104
+ SSPP+LP VMK E
Sbjct: 90 IDALSSPPELPDVMKPQE 107
>gi|319401877|ref|NP_001187283.1| transcription elongation factor b polypeptide 2 [Ictalurus
punctatus]
gi|308322611|gb|ADO28443.1| transcription elongation factor b polypeptide 2 [Ictalurus
punctatus]
Length = 119
Score = 77.4 bits (189), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 58/84 (69%), Gaps = 1/84 (1%)
Query: 24 RYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQENGEFE 83
R +GI K PP+DQ+L+ KD++ +++G L + G T+ A+ Q+PA VGLAFR + FE
Sbjct: 29 RIVEGILKRPPEDQRLY-KDDQLLDDGKTLGDSGFTNQTARPQAPATVGLAFRISDDAFE 87
Query: 84 PLELTPYSSPPDLPYVMKASEQAN 107
L++ P+S+PP+LP VMK + +
Sbjct: 88 QLQVDPFSNPPELPDVMKPQDSGS 111
>gi|291413103|ref|XP_002722822.1| PREDICTED: transcription elongation factor B (SIII), polypeptide
2-like [Oryctolagus cuniculus]
Length = 217
Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/84 (46%), Positives = 57/84 (67%), Gaps = 2/84 (2%)
Query: 24 RYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQENGEFE 83
R +GI K PP +Q+L+ KD++ +++G L E G TS A+ Q+PA VGLAFR ++ FE
Sbjct: 128 RIVEGILKRPPDEQRLY-KDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFRADDA-FE 185
Query: 84 PLELTPYSSPPDLPYVMKASEQAN 107
L + P+SSPP+LP VMK + +
Sbjct: 186 ALRIEPFSSPPELPDVMKPQDSGS 209
>gi|354502873|ref|XP_003513506.1| PREDICTED: transcription elongation factor B polypeptide 2-like
[Cricetulus griseus]
Length = 121
Score = 77.0 bits (188), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/78 (50%), Positives = 56/78 (71%), Gaps = 2/78 (2%)
Query: 24 RYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQENGEFE 83
R +GI K PP++Q+L+ KD++ +++G L E G TS A+ Q+PA VGLAFR ++ FE
Sbjct: 32 RIVEGILKRPPEEQRLY-KDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFRADDA-FE 89
Query: 84 PLELTPYSSPPDLPYVMK 101
L + P+SSPP+LP VMK
Sbjct: 90 ALRIEPFSSPPELPDVMK 107
>gi|149473178|ref|XP_001511415.1| PREDICTED: transcription elongation factor B polypeptide 2-like
[Ornithorhynchus anatinus]
Length = 119
Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 42/90 (46%), Positives = 59/90 (65%), Gaps = 8/90 (8%)
Query: 24 RYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQENGEFE 83
R +GI K PP++Q+L+ KD++ +++ L E G TS A+ Q+PA VGLAFR + FE
Sbjct: 29 RIVEGILKRPPEEQRLY-KDDQLLDDTKTLGECGFTSQTARPQAPATVGLAFRAADDAFE 87
Query: 84 PLELTPYSSPPDLPYVMK-------ASEQA 106
L + P+SSPP+LP VMK A+EQA
Sbjct: 88 ALRIEPFSSPPELPDVMKPQDSGSSANEQA 117
>gi|410985339|ref|XP_003998980.1| PREDICTED: transcription elongation factor B polypeptide 2-like
[Felis catus]
Length = 118
Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/90 (47%), Positives = 60/90 (66%), Gaps = 9/90 (10%)
Query: 24 RYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQENGEFE 83
R +GI K PP +Q+L+ KD++ +++G L E G TS A+ Q+PA VGLAFR ++ FE
Sbjct: 29 RIVEGILKRPPDEQRLY-KDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFRADDA-FE 86
Query: 84 PLELTPYSSPPDLPYVMK-------ASEQA 106
L + P+SSPP+LP VMK A+EQA
Sbjct: 87 ALRIEPFSSPPELPDVMKPQDSGSSANEQA 116
>gi|392349787|ref|XP_003750469.1| PREDICTED: transcription elongation factor B polypeptide 2-like
[Rattus norvegicus]
Length = 167
Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/90 (47%), Positives = 61/90 (67%), Gaps = 9/90 (10%)
Query: 24 RYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQENGEFE 83
R +GI K PP++Q+L+ KD++ +++G L E G TS A+ Q+PA VGLAFR ++ FE
Sbjct: 78 RIVEGILKRPPEEQQLY-KDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFRADD-SFE 135
Query: 84 PLELTPYSSPPDLPYVMK-------ASEQA 106
L + P+SSPP+LP VMK A+EQA
Sbjct: 136 ALRIEPFSSPPELPDVMKPQDSGGSANEQA 165
>gi|109484203|ref|XP_001072065.1| PREDICTED: transcription elongation factor B polypeptide 2-like
[Rattus norvegicus]
Length = 149
Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/90 (47%), Positives = 61/90 (67%), Gaps = 9/90 (10%)
Query: 24 RYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQENGEFE 83
R +GI K PP++Q+L+ KD++ +++G L E G TS A+ Q+PA VGLAFR ++ FE
Sbjct: 60 RIVEGILKRPPEEQQLY-KDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFRADD-SFE 117
Query: 84 PLELTPYSSPPDLPYVMK-------ASEQA 106
L + P+SSPP+LP VMK A+EQA
Sbjct: 118 ALRIEPFSSPPELPDVMKPQDSGGSANEQA 147
>gi|13385800|ref|NP_080581.1| transcription elongation factor B polypeptide 2 [Mus musculus]
gi|13592105|ref|NP_112391.1| transcription elongation factor B polypeptide 2 [Rattus norvegicus]
gi|51317294|sp|P62870.1|ELOB_RAT RecName: Full=Transcription elongation factor B polypeptide 2;
AltName: Full=Elongin 18 kDa subunit; AltName:
Full=Elongin-B; Short=EloB; AltName: Full=RNA polymerase
II transcription factor SIII subunit B; AltName:
Full=SIII p18
gi|51317297|sp|P62869.1|ELOB_MOUSE RecName: Full=Transcription elongation factor B polypeptide 2;
AltName: Full=Elongin 18 kDa subunit; AltName:
Full=Elongin-B; Short=EloB; AltName: Full=RNA polymerase
II transcription factor SIII subunit B; AltName:
Full=SIII p18
gi|93279654|pdb|2FNJ|B Chain B, Crystal Structure Of A B30.2SPRY DOMAIN-Containing Protein
Gustavus In Complex With Elongin B And Elongin C
gi|1054562|gb|AAA80968.1| RNA polymerase II transcription factor SIII p18 subunit [Rattus
norvegicus]
gi|12832053|dbj|BAB21946.1| unnamed protein product [Mus musculus]
gi|12833167|dbj|BAB22417.1| unnamed protein product [Mus musculus]
gi|12833843|dbj|BAB22684.1| unnamed protein product [Mus musculus]
gi|12842681|dbj|BAB25690.1| unnamed protein product [Mus musculus]
gi|12842775|dbj|BAB25727.1| unnamed protein product [Mus musculus]
gi|12848880|dbj|BAB28121.1| unnamed protein product [Mus musculus]
gi|12859256|dbj|BAB31590.1| unnamed protein product [Mus musculus]
gi|12859311|dbj|BAB31608.1| unnamed protein product [Mus musculus]
gi|12859520|dbj|BAB31677.1| unnamed protein product [Mus musculus]
gi|34784187|gb|AAH56983.1| Transcription elongation factor B (SIII), polypeptide 2 [Mus
musculus]
gi|37231623|gb|AAH58463.1| Transcription elongation factor B (SIII), polypeptide 2 [Rattus
norvegicus]
gi|56078707|gb|AAH51927.2| Transcription elongation factor B (SIII), polypeptide 2 [Mus
musculus]
gi|110293361|gb|ABG66310.1| transcription elongation factor B [Vicugna pacos]
Length = 118
Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/90 (47%), Positives = 61/90 (67%), Gaps = 9/90 (10%)
Query: 24 RYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQENGEFE 83
R +GI K PP++Q+L+ KD++ +++G L E G TS A+ Q+PA VGLAFR ++ FE
Sbjct: 29 RIVEGILKRPPEEQRLY-KDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFRADD-TFE 86
Query: 84 PLELTPYSSPPDLPYVMK-------ASEQA 106
L + P+SSPP+LP VMK A+EQA
Sbjct: 87 ALRIEPFSSPPELPDVMKPQDSGGSANEQA 116
>gi|149051967|gb|EDM03784.1| rCG34948 [Rattus norvegicus]
Length = 113
Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/90 (47%), Positives = 61/90 (67%), Gaps = 9/90 (10%)
Query: 24 RYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQENGEFE 83
R +GI K PP++Q+L+ KD++ +++G L E G TS A+ Q+PA VGLAFR ++ FE
Sbjct: 24 RIVEGILKRPPEEQRLY-KDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFRADD-TFE 81
Query: 84 PLELTPYSSPPDLPYVMK-------ASEQA 106
L + P+SSPP+LP VMK A+EQA
Sbjct: 82 ALRIEPFSSPPELPDVMKPQDSGGSANEQA 111
>gi|348584828|ref|XP_003478174.1| PREDICTED: transcription elongation factor B polypeptide 2-like
[Cavia porcellus]
Length = 155
Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/78 (50%), Positives = 55/78 (70%), Gaps = 2/78 (2%)
Query: 24 RYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQENGEFE 83
R +GI K PP +Q+L+ KD++ +++G L E G TS A+ Q+PA VGLAFR ++ FE
Sbjct: 66 RIVEGILKRPPDEQRLY-KDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFRADD-TFE 123
Query: 84 PLELTPYSSPPDLPYVMK 101
L + P+SSPP+LP VMK
Sbjct: 124 ALRIEPFSSPPELPDVMK 141
>gi|148690327|gb|EDL22274.1| mCG128496 [Mus musculus]
Length = 103
Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/78 (50%), Positives = 56/78 (71%), Gaps = 2/78 (2%)
Query: 24 RYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQENGEFE 83
R +GI K PP++Q+L+ KD++ +++G L E G TS A+ Q+PA VGLAFR ++ FE
Sbjct: 14 RIVEGILKRPPEEQRLY-KDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFRADD-TFE 71
Query: 84 PLELTPYSSPPDLPYVMK 101
L + P+SSPP+LP VMK
Sbjct: 72 ALRIEPFSSPPELPDVMK 89
>gi|281342143|gb|EFB17727.1| hypothetical protein PANDA_016258 [Ailuropoda melanoleuca]
Length = 117
Score = 75.9 bits (185), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 43/90 (47%), Positives = 59/90 (65%), Gaps = 9/90 (10%)
Query: 24 RYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQENGEFE 83
R +GI K PP +Q+L+ KD++ +++G L E G TS A+ Q+PA VGLAFR + FE
Sbjct: 29 RIVEGILKRPPDEQRLY-KDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFRADEA-FE 86
Query: 84 PLELTPYSSPPDLPYVMK-------ASEQA 106
L + P+SSPP+LP VMK A+EQA
Sbjct: 87 ALRIEPFSSPPELPDVMKPQDSGSSANEQA 116
>gi|296477149|tpg|DAA19264.1| TPA: elongin B-like [Bos taurus]
Length = 118
Score = 75.9 bits (185), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 43/90 (47%), Positives = 59/90 (65%), Gaps = 9/90 (10%)
Query: 24 RYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQENGEFE 83
R +GI K PP +Q+L+ KD++ +++G L E G TS A+ Q+PA VGLAFR + FE
Sbjct: 29 RIVEGILKRPPDEQRLY-KDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFRADEA-FE 86
Query: 84 PLELTPYSSPPDLPYVMK-------ASEQA 106
L + P+SSPP+LP VMK A+EQA
Sbjct: 87 ALRIEPFSSPPELPDVMKPQDSGSSANEQA 116
>gi|301782353|ref|XP_002926569.1| PREDICTED: transcription elongation factor B polypeptide 2-like
[Ailuropoda melanoleuca]
Length = 118
Score = 75.9 bits (185), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 43/90 (47%), Positives = 59/90 (65%), Gaps = 9/90 (10%)
Query: 24 RYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQENGEFE 83
R +GI K PP +Q+L+ KD++ +++G L E G TS A+ Q+PA VGLAFR + FE
Sbjct: 29 RIVEGILKRPPDEQRLY-KDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFRADEA-FE 86
Query: 84 PLELTPYSSPPDLPYVMK-------ASEQA 106
L + P+SSPP+LP VMK A+EQA
Sbjct: 87 ALRIEPFSSPPELPDVMKPQDSGSSANEQA 116
>gi|57088081|ref|XP_536998.1| PREDICTED: transcription elongation factor B polypeptide 2 isoform
1 [Canis lupus familiaris]
Length = 113
Score = 75.9 bits (185), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 43/90 (47%), Positives = 59/90 (65%), Gaps = 9/90 (10%)
Query: 24 RYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQENGEFE 83
R +GI K PP +Q+L+ KD++ +++G L E G TS A+ Q+PA VGLAFR + FE
Sbjct: 24 RIVEGILKRPPDEQRLY-KDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFRADEA-FE 81
Query: 84 PLELTPYSSPPDLPYVMK-------ASEQA 106
L + P+SSPP+LP VMK A+EQA
Sbjct: 82 ALRIEPFSSPPELPDVMKPQDSGSSANEQA 111
>gi|77736578|ref|NP_001029972.1| transcription elongation factor B polypeptide 2 [Bos taurus]
gi|311251879|ref|XP_003124794.1| PREDICTED: transcription elongation factor B polypeptide 2-like
isoform 1 [Sus scrofa]
gi|350581805|ref|XP_003481117.1| PREDICTED: transcription elongation factor B polypeptide 2-like
[Sus scrofa]
gi|74268162|gb|AAI03197.1| Transcription elongation factor B (SIII), polypeptide 2 (18kDa,
elongin B) [Bos taurus]
gi|296473505|tpg|DAA15620.1| TPA: elongin B [Bos taurus]
Length = 118
Score = 75.9 bits (185), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 43/90 (47%), Positives = 59/90 (65%), Gaps = 9/90 (10%)
Query: 24 RYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQENGEFE 83
R +GI K PP +Q+L+ KD++ +++G L E G TS A+ Q+PA VGLAFR + FE
Sbjct: 29 RIVEGILKRPPDEQRLY-KDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFRADEA-FE 86
Query: 84 PLELTPYSSPPDLPYVMK-------ASEQA 106
L + P+SSPP+LP VMK A+EQA
Sbjct: 87 ALRIEPFSSPPELPDVMKPQDSGSSANEQA 116
>gi|426255059|ref|XP_004021182.1| PREDICTED: transcription elongation factor B polypeptide 2-like,
partial [Ovis aries]
Length = 129
Score = 75.9 bits (185), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 39/84 (46%), Positives = 56/84 (66%), Gaps = 2/84 (2%)
Query: 24 RYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQENGEFE 83
R +GI K PP +Q+L+ KD++ +++G L E G TS A+ Q+PA VGLAFR + FE
Sbjct: 40 RIVEGILKRPPDEQRLY-KDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFRADEA-FE 97
Query: 84 PLELTPYSSPPDLPYVMKASEQAN 107
L + P+SSPP+LP VMK + +
Sbjct: 98 ALRIEPFSSPPELPDVMKPQDSGS 121
>gi|409973788|pdb|4B9K|A Chain A, Pvhl-Elob-Eloc
Complex_(2s,4r)-1-(3-Amino-2-Methylbenzoyl)-4-
Hydroxy-N-(4-(4-Methylthiazol-5-Yl)benzyl)
Pyrrolidine-2-Carboxamide Bound
gi|409973791|pdb|4B9K|D Chain D, Pvhl-Elob-Eloc
Complex_(2s,4r)-1-(3-Amino-2-Methylbenzoyl)-4-
Hydroxy-N-(4-(4-Methylthiazol-5-Yl)benzyl)
Pyrrolidine-2-Carboxamide Bound
gi|409973794|pdb|4B9K|G Chain G, Pvhl-Elob-Eloc
Complex_(2s,4r)-1-(3-Amino-2-Methylbenzoyl)-4-
Hydroxy-N-(4-(4-Methylthiazol-5-Yl)benzyl)
Pyrrolidine-2-Carboxamide Bound
gi|409973797|pdb|4B9K|J Chain J, Pvhl-Elob-Eloc
Complex_(2s,4r)-1-(3-Amino-2-Methylbenzoyl)-4-
Hydroxy-N-(4-(4-Methylthiazol-5-Yl)benzyl)
Pyrrolidine-2-Carboxamide Bound
gi|414145415|pdb|4AWJ|A Chain A, Pvhl:elob:eloc Complex, In Complex With Capped
Hydroxyproline
gi|414145418|pdb|4AWJ|D Chain D, Pvhl:elob:eloc Complex, In Complex With Capped
Hydroxyproline
gi|414145421|pdb|4AWJ|G Chain G, Pvhl:elob:eloc Complex, In Complex With Capped
Hydroxyproline
gi|414145424|pdb|4AWJ|J Chain J, Pvhl:elob:eloc Complex, In Complex With Capped
Hydroxyproline
Length = 104
Score = 75.5 bits (184), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 39/78 (50%), Positives = 55/78 (70%), Gaps = 2/78 (2%)
Query: 24 RYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQENGEFE 83
R +GI K PP +Q+L+ KD++ +++G L E G TS A+ Q+PA VGLAFR ++ FE
Sbjct: 29 RIVEGILKRPPDEQRLY-KDDQLLDDGKTLGEXGFTSQTARPQAPATVGLAFRADD-TFE 86
Query: 84 PLELTPYSSPPDLPYVMK 101
L + P+SSPP+LP VMK
Sbjct: 87 ALXIEPFSSPPELPDVMK 104
>gi|332814681|ref|XP_001148528.2| PREDICTED: transcription elongation factor B polypeptide 2-like
isoform 1 [Pan troglodytes]
Length = 168
Score = 75.5 bits (184), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 43/90 (47%), Positives = 60/90 (66%), Gaps = 9/90 (10%)
Query: 24 RYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQENGEFE 83
R +GI K PP +Q+L+ KD++ +++G L E G TS A+ Q+PA VGLAFR ++ FE
Sbjct: 36 RMVEGILKRPPDEQRLY-KDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFRADD-TFE 93
Query: 84 PLELTPYSSPPDLPYVMK-------ASEQA 106
L + P+SSPP+LP VMK A+EQA
Sbjct: 94 ALCIEPFSSPPELPDVMKPQDSGSSANEQA 123
>gi|327281077|ref|XP_003225276.1| PREDICTED: transcription elongation factor B polypeptide 2-like
isoform 1 [Anolis carolinensis]
Length = 119
Score = 75.5 bits (184), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 56/85 (65%), Gaps = 1/85 (1%)
Query: 24 RYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQENGEFE 83
R +GI K PP++Q+L+ K+++ +++ L + G TS A+ Q+PA VGLAFR FE
Sbjct: 29 RIVEGILKRPPEEQRLY-KEDQLLDDTKTLGDCGFTSQTARPQAPATVGLAFRISEDAFE 87
Query: 84 PLELTPYSSPPDLPYVMKASEQANG 108
PL + P+SSPP+LP VMK + +
Sbjct: 88 PLRIDPFSSPPELPDVMKPQDSGSS 112
>gi|46276893|ref|NP_996896.1| transcription elongation factor B polypeptide 2 isoform b [Homo
sapiens]
gi|119605878|gb|EAW85472.1| transcription elongation factor B (SIII), polypeptide 2 (18kDa,
elongin B), isoform CRA_a [Homo sapiens]
gi|119605880|gb|EAW85474.1| transcription elongation factor B (SIII), polypeptide 2 (18kDa,
elongin B), isoform CRA_a [Homo sapiens]
Length = 161
Score = 75.5 bits (184), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 43/90 (47%), Positives = 60/90 (66%), Gaps = 9/90 (10%)
Query: 24 RYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQENGEFE 83
R +GI K PP +Q+L+ KD++ +++G L E G TS A+ Q+PA VGLAFR ++ FE
Sbjct: 29 RIVEGILKRPPDEQRLY-KDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFRADD-TFE 86
Query: 84 PLELTPYSSPPDLPYVMK-------ASEQA 106
L + P+SSPP+LP VMK A+EQA
Sbjct: 87 ALCIEPFSSPPELPDVMKPQDSGSSANEQA 116
>gi|307686313|dbj|BAJ21087.1| transcription elongation factor B (SIII), polypeptide 2 [synthetic
construct]
Length = 161
Score = 75.5 bits (184), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 43/90 (47%), Positives = 60/90 (66%), Gaps = 9/90 (10%)
Query: 24 RYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQENGEFE 83
R +GI K PP +Q+L+ KD++ +++G L E G TS A+ Q+PA VGLAFR ++ FE
Sbjct: 29 RIVEGILKRPPDEQRLY-KDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFRADD-TFE 86
Query: 84 PLELTPYSSPPDLPYVMK-------ASEQA 106
L + P+SSPP+LP VMK A+EQA
Sbjct: 87 ALCIEPFSSPPELPDVMKPQDSGSSANEQA 116
>gi|426380853|ref|XP_004057074.1| PREDICTED: transcription elongation factor B polypeptide 2 isoform
3 [Gorilla gorilla gorilla]
Length = 167
Score = 75.1 bits (183), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 39/84 (46%), Positives = 57/84 (67%), Gaps = 2/84 (2%)
Query: 24 RYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQENGEFE 83
R +GI K PP +Q+L+ KD++ +++G L E G TS A+ Q+PA VGLAFR ++ FE
Sbjct: 29 RIVEGILKRPPDEQRLY-KDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFRADD-TFE 86
Query: 84 PLELTPYSSPPDLPYVMKASEQAN 107
L + P+SSPP+LP VMK + +
Sbjct: 87 ALCIEPFSSPPELPDVMKPQDSGS 110
>gi|6005890|ref|NP_009039.1| transcription elongation factor B polypeptide 2 isoform a [Homo
sapiens]
gi|297697880|ref|XP_002826061.1| PREDICTED: transcription elongation factor B polypeptide 2 isoform
1 [Pongo abelii]
gi|297697882|ref|XP_002826062.1| PREDICTED: transcription elongation factor B polypeptide 2 isoform
2 [Pongo abelii]
gi|395747366|ref|XP_003778591.1| PREDICTED: transcription elongation factor B polypeptide 2 [Pongo
abelii]
gi|402907377|ref|XP_003916452.1| PREDICTED: transcription elongation factor B polypeptide 2 isoform
1 [Papio anubis]
gi|402907379|ref|XP_003916453.1| PREDICTED: transcription elongation factor B polypeptide 2 isoform
2 [Papio anubis]
gi|410049831|ref|XP_003952818.1| PREDICTED: transcription elongation factor B polypeptide 2 [Pan
troglodytes]
gi|426380849|ref|XP_004057072.1| PREDICTED: transcription elongation factor B polypeptide 2 isoform
1 [Gorilla gorilla gorilla]
gi|426380851|ref|XP_004057073.1| PREDICTED: transcription elongation factor B polypeptide 2 isoform
2 [Gorilla gorilla gorilla]
gi|32699512|sp|Q15370.1|ELOB_HUMAN RecName: Full=Transcription elongation factor B polypeptide 2;
AltName: Full=Elongin 18 kDa subunit; AltName:
Full=Elongin-B; Short=EloB; AltName: Full=RNA polymerase
II transcription factor SIII subunit B; AltName:
Full=SIII p18
gi|4930144|pdb|1VCB|A Chain A, The Vhl-Elonginc-Elonginb Structure
gi|4930147|pdb|1VCB|D Chain D, The Vhl-Elonginc-Elonginb Structure
gi|4930150|pdb|1VCB|G Chain G, The Vhl-Elonginc-Elonginb Structure
gi|4930153|pdb|1VCB|J Chain J, The Vhl-Elonginc-Elonginb Structure
gi|21730758|pdb|1LM8|B Chain B, Structure Of A Hif-1a-Pvhl-Elonginb-Elonginc Complex
gi|21730825|pdb|1LQB|A Chain A, Crystal Structure Of A Hydroxylated Hif-1 Alpha Peptide
Bound To The PvhlELONGIN-CELONGIN-B Complex
gi|90109055|pdb|2C9W|B Chain B, Crystal Structure Of Socs-2 In Complex With Elongin-B And
Elongin-C At 1.9a Resolution
gi|114794867|pdb|2IZV|B Chain B, Crystal Structure Of Socs-4 In Complex With Elongin-B And
Elongin-C At 2.55a Resolution
gi|193885443|pdb|3DCG|A Chain A, Crystal Structure Of The Hiv Vif Bc-Box In Complex With
Human Elonginb And Elonginc
gi|193885445|pdb|3DCG|C Chain C, Crystal Structure Of The Hiv Vif Bc-Box In Complex With
Human Elonginb And Elonginc
gi|206581661|pdb|2JZ3|B Chain B, Socs Box Elonginbc Ternary Complex
gi|379318533|pdb|3ZRC|A Chain A, Pvhl54-213-Elob-Eloc Complex
(4r)-4-Hydroxy-1-[(3-Methylisoxazol-5-
Yl)acetyl]-N-[4-(1,3-Oxazol-5-Yl)benzyl]-L-Prolinamide
Bound
gi|379318536|pdb|3ZRC|D Chain D, Pvhl54-213-Elob-Eloc Complex
(4r)-4-Hydroxy-1-[(3-Methylisoxazol-5-
Yl)acetyl]-N-[4-(1,3-Oxazol-5-Yl)benzyl]-L-Prolinamide
Bound
gi|379318539|pdb|3ZRC|G Chain G, Pvhl54-213-Elob-Eloc Complex
(4r)-4-Hydroxy-1-[(3-Methylisoxazol-5-
Yl)acetyl]-N-[4-(1,3-Oxazol-5-Yl)benzyl]-L-Prolinamide
Bound
gi|379318542|pdb|3ZRC|J Chain J, Pvhl54-213-Elob-Eloc Complex
(4r)-4-Hydroxy-1-[(3-Methylisoxazol-5-
Yl)acetyl]-N-[4-(1,3-Oxazol-5-Yl)benzyl]-L-Prolinamide
Bound
gi|379318545|pdb|3ZRF|A Chain A, Pvhl54-213-Elob-Eloc Complex_apo
gi|379318548|pdb|3ZRF|D Chain D, Pvhl54-213-Elob-Eloc Complex_apo
gi|379318551|pdb|3ZRF|G Chain G, Pvhl54-213-Elob-Eloc Complex_apo
gi|379318554|pdb|3ZRF|J Chain J, Pvhl54-213-Elob-Eloc Complex_apo
gi|400261143|pdb|3ZTC|A Chain A, Pvhl54-213-Elob-Eloc Complex _
(2s,4r)-N-((1,1'-Biphenyl)-4-
Ylmethyl)-4-Hydroxy-1-(2-(3-Methylisoxazol-5-Yl)acetyl)
Pyrrolidine-2-Carboxamide
gi|400261146|pdb|3ZTC|D Chain D, Pvhl54-213-Elob-Eloc Complex _
(2s,4r)-N-((1,1'-Biphenyl)-4-
Ylmethyl)-4-Hydroxy-1-(2-(3-Methylisoxazol-5-Yl)acetyl)
Pyrrolidine-2-Carboxamide
gi|400261149|pdb|3ZTC|G Chain G, Pvhl54-213-Elob-Eloc Complex _
(2s,4r)-N-((1,1'-Biphenyl)-4-
Ylmethyl)-4-Hydroxy-1-(2-(3-Methylisoxazol-5-Yl)acetyl)
Pyrrolidine-2-Carboxamide
gi|400261152|pdb|3ZTC|J Chain J, Pvhl54-213-Elob-Eloc Complex _
(2s,4r)-N-((1,1'-Biphenyl)-4-
Ylmethyl)-4-Hydroxy-1-(2-(3-Methylisoxazol-5-Yl)acetyl)
Pyrrolidine-2-Carboxamide
gi|400261155|pdb|3ZTD|A Chain A, Pvhl54-213-Elob-Eloc Complex _ Methyl
4-(((2s,4r)-4-Hydroxy-
1-(2-(3-Methylisoxazol-5-Yl)acetyl)pyrrolidine-2-
Carboxamido)methyl)benzoate
gi|400261158|pdb|3ZTD|D Chain D, Pvhl54-213-Elob-Eloc Complex _ Methyl
4-(((2s,4r)-4-Hydroxy-
1-(2-(3-Methylisoxazol-5-Yl)acetyl)pyrrolidine-2-
Carboxamido)methyl)benzoate
gi|400261161|pdb|3ZTD|G Chain G, Pvhl54-213-Elob-Eloc Complex _ Methyl
4-(((2s,4r)-4-Hydroxy-
1-(2-(3-Methylisoxazol-5-Yl)acetyl)pyrrolidine-2-
Carboxamido)methyl)benzoate
gi|400261164|pdb|3ZTD|J Chain J, Pvhl54-213-Elob-Eloc Complex _ Methyl
4-(((2s,4r)-4-Hydroxy-
1-(2-(3-Methylisoxazol-5-Yl)acetyl)pyrrolidine-2-
Carboxamido)methyl)benzoate
gi|400261167|pdb|3ZUN|A Chain A, Pvhl54-213-Elob-Eloc Complex_(2s,4r)-4-Hydroxy-1-(2-(3-
Methylisoxazol-5-Yl)acetyl)-N-(4-
Nitrobenzyl)pyrrolidine-2- Carboxamide Bound
gi|400261170|pdb|3ZUN|D Chain D, Pvhl54-213-Elob-Eloc Complex_(2s,4r)-4-Hydroxy-1-(2-(3-
Methylisoxazol-5-Yl)acetyl)-N-(4-
Nitrobenzyl)pyrrolidine-2- Carboxamide Bound
gi|400261173|pdb|3ZUN|G Chain G, Pvhl54-213-Elob-Eloc Complex_(2s,4r)-4-Hydroxy-1-(2-(3-
Methylisoxazol-5-Yl)acetyl)-N-(4-
Nitrobenzyl)pyrrolidine-2- Carboxamide Bound
gi|400261176|pdb|3ZUN|J Chain J, Pvhl54-213-Elob-Eloc Complex_(2s,4r)-4-Hydroxy-1-(2-(3-
Methylisoxazol-5-Yl)acetyl)-N-(4-
Nitrobenzyl)pyrrolidine-2- Carboxamide Bound
gi|409973776|pdb|4B95|A Chain A, Pvhl-Elob-Elob-Elocc
Complex_(2s,4r)-1-(2-Chlorophenyl)carbonyl-N-[
(4-Chlorophenyl)methyl]-4-Oxidanyl-Pyrrolidine-2-
Carboxamide Bound
gi|409973779|pdb|4B95|D Chain D, Pvhl-Elob-Elob-Elocc
Complex_(2s,4r)-1-(2-Chlorophenyl)carbonyl-N-[
(4-Chlorophenyl)methyl]-4-Oxidanyl-Pyrrolidine-2-
Carboxamide Bound
gi|409973782|pdb|4B95|G Chain G, Pvhl-Elob-Elob-Elocc
Complex_(2s,4r)-1-(2-Chlorophenyl)carbonyl-N-[
(4-Chlorophenyl)methyl]-4-Oxidanyl-Pyrrolidine-2-
Carboxamide Bound
gi|409973785|pdb|4B95|J Chain J, Pvhl-Elob-Elob-Elocc
Complex_(2s,4r)-1-(2-Chlorophenyl)carbonyl-N-[
(4-Chlorophenyl)methyl]-4-Oxidanyl-Pyrrolidine-2-
Carboxamide Bound
gi|414145411|pdb|4AJY|B Chain B, Von Hippel-Lindau Protein-Elonginb-Elonginc Complex, Bound
To Hif1- Alpha Peptide
gi|444302116|pdb|3ZKJ|C Chain C, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
gi|444302119|pdb|3ZKJ|F Chain F, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
gi|992915|gb|AAA75522.1| RNA polymerase II transcription factor SIII p18 subunit [Homo
sapiens]
gi|15342072|gb|AAH13306.1| Transcription elongation factor B (SIII), polypeptide 2 (18kDa,
elongin B) [Homo sapiens]
gi|40787654|gb|AAH65000.1| Transcription elongation factor B (SIII), polypeptide 2 (18kDa,
elongin B) [Homo sapiens]
gi|119605881|gb|EAW85475.1| transcription elongation factor B (SIII), polypeptide 2 (18kDa,
elongin B), isoform CRA_c [Homo sapiens]
gi|167774213|gb|ABZ92541.1| transcription elongation factor B (SIII), polypeptide 2 (18kDa,
elongin B) [synthetic construct]
gi|387539456|gb|AFJ70355.1| transcription elongation factor B polypeptide 2 isoform a [Macaca
mulatta]
gi|410251556|gb|JAA13745.1| transcription elongation factor B (SIII), polypeptide 2 (18kDa,
elongin B) [Pan troglodytes]
gi|1583023|prf||2119399A elongin B
Length = 118
Score = 75.1 bits (183), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 39/84 (46%), Positives = 57/84 (67%), Gaps = 2/84 (2%)
Query: 24 RYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQENGEFE 83
R +GI K PP +Q+L+ KD++ +++G L E G TS A+ Q+PA VGLAFR ++ FE
Sbjct: 29 RIVEGILKRPPDEQRLY-KDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFRADD-TFE 86
Query: 84 PLELTPYSSPPDLPYVMKASEQAN 107
L + P+SSPP+LP VMK + +
Sbjct: 87 ALCIEPFSSPPELPDVMKPQDSGS 110
>gi|114660528|ref|XP_001173192.1| PREDICTED: transcription elongation factor B polypeptide 2 isoform
1 [Pan troglodytes]
Length = 161
Score = 75.1 bits (183), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 39/84 (46%), Positives = 57/84 (67%), Gaps = 2/84 (2%)
Query: 24 RYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQENGEFE 83
R +GI K PP +Q+L+ KD++ +++G L E G TS A+ Q+PA VGLAFR ++ FE
Sbjct: 29 RIVEGILKRPPDEQRLY-KDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFRADD-TFE 86
Query: 84 PLELTPYSSPPDLPYVMKASEQAN 107
L + P+SSPP+LP VMK + +
Sbjct: 87 ALCIEPFSSPPELPDVMKPQDSGS 110
>gi|344291986|ref|XP_003417709.1| PREDICTED: transcription elongation factor B polypeptide 2-like
[Loxodonta africana]
Length = 193
Score = 75.1 bits (183), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 39/84 (46%), Positives = 57/84 (67%), Gaps = 2/84 (2%)
Query: 24 RYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQENGEFE 83
R +GI K PP++Q+L+ KD++ +E+ L E G TS A+ Q+PA VGLAFR ++ FE
Sbjct: 104 RIVEGILKRPPEEQRLY-KDDQLLEDAKTLGECGFTSQTARPQAPATVGLAFRADD-TFE 161
Query: 84 PLELTPYSSPPDLPYVMKASEQAN 107
L + P+SSPP+LP VMK + +
Sbjct: 162 ALRIEPFSSPPELPDVMKPQDSGS 185
>gi|119605879|gb|EAW85473.1| transcription elongation factor B (SIII), polypeptide 2 (18kDa,
elongin B), isoform CRA_b [Homo sapiens]
gi|119605882|gb|EAW85476.1| transcription elongation factor B (SIII), polypeptide 2 (18kDa,
elongin B), isoform CRA_b [Homo sapiens]
Length = 113
Score = 75.1 bits (183), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 39/84 (46%), Positives = 57/84 (67%), Gaps = 2/84 (2%)
Query: 24 RYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQENGEFE 83
R +GI K PP +Q+L+ KD++ +++G L E G TS A+ Q+PA VGLAFR ++ FE
Sbjct: 24 RIVEGILKRPPDEQRLY-KDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFRADD-TFE 81
Query: 84 PLELTPYSSPPDLPYVMKASEQAN 107
L + P+SSPP+LP VMK + +
Sbjct: 82 ALCIEPFSSPPELPDVMKPQDSGS 105
>gi|332258621|ref|XP_003278393.1| PREDICTED: transcription elongation factor B polypeptide 2-like
[Nomascus leucogenys]
Length = 113
Score = 75.1 bits (183), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 43/90 (47%), Positives = 60/90 (66%), Gaps = 9/90 (10%)
Query: 24 RYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQENGEFE 83
R +GI K PP +Q+L+ KD++ +++G L E G TS A+ Q+PA VGLAFR ++ FE
Sbjct: 24 RIVEGILKRPPDEQRLY-KDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFRADD-TFE 81
Query: 84 PLELTPYSSPPDLPYVMK-------ASEQA 106
L + P+SSPP+LP VMK A+EQA
Sbjct: 82 ALCIEPFSSPPELPDVMKPQDSGSSANEQA 111
>gi|327281079|ref|XP_003225277.1| PREDICTED: transcription elongation factor B polypeptide 2-like
isoform 2 [Anolis carolinensis]
Length = 142
Score = 75.1 bits (183), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 56/85 (65%), Gaps = 1/85 (1%)
Query: 24 RYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQENGEFE 83
R +GI K PP++Q+L+ K+++ +++ L + G TS A+ Q+PA VGLAFR FE
Sbjct: 52 RIVEGILKRPPEEQRLY-KEDQLLDDTKTLGDCGFTSQTARPQAPATVGLAFRISEDAFE 110
Query: 84 PLELTPYSSPPDLPYVMKASEQANG 108
PL + P+SSPP+LP VMK + +
Sbjct: 111 PLRIDPFSSPPELPDVMKPQDSGSS 135
>gi|332240106|ref|XP_003269231.1| PREDICTED: transcription elongation factor B polypeptide 2-like
[Nomascus leucogenys]
Length = 162
Score = 75.1 bits (183), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 39/84 (46%), Positives = 57/84 (67%), Gaps = 2/84 (2%)
Query: 24 RYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQENGEFE 83
R +GI K PP +Q+L+ KD++ +++G L E G TS A+ Q+PA VGLAFR ++ FE
Sbjct: 24 RIVEGILKRPPDEQRLY-KDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFRADD-TFE 81
Query: 84 PLELTPYSSPPDLPYVMKASEQAN 107
L + P+SSPP+LP VMK + +
Sbjct: 82 ALCIEPFSSPPELPDVMKPQDSGS 105
>gi|219278714|ref|NP_001136426.1| transcription elongation factor B, polypeptide 2 [Danio rerio]
Length = 119
Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/90 (45%), Positives = 57/90 (63%), Gaps = 8/90 (8%)
Query: 24 RYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQENGEFE 83
R +GI K P+DQ+L+ KD+ +E+ L + G T+ A+ Q+PA VGLAFR + FE
Sbjct: 29 RIVEGILKRAPEDQRLY-KDDMLLEDSKTLGDCGFTNQTARPQAPATVGLAFRISDDAFE 87
Query: 84 PLELTPYSSPPDLPYVMK-------ASEQA 106
PL + +SSPP+LP VMK A+EQA
Sbjct: 88 PLRIEAFSSPPELPDVMKPQDSGSTANEQA 117
>gi|440913310|gb|ELR62774.1| Transcription elongation factor B polypeptide 2 [Bos grunniens
mutus]
Length = 118
Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 42/89 (47%), Positives = 59/89 (66%), Gaps = 5/89 (5%)
Query: 24 RYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQENGEFE 83
R +GI K PP +Q+L+ KDN+ +++ L E G TS +A Q+P VGLAFR E+ FE
Sbjct: 29 RVIQGILKRPPDEQRLY-KDNQLLDDSKTLGECGFTSQMALPQAPVTVGLAFR-EDEAFE 86
Query: 84 PLELTPYSSPPDLPYVMK---ASEQANGQ 109
+ + P+SSPP+LP VMK + +ANGQ
Sbjct: 87 DVCIEPFSSPPELPDVMKPQDSGSRANGQ 115
>gi|334333437|ref|XP_001371570.2| PREDICTED: transcription elongation factor B polypeptide 2-like
[Monodelphis domestica]
Length = 118
Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/85 (44%), Positives = 56/85 (65%), Gaps = 2/85 (2%)
Query: 24 RYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQENGEFE 83
R +GI K PP +Q+L+ KD++ +++ L E G TS A+ Q+PA VGLAFR ++ FE
Sbjct: 29 RIVEGILKRPPDEQRLY-KDDQLLDDSKTLGECGFTSQTARPQAPATVGLAFRADDA-FE 86
Query: 84 PLELTPYSSPPDLPYVMKASEQANG 108
L + +SSPP+LP VMK + +G
Sbjct: 87 TLRIESFSSPPELPDVMKPQDSGSG 111
>gi|229367660|gb|ACQ58810.1| Transcription elongation factor B polypeptide 2 [Anoplopoma
fimbria]
Length = 119
Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/90 (45%), Positives = 58/90 (64%), Gaps = 8/90 (8%)
Query: 24 RYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQENGEFE 83
R +GI K PP+DQ+L+ KD++ +E+ L + G T+ A+ Q+PA VGLAFR + FE
Sbjct: 29 RIVEGILKRPPEDQRLY-KDDQSLEDSKTLGDCGFTNQTARPQAPATVGLAFRINDEMFE 87
Query: 84 PLELTPYSSPPDLPYVMK-------ASEQA 106
L + +SSPP+LP VMK A+EQA
Sbjct: 88 QLHVEAFSSPPELPDVMKPQDSGSTANEQA 117
>gi|380800535|gb|AFE72143.1| transcription elongation factor B polypeptide 2 isoform a, partial
[Macaca mulatta]
Length = 97
Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 57/84 (67%), Gaps = 2/84 (2%)
Query: 24 RYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQENGEFE 83
R +G+ K PP +Q+L+ KD++ +++G L E G TS A+ Q+PA VGLAFR ++ FE
Sbjct: 8 RLVEGLLKRPPDEQRLY-KDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFRADD-TFE 65
Query: 84 PLELTPYSSPPDLPYVMKASEQAN 107
L + P+SSPP+LP VMK + +
Sbjct: 66 ALCIEPFSSPPELPDVMKPQDSGS 89
>gi|296473201|tpg|DAA15316.1| TPA: elongin B-like [Bos taurus]
Length = 118
Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/89 (46%), Positives = 58/89 (65%), Gaps = 5/89 (5%)
Query: 24 RYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQENGEFE 83
R +GI K PP +Q+L+ KDN+ +++ L E G TS A Q+P VGLAFR++ FE
Sbjct: 29 RVIQGILKRPPDEQRLY-KDNQLLDDSRTLGECGFTSQTALPQAPVTVGLAFREDEA-FE 86
Query: 84 PLELTPYSSPPDLPYVMK---ASEQANGQ 109
+ + P+SSPP+LP VMK + +ANGQ
Sbjct: 87 DVCIEPFSSPPELPDVMKPRDSGSRANGQ 115
>gi|32451854|gb|AAH54698.1| Tceb2 protein, partial [Danio rerio]
Length = 150
Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/90 (45%), Positives = 57/90 (63%), Gaps = 8/90 (8%)
Query: 24 RYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQENGEFE 83
R +GI K P+DQ+L+ KD+ +E+ L + G T+ A+ Q+PA VGLAFR + FE
Sbjct: 60 RIVEGILKRAPEDQRLY-KDDMLLEDSKTLGDCGFTNQTARPQAPATVGLAFRISDDAFE 118
Query: 84 PLELTPYSSPPDLPYVMK-------ASEQA 106
PL + +SSPP+LP VMK A+EQA
Sbjct: 119 PLRIEAFSSPPELPDVMKPQDSGSTANEQA 148
>gi|440913490|gb|ELR62939.1| Transcription elongation factor B polypeptide 2, partial [Bos
grunniens mutus]
Length = 118
Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/90 (46%), Positives = 58/90 (64%), Gaps = 9/90 (10%)
Query: 24 RYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQENGEFE 83
R + I K PP +Q+L+ KD++ +++G L E G TS A+ Q+PA VGLAFR + FE
Sbjct: 29 RIVEDILKRPPDEQRLY-KDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFRADEA-FE 86
Query: 84 PLELTPYSSPPDLPYVMK-------ASEQA 106
L + P+SSPP+LP VMK A+EQA
Sbjct: 87 ALRIEPFSSPPELPDVMKPQDSGSSANEQA 116
>gi|410903029|ref|XP_003964996.1| PREDICTED: transcription elongation factor B polypeptide 2-like
[Takifugu rubripes]
Length = 127
Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 53/84 (63%), Gaps = 1/84 (1%)
Query: 24 RYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQENGEFE 83
R +GI K PP+DQ+L+ KD+ + +G L G T+ A+ Q PA VGLAFR + FE
Sbjct: 37 RIVEGILKRPPEDQRLY-KDDLLLSDGQTLGNCGFTNQTARPQGPATVGLAFRLGDDTFE 95
Query: 84 PLELTPYSSPPDLPYVMKASEQAN 107
L + P+S+PP+LP VMK + +
Sbjct: 96 QLRVEPFSTPPELPDVMKPQDSGS 119
>gi|348542628|ref|XP_003458786.1| PREDICTED: transcription elongation factor B polypeptide 2-like
isoform 1 [Oreochromis niloticus]
Length = 119
Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/90 (45%), Positives = 58/90 (64%), Gaps = 8/90 (8%)
Query: 24 RYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQENGEFE 83
R +GI K PP+DQ+L+ KD++ +E+ L + G T+ A+ Q+PA VGLAFR + FE
Sbjct: 29 RIVEGILKRPPEDQRLY-KDDQLLEDSKTLGDSGFTNQTARPQAPATVGLAFRINDEMFE 87
Query: 84 PLELTPYSSPPDLPYVMK-------ASEQA 106
L + +SSPP+LP VMK A+EQA
Sbjct: 88 QLHIEAFSSPPELPDVMKPQDSGSTANEQA 117
>gi|348510098|ref|XP_003442583.1| PREDICTED: transcription elongation factor B polypeptide 2-like
[Oreochromis niloticus]
Length = 153
Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/90 (44%), Positives = 56/90 (62%), Gaps = 8/90 (8%)
Query: 24 RYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQENGEFE 83
R +GI K PP+DQ+L+ KD+ + + L G T+ A+ Q+PA VGLAFR + FE
Sbjct: 63 RIVEGILKRPPEDQRLY-KDDVLLNDSQTLGNCGFTNQTARPQAPATVGLAFRLSDDSFE 121
Query: 84 PLELTPYSSPPDLPYVMK-------ASEQA 106
L + P+S+PP+LP VMK A+EQA
Sbjct: 122 QLRIEPFSTPPELPDVMKPQDSGSTANEQA 151
>gi|348542630|ref|XP_003458787.1| PREDICTED: transcription elongation factor B polypeptide 2-like
isoform 2 [Oreochromis niloticus]
Length = 114
Score = 72.8 bits (177), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 41/90 (45%), Positives = 58/90 (64%), Gaps = 8/90 (8%)
Query: 24 RYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQENGEFE 83
R +GI K PP+DQ+L+ KD++ +E+ L + G T+ A+ Q+PA VGLAFR + FE
Sbjct: 24 RIVEGILKRPPEDQRLY-KDDQLLEDSKTLGDSGFTNQTARPQAPATVGLAFRINDEMFE 82
Query: 84 PLELTPYSSPPDLPYVMK-------ASEQA 106
L + +SSPP+LP VMK A+EQA
Sbjct: 83 QLHIEAFSSPPELPDVMKPQDSGSTANEQA 112
>gi|332267574|ref|XP_003282755.1| PREDICTED: transcription elongation factor B polypeptide 2-like
[Nomascus leucogenys]
Length = 118
Score = 72.4 bits (176), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/81 (46%), Positives = 55/81 (67%), Gaps = 2/81 (2%)
Query: 27 KGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQENGEFEPLE 86
+GI K PP +Q+L+ KD++ +++G L E G TS A+ Q+PA VGLAFR + FE L
Sbjct: 32 EGILKRPPDEQRLY-KDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFRAGD-TFEALC 89
Query: 87 LTPYSSPPDLPYVMKASEQAN 107
+ P+SSPP+LP VMK + +
Sbjct: 90 IEPFSSPPELPDVMKPQDSGS 110
>gi|387015676|gb|AFJ49957.1| Transcription elongation factor B polypeptide 2-like [Crotalus
adamanteus]
Length = 119
Score = 72.4 bits (176), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 40/90 (44%), Positives = 57/90 (63%), Gaps = 8/90 (8%)
Query: 24 RYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQENGEFE 83
R +GI K PP++Q+L+ KD++ +++ L + G TS A+ Q+PA VGLAFR FE
Sbjct: 29 RIVEGILKRPPEEQRLY-KDDQLLDDSKTLGDCGFTSQTARPQAPATVGLAFRASEDAFE 87
Query: 84 PLELTPYSSPPDLPYVMK-------ASEQA 106
L + +SSPP+LP VMK A+EQA
Sbjct: 88 NLRIDSFSSPPELPDVMKPQDSGSSANEQA 117
>gi|350536169|ref|NP_001233157.1| transcription elongation factor B polypeptide 2 [Felis catus]
gi|334848055|gb|AEH04662.1| transcription elongation factor B polypeptide 2 [Felis catus]
Length = 118
Score = 72.0 bits (175), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 55/84 (65%), Gaps = 2/84 (2%)
Query: 24 RYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQENGEFE 83
R +GI K PP +Q+L+ KD++ +++G L E G TS A Q+PA VGLAFR + F+
Sbjct: 29 RTVEGILKQPPGEQQLY-KDDQLLDDGKTLGECGFTSQTAGPQAPATVGLAFRADEA-FK 86
Query: 84 PLELTPYSSPPDLPYVMKASEQAN 107
L + P+SSPP+LP VMK + +
Sbjct: 87 ALRMEPFSSPPELPDVMKPQDSGS 110
>gi|395515572|ref|XP_003761975.1| PREDICTED: uncharacterized protein LOC100915663 [Sarcophilus
harrisii]
Length = 245
Score = 71.6 bits (174), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 38/85 (44%), Positives = 56/85 (65%), Gaps = 2/85 (2%)
Query: 24 RYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQENGEFE 83
R +GI K PP +Q+L+ KD++ +++ L E G TS A+ Q+PA VGLAFR ++ FE
Sbjct: 156 RIVEGILKRPPDEQRLY-KDDQLLDDSKTLGECGFTSQTARPQAPATVGLAFRADD-VFE 213
Query: 84 PLELTPYSSPPDLPYVMKASEQANG 108
L + +SSPP+LP VMK + +G
Sbjct: 214 TLRIESFSSPPELPDVMKPQDSGSG 238
>gi|47217804|emb|CAG07218.1| unnamed protein product [Tetraodon nigroviridis]
Length = 119
Score = 71.6 bits (174), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 40/90 (44%), Positives = 56/90 (62%), Gaps = 8/90 (8%)
Query: 24 RYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQENGEFE 83
R +GI K PP+DQ+L+ KD+ + +G L G T+ A+ Q+PA VGLAFR + FE
Sbjct: 29 RIVEGILKRPPEDQRLY-KDDLLLNDGQTLGNCGFTNQTARPQAPATVGLAFRLSDDTFE 87
Query: 84 PLELTPYSSPPDLPYVMK-------ASEQA 106
L + +S+PP+LP VMK A+EQA
Sbjct: 88 QLRIESFSTPPELPDVMKPQDSGSTANEQA 117
>gi|397498288|ref|XP_003819916.1| PREDICTED: transcription elongation factor B polypeptide 2-like
[Pan paniscus]
Length = 118
Score = 71.6 bits (174), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 39/84 (46%), Positives = 55/84 (65%), Gaps = 2/84 (2%)
Query: 24 RYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQENGEFE 83
R +GI K PP +Q+L+ KD + +++G L E G TS A+ Q+PA VGLAFR ++ FE
Sbjct: 29 RVVEGILKRPPDEQRLY-KDYQLLDDGKTLGECGFTSQTARPQAPATVGLAFRADDA-FE 86
Query: 84 PLELTPYSSPPDLPYVMKASEQAN 107
L + P+SSPP+L VMK E +
Sbjct: 87 ALCIQPFSSPPELLDVMKPQESGS 110
>gi|109485501|ref|XP_001076237.1| PREDICTED: transcription elongation factor B polypeptide 2-like
[Rattus norvegicus]
gi|392350392|ref|XP_345991.5| PREDICTED: transcription elongation factor B polypeptide 2-like
[Rattus norvegicus]
Length = 147
Score = 71.6 bits (174), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 38/81 (46%), Positives = 53/81 (65%), Gaps = 2/81 (2%)
Query: 27 KGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQENGEFEPLE 86
KGI K PP++Q+L+ KD + ++ G L E G TS A+ Q+PA VGLAFR ++ FE L
Sbjct: 61 KGILKRPPEEQRLY-KDGQLLDGGKTLGECGFTSQTARPQAPATVGLAFRADD-TFEALR 118
Query: 87 LTPYSSPPDLPYVMKASEQAN 107
+ P+SSP +LP VMK +
Sbjct: 119 MEPFSSPLELPDVMKPQDSGG 139
>gi|432922409|ref|XP_004080338.1| PREDICTED: transcription elongation factor B polypeptide 2-like
isoform 1 [Oryzias latipes]
Length = 119
Score = 71.2 bits (173), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 40/90 (44%), Positives = 56/90 (62%), Gaps = 8/90 (8%)
Query: 24 RYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQENGEFE 83
R +GI K P DQ+L+ KD++ +E+ L + G T+ A+ Q+PA VGLAFR + FE
Sbjct: 29 RIVEGILKRAPDDQRLY-KDDQLLEDNKTLGDCGFTNQTARPQAPATVGLAFRSNDDMFE 87
Query: 84 PLELTPYSSPPDLPYVMK-------ASEQA 106
L + +SSPP+LP VMK A+EQA
Sbjct: 88 QLHIEAFSSPPELPDVMKPQDSGSTANEQA 117
>gi|432922677|ref|XP_004080339.1| PREDICTED: transcription elongation factor B polypeptide 2-like
isoform 2 [Oryzias latipes]
Length = 114
Score = 71.2 bits (173), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 40/90 (44%), Positives = 56/90 (62%), Gaps = 8/90 (8%)
Query: 24 RYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQENGEFE 83
R +GI K P DQ+L+ KD++ +E+ L + G T+ A+ Q+PA VGLAFR + FE
Sbjct: 24 RIVEGILKRAPDDQRLY-KDDQLLEDNKTLGDCGFTNQTARPQAPATVGLAFRSNDDMFE 82
Query: 84 PLELTPYSSPPDLPYVMK-------ASEQA 106
L + +SSPP+LP VMK A+EQA
Sbjct: 83 QLHIEAFSSPPELPDVMKPQDSGSTANEQA 112
>gi|225706954|gb|ACO09323.1| Transcription elongation factor B polypeptide 2 [Osmerus mordax]
Length = 119
Score = 70.9 bits (172), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 40/90 (44%), Positives = 57/90 (63%), Gaps = 8/90 (8%)
Query: 24 RYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQENGEFE 83
R +GI K P++Q+L+ KD+ +E+ L + G T+ A+ Q+PA VGLAFR + FE
Sbjct: 29 RIVEGILKKAPEEQRLY-KDDMLLEDSKTLGDCGFTNQTARPQAPATVGLAFRLSDDAFE 87
Query: 84 PLELTPYSSPPDLPYVMK-------ASEQA 106
L + P+SSPP+LP VMK A+EQA
Sbjct: 88 QLRVEPFSSPPELPDVMKPQDSGSTANEQA 117
>gi|119588171|gb|EAW67767.1| hCG2041310 [Homo sapiens]
Length = 118
Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/84 (46%), Positives = 54/84 (64%), Gaps = 2/84 (2%)
Query: 24 RYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQENGEFE 83
R +GI K PP +Q+L+ KD + +++G L E G TS A+ Q+PA VGLAFR + FE
Sbjct: 29 RVVEGILKRPPDEQRLY-KDYQLLDDGKTLGECGFTSQTARPQAPATVGLAFRAHDA-FE 86
Query: 84 PLELTPYSSPPDLPYVMKASEQAN 107
L + P+SSPP+L VMK E +
Sbjct: 87 ALCIEPFSSPPELLDVMKPQESGS 110
>gi|296216645|ref|XP_002754673.1| PREDICTED: transcription elongation factor B polypeptide 2-like
[Callithrix jacchus]
Length = 212
Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 57/88 (64%), Gaps = 2/88 (2%)
Query: 24 RYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQENGEFE 83
R+ + I K PP +Q+L+ KD++ +++G L E G TS A+ Q+PA VGL FR ++ FE
Sbjct: 29 RFVERILKRPPDEQRLY-KDDQLLDDGKTLGECGFTSQTARPQAPATVGLTFRVDD-TFE 86
Query: 84 PLELTPYSSPPDLPYVMKASEQANGQEN 111
L + P+SSPPDL +MK + +G +
Sbjct: 87 ALCIEPFSSPPDLLDMMKPQDSGSGAND 114
>gi|410895661|ref|XP_003961318.1| PREDICTED: transcription elongation factor B polypeptide 2-like
[Takifugu rubripes]
Length = 119
Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/90 (44%), Positives = 57/90 (63%), Gaps = 8/90 (8%)
Query: 24 RYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQENGEFE 83
R +GI K P+DQ+L+ KD++ +E+ L + G T+ A+ Q+PA VGLAFR + FE
Sbjct: 29 RIVEGILKRTPEDQRLY-KDDQILEDSKTLGDCGFTNQTARPQAPATVGLAFRINDEMFE 87
Query: 84 PLELTPYSSPPDLPYVMK-------ASEQA 106
L + +SSPP+LP VMK A+EQA
Sbjct: 88 QLHIEAFSSPPELPDVMKPQDSGSTANEQA 117
>gi|47219734|emb|CAG12656.1| unnamed protein product [Tetraodon nigroviridis]
Length = 114
Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/90 (44%), Positives = 57/90 (63%), Gaps = 8/90 (8%)
Query: 24 RYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQENGEFE 83
R +GI K P+DQ+L+ KD++ +E+ L + G T+ A+ Q+PA VGLAFR + FE
Sbjct: 24 RIVEGILKRTPEDQRLY-KDDQILEDSKTLGDCGFTNQTARPQAPATVGLAFRINDEMFE 82
Query: 84 PLELTPYSSPPDLPYVMK-------ASEQA 106
L + +SSPP+LP VMK A+EQA
Sbjct: 83 QLHIEAFSSPPELPDVMKPQDSGSTANEQA 112
>gi|317419359|emb|CBN81396.1| Transcription elongation factor B polypeptide 2 [Dicentrarchus
labrax]
Length = 114
Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/90 (44%), Positives = 57/90 (63%), Gaps = 8/90 (8%)
Query: 24 RYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQENGEFE 83
R +GI K P+DQ+L+ KD++ +E+ L + G T+ A+ Q+PA VGLAFR + FE
Sbjct: 24 RIVEGILKRTPEDQRLY-KDDQLLEDSKTLGDCGFTNQTARPQAPATVGLAFRINDEMFE 82
Query: 84 PLELTPYSSPPDLPYVMK-------ASEQA 106
L + +SSPP+LP VMK A+EQA
Sbjct: 83 QLHIEAFSSPPELPDVMKPQDSGSTANEQA 112
>gi|226468486|emb|CAX69920.1| Elongin B [Schistosoma japonicum]
Length = 125
Score = 68.9 bits (167), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/79 (46%), Positives = 50/79 (63%), Gaps = 2/79 (2%)
Query: 27 KGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQENGE-FEPL 85
+GI KV P+DQ L K EM++ L Y L S A+A +PA +GL R E FE L
Sbjct: 32 EGIIKVKPEDQMLL-KHQTEMDDEKTLSYYNLNSQTARAHTPATLGLCLRDPTTEKFETL 90
Query: 86 ELTPYSSPPDLPYVMKASE 104
++TPYS+PP+LP VM++ E
Sbjct: 91 DITPYSNPPELPEVMRSQE 109
>gi|56755747|gb|AAW26052.1| SJCHGC06119 protein [Schistosoma japonicum]
Length = 121
Score = 68.9 bits (167), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/79 (46%), Positives = 50/79 (63%), Gaps = 2/79 (2%)
Query: 27 KGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQENGE-FEPL 85
+GI KV P+DQ L K EM++ L Y L S A+A +PA +GL R E FE L
Sbjct: 28 EGIIKVKPEDQMLL-KHQTEMDDEKTLSYYNLNSQTARAHTPATLGLCLRDPTTEKFETL 86
Query: 86 ELTPYSSPPDLPYVMKASE 104
++TPYS+PP+LP VM++ E
Sbjct: 87 DITPYSNPPELPEVMRSQE 105
>gi|403262349|ref|XP_003923554.1| PREDICTED: transcription elongation factor B polypeptide 2-like
[Saimiri boliviensis boliviensis]
Length = 119
Score = 68.9 bits (167), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 39/92 (42%), Positives = 58/92 (63%), Gaps = 5/92 (5%)
Query: 24 RYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQENGEFE 83
R +GI + PP +Q+L+ KD++ +++G L E G TS A+ Q+PA VGLA R + FE
Sbjct: 29 RIVEGILQRPPDEQRLY-KDDQLLDDGKTLGECGFTSQTARPQAPATVGLALRVGDA-FE 86
Query: 84 PLELTPYSSPPDLPYVMK---ASEQANGQENI 112
L + P+SSPPDL +MK + AN Q+ +
Sbjct: 87 ALRIEPFSSPPDLLDMMKPQDSGSSANEQQAV 118
>gi|304434681|ref|NP_001134958.2| Transcription elongation factor B polypeptide 2 [Salmo salar]
gi|304376890|gb|ACI69639.2| Transcription elongation factor B polypeptide 2 [Salmo salar]
Length = 119
Score = 68.6 bits (166), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 39/90 (43%), Positives = 56/90 (62%), Gaps = 8/90 (8%)
Query: 24 RYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQENGEFE 83
R +GI K P++Q+L+ KD+ +E+ L + G T+ A+ Q+P VGLAFR + FE
Sbjct: 29 RIVEGILKRAPEEQRLY-KDDMLLEDSKTLGDCGFTNQTARPQAPGTVGLAFRLGDDAFE 87
Query: 84 PLELTPYSSPPDLPYVMK-------ASEQA 106
L + P+SSPP+LP VMK A+EQA
Sbjct: 88 QLRVEPFSSPPELPDVMKPQDSGSTANEQA 117
>gi|355752797|gb|EHH56917.1| hypothetical protein EGM_06418 [Macaca fascicularis]
Length = 118
Score = 68.6 bits (166), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 55/84 (65%), Gaps = 2/84 (2%)
Query: 24 RYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQENGEFE 83
R +G+ K PP +Q+L+ KD++ +++G L E G TS A+ +PA VGLAFR ++ FE
Sbjct: 29 RLVEGLLKRPPDEQRLY-KDDQLLDDGKTLGECGFTSQTARPLAPASVGLAFRADD-TFE 86
Query: 84 PLELTPYSSPPDLPYVMKASEQAN 107
L + P+SSPP+L VMK + N
Sbjct: 87 ALCIEPFSSPPELLDVMKPQDSGN 110
>gi|109109282|ref|XP_001113620.1| PREDICTED: transcription elongation factor B polypeptide 2 [Macaca
mulatta]
gi|355567224|gb|EHH23603.1| hypothetical protein EGK_07096 [Macaca mulatta]
Length = 118
Score = 68.2 bits (165), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 55/84 (65%), Gaps = 2/84 (2%)
Query: 24 RYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQENGEFE 83
R +G+ K PP +Q+L+ KD++ +++G L E G TS A+ +PA VGLAFR ++ FE
Sbjct: 29 RLVEGLLKRPPDEQRLY-KDDQLLDDGKTLGECGFTSQTARPLAPASVGLAFRADD-TFE 86
Query: 84 PLELTPYSSPPDLPYVMKASEQAN 107
L + P+SSPP+L VMK + N
Sbjct: 87 ALCIEPFSSPPELLDVMKPQDSGN 110
>gi|432867508|ref|XP_004071224.1| PREDICTED: transcription elongation factor B polypeptide 2-like
isoform 1 [Oryzias latipes]
Length = 119
Score = 68.2 bits (165), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 39/90 (43%), Positives = 55/90 (61%), Gaps = 8/90 (8%)
Query: 24 RYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQENGEFE 83
R +GI K PP+DQ+L+ KD+ + + L G T+ A+ Q+PA VGLAFR + FE
Sbjct: 29 RIVEGILKKPPEDQRLY-KDDVLLNDTQTLGNCGFTNQTARPQAPATVGLAFRLGDDSFE 87
Query: 84 PLELTPYSSPPDLPYVMK-------ASEQA 106
L + +S+PP+LP VMK A+EQA
Sbjct: 88 QLRIESFSTPPELPDVMKPQDSGSTANEQA 117
>gi|392346300|ref|XP_003749518.1| PREDICTED: transcription elongation factor B polypeptide 2-like
[Rattus norvegicus]
Length = 119
Score = 68.2 bits (165), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 40/87 (45%), Positives = 57/87 (65%), Gaps = 9/87 (10%)
Query: 27 KGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQENGEFEPLE 86
+GI K PP++Q+L+ KD++ + +G L E G TS A+ Q+PA V LAFR ++ E L
Sbjct: 33 EGIIKRPPEEQRLY-KDDQLLNDGKTLGECGFTSQTARPQTPATVCLAFRADD-TVEALL 90
Query: 87 LTPYSSPPDLPYVMK-------ASEQA 106
+ P+SSPP+LP VMK A+EQA
Sbjct: 91 IEPFSSPPELPDVMKPQDSGGSANEQA 117
>gi|432867510|ref|XP_004071225.1| PREDICTED: transcription elongation factor B polypeptide 2-like
isoform 2 [Oryzias latipes]
Length = 114
Score = 68.2 bits (165), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 39/90 (43%), Positives = 55/90 (61%), Gaps = 8/90 (8%)
Query: 24 RYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQENGEFE 83
R +GI K PP+DQ+L+ KD+ + + L G T+ A+ Q+PA VGLAFR + FE
Sbjct: 24 RIVEGILKKPPEDQRLY-KDDVLLNDTQTLGNCGFTNQTARPQAPATVGLAFRLGDDSFE 82
Query: 84 PLELTPYSSPPDLPYVMK-------ASEQA 106
L + +S+PP+LP VMK A+EQA
Sbjct: 83 QLRIESFSTPPELPDVMKPQDSGSTANEQA 112
>gi|62656838|ref|XP_577119.1| PREDICTED: transcription elongation factor B polypeptide 2-like
[Rattus norvegicus]
gi|109491629|ref|XP_001081217.1| PREDICTED: transcription elongation factor B polypeptide 2-like
[Rattus norvegicus]
Length = 109
Score = 67.8 bits (164), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 39/79 (49%), Positives = 53/79 (67%), Gaps = 4/79 (5%)
Query: 24 RYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQENGEFE 83
R +GI K PP++Q LF KD++ ++E L++ G TS VAKAQ PA VGL FR++ E
Sbjct: 29 RIVQGILKRPPEEQLLF-KDDQLLDESKTLRDCGFTSRVAKAQDPATVGLVFREDAS--E 85
Query: 84 PLELTPYSSPPDLPYVMKA 102
L++ PYS+P LP VMK
Sbjct: 86 GLQIHPYSTPL-LPSVMKT 103
>gi|256084413|ref|XP_002578424.1| elongin B [Schistosoma mansoni]
gi|353230097|emb|CCD76268.1| putative elongin B [Schistosoma mansoni]
Length = 121
Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/79 (46%), Positives = 50/79 (63%), Gaps = 2/79 (2%)
Query: 27 KGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQENGE-FEPL 85
+GI KV P+DQ L K EM++ L Y L S A+A +PA +GL R E FE L
Sbjct: 28 EGILKVKPEDQMLL-KHQTEMDDEKSLSYYNLNSQTARAHTPATLGLCLRDPATEKFETL 86
Query: 86 ELTPYSSPPDLPYVMKASE 104
++TPYS+PP+LP VM++ E
Sbjct: 87 DITPYSNPPELPEVMRSQE 105
>gi|403273658|ref|XP_003928623.1| PREDICTED: uncharacterized protein LOC101037906 [Saimiri
boliviensis boliviensis]
Length = 267
Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/81 (44%), Positives = 51/81 (62%), Gaps = 4/81 (4%)
Query: 24 RYHKGIT---KVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQENG 80
R H+GI + P+ +D++ +++G L E G TS A+ Q+PA VGLAFR E+
Sbjct: 104 RGHRGIQPLQRYRPRHAVDETEDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFRAED- 162
Query: 81 EFEPLELTPYSSPPDLPYVMK 101
FE L + P+SSPP+LP VMK
Sbjct: 163 TFEALCIEPFSSPPELPDVMK 183
>gi|403293312|ref|XP_003937662.1| PREDICTED: uncharacterized protein LOC101034155 [Saimiri
boliviensis boliviensis]
Length = 400
Score = 65.1 bits (157), Expect = 5e-09, Method: Composition-based stats.
Identities = 38/96 (39%), Positives = 59/96 (61%), Gaps = 2/96 (2%)
Query: 12 ITYLTLLYDKRPRYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALV 71
+T + + K R + I K PP +Q+L+ +D++ +++G L E G TS A+ Q PA V
Sbjct: 299 VTKASSMVFKLKRIVEDILKRPPDEQQLY-EDDQLLDDGKTLGECGFTSQTARPQPPARV 357
Query: 72 GLAFRQENGEFEPLELTPYSSPPDLPYVMKASEQAN 107
GLAF+ E+ FE L + +SSPP+LP VMK + +
Sbjct: 358 GLAFQTED-PFEALCIERFSSPPELPDVMKPQDSGS 392
>gi|332208722|ref|XP_003253457.1| PREDICTED: transcription elongation factor B polypeptide 2-like
[Nomascus leucogenys]
Length = 117
Score = 65.1 bits (157), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 39/90 (43%), Positives = 55/90 (61%), Gaps = 10/90 (11%)
Query: 24 RYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQENGEFE 83
R +GI K PP +Q+L ++ +++G L E G T A+ Q+PA VGLAFR ++ FE
Sbjct: 29 RVVEGILKRPPDEQRLCK--DQLLDDGKTLGECGFTRQTARPQAPATVGLAFRADDA-FE 85
Query: 84 PLELTPYSSPPDLPYVMK-------ASEQA 106
L + P+SSPP+L VMK A+EQA
Sbjct: 86 ALCIQPFSSPPELLDVMKPQDSGSSANEQA 115
>gi|293340341|ref|XP_001081215.2| PREDICTED: transcription elongation factor B polypeptide 2-like
[Rattus norvegicus]
gi|293351759|ref|XP_221241.4| PREDICTED: transcription elongation factor B polypeptide 2-like
[Rattus norvegicus]
Length = 138
Score = 64.3 bits (155), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 52/79 (65%), Gaps = 4/79 (5%)
Query: 24 RYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQENGEFE 83
R +GI K PP++Q LF KD++ ++E L++ G TS +AKAQ PA V L FR++ E
Sbjct: 29 RIVQGILKRPPEEQLLF-KDDQLLDESKTLRDCGFTSQIAKAQDPATVALVFREDAS--E 85
Query: 84 PLELTPYSSPPDLPYVMKA 102
+++ PYS+P LP VMK
Sbjct: 86 GVQIHPYSTPL-LPSVMKT 103
>gi|410973443|ref|XP_003993161.1| PREDICTED: transcription elongation factor B polypeptide 2-like
[Felis catus]
Length = 184
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 53/78 (67%), Gaps = 3/78 (3%)
Query: 24 RYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQENGEFE 83
R +G+ + PP +Q L+ K+++ +++G L E G TS +A+ Q+PA VGLAF + FE
Sbjct: 96 RIVEGV-EWPPDEQPLY-KNDQLLDDGQTLGECGFTSQMARPQAPATVGLAFWADEA-FE 152
Query: 84 PLELTPYSSPPDLPYVMK 101
L + P+SSPP+LP VMK
Sbjct: 153 TLHIEPFSSPPELPDVMK 170
>gi|391345718|ref|XP_003747131.1| PREDICTED: transcription elongation factor B polypeptide 2-like
[Metaseiulus occidentalis]
Length = 111
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 52/83 (62%), Gaps = 6/83 (7%)
Query: 24 RYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQENGEFE 83
+ +GI KV P++Q+LF+ + +EE L + GL + A+AQSPA +GLA + E
Sbjct: 29 KMIQGILKVAPEEQQLFHNETL-LEENKSLVDCGLNTNTARAQSPATIGLAIGK-----E 82
Query: 84 PLELTPYSSPPDLPYVMKASEQA 106
PLE+T S PP+LP VMK + A
Sbjct: 83 PLEITQLSLPPELPDVMKGQDSA 105
>gi|109491631|ref|XP_001081218.1| PREDICTED: transcription elongation factor B polypeptide 2-like
[Rattus norvegicus]
gi|392351482|ref|XP_003750943.1| PREDICTED: transcription elongation factor B polypeptide 2-like
[Rattus norvegicus]
gi|392351486|ref|XP_003750945.1| PREDICTED: transcription elongation factor B polypeptide 2-like
[Rattus norvegicus]
Length = 116
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/70 (50%), Positives = 46/70 (65%), Gaps = 3/70 (4%)
Query: 24 RYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQENGEFE 83
R +GI PPKDQ LF KD++ +EE L++ G TS VAKAQ PA+V LAFR++ F
Sbjct: 29 RIVQGIVNRPPKDQLLF-KDDQLLEERKTLRDCGFTSEVAKAQDPAIVTLAFREDA--FL 85
Query: 84 PLELTPYSSP 93
L +P+S P
Sbjct: 86 LLHASPFSCP 95
>gi|395836036|ref|XP_003790975.1| PREDICTED: transcription elongation factor B polypeptide 2
[Otolemur garnettii]
Length = 118
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 48/84 (57%), Gaps = 8/84 (9%)
Query: 24 RYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQENGEFE 83
R G PP D +L +++G L E G TS A+ Q+PA VGLAFR ++ FE
Sbjct: 35 RLVPGPQSGPPTDDQL-------LDDGKTLGECGFTSQTARPQAPATVGLAFRADDA-FE 86
Query: 84 PLELTPYSSPPDLPYVMKASEQAN 107
L + P+SSPP+LP VMK + +
Sbjct: 87 ALRIEPFSSPPELPDVMKPQDSGS 110
>gi|194219317|ref|XP_001498642.2| PREDICTED: transcription elongation factor B polypeptide 2-like
[Equus caballus]
Length = 148
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 42/60 (70%), Gaps = 1/60 (1%)
Query: 42 KDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQENGEFEPLELTPYSSPPDLPYVMK 101
+D++ +++G L E G TS A+ Q+PA VGLAFR + FE L + P+SSPP+LP VMK
Sbjct: 76 RDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFRADEA-FEALRIEPFSSPPELPDVMK 134
>gi|355709882|gb|EHH31346.1| hypothetical protein EGK_12402, partial [Macaca mulatta]
gi|355756484|gb|EHH60092.1| hypothetical protein EGM_11381, partial [Macaca fascicularis]
Length = 116
Score = 62.0 bits (149), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 45/66 (68%), Gaps = 1/66 (1%)
Query: 42 KDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQENGEFEPLELTPYSSPPDLPYVMK 101
+D++ +++G L E G TS A+ Q+PA VGLAFR ++ FE L + P+SSPP+LP VMK
Sbjct: 1 QDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFRADD-TFEALCIEPFSSPPELPDVMK 59
Query: 102 ASEQAN 107
+ +
Sbjct: 60 PQDSGS 65
>gi|297283303|ref|XP_001088441.2| PREDICTED: transcription elongation factor B polypeptide 2-like
[Macaca mulatta]
Length = 84
Score = 61.6 bits (148), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 45/66 (68%), Gaps = 1/66 (1%)
Query: 42 KDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQENGEFEPLELTPYSSPPDLPYVMK 101
+D++ +++G L E G TS A+ Q+PA VGLAFR ++ FE L + P+SSPP+LP VMK
Sbjct: 12 QDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFRADD-TFEALCIEPFSSPPELPDVMK 70
Query: 102 ASEQAN 107
+ +
Sbjct: 71 PQDSGS 76
>gi|397467820|ref|XP_003805600.1| PREDICTED: uncharacterized protein LOC100990645 [Pan paniscus]
Length = 172
Score = 61.6 bits (148), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 45/66 (68%), Gaps = 1/66 (1%)
Query: 42 KDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQENGEFEPLELTPYSSPPDLPYVMK 101
+D++ +++G L E G TS A+ Q+PA VGLAFR ++ FE L + P+SSPP+LP VMK
Sbjct: 100 EDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFRADD-TFEALCIEPFSSPPELPDVMK 158
Query: 102 ASEQAN 107
+ +
Sbjct: 159 PQDSGS 164
>gi|2996649|gb|AAC08452.1| elongin B [Homo sapiens]
Length = 72
Score = 61.2 bits (147), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 42/59 (71%), Gaps = 1/59 (1%)
Query: 43 DNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQENGEFEPLELTPYSSPPDLPYVMK 101
D++ +++G L E G TS A+ Q+PA VGLAFR ++ FE L + P+SSPP+LP VMK
Sbjct: 1 DDQLLDDGKTLGECGFTSQTARPQAPATVGLAFRADD-TFEALCIEPFSSPPELPDVMK 58
>gi|148683915|gb|EDL15862.1| mCG55628 [Mus musculus]
Length = 159
Score = 61.2 bits (147), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 41/81 (50%), Positives = 56/81 (69%), Gaps = 2/81 (2%)
Query: 24 RYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQENGEFE 83
R +GI K PP++Q LF KDN+ ++E L+E G TS VA+ ++PA VGLAFR + FE
Sbjct: 29 RIIEGIMKRPPEEQLLF-KDNQLLDEMKTLRECGFTSQVARPEAPATVGLAFRTGDV-FE 86
Query: 84 PLELTPYSSPPDLPYVMKASE 104
LE+ PYS P DL ++KAS+
Sbjct: 87 GLEIHPYSPPLDLLDLLKASQ 107
>gi|432119721|gb|ELK38606.1| Testisin [Myotis davidii]
Length = 307
Score = 61.2 bits (147), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 47/72 (65%), Gaps = 8/72 (11%)
Query: 42 KDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQENGEFEPLELTPYSSPPDLPYVMK 101
+D++ +++ L E G TS A+ Q+PA VGLAFR ++ FE L + P+SSPP+LP VMK
Sbjct: 235 QDDQLLDDSKTLGECGFTSQTARPQAPATVGLAFRADDA-FEALRIEPFSSPPELPDVMK 293
Query: 102 -------ASEQA 106
A+EQA
Sbjct: 294 PQDSGSSANEQA 305
>gi|340381890|ref|XP_003389454.1| PREDICTED: transcription elongation factor B polypeptide 2-like
[Amphimedon queenslandica]
Length = 125
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 52/83 (62%), Gaps = 2/83 (2%)
Query: 27 KGITKVPPKDQKLFNKD-NREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQENGEFEPL 85
+ I K PP + +L+ D N +++ L + G S+ +KAQ P+ +GL + +GE+E
Sbjct: 32 EAILKRPPDEIQLYKMDTNEALDDTRTLGDCGYKSSNSKAQDPSQIGLRLKI-DGEYENF 90
Query: 86 ELTPYSSPPDLPYVMKASEQANG 108
++TPYS+PPDLP VM+ + + G
Sbjct: 91 DITPYSTPPDLPDVMRTPDVSGG 113
>gi|354503839|ref|XP_003513988.1| PREDICTED: transcription elongation factor B polypeptide 2-like
[Cricetulus griseus]
gi|344254152|gb|EGW10256.1| Transcription elongation factor B polypeptide 2 [Cricetulus
griseus]
Length = 118
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 46/80 (57%), Gaps = 2/80 (2%)
Query: 27 KGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQENGEFEPLE 86
+G K P Q L+ DN + + L + G TS A Q+PA VGLAF + FE L
Sbjct: 32 QGFLKQEPYKQHLYKDDNL-LFDSKTLGKCGFTSQTAGPQAPATVGLAFLAGDA-FEDLR 89
Query: 87 LTPYSSPPDLPYVMKASEQA 106
+ P+SSPP+LP+VMK + A
Sbjct: 90 IEPFSSPPELPHVMKPQDSA 109
>gi|426240311|ref|XP_004014053.1| PREDICTED: transcription elongation factor B polypeptide 2-like
[Ovis aries]
Length = 104
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 46/72 (63%), Gaps = 2/72 (2%)
Query: 24 RYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQENGEFE 83
R +GI K PP +Q+L+ KD++ +++G L E G TS A+ Q+PA VGLAFR + FE
Sbjct: 29 RIVEGILKRPPDEQRLY-KDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFRADEA-FE 86
Query: 84 PLELTPYSSPPD 95
L P S+ P+
Sbjct: 87 ALPTEPPSTSPN 98
>gi|339522107|gb|AEJ84218.1| transcription elongation factor B polypeptide 2 [Capra hircus]
Length = 118
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 48/74 (64%), Gaps = 1/74 (1%)
Query: 34 PKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQENGEFEPLELTPYSSP 93
P D++ +KD++ +++G L E G TS A+ Q+PA VGLAFR + FE L + P+SSP
Sbjct: 38 PPDERRLDKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFRADEA-FEALRIEPFSSP 96
Query: 94 PDLPYVMKASEQAN 107
P+LP V K + +
Sbjct: 97 PELPGVRKPQDSGS 110
>gi|392351484|ref|XP_003750944.1| PREDICTED: transcription elongation factor B polypeptide 2-like
[Rattus norvegicus]
Length = 130
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 45/70 (64%), Gaps = 3/70 (4%)
Query: 24 RYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQENGEFE 83
R +G K PPKDQ LF KDN+ +EE L++ G+T +AK + PA++ L FR++ F+
Sbjct: 49 RIVQGFLKKPPKDQLLF-KDNQLLEERKTLRDCGITGRIAKPEDPAILTLEFRED--AFQ 105
Query: 84 PLELTPYSSP 93
L +P+S P
Sbjct: 106 LLHASPFSCP 115
>gi|293340343|ref|XP_002724676.1| PREDICTED: transcription elongation factor B polypeptide 2-like
[Rattus norvegicus]
Length = 110
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 45/70 (64%), Gaps = 3/70 (4%)
Query: 24 RYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQENGEFE 83
R +G K PPKDQ LF KDN+ +EE L++ G+T +AK + PA++ L FR++ F+
Sbjct: 29 RIVQGFLKKPPKDQLLF-KDNQLLEERKTLRDCGITGRIAKPEDPAILTLEFREDA--FQ 85
Query: 84 PLELTPYSSP 93
L +P+S P
Sbjct: 86 LLHASPFSCP 95
>gi|62656834|ref|XP_220759.3| PREDICTED: transcription elongation factor B polypeptide 2-like
[Rattus norvegicus]
gi|109491625|ref|XP_001081212.1| PREDICTED: transcription elongation factor B polypeptide 2-like
[Rattus norvegicus]
Length = 110
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 45/70 (64%), Gaps = 3/70 (4%)
Query: 24 RYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQENGEFE 83
R +GI K PP++Q LF KD++ ++E L++ G TS VAK + PALV LAFR++ F+
Sbjct: 29 RIIQGILKRPPEEQLLF-KDDQLLDESKTLRDCGFTSRVAKPEDPALVTLAFREDA--FQ 85
Query: 84 PLELTPYSSP 93
L P S P
Sbjct: 86 LLHTHPLSCP 95
>gi|148683916|gb|EDL15863.1| mCG117175, isoform CRA_a [Mus musculus]
gi|148683917|gb|EDL15864.1| mCG117175, isoform CRA_a [Mus musculus]
gi|148683918|gb|EDL15865.1| mCG117175, isoform CRA_a [Mus musculus]
gi|148683919|gb|EDL15866.1| mCG117175, isoform CRA_a [Mus musculus]
Length = 100
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 32/66 (48%), Positives = 44/66 (66%), Gaps = 2/66 (3%)
Query: 24 RYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQENGEFE 83
R +GI K PP++Q LF KDN+ ++E L+E G T VA+ ++PA VGLAFR + FE
Sbjct: 37 RIIEGIMKRPPEEQLLF-KDNQLLDEMKTLRECGFTFQVARPETPATVGLAFRTGD-VFE 94
Query: 84 PLELTP 89
LE+ P
Sbjct: 95 GLEIHP 100
>gi|12843322|dbj|BAB25941.1| unnamed protein product [Mus musculus]
Length = 100
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 32/66 (48%), Positives = 44/66 (66%), Gaps = 2/66 (3%)
Query: 24 RYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQENGEFE 83
R +GI K PP++Q LF KDN+ ++E L+E G T VA+ ++PA VGLAFR + FE
Sbjct: 37 RIIEGIMKRPPEEQLLF-KDNQLLDEMKTLRECGFTFQVARPETPATVGLAFRTGD-VFE 94
Query: 84 PLELTP 89
LE+ P
Sbjct: 95 GLEIHP 100
>gi|301792126|ref|XP_002931032.1| PREDICTED: transcription elongation factor B polypeptide 2-like
[Ailuropoda melanoleuca]
Length = 88
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 39/59 (66%), Gaps = 1/59 (1%)
Query: 24 RYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQENGEF 82
R +GI K PP +Q+L+ KD++ +++G L E G TS A+ Q+PA VGLAFR + F
Sbjct: 29 RIVEGILKRPPDEQRLY-KDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFRADEAFF 86
>gi|281353732|gb|EFB29316.1| hypothetical protein PANDA_021725 [Ailuropoda melanoleuca]
Length = 82
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 38/57 (66%), Gaps = 1/57 (1%)
Query: 24 RYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQENG 80
R +GI K PP +Q+L+ KD++ +++G L E G TS A+ Q+PA VGLAFR +
Sbjct: 26 RIVEGILKRPPDEQRLY-KDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFRADEA 81
>gi|449662670|ref|XP_002157137.2| PREDICTED: transcription elongation factor B polypeptide 2-like
[Hydra magnipapillata]
Length = 114
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Query: 36 DQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQENGEFEPLELTPYSSPPD 95
D L KD+ ++E + EYGLT K Q+PAL+GL +R +FE L + P S P +
Sbjct: 41 DMCLLYKDSI-LDENKTVAEYGLTMQTTKPQTPALIGLVYRISEMDFEELNIIPVSLPNE 99
Query: 96 LPYVMK 101
LP MK
Sbjct: 100 LPGTMK 105
>gi|344257721|gb|EGW13825.1| Transcription elongation factor B polypeptide 2 [Cricetulus
griseus]
Length = 267
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 38/54 (70%), Gaps = 1/54 (1%)
Query: 23 PRYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFR 76
R +GI K PP++Q+L+ KD++ +++G L E G TS A+ Q+PA VGLAFR
Sbjct: 31 KRIVEGILKRPPEEQRLY-KDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFR 83
>gi|291387708|ref|XP_002710228.1| PREDICTED: elongin B [Oryctolagus cuniculus]
Length = 126
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 43/73 (58%), Gaps = 2/73 (2%)
Query: 24 RYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQENGEFE 83
R +GI K P +Q+L K N+ ++ L E G TS A Q PA VGLAFR ++ F
Sbjct: 29 RNIQGIFKQLPDEQQL-CKANQLLDVYKTLGECGFTSQRAWPQVPATVGLAFRADDA-FG 86
Query: 84 PLELTPYSSPPDL 96
L + P+SSPP+L
Sbjct: 87 ALHVEPFSSPPEL 99
>gi|324526407|gb|ADY48668.1| Transcription elongation factor B polypeptide 2 [Ascaris suum]
Length = 172
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 48/95 (50%), Gaps = 15/95 (15%)
Query: 24 RYHKGITKVPPKDQKLFNKDNREMEEGNL--------LQEYGLTSAVAKAQSPALVGLAF 75
R +GI KVP KDQ L ++ME+ + L E G + A AKAQ+PA +GL
Sbjct: 85 RIVEGILKVPVKDQIL----KKQMEDSSWVLLDDRKTLAESGFSQANAKAQAPASIGLIV 140
Query: 76 RQENGEFEPLELTPYSSPPDLPYVMKASEQANGQE 110
E E L + P S PP +P M+ ++G +
Sbjct: 141 TTEEDE---LVIDPLSVPPPVPDAMRQETPSSGDQ 172
>gi|293343776|ref|XP_002725627.1| PREDICTED: transcription elongation factor B polypeptide 2-like
[Rattus norvegicus]
gi|293355677|ref|XP_002728736.1| PREDICTED: transcription elongation factor B polypeptide 2-like
[Rattus norvegicus]
Length = 150
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 51/89 (57%), Gaps = 4/89 (4%)
Query: 21 KRPRYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQENG 80
K+ KG K+ ++++ K+N+ + + L E G+T A Q+PA+V LAF Q +
Sbjct: 66 KQKHIVKGSLKL--QEEQRLCKENQLLHDRKTLGECGITGQRAGPQAPAIVCLAF-QADD 122
Query: 81 EFEPLELTPYSSPPDLPYVMKASEQANGQ 109
FE L + P+SS P LP V + S+ + GQ
Sbjct: 123 VFEALHIEPFSSLPQLPDVTR-SQDSGGQ 150
>gi|198425914|ref|XP_002120853.1| PREDICTED: similar to transcription elongation factor B (SIII),
polypeptide 2 [Ciona intestinalis]
Length = 98
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 34/51 (66%), Gaps = 1/51 (1%)
Query: 27 KGITKVPPKDQKLFNKDNRE-MEEGNLLQEYGLTSAVAKAQSPALVGLAFR 76
+GI KV P+DQ L+N N + +E+ L + G T A AKAQ+PAL+ LA +
Sbjct: 32 QGILKVTPEDQVLYNACNDQALEDNKTLGDSGFTQANAKAQAPALLKLALK 82
>gi|344238615|gb|EGV94718.1| Transcription elongation factor B polypeptide 2 [Cricetulus
griseus]
Length = 92
Score = 42.7 bits (99), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 40/84 (47%), Gaps = 9/84 (10%)
Query: 24 RYHKGITKVPPKDQK-LFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQENGEF 82
R HK K+ +F E +L ++ G T PA VGLAF + F
Sbjct: 8 RRHKTTIFTDAKESSTVFEHPKLWAREASLAKQQGRTG-------PATVGLAFLAGDA-F 59
Query: 83 EPLELTPYSSPPDLPYVMKASEQA 106
E L + P+SSPP+LP VMK + A
Sbjct: 60 EDLRIEPFSSPPELPRVMKPQDSA 83
>gi|313238141|emb|CBY13238.1| unnamed protein product [Oikopleura dioica]
Length = 129
Score = 42.0 bits (97), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 36/74 (48%), Gaps = 6/74 (8%)
Query: 32 VPPKDQKLFNKDN-----REMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQENGEFEPLE 86
V +Q+LF DN E+ + L G+T A P + L+ NG FE E
Sbjct: 47 VQKSNQRLFKMDNGKPSLEELIDAKSLVNCGITGTATTAYRPFEICLSPDFGNG-FEEAE 105
Query: 87 LTPYSSPPDLPYVM 100
+ PYSSPPDLP V
Sbjct: 106 VCPYSSPPDLPGVF 119
>gi|328712896|ref|XP_003244937.1| PREDICTED: hypothetical protein LOC100573045 [Acyrthosiphon
pisum]
Length = 102
Score = 41.6 bits (96), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 29 ITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQENGEFEPLELT 88
I K P++ +L+ K N M+ +L +Y +S P +GLA + +NGEFEPL++
Sbjct: 41 IIKTSPENLQLYYK-NVIMDGKKMLSDYFDSSLCI---DPVSIGLALKMDNGEFEPLDIV 96
Query: 89 PY 90
P+
Sbjct: 97 PF 98
>gi|268572665|ref|XP_002641379.1| C. briggsae CBR-ELB-1 protein [Caenorhabditis briggsae]
Length = 117
Score = 41.2 bits (95), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 44/84 (52%), Gaps = 8/84 (9%)
Query: 24 RYHKGITKVPPKDQKLF-----NKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQE 78
R GIT P ++ +L+ K ++ + + L + G +S AKAQSPA +GL
Sbjct: 31 RMVAGITSDPVQNMELWKLDEDGKKSQVLHDTATLVDCGYSSTNAKAQSPAALGLRLV-- 88
Query: 79 NGEFEPLELTPYSSPPDLPYVMKA 102
G E LE+ S+PP +P M+A
Sbjct: 89 -GAEEHLEIHDVSTPPPIPDTMRA 111
>gi|358342023|dbj|GAA49581.1| transcription elongation factor B polypeptide 2 [Clonorchis
sinensis]
Length = 54
Score = 40.8 bits (94), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 28 GITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQE 78
GI KVPP DQ L K EM+ L Y L + A+A PA +GL R +
Sbjct: 4 GILKVPPADQLLL-KHQTEMKNEKTLASYNLNAQTARAHMPATLGLCLRDK 53
>gi|444719066|gb|ELW59866.1| Nestin [Tupaia chinensis]
Length = 1793
Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 51/97 (52%), Gaps = 10/97 (10%)
Query: 2 DNLICQLEIIITYLTLLYDKRPRYH--KGITKVPPKDQKLFNKDNREMEEGNLLQEYGLT 59
D+++C + + L + + H +GI K PP +Q+ +KD++ +++G L E G T
Sbjct: 136 DDVVC-TRVYVRDQGLEHRELELKHVVEGILKQPPDEQR-LDKDDQPLDDGKTLGECGFT 193
Query: 60 SAVAKAQSPALVGLAFRQENGEFEPLELTPYSSPPDL 96
S + Q+PA V + F+ L + P+S P +L
Sbjct: 194 SDTSWPQTPATV------TDDTFQALCMEPFSGPMEL 224
>gi|116512834|ref|YP_811741.1| hypothetical protein LACR_2155 [Lactococcus lactis subsp. cremoris
SK11]
gi|385839154|ref|YP_005876784.1| hypothetical protein [Lactococcus lactis subsp. cremoris A76]
gi|116108488|gb|ABJ73628.1| hypothetical protein LACR_2155 [Lactococcus lactis subsp. cremoris
SK11]
gi|358750382|gb|AEU41361.1| hypothetical protein llh_10925 [Lactococcus lactis subsp. cremoris
A76]
Length = 371
Score = 38.1 bits (87), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 32/50 (64%), Gaps = 3/50 (6%)
Query: 29 ITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQE 78
I K+ + + +F KD R +E GNL+ ++G +S+VA+A AL + F+ E
Sbjct: 126 IRKILSEKEYIFAKDLRHLESGNLIWDWGASSSVARA---ALETMYFKGE 172
>gi|341893133|gb|EGT49068.1| CBN-ELB-1 protein [Caenorhabditis brenneri]
Length = 117
Score = 38.1 bits (87), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 37/65 (56%), Gaps = 6/65 (9%)
Query: 40 FNKDNRE---MEEGNLLQEYGLTSAVAKAQSPALVGLAFRQENGEFEPLELTPYSSPPDL 96
++D R+ + + L E G +S AKAQSPA +GL R N + E LE+ S+PP +
Sbjct: 49 LDEDGRKSAILHDTATLVECGFSSTNAKAQSPAALGL--RVTNSD-ESLEILCVSTPPPI 105
Query: 97 PYVMK 101
P M+
Sbjct: 106 PDAMR 110
>gi|308483844|ref|XP_003104123.1| CRE-ELB-1 protein [Caenorhabditis remanei]
gi|308258431|gb|EFP02384.1| CRE-ELB-1 protein [Caenorhabditis remanei]
Length = 117
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 8/83 (9%)
Query: 24 RYHKGITKVPPKDQKLFNKD-----NREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQE 78
R GIT+ D +L+ D + + + L E G TS+ AKAQSPA +G
Sbjct: 31 RMVSGITEESINDMELWKLDEEGRKTQILHDTATLAECGYTSSNAKAQSPASLGYRLVSV 90
Query: 79 NGEFEPLELTPYSSPPDLPYVMK 101
+ + LE+ S+PP +P M+
Sbjct: 91 DDQ---LEIIDVSTPPPIPDTMR 110
>gi|17555846|ref|NP_499517.1| Protein ELB-1 [Caenorhabditis elegans]
gi|12232100|gb|AAG49392.1|AF326942_1 RNA polymerase II transcription factor SIII p18 subunit
[Caenorhabditis elegans]
gi|3880901|emb|CAA21548.1| Protein ELB-1 [Caenorhabditis elegans]
Length = 118
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 44/88 (50%), Gaps = 17/88 (19%)
Query: 28 GITKVPPKDQKLFNKDNREMEEGN---------LLQEYGLTSAVAKAQSPALVGLAFRQE 78
GIT+ P +L+ D E+GN L + G +S AKAQ PA +GL R
Sbjct: 36 GITRDPVNHMELWKLD----EDGNKSQLLHDTATLSDAGFSSTNAKAQCPAALGL--RLT 89
Query: 79 NGEFEPLELTPYSSPPDLPYVMKASEQA 106
N E E L ++ S+ P +P M+ EQA
Sbjct: 90 NAE-EHLTISDVSTAPPIPDTMR-QEQA 115
>gi|313243538|emb|CBY42253.1| unnamed protein product [Oikopleura dioica]
Length = 73
Score = 36.2 bits (82), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 45 REMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQENGEFEPLELTPYSSPPDLPYVM 100
E+ + L G+T A P + L+ NG FE E+ PYSSPPDLP V
Sbjct: 9 EELIDAKSLVNCGITGTATTAYRPFEICLSPDFGNG-FEEAEVCPYSSPPDLPGVF 63
>gi|410897749|ref|XP_003962361.1| PREDICTED: BEN domain-containing protein 3-like [Takifugu rubripes]
Length = 821
Score = 35.4 bits (80), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 5/70 (7%)
Query: 39 LFNK--DNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQENGEFEPLEL-TPYSSPPD 95
LFN+ R+ME +L++ SA KA++P F E G+ E + + S+PPD
Sbjct: 326 LFNRFWAQRDMESARMLRKQAAASAGIKAEAPQT--YHFINEQGQEEQISVGHQQSTPPD 383
Query: 96 LPYVMKASEQ 105
LP+ +A+E+
Sbjct: 384 LPFNTQATEE 393
>gi|71018673|ref|XP_759567.1| hypothetical protein UM03420.1 [Ustilago maydis 521]
gi|46099325|gb|EAK84558.1| hypothetical protein UM03420.1 [Ustilago maydis 521]
Length = 508
Score = 34.3 bits (77), Expect = 9.7, Method: Composition-based stats.
Identities = 21/79 (26%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
Query: 19 YDKRPRYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQE 78
YD RP + G T+ P ++ D+ + ++ N+ ++ +T A+A S + + LA +++
Sbjct: 130 YDARPIHSNGYTRAPGEEHHADEDDDDDDQDWNVYDDFNMTRALAHGSSTSALALASQKD 189
Query: 79 ---NGEFEPLELTPYSSPP 94
+ L TPYS P
Sbjct: 190 AYWDASKPSLLETPYSDTP 208
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.313 0.133 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,837,031,212
Number of Sequences: 23463169
Number of extensions: 69068120
Number of successful extensions: 109423
Number of sequences better than 100.0: 161
Number of HSP's better than 100.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 109103
Number of HSP's gapped (non-prelim): 161
length of query: 114
length of database: 8,064,228,071
effective HSP length: 81
effective length of query: 33
effective length of database: 6,163,711,382
effective search space: 203402475606
effective search space used: 203402475606
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 69 (31.2 bits)