BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy9488
         (114 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P62870|ELOB_RAT Transcription elongation factor B polypeptide 2 OS=Rattus
           norvegicus GN=Tceb2 PE=1 SV=1
          Length = 118

 Score = 76.6 bits (187), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 43/90 (47%), Positives = 61/90 (67%), Gaps = 9/90 (10%)

Query: 24  RYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQENGEFE 83
           R  +GI K PP++Q+L+ KD++ +++G  L E G TS  A+ Q+PA VGLAFR ++  FE
Sbjct: 29  RIVEGILKRPPEEQRLY-KDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFRADD-TFE 86

Query: 84  PLELTPYSSPPDLPYVMK-------ASEQA 106
            L + P+SSPP+LP VMK       A+EQA
Sbjct: 87  ALRIEPFSSPPELPDVMKPQDSGGSANEQA 116


>sp|P62869|ELOB_MOUSE Transcription elongation factor B polypeptide 2 OS=Mus musculus
           GN=Tceb2 PE=1 SV=1
          Length = 118

 Score = 76.6 bits (187), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 43/90 (47%), Positives = 61/90 (67%), Gaps = 9/90 (10%)

Query: 24  RYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQENGEFE 83
           R  +GI K PP++Q+L+ KD++ +++G  L E G TS  A+ Q+PA VGLAFR ++  FE
Sbjct: 29  RIVEGILKRPPEEQRLY-KDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFRADD-TFE 86

Query: 84  PLELTPYSSPPDLPYVMK-------ASEQA 106
            L + P+SSPP+LP VMK       A+EQA
Sbjct: 87  ALRIEPFSSPPELPDVMKPQDSGGSANEQA 116


>sp|Q15370|ELOB_HUMAN Transcription elongation factor B polypeptide 2 OS=Homo sapiens
           GN=TCEB2 PE=1 SV=1
          Length = 118

 Score = 75.1 bits (183), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 39/84 (46%), Positives = 57/84 (67%), Gaps = 2/84 (2%)

Query: 24  RYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQENGEFE 83
           R  +GI K PP +Q+L+ KD++ +++G  L E G TS  A+ Q+PA VGLAFR ++  FE
Sbjct: 29  RIVEGILKRPPDEQRLY-KDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFRADD-TFE 86

Query: 84  PLELTPYSSPPDLPYVMKASEQAN 107
            L + P+SSPP+LP VMK  +  +
Sbjct: 87  ALCIEPFSSPPELPDVMKPQDSGS 110


>sp|Q8U2E6|SYL_PYRFU Leucine--tRNA ligase OS=Pyrococcus furiosus (strain ATCC 43587 /
           DSM 3638 / JCM 8422 / Vc1) GN=leuS PE=3 SV=1
          Length = 967

 Score = 30.4 bits (67), Expect = 2.9,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 7/63 (11%)

Query: 22  RPRYHKGITKVPPKDQK-------LFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLA 74
           R  YHKGI K+PP + K       L  KD  E   G ++ E+   + +++  + A++ + 
Sbjct: 402 RAEYHKGIFKIPPYEGKPVSEVKELIAKDLMEKGIGEIMYEFAEKNVISRFGNRAVIKII 461

Query: 75  FRQ 77
             Q
Sbjct: 462 HDQ 464


>sp|Q70KF4|CMYA5_MOUSE Cardiomyopathy-associated protein 5 OS=Mus musculus GN=Cmya5 PE=1
            SV=2
          Length = 3739

 Score = 29.6 bits (65), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 15/36 (41%), Positives = 19/36 (52%)

Query: 78   ENGEFEPLELTPYSSPPDLPYVMKASEQANGQENIT 113
            E  + EP EL P  S PD PY  +A E+  G   +T
Sbjct: 1191 EQNKVEPDELLPTRSAPDYPYFSEADEEEAGSSVVT 1226


>sp|P20929|NEBU_HUMAN Nebulin OS=Homo sapiens GN=NEB PE=1 SV=4
          Length = 6669

 Score = 29.3 bits (64), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 2/49 (4%)

Query: 62  VAKAQSPALVGLAFRQENGEFEPLELTPYSSPPDLPYVMKASEQANGQE 110
           VA+AQ  AL  +A+++   E +  + TP + PPD+ +  K + Q + Q+
Sbjct: 230 VAQAQK-ALSDVAYKKGLAE-QQAQFTPLADPPDIEFAKKVTNQVSKQK 276


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.313    0.133    0.377 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,784,878
Number of Sequences: 539616
Number of extensions: 1665151
Number of successful extensions: 2582
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 2567
Number of HSP's gapped (non-prelim): 13
length of query: 114
length of database: 191,569,459
effective HSP length: 82
effective length of query: 32
effective length of database: 147,320,947
effective search space: 4714270304
effective search space used: 4714270304
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)