Query psy9488
Match_columns 114
No_of_seqs 76 out of 78
Neff 3.5
Searched_HMMs 46136
Date Fri Aug 16 20:40:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9488.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9488hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01788 ElonginB Ubiquitin-lik 100.0 4.8E-55 1E-59 320.7 4.5 108 5-113 8-117 (119)
2 KOG4495|consensus 100.0 2E-41 4.4E-46 245.0 2.0 96 5-103 8-106 (110)
3 PF00240 ubiquitin: Ubiquitin 98.6 1.6E-08 3.5E-13 63.8 2.2 55 14-76 13-67 (69)
4 cd01803 Ubiquitin Ubiquitin. U 98.6 1.7E-08 3.7E-13 64.2 2.1 55 15-77 19-73 (76)
5 cd01807 GDX_N ubiquitin-like d 98.4 1.2E-07 2.5E-12 61.7 1.8 54 15-76 19-72 (74)
6 cd01793 Fubi Fubi ubiquitin-li 98.4 2E-07 4.3E-12 60.7 2.6 54 16-77 18-71 (74)
7 cd01799 Hoil1_N Ubiquitin-like 98.4 5.2E-08 1.1E-12 65.2 -0.3 56 3-59 8-64 (75)
8 cd01806 Nedd8 Nebb8-like ubiq 98.4 2.9E-07 6.2E-12 58.6 2.7 55 15-77 19-73 (76)
9 cd01810 ISG15_repeat2 ISG15 ub 98.3 3.2E-07 6.9E-12 59.8 2.6 56 14-77 16-71 (74)
10 PTZ00044 ubiquitin; Provisiona 98.3 4E-07 8.6E-12 58.7 2.3 53 17-77 21-73 (76)
11 cd01809 Scythe_N Ubiquitin-lik 98.3 3.9E-07 8.4E-12 57.4 1.7 44 15-59 19-62 (72)
12 cd01800 SF3a120_C Ubiquitin-li 98.2 6.1E-07 1.3E-11 58.9 2.3 54 16-77 17-70 (76)
13 cd01797 NIRF_N amino-terminal 98.2 6.8E-07 1.5E-11 59.9 2.4 57 14-78 20-76 (78)
14 cd01805 RAD23_N Ubiquitin-like 98.2 1.1E-06 2.5E-11 56.5 2.5 43 16-59 20-64 (77)
15 cd01812 BAG1_N Ubiquitin-like 98.2 5.6E-07 1.2E-11 56.9 0.9 44 16-60 19-62 (71)
16 smart00213 UBQ Ubiquitin homol 98.2 4.3E-07 9.4E-12 55.2 0.2 45 15-60 18-62 (64)
17 cd01794 DC_UbP_C dendritic cel 98.2 1E-06 2.3E-11 57.9 1.9 44 15-59 17-60 (70)
18 cd01808 hPLIC_N Ubiquitin-like 98.2 1.1E-06 2.3E-11 56.7 1.9 45 14-59 17-61 (71)
19 cd01798 parkin_N amino-termina 98.2 1.1E-06 2.3E-11 56.5 1.9 43 16-59 18-60 (70)
20 cd01795 USP48_C USP ubiquitin- 98.1 8.1E-07 1.7E-11 65.0 1.2 55 14-76 22-77 (107)
21 cd01792 ISG15_repeat1 ISG15 ub 98.1 1.6E-06 3.5E-11 57.4 2.3 56 14-76 20-76 (80)
22 cd01791 Ubl5 UBL5 ubiquitin-li 98.1 9.8E-07 2.1E-11 58.8 0.9 44 16-60 21-64 (73)
23 cd01796 DDI1_N DNA damage indu 98.0 2E-06 4.4E-11 56.0 0.5 44 16-60 19-63 (71)
24 cd01804 midnolin_N Ubiquitin-l 97.9 6.8E-06 1.5E-10 54.6 2.7 45 14-60 19-63 (78)
25 cd01802 AN1_N ubiquitin-like d 97.9 7.7E-06 1.7E-10 57.7 2.6 54 16-77 47-100 (103)
26 PF14560 Ubiquitin_2: Ubiquiti 97.8 6.6E-06 1.4E-10 55.1 0.7 43 17-59 24-73 (87)
27 cd01789 Alp11_N Ubiquitin-like 97.7 1.3E-05 2.7E-10 54.3 0.9 42 17-58 23-70 (84)
28 cd01769 UBL Ubiquitin-like dom 97.7 1.3E-05 2.8E-10 49.2 0.9 45 15-60 16-60 (69)
29 cd01813 UBP_N UBP ubiquitin pr 97.6 1.5E-05 3.3E-10 52.9 0.4 44 16-59 19-64 (74)
30 cd01815 BMSC_UbP_N Ubiquitin-l 97.6 3.5E-05 7.5E-10 52.8 2.1 44 15-59 19-65 (75)
31 KOG0004|consensus 97.2 0.00019 4.2E-09 55.5 2.4 53 17-77 21-73 (156)
32 cd01814 NTGP5 Ubiquitin-like N 97.1 0.00032 6.9E-09 51.7 2.5 61 15-77 24-91 (113)
33 TIGR00601 rad23 UV excision re 97.1 0.0002 4.3E-09 60.9 0.9 44 15-59 19-65 (378)
34 cd01790 Herp_N Homocysteine-re 97.0 0.00021 4.6E-09 49.1 0.4 42 15-57 22-65 (79)
35 cd01801 Tsc13_N Ubiquitin-like 96.7 0.00096 2.1E-08 43.9 1.9 47 14-60 20-68 (77)
36 KOG0003|consensus 96.2 0.00046 1E-08 51.7 -2.1 65 5-77 8-73 (128)
37 cd01763 Sumo Small ubiquitin-r 95.9 0.0091 2E-07 40.2 3.1 52 17-76 32-83 (87)
38 KOG0001|consensus 95.8 0.012 2.5E-07 34.9 3.0 53 17-77 20-72 (75)
39 PLN02560 enoyl-CoA reductase 95.8 0.0042 9.1E-08 51.4 1.4 48 14-61 21-75 (308)
40 PF13881 Rad60-SLD_2: Ubiquiti 94.5 0.031 6.7E-07 40.3 2.6 58 17-76 24-88 (111)
41 KOG0011|consensus 94.4 0.017 3.8E-07 49.4 1.1 47 16-63 20-68 (340)
42 PF11543 UN_NPL4: Nuclear pore 94.0 0.017 3.8E-07 39.2 0.3 46 15-60 22-71 (80)
43 KOG0010|consensus 93.6 0.043 9.2E-07 49.0 2.0 51 8-59 26-76 (493)
44 cd00196 UBQ Ubiquitin-like pro 92.7 0.045 9.7E-07 29.9 0.5 43 15-58 16-58 (69)
45 PF11976 Rad60-SLD: Ubiquitin- 91.4 0.065 1.4E-06 33.9 0.3 43 17-60 21-64 (72)
46 KOG4248|consensus 83.5 0.52 1.1E-05 45.8 1.1 50 11-61 17-66 (1143)
47 KOG0005|consensus 80.8 0.61 1.3E-05 32.0 0.4 42 16-58 20-61 (70)
48 PF10302 DUF2407: DUF2407 ubiq 75.0 1.4 3.1E-05 31.0 0.9 45 15-59 22-67 (97)
49 cd01811 OASL_repeat1 2'-5' oli 73.7 1.5 3.2E-05 31.0 0.7 48 13-61 17-68 (80)
50 PF14836 Ubiquitin_3: Ubiquiti 73.5 3.2 6.9E-05 29.4 2.4 41 17-58 24-69 (88)
51 PF08817 YukD: WXG100 protein 73.2 1.3 2.9E-05 29.1 0.4 18 43-60 55-72 (79)
52 PF10790 DUF2604: Protein of U 68.5 3.1 6.7E-05 29.0 1.4 34 28-61 30-63 (76)
53 PF00550 PP-binding: Phosphopa 65.4 2.7 5.8E-05 25.5 0.5 34 20-63 1-34 (67)
54 PF10209 DUF2340: Uncharacteri 54.9 6 0.00013 29.7 0.9 47 17-63 27-102 (122)
55 KOG3391|consensus 51.8 13 0.00028 28.9 2.3 38 46-102 113-150 (151)
56 PF11620 GABP-alpha: GA-bindin 47.2 13 0.00027 26.7 1.5 70 17-104 13-84 (88)
57 KOG4147|consensus 36.5 16 0.00034 27.7 0.7 18 46-63 89-107 (127)
58 KOG4583|consensus 35.1 14 0.00031 32.5 0.3 44 11-55 26-71 (391)
59 PF06487 SAP18: Sin3 associate 34.7 17 0.00037 26.7 0.6 13 47-59 99-111 (120)
60 KOG0013|consensus 22.1 38 0.00082 28.0 0.6 41 17-58 167-207 (231)
61 COG4954 Uncharacterized protei 21.8 38 0.00082 25.7 0.5 30 61-90 28-58 (135)
62 cd01767 UBX UBX (ubiquitin reg 20.9 74 0.0016 20.4 1.7 42 17-59 23-68 (77)
63 PF09178 DUF1945: Domain of un 20.7 37 0.00079 22.2 0.2 14 79-92 35-48 (51)
No 1
>cd01788 ElonginB Ubiquitin-like domain of Elongin B. Elongin B is part of an E3 ubiquitin ligase complex called VEC that activates ubiquitylation by the E2 ubiquitin-conjugating enzyme Ubc5. VEC is composed of von Hippel-Lindau tumor suppressor protein (pVHL), elongin C, cullin 2, NEDD8, and Rbx1. ElonginB binds elonginC to form the elonginBC complex which is a positive regulator of RNA polymerase II elongation factor Elongin A. The BC complex then binds VHL (von Hippel-Lindau) tumour suppressor protein to form a VCB ternary complex. Elongin B has a ubiquitin-llike domain.
Probab=100.00 E-value=4.8e-55 Score=320.71 Aligned_cols=108 Identities=39% Similarity=0.661 Sum_probs=105.2
Q ss_pred ceeehhhhhhhh--hhhhhccchhhccccCCCCccceeccccccccccchhhhccccccccccCCCceeeeEeecCCCcc
Q psy9488 5 ICQLEIIITYLT--LLYDKRPRYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQENGEF 82 (114)
Q Consensus 5 ~~~~~~i~t~~~--~~~~~LK~iIeGIlK~pP~dQrL~~kd~qlLdD~KTL~dcG~tsqtAkaQ~PA~vGLA~r~~~~~F 82 (114)
-.|||+|||++| ++|.|||||||||+|+||++|||| |++++|||+|||+|||||||+||||+||+||||||.++|+|
T Consensus 8 rR~KTTiF~dakes~tVlelK~~iegI~k~pp~dQrL~-kd~qvLeD~kTL~d~g~t~~~akaq~pA~vgLa~r~~d~~f 86 (119)
T cd01788 8 RRHKTTIFTDAKESTTVYELKRIVEGILKRPPEDQRLY-KDDQLLDDGKTLGDCGFTSQTARPQAPATVGLAFRSSDDTF 86 (119)
T ss_pred EecceEEEeecCCcccHHHHHHHHHHHhcCChhHheee-cCceeecccccHHHcCccccccccCCCCeEEEEEecCCCCc
Confidence 479999999999 999999999999999999999999 99999999999999999999999999999999999989999
Q ss_pred cceeeecCCCCCCCccccccccccCCccccC
Q psy9488 83 EPLELTPYSSPPDLPYVMKASEQANGQENIT 113 (114)
Q Consensus 83 E~L~I~P~SsPP~LPdvMk~q~s~~~~~~~~ 113 (114)
|+|+|+|||+|||||||||||++++++++++
T Consensus 87 E~l~I~p~S~pp~lPdvmk~q~~~~~~~~~~ 117 (119)
T cd01788 87 EPLRIEPFSSPPELPDVMKPQDSGSSANEQA 117 (119)
T ss_pred cceeeeeCCCCCCchhhhccccCCCcccccc
Confidence 9999999999999999999999999998875
No 2
>KOG4495|consensus
Probab=100.00 E-value=2e-41 Score=244.97 Aligned_cols=96 Identities=36% Similarity=0.478 Sum_probs=89.8
Q ss_pred ceeehhhhhhhh--hhhhhccchhhccccCCCCccceeccc-cccccccchhhhccccccccccCCCceeeeEeecCCCc
Q psy9488 5 ICQLEIIITYLT--LLYDKRPRYHKGITKVPPKDQKLFNKD-NREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQENGE 81 (114)
Q Consensus 5 ~~~~~~i~t~~~--~~~~~LK~iIeGIlK~pP~dQrL~~kd-~qlLdD~KTL~dcG~tsqtAkaQ~PA~vGLA~r~~~~~ 81 (114)
--||++|||+++ ++|.+||+|++||+|+|+++||||++| .|||||+|||+||||||||||+|+||+||| |. .|.
T Consensus 8 rR~kttif~da~es~tV~elK~~l~gi~~~Pvn~qrL~kmd~eqlL~D~ktL~d~gfts~~ak~q~pA~vgL--r~-~~~ 84 (110)
T KOG4495|consen 8 RRHKTTIFTDAKESSTVFELKRKLEGILKRPVNEQRLYKMDTEQLLDDGKTLGDCGFTSQTAKPQAPATVGL--RA-LDA 84 (110)
T ss_pred eecceeEEeecCccccHHHHHHHHHHHHhCCCcchheeecCHHHHhhccchhhhccccccccccCCCceeee--ec-ccc
Confidence 369999999999 999999999999999999999999655 499999999999999999999999999998 44 589
Q ss_pred ccceeeecCCCCCCCccccccc
Q psy9488 82 FEPLELTPYSSPPDLPYVMKAS 103 (114)
Q Consensus 82 FE~L~I~P~SsPP~LPdvMk~q 103 (114)
||.++|+++|++|++||+||++
T Consensus 85 ~e~l~iedvs~app~pd~m~qe 106 (110)
T KOG4495|consen 85 FEALCIEDVSSAPPLPDVMKQE 106 (110)
T ss_pred hhcccccccccCCCCcchhhhh
Confidence 9999999999999999999953
No 3
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=98.63 E-value=1.6e-08 Score=63.82 Aligned_cols=55 Identities=18% Similarity=0.355 Sum_probs=47.1
Q ss_pred hhhhhhhhccchhhccccCCCCccceeccccccccccchhhhccccccccccCCCceeeeEee
Q psy9488 14 YLTLLYDKRPRYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFR 76 (114)
Q Consensus 14 ~~~~~~~~LK~iIeGIlK~pP~dQrL~~kd~qlLdD~KTL~dcG~tsqtAkaQ~PA~vGLA~r 76 (114)
+...+|.+||+.|+.....||++|+|+ ..|.+|+|.+||++||+. .-++|-|.+|
T Consensus 13 ~~~~tV~~lK~~i~~~~~~~~~~~~L~-~~G~~L~d~~tL~~~~i~-------~~~~I~l~~k 67 (69)
T PF00240_consen 13 DPDDTVADLKQKIAEETGIPPEQQRLI-YNGKELDDDKTLSDYGIK-------DGSTIHLVIK 67 (69)
T ss_dssp ETTSBHHHHHHHHHHHHTSTGGGEEEE-ETTEEESTTSBTGGGTTS-------TTEEEEEEES
T ss_pred CCCCCHHHhhhhcccccccccccceee-eeeecccCcCcHHHcCCC-------CCCEEEEEEe
Confidence 445899999999999999999999999 889999999999999994 4445655554
No 4
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=98.63 E-value=1.7e-08 Score=64.24 Aligned_cols=55 Identities=20% Similarity=0.384 Sum_probs=49.1
Q ss_pred hhhhhhhccchhhccccCCCCccceeccccccccccchhhhccccccccccCCCceeeeEeec
Q psy9488 15 LTLLYDKRPRYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQ 77 (114)
Q Consensus 15 ~~~~~~~LK~iIeGIlK~pP~dQrL~~kd~qlLdD~KTL~dcG~tsqtAkaQ~PA~vGLA~r~ 77 (114)
...+|.+||++|+...+.||++|||+ .++..|+|.+||++||+ +.-++|-+.+|-
T Consensus 19 ~~~tV~~lK~~i~~~~g~~~~~q~L~-~~g~~L~d~~~L~~~~i-------~~~~~i~l~~~~ 73 (76)
T cd01803 19 PSDTIENVKAKIQDKEGIPPDQQRLI-FAGKQLEDGRTLSDYNI-------QKESTLHLVLRL 73 (76)
T ss_pred CcCcHHHHHHHHHHHhCCCHHHeEEE-ECCEECCCCCcHHHcCC-------CCCCEEEEEEEc
Confidence 34789999999999999999999999 88999999999999998 556778888874
No 5
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=98.41 E-value=1.2e-07 Score=61.70 Aligned_cols=54 Identities=17% Similarity=0.265 Sum_probs=47.1
Q ss_pred hhhhhhhccchhhccccCCCCccceeccccccccccchhhhccccccccccCCCceeeeEee
Q psy9488 15 LTLLYDKRPRYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFR 76 (114)
Q Consensus 15 ~~~~~~~LK~iIeGIlK~pP~dQrL~~kd~qlLdD~KTL~dcG~tsqtAkaQ~PA~vGLA~r 76 (114)
...+|.+||++|+.....|+++|||+ -.+..|+|.+||++||+ +.-.+|-|.+|
T Consensus 19 ~~~tV~~lK~~i~~~~gi~~~~q~L~-~~G~~L~d~~~L~~~~i-------~~~~~l~l~~~ 72 (74)
T cd01807 19 EKESVSTLKKLVSEHLNVPEEQQRLL-FKGKALADDKRLSDYSI-------GPNAKLNLVVR 72 (74)
T ss_pred CCCcHHHHHHHHHHHHCCCHHHeEEE-ECCEECCCCCCHHHCCC-------CCCCEEEEEEc
Confidence 34899999999999999999999999 88999999999999999 55556666665
No 6
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=98.40 E-value=2e-07 Score=60.73 Aligned_cols=54 Identities=17% Similarity=0.168 Sum_probs=47.8
Q ss_pred hhhhhhccchhhccccCCCCccceeccccccccccchhhhccccccccccCCCceeeeEeec
Q psy9488 16 TLLYDKRPRYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQ 77 (114)
Q Consensus 16 ~~~~~~LK~iIeGIlK~pP~dQrL~~kd~qlLdD~KTL~dcG~tsqtAkaQ~PA~vGLA~r~ 77 (114)
..||.++|.+|+.....|+++|+|+ -.+..|+|.+||++||+ +.-++|=|.+|-
T Consensus 18 ~~tV~~lK~~i~~~~gip~~~q~Li-~~Gk~L~D~~tL~~~~i-------~~~~tl~l~~~l 71 (74)
T cd01793 18 QETVSDIKAHVAGLEGIDVEDQVLL-LAGVPLEDDATLGQCGV-------EELCTLEVAGRL 71 (74)
T ss_pred cCcHHHHHHHHHhhhCCCHHHEEEE-ECCeECCCCCCHHHcCC-------CCCCEEEEEEec
Confidence 4899999999999999999999999 88999999999999999 556677777764
No 7
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=98.39 E-value=5.2e-08 Score=65.17 Aligned_cols=56 Identities=14% Similarity=0.055 Sum_probs=45.2
Q ss_pred ccceeehhhhhhhh-hhhhhccchhhccccCCCCccceeccccccccccchhhhcccc
Q psy9488 3 NLICQLEIIITYLT-LLYDKRPRYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLT 59 (114)
Q Consensus 3 ~~~~~~~~i~t~~~-~~~~~LK~iIeGIlK~pP~dQrL~~kd~qlLdD~KTL~dcG~t 59 (114)
.+-|-.++.++-.. .||.+||++|+.....||+.|||| ....+.+|.+||++||+.
T Consensus 8 ~~~~~~t~~l~v~~~~TV~~lK~kI~~~~gip~~~QrL~-~G~~L~dD~~tL~~ygi~ 64 (75)
T cd01799 8 AQSHTVTIWLTVRPDMTVAQLKDKVFLDYGFPPAVQRWV-IGQRLARDQETLYSHGIR 64 (75)
T ss_pred cccCCCeEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEE-cCCeeCCCcCCHHHcCCC
Confidence 34455565555444 899999999999999999999997 655667899999999984
No 8
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=98.36 E-value=2.9e-07 Score=58.57 Aligned_cols=55 Identities=16% Similarity=0.308 Sum_probs=47.9
Q ss_pred hhhhhhhccchhhccccCCCCccceeccccccccccchhhhccccccccccCCCceeeeEeec
Q psy9488 15 LTLLYDKRPRYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQ 77 (114)
Q Consensus 15 ~~~~~~~LK~iIeGIlK~pP~dQrL~~kd~qlLdD~KTL~dcG~tsqtAkaQ~PA~vGLA~r~ 77 (114)
...+|.+||..|+.....||++|||+ .++..|+|++||++||+ +.-.+|=|.++.
T Consensus 19 ~~~tv~~lK~~i~~~~g~~~~~qrL~-~~g~~L~d~~tl~~~~i-------~~g~~i~l~~~~ 73 (76)
T cd01806 19 PTDKVERIKERVEEKEGIPPQQQRLI-YSGKQMNDDKTAADYKL-------EGGSVLHLVLAL 73 (76)
T ss_pred CCCCHHHHHHHHhHhhCCChhhEEEE-ECCeEccCCCCHHHcCC-------CCCCEEEEEEEc
Confidence 34789999999999999999999999 88999999999999998 555667777664
No 9
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=98.34 E-value=3.2e-07 Score=59.76 Aligned_cols=56 Identities=25% Similarity=0.227 Sum_probs=48.1
Q ss_pred hhhhhhhhccchhhccccCCCCccceeccccccccccchhhhccccccccccCCCceeeeEeec
Q psy9488 14 YLTLLYDKRPRYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQ 77 (114)
Q Consensus 14 ~~~~~~~~LK~iIeGIlK~pP~dQrL~~kd~qlLdD~KTL~dcG~tsqtAkaQ~PA~vGLA~r~ 77 (114)
....+|.+||++|+.....|+++|+|+ ..+..|+|.+||++||+ +.-.+|-|.+|.
T Consensus 16 ~~~~tV~~lK~~I~~~~gi~~~~q~L~-~~G~~L~D~~tL~~~~i-------~~~~tl~l~~~l 71 (74)
T cd01810 16 QLTQTVATLKQQVSQRERVQADQFWLS-FEGRPMEDEHPLGEYGL-------KPGCTVFMNLRL 71 (74)
T ss_pred CCcChHHHHHHHHHHHhCCCHHHeEEE-ECCEECCCCCCHHHcCC-------CCCCEEEEEEEc
Confidence 345789999999999999999999999 88999999999999999 555567677764
No 10
>PTZ00044 ubiquitin; Provisional
Probab=98.30 E-value=4e-07 Score=58.71 Aligned_cols=53 Identities=9% Similarity=0.134 Sum_probs=47.2
Q ss_pred hhhhhccchhhccccCCCCccceeccccccccccchhhhccccccccccCCCceeeeEeec
Q psy9488 17 LLYDKRPRYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQ 77 (114)
Q Consensus 17 ~~~~~LK~iIeGIlK~pP~dQrL~~kd~qlLdD~KTL~dcG~tsqtAkaQ~PA~vGLA~r~ 77 (114)
.||.+||..|+....+||++|||+ -.+..|+|.+||++||+ +.-++|-+.+|.
T Consensus 21 ~tv~~lK~~i~~~~gi~~~~q~L~-~~g~~L~d~~~l~~~~i-------~~~~~i~l~~~~ 73 (76)
T PTZ00044 21 NTVQQVKMALQEKEGIDVKQIRLI-YSGKQMSDDLKLSDYKV-------VPGSTIHMVLQL 73 (76)
T ss_pred CcHHHHHHHHHHHHCCCHHHeEEE-ECCEEccCCCcHHHcCC-------CCCCEEEEEEEc
Confidence 789999999999999999999999 88999999999999998 555677777764
No 11
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=98.27 E-value=3.9e-07 Score=57.44 Aligned_cols=44 Identities=16% Similarity=0.213 Sum_probs=40.5
Q ss_pred hhhhhhhccchhhccccCCCCccceeccccccccccchhhhcccc
Q psy9488 15 LTLLYDKRPRYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLT 59 (114)
Q Consensus 15 ~~~~~~~LK~iIeGIlK~pP~dQrL~~kd~qlLdD~KTL~dcG~t 59 (114)
...+|.+||+.|+.....||+.|+|+ .++.+|+|.+||++||..
T Consensus 19 ~~~tv~~lK~~i~~~~gi~~~~q~L~-~~g~~L~d~~~L~~~~i~ 62 (72)
T cd01809 19 EEITVLDLKEKIAEEVGIPVEQQRLI-YSGRVLKDDETLSEYKVE 62 (72)
T ss_pred CCCcHHHHHHHHHHHHCcCHHHeEEE-ECCEECCCcCcHHHCCCC
Confidence 34789999999999999999999999 789999999999999983
No 12
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=98.24 E-value=6.1e-07 Score=58.94 Aligned_cols=54 Identities=19% Similarity=0.183 Sum_probs=46.3
Q ss_pred hhhhhhccchhhccccCCCCccceeccccccccccchhhhccccccccccCCCceeeeEeec
Q psy9488 16 TLLYDKRPRYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQ 77 (114)
Q Consensus 16 ~~~~~~LK~iIeGIlK~pP~dQrL~~kd~qlLdD~KTL~dcG~tsqtAkaQ~PA~vGLA~r~ 77 (114)
..+|.++|.+|+.+.-.||+.|+|+ -.+.+|+|.+||++||+ +.-.+|-+.++.
T Consensus 17 ~~TV~~lK~~i~~~~gip~~~q~L~-~~G~~L~d~~tL~~~~i-------~~g~~l~v~~~~ 70 (76)
T cd01800 17 SDPVSVLKVKIHEETGMPAGKQKLQ-YEGIFIKDSNSLAYYNL-------ANGTIIHLQLKE 70 (76)
T ss_pred CCcHHHHHHHHHHHHCCCHHHEEEE-ECCEEcCCCCcHHHcCC-------CCCCEEEEEEec
Confidence 4789999999999999999999999 77889999999999998 445566666654
No 13
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=98.23 E-value=6.8e-07 Score=59.85 Aligned_cols=57 Identities=23% Similarity=0.359 Sum_probs=50.7
Q ss_pred hhhhhhhhccchhhccccCCCCccceeccccccccccchhhhccccccccccCCCceeeeEeecC
Q psy9488 14 YLTLLYDKRPRYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQE 78 (114)
Q Consensus 14 ~~~~~~~~LK~iIeGIlK~pP~dQrL~~kd~qlLdD~KTL~dcG~tsqtAkaQ~PA~vGLA~r~~ 78 (114)
....||.++|++|+.-...|++.|||+ -.+..|+|+.||++||+ +.-.+|=|.+|.+
T Consensus 20 ~~~~TV~~lK~~i~~~~gi~~~~QrLi-~~Gk~L~D~~tL~~y~i-------~~~~~i~l~~~~~ 76 (78)
T cd01797 20 SRLTKVEELREKIQELFNVEPECQRLF-YRGKQMEDGHTLFDYNV-------GLNDIIQLLVRQD 76 (78)
T ss_pred CCcCcHHHHHHHHHHHhCCCHHHeEEE-eCCEECCCCCCHHHcCC-------CCCCEEEEEEecC
Confidence 445899999999999999999999999 88999999999999999 6677888888863
No 14
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=98.18 E-value=1.1e-06 Score=56.53 Aligned_cols=43 Identities=19% Similarity=0.283 Sum_probs=40.0
Q ss_pred hhhhhhccchhhccccC--CCCccceeccccccccccchhhhcccc
Q psy9488 16 TLLYDKRPRYHKGITKV--PPKDQKLFNKDNREMEEGNLLQEYGLT 59 (114)
Q Consensus 16 ~~~~~~LK~iIeGIlK~--pP~dQrL~~kd~qlLdD~KTL~dcG~t 59 (114)
..+|.+||++|+....+ ||++|+|+ ..+..|+|.+||++||+.
T Consensus 20 ~~TV~~lK~~i~~~~~i~~~~~~q~L~-~~G~~L~d~~~L~~~~i~ 64 (77)
T cd01805 20 DDTVAELKEKIEEEKGCDYPPEQQKLI-YSGKILKDDTTLEEYKID 64 (77)
T ss_pred CCcHHHHHHHHHHhhCCCCChhHeEEE-ECCEEccCCCCHHHcCCC
Confidence 37899999999999998 99999999 789999999999999994
No 15
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=98.17 E-value=5.6e-07 Score=56.87 Aligned_cols=44 Identities=23% Similarity=0.380 Sum_probs=39.9
Q ss_pred hhhhhhccchhhccccCCCCccceeccccccccccchhhhccccc
Q psy9488 16 TLLYDKRPRYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTS 60 (114)
Q Consensus 16 ~~~~~~LK~iIeGIlK~pP~dQrL~~kd~qlLdD~KTL~dcG~ts 60 (114)
..+|.+||++|+.....||+.|||+ ..+..|+|.+||++||+.+
T Consensus 19 ~~tv~~lK~~i~~~~gi~~~~q~L~-~~g~~l~d~~~L~~~~i~~ 62 (71)
T cd01812 19 QATFGDLKKMLAPVTGVEPRDQKLI-FKGKERDDAETLDMSGVKD 62 (71)
T ss_pred CCcHHHHHHHHHHhhCCChHHeEEe-eCCcccCccCcHHHcCCCC
Confidence 3789999999999999999999999 6688899999999999843
No 16
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=98.16 E-value=4.3e-07 Score=55.24 Aligned_cols=45 Identities=16% Similarity=0.283 Sum_probs=40.5
Q ss_pred hhhhhhhccchhhccccCCCCccceeccccccccccchhhhccccc
Q psy9488 15 LTLLYDKRPRYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTS 60 (114)
Q Consensus 15 ~~~~~~~LK~iIeGIlK~pP~dQrL~~kd~qlLdD~KTL~dcG~ts 60 (114)
...+|.+||.+|+..++.||+.|+|+ ..+..|+|.+||++||+..
T Consensus 18 ~~~tv~~lk~~i~~~~~~~~~~~~L~-~~g~~L~d~~tL~~~~i~~ 62 (64)
T smart00213 18 PSDTVSELKEKIAELTGIPVEQQRLI-YKGKVLEDDRTLADYNIQD 62 (64)
T ss_pred CCCcHHHHHHHHHHHHCCCHHHEEEE-ECCEECCCCCCHHHcCCcC
Confidence 34789999999999999999999998 6688999999999999854
No 17
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=98.15 E-value=1e-06 Score=57.87 Aligned_cols=44 Identities=16% Similarity=0.121 Sum_probs=40.8
Q ss_pred hhhhhhhccchhhccccCCCCccceeccccccccccchhhhcccc
Q psy9488 15 LTLLYDKRPRYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLT 59 (114)
Q Consensus 15 ~~~~~~~LK~iIeGIlK~pP~dQrL~~kd~qlLdD~KTL~dcG~t 59 (114)
...||.+||++|+.-...|+++|||| -.+..|+|.+||++||+.
T Consensus 17 ~~~TV~~lK~~I~~~~gi~~~~q~Li-~~G~~L~D~~~l~~~~i~ 60 (70)
T cd01794 17 SKDTVGQLKKQLQAAEGVDPCCQRWF-FSGKLLTDKTRLQETKIQ 60 (70)
T ss_pred CcChHHHHHHHHHHHhCCCHHHeEEE-ECCeECCCCCCHHHcCCC
Confidence 34799999999999999999999999 889999999999999984
No 18
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=98.15 E-value=1.1e-06 Score=56.71 Aligned_cols=45 Identities=7% Similarity=-0.036 Sum_probs=40.2
Q ss_pred hhhhhhhhccchhhccccCCCCccceeccccccccccchhhhcccc
Q psy9488 14 YLTLLYDKRPRYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLT 59 (114)
Q Consensus 14 ~~~~~~~~LK~iIeGIlK~pP~dQrL~~kd~qlLdD~KTL~dcG~t 59 (114)
....+|.+||+.|+.-.+.|++.|+|+ -.+.+|+|.+||+|||+.
T Consensus 17 ~~~~TV~~lK~~I~~~~~i~~~~~~Li-~~Gk~L~d~~tL~~~~i~ 61 (71)
T cd01808 17 AEDASVKDFKEAVSKKFKANQEQLVLI-FAGKILKDTDTLTQHNIK 61 (71)
T ss_pred CCCChHHHHHHHHHHHhCCCHHHEEEE-ECCeEcCCCCcHHHcCCC
Confidence 445789999999998888899999998 788999999999999993
No 19
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=98.15 E-value=1.1e-06 Score=56.45 Aligned_cols=43 Identities=16% Similarity=0.206 Sum_probs=40.4
Q ss_pred hhhhhhccchhhccccCCCCccceeccccccccccchhhhcccc
Q psy9488 16 TLLYDKRPRYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLT 59 (114)
Q Consensus 16 ~~~~~~LK~iIeGIlK~pP~dQrL~~kd~qlLdD~KTL~dcG~t 59 (114)
..+|.++|++|+.....|+++|+|+ -.+..|+|.+||++||++
T Consensus 18 ~~tV~~lK~~i~~~~gi~~~~q~Li-~~G~~L~d~~~l~~~~i~ 60 (70)
T cd01798 18 DTDIKQLKEVVAKRQGVPPDQLRVI-FAGKELRNTTTIQECDLG 60 (70)
T ss_pred CChHHHHHHHHHHHHCCCHHHeEEE-ECCeECCCCCcHHHcCCC
Confidence 3899999999999999999999999 889999999999999994
No 20
>cd01795 USP48_C USP ubiquitin-specific protease. The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,
Probab=98.13 E-value=8.1e-07 Score=65.01 Aligned_cols=55 Identities=16% Similarity=0.087 Sum_probs=47.3
Q ss_pred hhhhhhhhccchhhccccCCCCccceeccccc-cccccchhhhccccccccccCCCceeeeEee
Q psy9488 14 YLTLLYDKRPRYHKGITKVPPKDQKLFNKDNR-EMEEGNLLQEYGLTSAVAKAQSPALVGLAFR 76 (114)
Q Consensus 14 ~~~~~~~~LK~iIeGIlK~pP~dQrL~~kd~q-lLdD~KTL~dcG~tsqtAkaQ~PA~vGLA~r 76 (114)
+...||.+||..|.-.+.+||.+|+|+ -+++ |-||++||++||+ ++-+.|-|-.+
T Consensus 22 ~~~~TVg~LK~lImQ~f~V~P~dQkL~-~dG~~L~DDsrTLssyGv-------~sgSvl~Llid 77 (107)
T cd01795 22 SANQTLKELKIQIMHAFSVAPFDQNLS-IDGKILSDDCATLGTLGV-------IPESVILLKAD 77 (107)
T ss_pred CccccHHHHHHHHHHHhcCCcccceee-ecCceeccCCccHHhcCC-------CCCCEEEEEec
Confidence 455899999999999999999999999 6566 6788999999999 77777777654
No 21
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=98.12 E-value=1.6e-06 Score=57.42 Aligned_cols=56 Identities=18% Similarity=0.166 Sum_probs=45.6
Q ss_pred hhhhhhhhccchhhccccCCCCccceec-cccccccccchhhhccccccccccCCCceeeeEee
Q psy9488 14 YLTLLYDKRPRYHKGITKVPPKDQKLFN-KDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFR 76 (114)
Q Consensus 14 ~~~~~~~~LK~iIeGIlK~pP~dQrL~~-kd~qlLdD~KTL~dcG~tsqtAkaQ~PA~vGLA~r 76 (114)
+...||.+||+.|+.-.+.|++.|||.. -++.+|+|.+||++||+ +.-.+|=|.++
T Consensus 20 ~~~~TV~~lK~~I~~~~~i~~~~qrL~~~~~G~~L~D~~tL~~~gi-------~~gs~l~l~~~ 76 (80)
T cd01792 20 RDSMTVSELKQQIAQKIGVPAFQQRLAHLDSREVLQDGVPLVSQGL-------GPGSTVLLVVQ 76 (80)
T ss_pred CCCCcHHHHHHHHHHHhCCCHHHEEEEeccCCCCCCCCCCHHHcCC-------CCCCEEEEEEE
Confidence 4458999999999999999999999931 47889999999999999 44445556555
No 22
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=98.10 E-value=9.8e-07 Score=58.75 Aligned_cols=44 Identities=14% Similarity=0.048 Sum_probs=40.3
Q ss_pred hhhhhhccchhhccccCCCCccceeccccccccccchhhhccccc
Q psy9488 16 TLLYDKRPRYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTS 60 (114)
Q Consensus 16 ~~~~~~LK~iIeGIlK~pP~dQrL~~kd~qlLdD~KTL~dcG~ts 60 (114)
..||.+||..|+.-.+.||+.|||. ..+.+|+|++||++||+.+
T Consensus 21 ~~TV~~LK~~I~~~~~~~~~~qrLi-~~Gk~L~D~~tL~~ygi~~ 64 (73)
T cd01791 21 DDTIGDLKKLIAAQTGTRPEKIVLK-KWYTIFKDHISLGDYEIHD 64 (73)
T ss_pred CCcHHHHHHHHHHHhCCChHHEEEE-eCCcCCCCCCCHHHcCCCC
Confidence 4899999999988889999999999 6799999999999999954
No 23
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=97.96 E-value=2e-06 Score=56.04 Aligned_cols=44 Identities=23% Similarity=0.414 Sum_probs=39.1
Q ss_pred hhhhhhccchhhccccCCCCccceecccccccccc-chhhhccccc
Q psy9488 16 TLLYDKRPRYHKGITKVPPKDQKLFNKDNREMEEG-NLLQEYGLTS 60 (114)
Q Consensus 16 ~~~~~~LK~iIeGIlK~pP~dQrL~~kd~qlLdD~-KTL~dcG~ts 60 (114)
..+|.+||++|+....+|+++|||+ ..+..|+|. ++|++||+..
T Consensus 19 ~~TV~~lK~~I~~~~gip~~~q~Li-~~Gk~L~D~~~~L~~~gi~~ 63 (71)
T cd01796 19 DLELENFKALCEAESGIPASQQQLI-YNGRELVDNKRLLALYGVKD 63 (71)
T ss_pred cCCHHHHHHHHHHHhCCCHHHeEEE-ECCeEccCCcccHHHcCCCC
Confidence 3799999999999999999999999 778888776 7999999954
No 24
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=97.94 E-value=6.8e-06 Score=54.57 Aligned_cols=45 Identities=20% Similarity=0.219 Sum_probs=39.8
Q ss_pred hhhhhhhhccchhhccccCCCCccceeccccccccccchhhhccccc
Q psy9488 14 YLTLLYDKRPRYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTS 60 (114)
Q Consensus 14 ~~~~~~~~LK~iIeGIlK~pP~dQrL~~kd~qlLdD~KTL~dcG~ts 60 (114)
+...||.+||+.|+.-.+.|++.|||+ ..+.+|+|. ||++||+.+
T Consensus 19 ~~~~TV~~LK~~I~~~~~~~~~~qrL~-~~Gk~L~d~-~L~~~gi~~ 63 (78)
T cd01804 19 PPDETVEGLKKRISQRLKVPKERLALL-HRETRLSSG-KLQDLGLGD 63 (78)
T ss_pred CCcCHHHHHHHHHHHHhCCChHHEEEE-ECCcCCCCC-cHHHcCCCC
Confidence 345789999999999999999999998 678899999 999999943
No 25
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=97.90 E-value=7.7e-06 Score=57.70 Aligned_cols=54 Identities=17% Similarity=0.211 Sum_probs=45.8
Q ss_pred hhhhhhccchhhccccCCCCccceeccccccccccchhhhccccccccccCCCceeeeEeec
Q psy9488 16 TLLYDKRPRYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQ 77 (114)
Q Consensus 16 ~~~~~~LK~iIeGIlK~pP~dQrL~~kd~qlLdD~KTL~dcG~tsqtAkaQ~PA~vGLA~r~ 77 (114)
..+|.+||.+|+.....|+++|+|+ -.+..|+|++||++||++. =.+|=|.+|-
T Consensus 47 ~~TV~~lK~kI~~~~gip~~~QrLi-~~Gk~L~D~~tL~dy~I~~-------~stL~l~~~l 100 (103)
T cd01802 47 FETVISVKAKIQRLEGIPVAQQHLI-WNNMELEDEYCLNDYNISE-------GCTLKLVLAM 100 (103)
T ss_pred CCcHHHHHHHHHHHhCCChHHEEEE-ECCEECCCCCcHHHcCCCC-------CCEEEEEEec
Confidence 3789999999999999999999999 8899999999999999943 3355566553
No 26
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=97.79 E-value=6.6e-06 Score=55.12 Aligned_cols=43 Identities=23% Similarity=0.415 Sum_probs=35.6
Q ss_pred hhhhhccchhhccccCCCCccceecc---cc----ccccccchhhhcccc
Q psy9488 17 LLYDKRPRYHKGITKVPPKDQKLFNK---DN----REMEEGNLLQEYGLT 59 (114)
Q Consensus 17 ~~~~~LK~iIeGIlK~pP~dQrL~~k---d~----qlLdD~KTL~dcG~t 59 (114)
.||.+||.+|+.++..||++|||+.+ ++ .+.+|.++|+.||+.
T Consensus 24 ~Tv~eLK~kl~~~~Gi~~~~m~L~l~~~~~~~~~~~~~dd~~~L~~y~~~ 73 (87)
T PF14560_consen 24 ITVSELKQKLEKLTGIPPSDMRLQLKSDKDDSKIEELDDDDATLGSYGIK 73 (87)
T ss_dssp SBHHHHHHHHHHHHTS-TTTEEEEEE-TSSSSEEEESSGSSSBCCHHT-S
T ss_pred CCHHHHHHHHHHHhCCCcccEEEEEEecCCCccccccCCCccEeecCCCC
Confidence 78999999999999999999999976 22 246889999999984
No 27
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=97.70 E-value=1.3e-05 Score=54.27 Aligned_cols=42 Identities=17% Similarity=0.203 Sum_probs=36.4
Q ss_pred hhhhhccchhhccccCCCCccceecccc------ccccccchhhhccc
Q psy9488 17 LLYDKRPRYHKGITKVPPKDQKLFNKDN------REMEEGNLLQEYGL 58 (114)
Q Consensus 17 ~~~~~LK~iIeGIlK~pP~dQrL~~kd~------qlLdD~KTL~dcG~ 58 (114)
.+|.+||.+++.+...||++|||...++ .+.+|.++|+.||.
T Consensus 23 ~Tv~~lK~kl~~~~G~~~~~mrL~l~~~~~~~~~~l~~d~~~L~~y~~ 70 (84)
T cd01789 23 LTIAELKKKLELVVGTPASSMRLQLFDGDDKLVSKLDDDDALLGSYPV 70 (84)
T ss_pred CcHHHHHHHHHHHHCCCccceEEEEEcCCCCeEeecCCCccEeeeccC
Confidence 7899999999999999999999943332 36799999999997
No 28
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=97.69 E-value=1.3e-05 Score=49.16 Aligned_cols=45 Identities=18% Similarity=0.307 Sum_probs=40.3
Q ss_pred hhhhhhhccchhhccccCCCCccceeccccccccccchhhhccccc
Q psy9488 15 LTLLYDKRPRYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTS 60 (114)
Q Consensus 15 ~~~~~~~LK~iIeGIlK~pP~dQrL~~kd~qlLdD~KTL~dcG~ts 60 (114)
...++-+||++|+.....|++.|+|+ ..+..|+|.++|++||+.+
T Consensus 16 ~~~ti~~lK~~i~~~~~~~~~~~~l~-~~g~~l~d~~~l~~~~v~~ 60 (69)
T cd01769 16 PDDTVAELKAKIAAKEGVPPEQQRLI-YAGKILKDDKTLSDYGIQD 60 (69)
T ss_pred CCChHHHHHHHHHHHHCcChHHEEEE-ECCcCCCCcCCHHHCCCCC
Confidence 34789999999999999999999997 6778999999999999843
No 29
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=97.62 E-value=1.5e-05 Score=52.86 Aligned_cols=44 Identities=20% Similarity=0.215 Sum_probs=39.4
Q ss_pred hhhhhhccchhhccccCCCCccceecc--ccccccccchhhhcccc
Q psy9488 16 TLLYDKRPRYHKGITKVPPKDQKLFNK--DNREMEEGNLLQEYGLT 59 (114)
Q Consensus 16 ~~~~~~LK~iIeGIlK~pP~dQrL~~k--d~qlLdD~KTL~dcG~t 59 (114)
..||.+||+.|+..+.+||+.|+|... .+.+|.|..||++||+.
T Consensus 19 ~~Tv~~lK~~i~~~tgvp~~~QKLi~~~~~Gk~l~D~~~L~~~~i~ 64 (74)
T cd01813 19 EDTVLDLKQFIKTLTGVLPERQKLLGLKVKGKPAEDDVKISALKLK 64 (74)
T ss_pred CCCHHHHHHHHHHHHCCCHHHEEEEeecccCCcCCCCcCHHHcCCC
Confidence 378999999999999999999999841 57799999999999985
No 30
>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.
Probab=97.61 E-value=3.5e-05 Score=52.81 Aligned_cols=44 Identities=16% Similarity=0.237 Sum_probs=37.8
Q ss_pred hhhhhhhccchhhcccc--CC-CCccceeccccccccccchhhhcccc
Q psy9488 15 LTLLYDKRPRYHKGITK--VP-PKDQKLFNKDNREMEEGNLLQEYGLT 59 (114)
Q Consensus 15 ~~~~~~~LK~iIeGIlK--~p-P~dQrL~~kd~qlLdD~KTL~dcG~t 59 (114)
-..||.+||.+|+.-.. .+ |+.|||. -.+.+|+|.+||++||+.
T Consensus 19 ~~~TV~~LK~kI~~~~~egi~~~dqQrLI-y~GKiL~D~~TL~dygI~ 65 (75)
T cd01815 19 GGYQVSTLKQLIAAQLPDSLPDPELIDLI-HCGRKLKDDQTLDFYGIQ 65 (75)
T ss_pred ccCcHHHHHHHHHHhhccCCCChHHeEEE-eCCcCCCCCCcHHHcCCC
Confidence 34799999999998863 55 7889999 888899999999999983
No 31
>KOG0004|consensus
Probab=97.24 E-value=0.00019 Score=55.46 Aligned_cols=53 Identities=23% Similarity=0.416 Sum_probs=45.3
Q ss_pred hhhhhccchhhccccCCCCccceeccccccccccchhhhccccccccccCCCceeeeEeec
Q psy9488 17 LLYDKRPRYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQ 77 (114)
Q Consensus 17 ~~~~~LK~iIeGIlK~pP~dQrL~~kd~qlLdD~KTL~dcG~tsqtAkaQ~PA~vGLA~r~ 77 (114)
.+++++|..||.=-..||+.|||+ -.+.=|+|.+||+||++ |.=+++-|.+|-
T Consensus 21 ~ti~~~Kakiq~~egIp~dqqrli-fag~qLedgrtlSDY~I-------qkestl~l~l~l 73 (156)
T KOG0004|consen 21 DTIDNVKAKIQDKEGIPPDQQRLI-FAGKQLEDGRTLSDYNI-------QKESTLHLVLRL 73 (156)
T ss_pred ccHHHHHHhhhcccCCCchhhhhh-hhhcccccCCccccccc-------cccceEEEEEEe
Confidence 789999999999999999999999 77777888899999999 555666666654
No 32
>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.
Probab=97.13 E-value=0.00032 Score=51.72 Aligned_cols=61 Identities=10% Similarity=-0.014 Sum_probs=45.7
Q ss_pred hhhhhhhccchhhccc--c-----CCCCccceeccccccccccchhhhccccccccccCCCceeeeEeec
Q psy9488 15 LTLLYDKRPRYHKGIT--K-----VPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQ 77 (114)
Q Consensus 15 ~~~~~~~LK~iIeGIl--K-----~pP~dQrL~~kd~qlLdD~KTL~dcG~tsqtAkaQ~PA~vGLA~r~ 77 (114)
...||.+||+.|+.-- . .++++|+|+ ..+.+|+|.+||+||+..-..- ++...|+=+++|.
T Consensus 24 ~sdTV~~lKekI~~~~p~~ke~~P~~~~~qKLI-ysGKiLeD~~TL~d~~~p~g~~-~~~~~TmHvvlr~ 91 (113)
T cd01814 24 AATTVDFLKERVVSQWPKDKEVGPKTVNEVKLI-SAGKILENSKTVGECRSPVGDI-AGGVITMHVVVQP 91 (113)
T ss_pred hhhHHHHHHHHHHHhcccccccCCCCHHHeEEE-eCCeecCCCCcHHHhCCccccc-CCCceEEEEEecC
Confidence 3479999999998333 1 559999999 8899999999999999432222 4666677777763
No 33
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.06 E-value=0.0002 Score=60.87 Aligned_cols=44 Identities=14% Similarity=0.169 Sum_probs=40.3
Q ss_pred hhhhhhhccchhhcccc---CCCCccceeccccccccccchhhhcccc
Q psy9488 15 LTLLYDKRPRYHKGITK---VPPKDQKLFNKDNREMEEGNLLQEYGLT 59 (114)
Q Consensus 15 ~~~~~~~LK~iIeGIlK---~pP~dQrL~~kd~qlLdD~KTL~dcG~t 59 (114)
...||.+||++|+.... .|++.|||+ ..+.+|+|.+||++||+.
T Consensus 19 ~~~TV~dLK~kI~~~~g~~~ip~~~QkLI-y~GkiL~Dd~tL~dy~I~ 65 (378)
T TIGR00601 19 PDETVKELKEKIEAEQGKDAYPVAQQKLI-YSGKILSDDKTVREYKIK 65 (378)
T ss_pred CcChHHHHHHHHHHhhCCCCCChhHeEEE-ECCEECCCCCcHHHcCCC
Confidence 34899999999999887 999999999 889999999999999995
No 34
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=96.99 E-value=0.00021 Score=49.13 Aligned_cols=42 Identities=14% Similarity=0.144 Sum_probs=36.6
Q ss_pred hhhhhhhccchhhccc-cCC-CCccceeccccccccccchhhhcc
Q psy9488 15 LTLLYDKRPRYHKGIT-KVP-PKDQKLFNKDNREMEEGNLLQEYG 57 (114)
Q Consensus 15 ~~~~~~~LK~iIeGIl-K~p-P~dQrL~~kd~qlLdD~KTL~dcG 57 (114)
...||-+||++|+.-. ..| |+.|||+ -.|.+|.|.+||++|+
T Consensus 22 ~~~TV~~lK~~i~~~~~~~~~~~~QrLI-y~GKiLkD~~tL~~~~ 65 (79)
T cd01790 22 LNWTVGELKTHLSRVYPSKPLEQDQRLI-YSGKLLPDHLKLRDVL 65 (79)
T ss_pred CcChHHHHHHHHHHhcCCCCChhHeEEE-EcCeeccchhhHHHHh
Confidence 4579999999999876 355 6999999 8899999999999996
No 35
>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.
Probab=96.71 E-value=0.00096 Score=43.92 Aligned_cols=47 Identities=9% Similarity=0.075 Sum_probs=38.6
Q ss_pred hhhhhhhhccchhhccccC-CCCccceecc-ccccccccchhhhccccc
Q psy9488 14 YLTLLYDKRPRYHKGITKV-PPKDQKLFNK-DNREMEEGNLLQEYGLTS 60 (114)
Q Consensus 14 ~~~~~~~~LK~iIeGIlK~-pP~dQrL~~k-d~qlLdD~KTL~dcG~ts 60 (114)
....||.+||+.|..--+. +++-|||++. ++.+|.|.+||.++|+.+
T Consensus 20 ~~~aTV~dlk~~i~~~~~~~~~~Rqrl~~~~~g~~L~d~~tL~~~gv~~ 68 (77)
T cd01801 20 SGDATIADLKKLIAKSSPQLTVNRQSLRLEPKGKSLKDDDTLVDLGVGA 68 (77)
T ss_pred CCCccHHHHHHHHHHHcCCCCcceeEEEeCCCCcccCCcccHhhcCCCC
Confidence 4457899999999877655 6899999843 788999999999999943
No 36
>KOG0003|consensus
Probab=96.23 E-value=0.00046 Score=51.68 Aligned_cols=65 Identities=20% Similarity=0.354 Sum_probs=49.6
Q ss_pred ceeehhhhhh-hhhhhhhccchhhccccCCCCccceeccccccccccchhhhccccccccccCCCceeeeEeec
Q psy9488 5 ICQLEIIITY-LTLLYDKRPRYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQ 77 (114)
Q Consensus 5 ~~~~~~i~t~-~~~~~~~LK~iIeGIlK~pP~dQrL~~kd~qlLdD~KTL~dcG~tsqtAkaQ~PA~vGLA~r~ 77 (114)
.|-|||.+-- ...+|+.+|..|+.---.||+.|||. -.+..|+|+.||++||. |--.|+-+.+|-
T Consensus 8 ~~GKT~~le~EpS~ti~~vKA~i~~~~Gi~~~~~~L~-~~~k~LED~~Tla~Y~i-------~~~~Tl~~~~rL 73 (128)
T KOG0003|consen 8 LTGKTITLEVEPSDTIDNVKAKIQDKEGIPPDQQRLI-FAGKQLEDGRTLADYNI-------QKESTLHLVLRL 73 (128)
T ss_pred eeCceEEEEecccchHHHHHHHhccccCCCHHHHHHH-hcccccccCCcccccCc-------cchhhhhhhHHH
Confidence 3556554432 23789999999998888899999999 88999999999999998 444445554443
No 37
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=95.87 E-value=0.0091 Score=40.25 Aligned_cols=52 Identities=6% Similarity=0.089 Sum_probs=44.1
Q ss_pred hhhhhccchhhccccCCCCccceeccccccccccchhhhccccccccccCCCceeeeEee
Q psy9488 17 LLYDKRPRYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFR 76 (114)
Q Consensus 17 ~~~~~LK~iIeGIlK~pP~dQrL~~kd~qlLdD~KTL~dcG~tsqtAkaQ~PA~vGLA~r 76 (114)
.++.+||..++.-...|++.|||+ -++.-|+|.+|+.+||+ +.=.+|-+.++
T Consensus 32 ~~l~~l~~~y~~~~gi~~~~~rf~-f~G~~L~~~~T~~~l~m-------~d~d~I~v~l~ 83 (87)
T cd01763 32 TPLKKLMEAYCQRQGLSMNSVRFL-FDGQRIRDNQTPDDLGM-------EDGDEIEVMLE 83 (87)
T ss_pred CHHHHHHHHHHHHhCCCccceEEE-ECCeECCCCCCHHHcCC-------CCCCEEEEEEe
Confidence 788999999999999999999999 89999999999999999 44445555544
No 38
>KOG0001|consensus
Probab=95.80 E-value=0.012 Score=34.93 Aligned_cols=53 Identities=17% Similarity=0.285 Sum_probs=43.2
Q ss_pred hhhhhccchhhccccCCCCccceeccccccccccchhhhccccccccccCCCceeeeEeec
Q psy9488 17 LLYDKRPRYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQ 77 (114)
Q Consensus 17 ~~~~~LK~iIeGIlK~pP~dQrL~~kd~qlLdD~KTL~dcG~tsqtAkaQ~PA~vGLA~r~ 77 (114)
.++..+|..|+--...|+.+|+|+ ..+..|.|..+|++|++ +...++.|+.+.
T Consensus 20 ~~i~~~k~~i~~~~~~~~~~q~~~-~~~~~l~d~~~l~~~~i-------~~~~~~~l~~~~ 72 (75)
T KOG0001|consen 20 DTIEVVKAKIRDKEGIPVDQQRLI-FGGKPLEDGRTLADYNI-------QEGSTLHLVLSL 72 (75)
T ss_pred CHHHHHHHHHHhhcCCCCeeEEEE-ECCEECcCCCcHHHhCC-------CCCCEEEEEEec
Confidence 566667999998889999999998 66788999999999986 556667776664
No 39
>PLN02560 enoyl-CoA reductase
Probab=95.79 E-value=0.0042 Score=51.40 Aligned_cols=48 Identities=17% Similarity=0.163 Sum_probs=39.1
Q ss_pred hhhhhhhhccchhhccccC-CCCccceecc--c----cccccccchhhhcccccc
Q psy9488 14 YLTLLYDKRPRYHKGITKV-PPKDQKLFNK--D----NREMEEGNLLQEYGLTSA 61 (114)
Q Consensus 14 ~~~~~~~~LK~iIeGIlK~-pP~dQrL~~k--d----~qlLdD~KTL~dcG~tsq 61 (114)
....||.+||+.|+.--+. +|+.|||... + +..|+|++||+|+|+.+.
T Consensus 21 ~~~aTV~dLK~~Isk~~~~~~~~RqRL~~~~~~gk~~g~~L~d~ktL~d~gv~~g 75 (308)
T PLN02560 21 PDSATVADLKKAIHKRKKKYYPSRQRLTLPLPPGKTRPTVLDDSKSLKDYGLGDG 75 (308)
T ss_pred CCCCcHHHHHHHHHHHcCCCChhheEEEEecCCCCcCccccCCCCCHHhcCCCCC
Confidence 4457999999999988876 8999999842 2 338999999999999554
No 40
>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A.
Probab=94.54 E-value=0.031 Score=40.28 Aligned_cols=58 Identities=19% Similarity=0.235 Sum_probs=35.4
Q ss_pred hhhhhccchhh-----cc--ccCCCCccceeccccccccccchhhhccccccccccCCCceeeeEee
Q psy9488 17 LLYDKRPRYHK-----GI--TKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFR 76 (114)
Q Consensus 17 ~~~~~LK~iIe-----GI--lK~pP~dQrL~~kd~qlLdD~KTL~dcG~tsqtAkaQ~PA~vGLA~r 76 (114)
+||-.||+.|- +- -=..+.+.||+ ..|.+|+|++||++|++....... .|.++=+.+|
T Consensus 24 ~TV~~lKe~i~~~WP~d~~~~p~s~~~lRLI-~~GriL~d~~tL~~~~~~~~~~~~-~~~vmHlvvr 88 (111)
T PF13881_consen 24 TTVADLKERIWAEWPEDWEERPKSPSDLRLI-YAGRILEDNKTLSDCRLPSGETPG-GPTVMHLVVR 88 (111)
T ss_dssp SBHHHHHHHHHHSSSTTSSSTT-SGGGEEEE-ETTEEE-SSSBTGGGT--TTSETT---EEEEEEE-
T ss_pred ChHHHHHHHHHHHCccccccCCCChhhEEEE-eCCeecCCcCcHHHhCCCCCCCCC-CCEEEEEEec
Confidence 56666665552 11 12356788999 889999999999999986544432 3566677766
No 41
>KOG0011|consensus
Probab=94.38 E-value=0.017 Score=49.36 Aligned_cols=47 Identities=13% Similarity=0.119 Sum_probs=41.6
Q ss_pred hhhhhhccchhhcccc--CCCCccceeccccccccccchhhhcccccccc
Q psy9488 16 TLLYDKRPRYHKGITK--VPPKDQKLFNKDNREMEEGNLLQEYGLTSAVA 63 (114)
Q Consensus 16 ~~~~~~LK~iIeGIlK--~pP~dQrL~~kd~qlLdD~KTL~dcG~tsqtA 63 (114)
..+|-++|+.|+...- -|.+.|.|+ +++.+|.|.+|++||||.....
T Consensus 20 e~tV~evK~kIet~~g~dyP~~~QkLI-y~GkiL~D~~tv~Eykv~E~~f 68 (340)
T KOG0011|consen 20 EDTVVEVKKKIETEKGPDYPAEQQKLI-YSGKILKDETTVGEYKVKEKKF 68 (340)
T ss_pred chhHHHHHHHHHhccCCCCchhhheee-ecceeccCCcchhhhccccCce
Confidence 3788999999999887 889999999 9999999999999999965443
No 42
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=93.97 E-value=0.017 Score=39.20 Aligned_cols=46 Identities=15% Similarity=0.217 Sum_probs=27.7
Q ss_pred hhhhhhhccchhhccccCCCCccceecc--ccccc--cccchhhhccccc
Q psy9488 15 LTLLYDKRPRYHKGITKVPPKDQKLFNK--DNREM--EEGNLLQEYGLTS 60 (114)
Q Consensus 15 ~~~~~~~LK~iIeGIlK~pP~dQrL~~k--d~qlL--dD~KTL~dcG~ts 60 (114)
-+.++.+||+.|+.-+..|++.|.||+. ....+ ++++||+++|+..
T Consensus 22 ~~~t~~~L~~kI~~~l~~~~~~~~L~~~~~~~~~l~s~~~~tl~~lglkH 71 (80)
T PF11543_consen 22 PSSTLSDLKEKISEQLSIPDSSQSLSKDRNNKEELKSSDSKTLSSLGLKH 71 (80)
T ss_dssp TTSBHHHHHHHHHHHS---TTT---BSSGGGGGCSSS-TT-CCCCT---T
T ss_pred CcccHHHHHHHHHHHcCCCCcceEEEecCCCCcccccCCcCCHHHcCCCC
Confidence 4578999999999999999999999953 23344 6889999999853
No 43
>KOG0010|consensus
Probab=93.57 E-value=0.043 Score=48.97 Aligned_cols=51 Identities=14% Similarity=0.130 Sum_probs=44.9
Q ss_pred ehhhhhhhhhhhhhccchhhccccCCCCccceeccccccccccchhhhcccc
Q psy9488 8 LEIIITYLTLLYDKRPRYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLT 59 (114)
Q Consensus 8 ~~~i~t~~~~~~~~LK~iIeGIlK~pP~dQrL~~kd~qlLdD~KTL~dcG~t 59 (114)
|..+-.+..++|-++|..|.-..+.+++.|+|+ -.|.+|.|..||..||+.
T Consensus 26 k~~~~V~~~ssV~qlKE~I~~~f~a~~dqlvLI-faGrILKD~dTL~~~gI~ 76 (493)
T KOG0010|consen 26 KYEVNVASDSSVLQLKELIAQRFGAPPDQLVLI-YAGRILKDDDTLKQYGIQ 76 (493)
T ss_pred ceeEecccchHHHHHHHHHHHhcCCChhHeeee-ecCccccChhhHHHcCCC
Confidence 334445566999999999999999999999999 899999999999999984
No 44
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=92.66 E-value=0.045 Score=29.93 Aligned_cols=43 Identities=19% Similarity=0.313 Sum_probs=36.1
Q ss_pred hhhhhhhccchhhccccCCCCccceeccccccccccchhhhccc
Q psy9488 15 LTLLYDKRPRYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGL 58 (114)
Q Consensus 15 ~~~~~~~LK~iIeGIlK~pP~dQrL~~kd~qlLdD~KTL~dcG~ 58 (114)
...++.++|+.|......+|++|.|+ ..+..+.+.+.+.+++.
T Consensus 16 ~~~tv~~l~~~i~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~ 58 (69)
T cd00196 16 SGTTVADLKEKLAKKLGLPPEQQRLL-VNGKILPDSLTLEDYGL 58 (69)
T ss_pred CCCcHHHHHHHHHHHHCcChHHeEEE-ECCeECCCCCcHHHcCC
Confidence 35789999999999888999999999 77888888887766665
No 45
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=91.40 E-value=0.065 Score=33.91 Aligned_cols=43 Identities=14% Similarity=0.261 Sum_probs=35.1
Q ss_pred hhhhhccchhhccccCCC-Cccceeccccccccccchhhhccccc
Q psy9488 17 LLYDKRPRYHKGITKVPP-KDQKLFNKDNREMEEGNLLQEYGLTS 60 (114)
Q Consensus 17 ~~~~~LK~iIeGIlK~pP-~dQrL~~kd~qlLdD~KTL~dcG~ts 60 (114)
+++.+|++....-...|+ ++.+|+ -+|+.|++.+|++++|+..
T Consensus 21 ~~~~~l~~~~~~~~~i~~~~~~~l~-fdG~~L~~~~T~~~~~ied 64 (72)
T PF11976_consen 21 TTVSKLIEKYCEKKGIPPEESIRLI-FDGKRLDPNDTPEDLGIED 64 (72)
T ss_dssp SCCHHHHHHHHHHHTTTT-TTEEEE-ETTEEE-TTSCHHHHT-ST
T ss_pred CcHHHHHHHHHHhhCCCccceEEEE-ECCEEcCCCCCHHHCCCCC
Confidence 667777777777888899 888888 8999999999999999854
No 46
>KOG4248|consensus
Probab=83.53 E-value=0.52 Score=45.79 Aligned_cols=50 Identities=16% Similarity=0.300 Sum_probs=44.5
Q ss_pred hhhhhhhhhhhccchhhccccCCCCccceeccccccccccchhhhcccccc
Q psy9488 11 IITYLTLLYDKRPRYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSA 61 (114)
Q Consensus 11 i~t~~~~~~~~LK~iIeGIlK~pP~dQrL~~kd~qlLdD~KTL~dcG~tsq 61 (114)
.+-.+..|+.++|..|..=+..+-+.|||+ .-+.+|.|.|++.|||+..+
T Consensus 17 ~~ig~q~ti~~~~d~~r~~~ni~s~~qr~i-~~grvl~~~k~vq~~~vdgk 66 (1143)
T KOG4248|consen 17 FIIGAQMTIKEFKDHIRASVNIPSEKQRLI-YQGRVLQDDKKVQEYNVDGK 66 (1143)
T ss_pred EEechHHHHHHHHHHHHHhcccccccceee-ecceeeccchhhhhccCCCe
Confidence 344677899999999999999999999999 99999999999999999544
No 47
>KOG0005|consensus
Probab=80.78 E-value=0.61 Score=31.99 Aligned_cols=42 Identities=19% Similarity=0.347 Sum_probs=36.4
Q ss_pred hhhhhhccchhhccccCCCCccceeccccccccccchhhhccc
Q psy9488 16 TLLYDKRPRYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGL 58 (114)
Q Consensus 16 ~~~~~~LK~iIeGIlK~pP~dQrL~~kd~qlLdD~KTL~dcG~ 58 (114)
+..|+.+|.-||.=.-.||..|||. -.+.-|.|.||-.+|.+
T Consensus 20 ~DkverIKErvEEkeGIPp~qqrli-~~gkqm~DD~tA~~Y~~ 61 (70)
T KOG0005|consen 20 TDKVERIKERVEEKEGIPPQQQRLI-YAGKQMNDDKTAAHYNL 61 (70)
T ss_pred chHHHHHHHHhhhhcCCCchhhhhh-hccccccccccHHHhhh
Confidence 3578889999988888999999999 77778989999998876
No 48
>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi. They contain a characteristic GFDRL sequence motif.
Probab=74.99 E-value=1.4 Score=31.02 Aligned_cols=45 Identities=11% Similarity=-0.082 Sum_probs=35.5
Q ss_pred hhhhhhhccchhhccccCCCCccceec-cccccccccchhhhcccc
Q psy9488 15 LTLLYDKRPRYHKGITKVPPKDQKLFN-KDNREMEEGNLLQEYGLT 59 (114)
Q Consensus 15 ~~~~~~~LK~iIeGIlK~pP~dQrL~~-kd~qlLdD~KTL~dcG~t 59 (114)
.+.||..||++|...+-..+.++||-. ..|.+|.|.-.|+..-+.
T Consensus 22 ~~~Tv~~LK~lIR~~~p~~~s~~rLRlI~~Gr~L~d~t~l~~~l~~ 67 (97)
T PF10302_consen 22 NTTTVAWLKQLIRERLPPEPSRRRLRLIYAGRLLNDHTDLSSELKL 67 (97)
T ss_pred CcccHHHHHHHHHhhcCCCCccccEEeeecCcccCccchhhhhhcc
Confidence 448999999999999966666666543 589999999888877653
No 49
>cd01811 OASL_repeat1 2'-5' oligoadenylate synthetase-like protein, repeat 1 of 2. OASL_repeat1 (2'-5' oligoadenylate synthetase-like protein) belongs to a family of interferon-induced 2'-5' oligoadenylate synthetases which are important for the antiviral activity of interferons. While each member of this famliy has a conserved N-terminal OAS catalytic domain, only OASL has two tandem ubiquitin-like repeats located at the C-terminus and this CD represents one of those repeats.
Probab=73.74 E-value=1.5 Score=30.98 Aligned_cols=48 Identities=15% Similarity=0.064 Sum_probs=33.8
Q ss_pred hhhhhhhhhccchhhccccCCCCccceecc----ccccccccchhhhcccccc
Q psy9488 13 TYLTLLYDKRPRYHKGITKVPPKDQKLFNK----DNREMEEGNLLQEYGLTSA 61 (114)
Q Consensus 13 t~~~~~~~~LK~iIeGIlK~pP~dQrL~~k----d~qlLdD~KTL~dcG~tsq 61 (114)
+|--+.+-++|..|+-=-- -+..|||... +-|+|.+.+||++||+=|.
T Consensus 17 vnPy~pI~k~K~kI~~~~~-~~g~qrLsfQepgg~rqlL~s~~sLA~yGiFs~ 68 (80)
T cd01811 17 VNPYSPIRKIKEKIRRSRN-CSGLQRLSFQEPGGERQLLSSRKSLADYGIFSK 68 (80)
T ss_pred eCCcchHHHHHHHHHHhhC-cccceEEEeecCCcccccccccccHhhhcceec
Confidence 4444677778877763322 2348888854 5689999999999998443
No 50
>PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A.
Probab=73.54 E-value=3.2 Score=29.38 Aligned_cols=41 Identities=12% Similarity=0.173 Sum_probs=27.8
Q ss_pred hhhhhccchhhccccCCCCccceeccc----ccccccc-chhhhccc
Q psy9488 17 LLYDKRPRYHKGITKVPPKDQKLFNKD----NREMEEG-NLLQEYGL 58 (114)
Q Consensus 17 ~~~~~LK~iIeGIlK~pP~dQrL~~kd----~qlLdD~-KTL~dcG~ 58 (114)
-||+.+++-+.-++.+ +++-|||++. -.+|.+. .||.|.|+
T Consensus 24 DTI~~v~~~~rklf~i-~~E~RLW~~~~~~~~e~L~~~~~Tv~da~L 69 (88)
T PF14836_consen 24 DTIGFVEKEMRKLFNI-QEETRLWNKYSENSYELLNNPEITVEDAGL 69 (88)
T ss_dssp SBHHHHHHHHHHHCT--TS-EEEEEECTTTCEEEE--TTSBTTTTT-
T ss_pred ChHHHHHHHHHHHhCC-CccceehhccCCcchhhhCCCCccHHHccC
Confidence 5777788888888888 8889999762 2345444 79999998
No 51
>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []. Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.
Probab=73.21 E-value=1.3 Score=29.06 Aligned_cols=18 Identities=17% Similarity=0.412 Sum_probs=14.5
Q ss_pred ccccccccchhhhccccc
Q psy9488 43 DNREMEEGNLLQEYGLTS 60 (114)
Q Consensus 43 d~qlLdD~KTL~dcG~ts 60 (114)
++..|++++||+++|+..
T Consensus 55 ~g~~L~~~~tL~~~gV~d 72 (79)
T PF08817_consen 55 GGRPLDPDQTLADAGVRD 72 (79)
T ss_dssp GTEEEETTSBCGGGT--T
T ss_pred CCcccCCcCcHhHcCCCC
Confidence 678999999999999853
No 52
>PF10790 DUF2604: Protein of Unknown function (DUF2604); InterPro: IPR019726 This entry represents bacterial proteins with undetermined function.
Probab=68.51 E-value=3.1 Score=28.97 Aligned_cols=34 Identities=18% Similarity=0.485 Sum_probs=27.1
Q ss_pred ccccCCCCccceeccccccccccchhhhcccccc
Q psy9488 28 GITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSA 61 (114)
Q Consensus 28 GIlK~pP~dQrL~~kd~qlLdD~KTL~dcG~tsq 61 (114)
|=.-+|+++=.|-.-.+++||-+|...|+|||.-
T Consensus 30 gNvgQP~ENWElkDe~G~vlD~~kKveD~Gftng 63 (76)
T PF10790_consen 30 GNVGQPPENWELKDESGQVLDVNKKVEDFGFTNG 63 (76)
T ss_pred cccCCCcccceeeccCCcEeeccchhhhcccccc
Confidence 3445788887776557999999999999999643
No 53
>PF00550 PP-binding: Phosphopantetheine attachment site; InterPro: IPR006163 Phosphopantetheine (or pantetheine 4' phosphate) is the prosthetic group of acyl carrier proteins (ACP) in some multienzyme complexes where it serves as a 'swinging arm' for the attachment of activated fatty acid and amino-acid groups []. The amino-terminal region of the ACP proteins is well defined and consists of alpha four helices arranged in a right-handed bundle held together by interhelical hydrophobic interactions. The Asp-Ser-Leu (DSL)motif is conserved in all of the ACP sequences, and the 4'-PP prosthetic group is covalently linked via a phosphodiester bond to the serine residue. The DSL sequence is present at the amino terminus of helix II, a domain of the protein referred to as the recognition helix and which is responsible for the interaction of ACPs with the enzymes of type II fatty acid synthesis [].; GO: 0048037 cofactor binding; PDB: 3EJB_E 3EJE_G 1L0I_A 2FHS_C 3EJD_E 2FAE_B 2FAD_B 2FAC_B 2K94_A 1ACP_A ....
Probab=65.36 E-value=2.7 Score=25.55 Aligned_cols=34 Identities=18% Similarity=0.264 Sum_probs=23.9
Q ss_pred hhccchhhccccCCCCccceeccccccccccchhhhcccccccc
Q psy9488 20 DKRPRYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVA 63 (114)
Q Consensus 20 ~~LK~iIeGIlK~pP~dQrL~~kd~qlLdD~KTL~dcG~tsqtA 63 (114)
+++++++..+++.++++ ++....|.++|+.|=.+
T Consensus 1 e~l~~~~~~~l~~~~~~----------i~~~~~~~~lG~DSl~~ 34 (67)
T PF00550_consen 1 EQLREIIAEVLGVDPEE----------IDPDTDFFDLGLDSLDA 34 (67)
T ss_dssp HHHHHHHHHHHTSSGGC----------TSTTSBTTTTTSSHHHH
T ss_pred CHHHHHHHHHHCcCHhh----------CCCCCCHHHhCCchHHH
Confidence 35677888888755554 45667788999977554
No 54
>PF10209 DUF2340: Uncharacterized conserved protein (DUF2340); InterPro: IPR018794 This entry consists of small proteins of approximately 150 amino acids whose function is unknown.
Probab=54.92 E-value=6 Score=29.68 Aligned_cols=47 Identities=19% Similarity=0.269 Sum_probs=30.4
Q ss_pred hhhhhccchhhccccCCCCc----------cceecc--------------ccc--cc---cccchhhhcccccccc
Q psy9488 17 LLYDKRPRYHKGITKVPPKD----------QKLFNK--------------DNR--EM---EEGNLLQEYGLTSAVA 63 (114)
Q Consensus 17 ~~~~~LK~iIeGIlK~pP~d----------QrL~~k--------------d~q--lL---dD~KTL~dcG~tsqtA 63 (114)
.||.+|+..+...++..|.= ..+|-+ ++. +| ++.+||.|||+.+.|-
T Consensus 27 ~Tv~~l~~~v~~~I~t~~~~~Pfrn~~yDtlKIy~~AHg~Kt~nLvInle~De~~iL~~~~~~~tL~~~gv~nETE 102 (122)
T PF10209_consen 27 TTVKDLKEQVKQDIKTRPGLPPFRNVKYDTLKIYTKAHGSKTNNLVINLEDDEDWILDVSDDDKTLKELGVENETE 102 (122)
T ss_pred CcHHHHHHHHHHHHhcCCCCCCceeeecceEEEEecCCCCCcCCceeeccCCcceeeecCCCCCcHHHcCCCccce
Confidence 67777777776666544432 112211 233 77 8999999999977764
No 55
>KOG3391|consensus
Probab=51.78 E-value=13 Score=28.93 Aligned_cols=38 Identities=18% Similarity=0.422 Sum_probs=28.1
Q ss_pred cccccchhhhccccccccccCCCceeeeEeecCCCcccceeeecCCCCCCCcccccc
Q psy9488 46 EMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQENGEFEPLELTPYSSPPDLPYVMKA 102 (114)
Q Consensus 46 lLdD~KTL~dcG~tsqtAkaQ~PA~vGLA~r~~~~~FE~L~I~P~SsPP~LPdvMk~ 102 (114)
..||+|||+.||| + + |+|=++.|+|=+--|+--.-|+|
T Consensus 113 g~ddnktL~~~kf-------~----i--------GD~lDVaI~~p~~~~~~~~r~r~ 150 (151)
T KOG3391|consen 113 GIDDNKTLQQTKF-------E----I--------GDYLDVAITPPNRRPPKSGRMRP 150 (151)
T ss_pred cCCccchhhhCCc-------c----c--------cceEEEEecCcccCCCcccccCC
Confidence 4799999999998 2 2 46778888877776666555654
No 56
>PF11620 GABP-alpha: GA-binding protein alpha chain; InterPro: IPR024668 GA-binding protein alpha is a transcription factor capable of interacting with purine rich repeats (GA repeats). This N-terminal domain found in the transcription factor GABP alpha consists of a five-stranded beta-sheet crossed by a distorted helix and has been termed OST domain. The surface of the GABP alpha OST domain contains two clusters of negatively-charged residues suggesting there are positively-charged partner proteins. The OST domain binds to the CH1 and CH3 domains of the co-activator histone acetyltransferase CBP/p300 [].; PDB: 2JUO_A.
Probab=47.17 E-value=13 Score=26.73 Aligned_cols=70 Identities=17% Similarity=0.218 Sum_probs=39.0
Q ss_pred hhhhhccchhhccccCCCCccceeccccccccccchhhhccccccccccCCCceeeeEeecCCCcccceeeecCCCCCCC
Q psy9488 17 LLYDKRPRYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQENGEFEPLELTPYSSPPDL 96 (114)
Q Consensus 17 ~~~~~LK~iIeGIlK~pP~dQrL~~kd~qlLdD~KTL~dcG~tsqtAkaQ~PA~vGLA~r~~~~~FE~L~I~P~SsPP~L 96 (114)
..+-.||+++|-=+...=.+=..|+.|-+ |+..|+|.|+|+ |.-.+|.+-+ .|.+....|-|
T Consensus 13 epl~~Lk~lLe~Rl~~~L~~~~f~LQD~~-L~~~k~L~dQcV-------qgeGlVQlnv----------Qi~s~~~~~ri 74 (88)
T PF11620_consen 13 EPLSTLKKLLERRLGISLSDYEFWLQDIQ-LEPHKSLVDQCV-------QGEGLVQLNV----------QIKSNQGEPRI 74 (88)
T ss_dssp SBGGGHHHHSHHHH-S--SS-EEEETTEE---TTSBTTTSS-----------SEEEEEE----------EEE--TT--EE
T ss_pred CcHHHHHHHHHHhhCCCcCCCeEEeccce-ecCCccHHHhhc-------cccCEEEEEE----------EEEecCCCcce
Confidence 44567888888888888778788867878 999999999998 5555555443 33333333333
Q ss_pred --cccccccc
Q psy9488 97 --PYVMKASE 104 (114)
Q Consensus 97 --PdvMk~q~ 104 (114)
-||.||.+
T Consensus 75 NIvdVlKP~e 84 (88)
T PF11620_consen 75 NIVDVLKPAE 84 (88)
T ss_dssp EEEEEEETTS
T ss_pred EEEEeeccch
Confidence 26777755
No 57
>KOG4147|consensus
Probab=36.46 E-value=16 Score=27.69 Aligned_cols=18 Identities=17% Similarity=0.333 Sum_probs=14.8
Q ss_pred ccc-ccchhhhcccccccc
Q psy9488 46 EME-EGNLLQEYGLTSAVA 63 (114)
Q Consensus 46 lLd-D~KTL~dcG~tsqtA 63 (114)
+|+ +.|||..||+.+.|-
T Consensus 89 ~L~d~~ktL~~~GIenETE 107 (127)
T KOG4147|consen 89 LLKDEDKTLKAAGIENETE 107 (127)
T ss_pred eecCccchHHHhccCcchh
Confidence 455 889999999988775
No 58
>KOG4583|consensus
Probab=35.10 E-value=14 Score=32.48 Aligned_cols=44 Identities=14% Similarity=0.045 Sum_probs=36.2
Q ss_pred hhhhhhhhhhhccchhhccccC--CCCccceeccccccccccchhhh
Q psy9488 11 IITYLTLLYDKRPRYHKGITKV--PPKDQKLFNKDNREMEEGNLLQE 55 (114)
Q Consensus 11 i~t~~~~~~~~LK~iIeGIlK~--pP~dQrL~~kd~qlLdD~KTL~d 55 (114)
|..+++-+|.+||.-++-+--- -+.||||. ..+.+|.|...|.|
T Consensus 26 i~~dl~wtv~~Lk~hls~VyPskpl~~dqrli-Ysgkllld~qcl~d 71 (391)
T KOG4583|consen 26 ISLDLKWTVGDLKVHLSQVYPSKPLELDQRLI-YSGKLLLDHQCLTD 71 (391)
T ss_pred eehhhhhhHHHHhhhHhhcCCCCCchhhHHHH-hhccccccchhHHH
Confidence 5567788999999999877533 34899999 89999999998887
No 59
>PF06487 SAP18: Sin3 associated polypeptide p18 (SAP18); InterPro: IPR010516 This family consists of several eukaryotic Sin3 associated polypeptide p18 (SAP18) sequences. SAP18 is known to be a component of the Sin3-containing complex, which is responsible for the repression of transcription via the modification of histone polypeptides []. SAP18 is also present in the ASAP complex which is thought to be involved in the regulation of splicing during the execution of programmed cell death [].; PDB: 2HDE_A 4A90_A 4A6Q_A 4A8X_C.
Probab=34.69 E-value=17 Score=26.72 Aligned_cols=13 Identities=8% Similarity=0.268 Sum_probs=10.1
Q ss_pred ccccchhhhcccc
Q psy9488 47 MEEGNLLQEYGLT 59 (114)
Q Consensus 47 LdD~KTL~dcG~t 59 (114)
-||+|||++++|.
T Consensus 99 ~d~~kTL~~~~F~ 111 (120)
T PF06487_consen 99 PDDNKTLADLRFV 111 (120)
T ss_dssp TTTTSBCGGGT--
T ss_pred CCcccCHhhCCcc
Confidence 3999999999993
No 60
>KOG0013|consensus
Probab=22.08 E-value=38 Score=28.04 Aligned_cols=41 Identities=17% Similarity=0.179 Sum_probs=37.2
Q ss_pred hhhhhccchhhccccCCCCccceeccccccccccchhhhccc
Q psy9488 17 LLYDKRPRYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGL 58 (114)
Q Consensus 17 ~~~~~LK~iIeGIlK~pP~dQrL~~kd~qlLdD~KTL~dcG~ 58 (114)
-+|.++|+++..-=.+-|-.||.| -.+-++.|.--|.+|+.
T Consensus 167 Dtv~eik~~L~Aaeg~D~~sQrif-~Sg~~l~dkt~LeEc~i 207 (231)
T KOG0013|consen 167 DTVGEIKRALRAAEGVDPLSQRIF-FSGGVLVDKTDLEECKI 207 (231)
T ss_pred CcHHHHHHHHHHhhccchhhheee-ccCCceeccccceeeee
Confidence 578899999988888889999999 88899999999999987
No 61
>COG4954 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.82 E-value=38 Score=25.74 Aligned_cols=30 Identities=30% Similarity=0.653 Sum_probs=24.4
Q ss_pred cccccCCCceeeeEeec-CCCcccceeeecC
Q psy9488 61 AVAKAQSPALVGLAFRQ-ENGEFEPLELTPY 90 (114)
Q Consensus 61 qtAkaQ~PA~vGLA~r~-~~~~FE~L~I~P~ 90 (114)
+--.+|+|-.+|=.+|+ .+|.+.+|.|.|.
T Consensus 28 sgivaq~peiigepyrd~agn~ynplsiqpv 58 (135)
T COG4954 28 SGIVAQSPEIIGEPYRDAAGNTYNPLSIQPV 58 (135)
T ss_pred hhhhhcCchhcCcccccccCCccCccccceE
Confidence 33467999999999996 5678999988875
No 62
>cd01767 UBX UBX (ubiquitin regulatory X) domain. The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.
Probab=20.89 E-value=74 Score=20.41 Aligned_cols=42 Identities=17% Similarity=0.125 Sum_probs=21.8
Q ss_pred hhhhhccchhhccccCCCCccceecc-ccccc---cccchhhhcccc
Q psy9488 17 LLYDKRPRYHKGITKVPPKDQKLFNK-DNREM---EEGNLLQEYGLT 59 (114)
Q Consensus 17 ~~~~~LK~iIeGIlK~pP~dQrL~~k-d~qlL---dD~KTL~dcG~t 59 (114)
.++..|..-|+..... +.+=+|+-. -...+ ++++||.|+|+.
T Consensus 23 ~tl~~l~~fv~~~~~~-~~~f~L~t~~Pr~~~~~~~~~~TL~e~gL~ 68 (77)
T cd01767 23 HKLSDVRDFVESNGPP-AEPFTLMTSFPRRVLTDLDYELTLQEAGLV 68 (77)
T ss_pred CCHHHHHHHHHHcCCC-CCCEEEEeCCCCccCCCCCccCcHHHcCCc
Confidence 4445555555544332 333344421 11222 479999999994
No 63
>PF09178 DUF1945: Domain of unknown function (DUF1945); InterPro: IPR015261 Members of this entry, which are predominantly found in prokaryotic 4-alpha-glucanotransferase, adopt a structure composed of six antiparallel beta-strands, four of which form a beta-sheet and another two form a type I, beta-hairpin. The role of this family of domains, has not, as yet, been defined []. ; PDB: 1LWH_B 1LWJ_B.
Probab=20.70 E-value=37 Score=22.16 Aligned_cols=14 Identities=36% Similarity=0.667 Sum_probs=9.6
Q ss_pred CCcccceeeecCCC
Q psy9488 79 NGEFEPLELTPYSS 92 (114)
Q Consensus 79 ~~~FE~L~I~P~Ss 92 (114)
.-.||-+++-||++
T Consensus 35 E~vFEGvr~kPy~t 48 (51)
T PF09178_consen 35 EVVFEGVRLKPYKT 48 (51)
T ss_dssp -EEETTEEE-TT-E
T ss_pred EEEEEEEEeeccee
Confidence 34699999999986
Done!