Query psy9488
Match_columns 114
No_of_seqs 76 out of 78
Neff 3.5
Searched_HMMs 29240
Date Fri Aug 16 20:40:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9488.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9488hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ajy_B Transcription elongatio 100.0 2.6E-42 8.8E-47 250.4 3.6 108 4-113 7-116 (118)
2 2fnj_B Transcription elongatio 100.0 7.6E-37 2.6E-41 220.9 2.8 106 6-113 9-116 (118)
3 3phx_B Ubiquitin-like protein 98.6 9.5E-09 3.2E-13 65.1 2.4 54 15-76 23-76 (79)
4 1wy8_A NP95-like ring finger p 98.6 1.4E-08 4.9E-13 65.6 3.1 56 14-77 27-82 (89)
5 2faz_A Ubiquitin-like containi 98.6 2E-08 6.7E-13 63.3 2.3 55 14-76 22-76 (78)
6 3a9j_A Ubiquitin; protein comp 98.6 2.8E-08 9.6E-13 61.3 2.7 55 15-77 19-73 (76)
7 1ndd_A NEDD8, protein (ubiquit 98.6 3E-08 1E-12 61.1 2.6 55 15-77 19-73 (76)
8 3n3k_B Ubiquitin; hydrolase, p 98.5 2.5E-08 8.7E-13 63.2 2.3 55 15-77 22-76 (85)
9 2hj8_A Interferon-induced 17 k 98.5 2.9E-08 1E-12 65.0 2.6 54 16-77 24-77 (88)
10 3k9o_B Ubiquitin, UBB+1; E2-25 98.5 3.1E-08 1.1E-12 64.8 2.6 58 15-80 20-77 (96)
11 2kjr_A CG11242; UBL, ubiquitin 98.5 1.4E-08 4.7E-13 69.3 0.8 43 17-59 38-85 (95)
12 4fbj_B NEDD8; effector-HOST ta 98.5 2.7E-08 9.3E-13 65.3 2.2 58 15-80 19-76 (88)
13 3mtn_B UBA80, ubcep1, ubiquiti 98.5 3.7E-08 1.3E-12 62.3 2.6 55 15-77 22-76 (85)
14 3v6c_B Ubiquitin; structural g 98.5 3.2E-08 1.1E-12 64.8 2.3 54 15-76 36-89 (91)
15 1wh3_A 59 kDa 2'-5'-oligoadeny 98.5 4.6E-08 1.6E-12 62.7 3.0 56 16-79 27-82 (87)
16 3dbh_I NEDD8; cell cycle, acti 98.5 4.2E-08 1.4E-12 62.7 2.6 55 15-77 31-85 (88)
17 2dzi_A Ubiquitin-like protein 98.5 4.6E-08 1.6E-12 61.5 2.6 44 15-59 26-69 (81)
18 4hcn_B Polyubiquitin, ubiquiti 98.5 5E-08 1.7E-12 65.1 2.8 54 16-77 42-95 (98)
19 1ttn_A DC-UBP, dendritic cell- 98.5 7.4E-08 2.5E-12 65.4 3.7 54 16-77 43-96 (106)
20 1sif_A Ubiquitin; hydrophobic 98.5 4.4E-08 1.5E-12 64.3 2.1 55 15-77 28-82 (88)
21 1v6e_A Cytoskeleton-associated 98.5 3.3E-08 1.1E-12 66.0 1.4 43 17-59 29-77 (95)
22 2l7r_A Ubiquitin-like protein 98.5 6E-08 2.1E-12 64.5 2.4 54 16-77 37-90 (93)
23 1wgd_A Homocysteine-responsive 98.5 8.1E-08 2.8E-12 63.2 3.0 55 15-77 28-86 (93)
24 2kk8_A Uncharacterized protein 98.5 5E-08 1.7E-12 64.3 1.9 42 17-59 31-73 (84)
25 3rt3_B Ubiquitin-like protein 98.5 1.4E-07 4.8E-12 66.6 4.3 77 16-92 22-103 (159)
26 2bwf_A Ubiquitin-like protein 98.4 7.9E-08 2.7E-12 59.9 2.6 43 16-59 23-65 (77)
27 1yx5_B Ubiquitin; proteasome, 98.4 9.8E-08 3.4E-12 63.2 3.1 55 15-77 19-73 (98)
28 2kan_A Uncharacterized protein 98.4 1.1E-07 3.7E-12 63.8 3.1 54 16-77 34-88 (94)
29 3u5e_m 60S ribosomal protein L 98.4 3.1E-08 1.1E-12 69.4 0.0 60 16-83 20-79 (128)
30 1wx8_A Riken cDNA 4931431F19; 98.4 9.8E-08 3.4E-12 62.8 2.3 54 16-77 36-89 (96)
31 4eew_A Large proline-rich prot 98.4 5.6E-08 1.9E-12 62.8 1.1 43 15-58 36-78 (88)
32 1we6_A Splicing factor, putati 98.4 1.9E-07 6.5E-12 63.7 3.6 54 16-77 51-104 (111)
33 2wyq_A HHR23A, UV excision rep 98.4 1.5E-07 5.1E-12 59.9 2.8 53 16-76 25-80 (85)
34 1wx7_A Ubiquilin 3; ubiquitin- 98.4 1.3E-07 4.5E-12 63.8 2.7 55 15-77 35-89 (106)
35 3b1l_X E3 ubiquitin-protein li 97.7 4.1E-08 1.4E-12 61.4 0.0 43 16-59 20-62 (76)
36 2kd0_A LRR repeats and ubiquit 98.4 1.4E-07 4.9E-12 61.9 2.6 43 16-59 31-73 (85)
37 2lxa_A Ubiquitin-like protein 98.4 1.1E-07 3.7E-12 64.0 1.8 56 15-77 22-78 (87)
38 1t0y_A Tubulin folding cofacto 98.4 1.8E-07 6.3E-12 65.4 3.0 66 17-89 28-100 (122)
39 4dwf_A HLA-B-associated transc 98.4 7.8E-08 2.7E-12 62.4 1.0 54 15-77 24-77 (90)
40 3m62_B UV excision repair prot 98.4 1.8E-07 6.2E-12 63.7 2.7 55 15-77 20-74 (106)
41 1uel_A HHR23B, UV excision rep 98.3 3E-07 1E-11 61.0 3.6 54 16-77 20-76 (95)
42 1yqb_A Ubiquilin 3; structural 98.3 1.4E-07 4.8E-12 63.8 2.1 54 16-77 41-94 (100)
43 1v5o_A 1700011N24RIK protein; 98.3 2.6E-07 8.9E-12 62.3 3.3 55 15-77 30-85 (102)
44 3m63_B Ubiquitin domain-contai 98.3 1.5E-07 5.1E-12 63.9 2.1 44 15-59 46-89 (101)
45 3u30_A Ubiquitin, linear DI-ub 98.3 3.2E-07 1.1E-11 66.0 3.7 76 15-91 39-117 (172)
46 4b6w_A Tubulin-specific chaper 98.3 1.4E-07 4.9E-12 63.0 1.7 44 15-58 23-72 (86)
47 2kdi_A Ubiquitin, vacuolar pro 98.3 2.3E-07 7.9E-12 64.2 2.7 57 16-80 29-85 (114)
48 3vdz_A Ubiquitin-40S ribosomal 98.3 2.4E-07 8.1E-12 63.6 2.7 54 16-77 55-108 (111)
49 2klc_A Ubiquilin-1; ubiquitin- 98.3 2.2E-07 7.4E-12 62.9 2.4 53 16-76 44-96 (101)
50 3rt3_B Ubiquitin-like protein 98.3 2.5E-07 8.5E-12 65.3 2.8 54 16-77 101-154 (159)
51 3l0w_B Monoubiquitinated proli 98.3 3.8E-07 1.3E-11 67.1 3.9 62 15-84 19-80 (169)
52 3u30_A Ubiquitin, linear DI-ub 98.3 2.2E-07 7.4E-12 66.9 2.0 54 16-77 116-169 (172)
53 1we7_A SF3A1 protein; structur 98.3 4E-07 1.4E-11 62.5 3.0 55 15-77 54-108 (115)
54 2kj6_A Tubulin folding cofacto 98.3 1.8E-07 6E-12 64.2 1.1 42 17-58 37-84 (97)
55 1j8c_A Ubiquitin-like protein 98.3 3.8E-07 1.3E-11 64.4 2.8 54 16-77 51-104 (125)
56 2uyz_B Small ubiquitin-related 98.2 3.5E-07 1.2E-11 57.8 2.1 54 16-77 23-76 (79)
57 1x1m_A Ubiquitin-like protein 98.2 5.3E-07 1.8E-11 61.4 2.6 52 17-76 45-99 (107)
58 2ojr_A Ubiquitin; lanthide-bin 98.2 5.8E-07 2E-11 61.4 2.8 54 16-77 55-108 (111)
59 3b08_A Polyubiquitin-C, ubiqui 98.2 6.2E-07 2.1E-11 61.7 2.8 54 16-77 96-149 (152)
60 1wju_A NEDD8 ultimate buster-1 98.2 1.1E-06 3.9E-11 61.3 3.3 53 16-77 39-91 (100)
61 1wf9_A NPL4 family protein; be 98.1 7E-07 2.4E-11 61.0 1.9 45 15-59 26-84 (107)
62 1wxv_A BAG-family molecular ch 98.1 6.1E-07 2.1E-11 58.7 1.3 43 16-59 31-74 (92)
63 1wyw_B Ubiquitin-like protein 98.1 1.1E-06 3.6E-11 58.8 2.2 54 16-77 41-94 (97)
64 3b08_A Polyubiquitin-C, ubiqui 98.1 1.6E-06 5.5E-11 59.6 3.0 45 15-60 19-63 (152)
65 1v86_A DNA segment, CHR 7, way 98.1 8.5E-07 2.9E-11 59.3 1.3 42 16-59 36-77 (95)
66 1uh6_A Ubiquitin-like 5; beta- 98.1 1.3E-06 4.4E-11 61.0 1.9 42 16-58 48-89 (100)
67 3u5c_f 40S ribosomal protein S 98.0 5.8E-07 2E-11 66.0 0.0 55 15-77 19-73 (152)
68 4a20_A Ubiquitin-like protein 98.0 1.3E-06 4.4E-11 60.0 1.5 43 15-58 40-83 (98)
69 3q3f_A Ribonuclease/ubiquitin 98.0 2.5E-06 8.6E-11 64.8 2.8 55 15-77 124-178 (189)
70 3plu_A Ubiquitin-like modifier 98.0 2.9E-06 9.8E-11 59.0 2.5 45 14-59 39-83 (93)
71 1wjn_A Tubulin-folding protein 98.0 2.7E-06 9.2E-11 56.7 2.1 43 17-59 33-82 (97)
72 2daf_A FLJ35834 protein; hypot 98.0 5.2E-06 1.8E-10 60.2 3.7 74 16-100 36-110 (118)
73 1wia_A Hypothetical ubiquitin- 97.9 4.1E-06 1.4E-10 55.1 2.6 51 16-77 27-78 (95)
74 2kdb_A Homocysteine-responsive 97.9 2.9E-06 9.7E-11 58.2 1.8 45 14-59 43-91 (99)
75 1v5t_A 8430435I17RIK protein; 97.9 2.6E-06 9E-11 56.2 1.3 44 16-59 27-72 (90)
76 1wgg_A Ubiquitin carboxyl-term 97.9 3.4E-06 1.2E-10 56.7 1.1 42 15-58 26-67 (96)
77 2dzj_A Synaptic glycoprotein S 97.8 7.3E-06 2.5E-10 54.7 2.3 46 15-60 32-79 (88)
78 1wgh_A Ubiquitin-like 3, HCG-1 97.8 1.2E-05 4.1E-10 57.0 2.8 54 17-76 37-98 (116)
79 3ai5_A Yeast enhanced green fl 97.8 9.5E-06 3.3E-10 65.9 2.3 53 16-76 253-305 (307)
80 2dzm_A FAS-associated factor 1 97.7 1.3E-05 4.3E-10 55.4 2.5 54 16-77 28-82 (100)
81 4dbg_A Ranbp-type and C3HC4-ty 97.7 6.2E-06 2.1E-10 58.1 0.9 43 15-58 45-87 (105)
82 2gow_A HCG-1 protein, ubiquiti 97.6 2.6E-05 8.8E-10 55.9 2.9 55 17-77 38-100 (125)
83 1v2y_A 3300001G02RIK protein; 97.6 9.3E-06 3.2E-10 56.7 0.1 54 16-77 27-96 (105)
84 1se9_A Ubiquitin family; ubiqu 97.6 5.8E-05 2E-09 54.6 4.1 60 16-77 37-103 (126)
85 1oqy_A HHR23A, UV excision rep 97.4 3.7E-05 1.3E-09 63.5 1.8 43 16-59 27-72 (368)
86 2kzr_A Ubiquitin thioesterase 97.1 0.00015 5.1E-09 47.1 1.5 46 14-59 18-67 (86)
87 2xzm_9 RPS31E; ribosome, trans 97.1 7.8E-05 2.7E-09 57.1 0.0 38 16-54 20-57 (189)
88 3shq_A UBLCP1; phosphatase, hy 96.9 0.00046 1.6E-08 55.5 3.0 45 15-59 23-69 (320)
89 3ivf_A Talin-1; FERM domain, c 91.3 0.15 5E-06 40.3 3.4 85 8-92 15-107 (371)
90 2io1_B Small ubiquitin-related 90.7 0.059 2E-06 36.1 0.6 53 17-77 28-80 (94)
91 1wm3_A Ubiquitin-like protein 89.9 0.095 3.2E-06 32.9 1.0 43 17-60 22-64 (72)
92 2io0_B Small ubiquitin-related 89.5 0.3 1E-05 32.6 3.2 53 17-77 26-78 (91)
93 4a3p_A Ubiquitin carboxyl-term 89.4 0.21 7.1E-06 37.6 2.7 59 17-82 150-214 (217)
94 3a4r_A Nfatc2-interacting prot 88.8 0.12 4.1E-06 33.3 0.8 43 17-60 29-71 (79)
95 2pjh_A Protein NPL4, nuclear p 88.6 0.16 5.3E-06 33.1 1.3 47 14-60 21-71 (80)
96 3jyu_A Ubiquitin carboxyl-term 87.9 0.47 1.6E-05 36.0 3.8 59 17-82 162-226 (231)
97 1wz0_A Ubiquitin-like protein 86.7 0.25 8.7E-06 33.8 1.5 42 17-59 45-86 (104)
98 2d07_B Ubiquitin-like protein 84.2 0.53 1.8E-05 31.1 2.1 42 17-59 38-79 (93)
99 2k8h_A Small ubiquitin protein 83.6 0.62 2.1E-05 32.3 2.3 42 17-59 47-88 (110)
100 2bps_A YUKD protein; ubiquitin 82.2 0.54 1.8E-05 31.5 1.5 45 17-61 27-75 (81)
101 2eke_C Ubiquitin-like protein 76.6 1.3 4.4E-05 30.5 2.1 42 17-59 51-92 (106)
102 4efo_A Serine/threonine-protei 69.9 1.8 6.2E-05 29.7 1.5 49 15-68 32-82 (94)
103 2kvr_A Ubiquitin carboxyl-term 59.4 1.9 6.7E-05 30.5 0.0 26 17-42 66-91 (130)
104 2kc2_A Talin-1, F1; FERM, adhe 55.4 9.6 0.00033 27.3 3.1 25 45-76 98-122 (128)
105 2juo_A GA-binding protein alph 48.2 12 0.0004 26.0 2.5 71 17-104 13-85 (89)
106 3qx1_A FAS-associated factor 1 45.7 9.6 0.00033 24.1 1.7 44 17-61 28-75 (84)
107 3pge_A SUMO-modified prolifera 44.9 18 0.00062 27.5 3.3 42 17-59 49-90 (200)
108 3dh0_A SAM dependent methyltra 41.7 11 0.00038 25.8 1.6 47 51-97 166-213 (219)
109 3vwc_A Serine protease inhibit 37.3 21 0.00072 26.4 2.6 28 72-99 107-134 (149)
110 3kyd_D Small ubiquitin-related 35.9 11 0.00038 26.4 0.9 42 17-59 61-102 (115)
111 1af8_A Actinorhodin polyketide 33.8 17 0.00059 22.1 1.4 40 18-63 6-45 (86)
112 1vku_A Acyl carrier protein; T 33.8 18 0.00062 23.8 1.6 37 17-63 17-53 (100)
113 2ava_A ACP I, acyl carrier pro 33.2 16 0.00055 22.0 1.2 38 17-63 4-41 (82)
114 2l3v_A ACP, acyl carrier prote 31.7 18 0.00063 21.4 1.3 36 18-63 5-41 (79)
115 2ylm_A Ubiquitin carboxyl-term 31.4 9.7 0.00033 32.2 -0.1 26 17-42 46-71 (530)
116 1or5_A Acyl carrier protein; A 30.6 16 0.00054 22.2 0.8 37 18-63 5-43 (83)
117 2dai_A Ubadc1, ubiquitin assoc 30.1 16 0.00055 24.1 0.9 34 32-65 5-48 (83)
118 1f80_D Acyl carrier protein; t 29.8 20 0.00067 21.4 1.2 37 17-63 7-44 (81)
119 4a6q_A Histone deacetylase com 29.8 16 0.00054 26.9 0.8 12 47-58 116-127 (143)
120 2cnr_A FAS, ACP, acyl carrier 29.4 20 0.0007 21.3 1.2 37 17-63 7-44 (82)
121 2lol_A ACP, acyl carrier prote 29.1 19 0.00066 21.5 1.0 37 17-63 6-43 (81)
122 1l0i_A Acyl carrier protein; a 28.0 17 0.00058 21.6 0.6 36 18-63 4-40 (78)
123 2ehs_A ACP, acyl carrier prote 28.0 17 0.00059 21.2 0.6 35 19-63 3-38 (77)
124 1x3o_A Acyl carrier protein; s 27.9 17 0.00058 21.4 0.6 37 17-63 5-42 (80)
125 2kwl_A ACP, acyl carrier prote 27.4 18 0.00062 21.9 0.7 37 17-63 9-46 (84)
126 2kjs_A Putative acyl carrier p 26.6 17 0.00058 23.4 0.5 20 17-36 2-21 (87)
127 4dxe_H ACP, acyl carrier prote 26.3 23 0.00079 23.3 1.1 37 17-63 26-63 (101)
128 2liu_A CURA; holo state, trans 25.6 20 0.00068 22.0 0.6 37 17-63 21-57 (99)
129 4go6_A HCF N-terminal chain 1; 24.6 46 0.0016 20.3 2.1 25 60-88 2-26 (45)
130 3ejb_A Acyl carrier protein; p 23.9 31 0.0011 22.2 1.4 37 17-63 22-59 (97)
131 2kr5_A PKS, aflatoxin biosynth 23.8 20 0.00068 21.7 0.4 37 17-63 11-47 (89)
132 2lte_A Specialized acyl carrie 29.3 17 0.00058 24.0 0.0 36 18-63 27-62 (103)
133 2qnw_A Acyl carrier protein; m 23.1 23 0.00077 21.4 0.5 37 17-63 7-44 (82)
134 1ik9_C DNA ligase IV; DNA END 22.6 14 0.00047 21.2 -0.5 13 17-29 22-34 (37)
135 2l22_A Mupirocin didomain acyl 22.3 29 0.00098 24.8 1.0 35 17-61 26-60 (212)
136 3qa8_A MGC80376 protein; kinas 22.3 1.1E+02 0.0037 26.7 4.8 43 15-57 330-372 (676)
137 2afd_A Protein ASL1650; twiste 22.0 31 0.001 20.5 1.0 37 17-63 14-50 (88)
138 3gzm_A Acyl carrier protein; h 21.0 29 0.001 20.9 0.7 37 17-63 5-42 (81)
139 2dzk_A UBX domain-containing p 20.1 48 0.0016 22.2 1.7 44 17-60 34-81 (109)
No 1
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=100.00 E-value=2.6e-42 Score=250.39 Aligned_cols=108 Identities=38% Similarity=0.622 Sum_probs=94.0
Q ss_pred cceeehhhhhhhh--hhhhhccchhhccccCCCCccceeccccccccccchhhhccccccccccCCCceeeeEeecCCCc
Q psy9488 4 LICQLEIIITYLT--LLYDKRPRYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQENGE 81 (114)
Q Consensus 4 ~~~~~~~i~t~~~--~~~~~LK~iIeGIlK~pP~dQrL~~kd~qlLdD~KTL~dcG~tsqtAkaQ~PA~vGLA~r~~~~~ 81 (114)
+-+||++|+.+++ .||.+||++|+++.++||+.|||+ ..|.+|+|.+||+|||++++|||||+||+|+|+||. +|+
T Consensus 7 Ikr~ktTI~ldve~sdTV~~lK~kI~~~~giPp~qQrLI-~~Gk~LeD~kTL~dy~I~~~ta~~q~~atl~Lvlr~-~~~ 84 (118)
T 4ajy_B 7 IRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLY-KDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFRA-DDT 84 (118)
T ss_dssp EEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEE-ETTEECCTTSBTTTTTCCGGGSBTTBCEEEEEEECC-SSC
T ss_pred EecCCEEEEEEcCCCChHHHHHHHHHHHHCCCHHHeEEE-eCCeECCCcCCHHHcCCCcCcccCCCCCEEEEEEec-CCC
Confidence 4589999999888 899999999999999999999999 999999999999999999999999999999999998 799
Q ss_pred ccceeeecCCCCCCCccccccccccCCccccC
Q psy9488 82 FEPLELTPYSSPPDLPYVMKASEQANGQENIT 113 (114)
Q Consensus 82 FE~L~I~P~SsPP~LPdvMk~q~s~~~~~~~~ 113 (114)
||+|+|+|||+|||||||||||+++++++++|
T Consensus 85 fE~l~i~p~s~pp~lp~~~~~~~~~~~~~~~~ 116 (118)
T 4ajy_B 85 FEALCIEPFSSPPELPDVMKPQDSGSSANEQA 116 (118)
T ss_dssp CCCCCBCCCCCCCCCCGGGCC-----------
T ss_pred ccceEEecCCCCCCccccccccccCCCccccc
Confidence 99999999999999999999999988888876
No 2
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=100.00 E-value=7.6e-37 Score=220.86 Aligned_cols=106 Identities=39% Similarity=0.644 Sum_probs=82.0
Q ss_pred eeehhhhhhhh--hhhhhccchhhccccCCCCccceeccccccccccchhhhccccccccccCCCceeeeEeecCCCccc
Q psy9488 6 CQLEIIITYLT--LLYDKRPRYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQENGEFE 83 (114)
Q Consensus 6 ~~~~~i~t~~~--~~~~~LK~iIeGIlK~pP~dQrL~~kd~qlLdD~KTL~dcG~tsqtAkaQ~PA~vGLA~r~~~~~FE 83 (114)
.++++|..... .||.+||++|+++..+||+.|||+ ..|..|+|.+||+|||+.+++||||++++|+|+|| .+|+||
T Consensus 9 ~~ktti~lev~~sdTV~~lK~kI~~~egIP~~qQrLi-~~Gk~LeD~~TLsdy~I~~~~a~~q~~stL~L~lr-~~g~fe 86 (118)
T 2fnj_B 9 RHKTTIFTDAKESSTVFELKRIVEGILKRPPEEQRLY-KDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFR-ADDTFE 86 (118)
T ss_dssp EBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEE-ETTEECCTTSBHHHHTCCTTTSBTTBCEEEEEEEB-SSSCBC
T ss_pred cCCEEEEEEeCCcChHHHHHHHHHHHhCCCHHHeEEE-ECCeECCCCCCHHHcCcccccccCCCCCEEEEEec-CCCcee
Confidence 45665665555 899999999999999999999999 89999999999999999999999999999999999 699999
Q ss_pred ceeeecCCCCCCCccccccccccCCccccC
Q psy9488 84 PLELTPYSSPPDLPYVMKASEQANGQENIT 113 (114)
Q Consensus 84 ~L~I~P~SsPP~LPdvMk~q~s~~~~~~~~ 113 (114)
+|+|+|||+|||||||||||++++++++++
T Consensus 87 ~l~i~~~s~pp~~p~~~~~~~~~~~~~~~~ 116 (118)
T 2fnj_B 87 ALRIEPFSSPPELPDVMKPQDSGGSANEQA 116 (118)
T ss_dssp CCCBCCCCCCCC------------------
T ss_pred eeEEecCCCCCCcchhhccccCCCCccccc
Confidence 999999999999999999999999998876
No 3
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=98.65 E-value=9.5e-09 Score=65.12 Aligned_cols=54 Identities=24% Similarity=0.233 Sum_probs=47.1
Q ss_pred hhhhhhhccchhhccccCCCCccceeccccccccccchhhhccccccccccCCCceeeeEee
Q psy9488 15 LTLLYDKRPRYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFR 76 (114)
Q Consensus 15 ~~~~~~~LK~iIeGIlK~pP~dQrL~~kd~qlLdD~KTL~dcG~tsqtAkaQ~PA~vGLA~r 76 (114)
...||.+||++|+.....||+.|||+ ..+..|+|.+||++||+ +.-.+|=|.+|
T Consensus 23 ~~~tV~~lK~~i~~~~gip~~~qrL~-~~G~~L~d~~tL~~~~i-------~~~~~l~l~~r 76 (79)
T 3phx_B 23 LTQTVAHLKQQVSGLEGVQDDLFWLT-FEGKPLEDQLPLGEYGL-------KPLSTVFMNLR 76 (79)
T ss_dssp TTSBHHHHHHHHHHHHTCCGGGEEEE-ETTEECCTTSBGGGGTC-------CTTCEEEEEEC
T ss_pred CcChHHHHHHHHHhhcCCCHHHEEEE-ECCEECCCCCcHHHCCC-------CCCCEEEEEEe
Confidence 34899999999999999999999999 88899999999999999 44556667666
No 4
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=98.64 E-value=1.4e-08 Score=65.55 Aligned_cols=56 Identities=20% Similarity=0.288 Sum_probs=49.2
Q ss_pred hhhhhhhhccchhhccccCCCCccceeccccccccccchhhhccccccccccCCCceeeeEeec
Q psy9488 14 YLTLLYDKRPRYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQ 77 (114)
Q Consensus 14 ~~~~~~~~LK~iIeGIlK~pP~dQrL~~kd~qlLdD~KTL~dcG~tsqtAkaQ~PA~vGLA~r~ 77 (114)
+...||.+||++|+....+||+.|||+ ..+..|+|.+||++||+ +.-++|-|.+|.
T Consensus 27 ~~~~tV~~lK~~i~~~~gip~~~qrL~-~~gk~L~d~~tL~~~~i-------~~g~~i~l~~~~ 82 (89)
T 1wy8_A 27 SRKATIEELRERVWALFDVRPECQRLF-YRGKQLENGYTLFDYDV-------GLNDIIQLLVRP 82 (89)
T ss_dssp CTTCBHHHHHHHHHHHSCCCTTTEEEE-ETTEECCSSSBHHHHTC-------CTTCEEEEEECC
T ss_pred CCCCCHHHHHHHHHHHHCcChhhEEEE-ECCeECCCCCCHHHCCC-------CCCCEEEEEEeC
Confidence 345899999999999999999999999 77889999999999999 456678788775
No 5
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=98.58 E-value=2e-08 Score=63.34 Aligned_cols=55 Identities=24% Similarity=0.329 Sum_probs=47.4
Q ss_pred hhhhhhhhccchhhccccCCCCccceeccccccccccchhhhccccccccccCCCceeeeEee
Q psy9488 14 YLTLLYDKRPRYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFR 76 (114)
Q Consensus 14 ~~~~~~~~LK~iIeGIlK~pP~dQrL~~kd~qlLdD~KTL~dcG~tsqtAkaQ~PA~vGLA~r 76 (114)
+...+|.+||++|+.....||+.|||+ ..+..|+|.+||++||+ +.-++|-|.+|
T Consensus 22 ~~~~tv~~lK~~i~~~~gip~~~qrL~-~~g~~L~d~~tL~~~~i-------~~g~~i~l~~r 76 (78)
T 2faz_A 22 SRLTKVEELRRKIQELFHVEPGLQRLF-YRGKQMEDGHTLFDYEV-------RLNDTIQLLVR 76 (78)
T ss_dssp CTTCBHHHHHHHHHHHHCCCGGGEEEE-ETTEECCTTCBTTTTTC-------CTTCEEEEEEC
T ss_pred CCCCCHHHHHHHHHHHHCcChhhEEEE-ECCEECCCCCCHHHcCC-------CCCCEEEEEEe
Confidence 345899999999999999999999999 77889999999999999 34456777666
No 6
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=98.57 E-value=2.8e-08 Score=61.27 Aligned_cols=55 Identities=18% Similarity=0.366 Sum_probs=46.8
Q ss_pred hhhhhhhccchhhccccCCCCccceeccccccccccchhhhccccccccccCCCceeeeEeec
Q psy9488 15 LTLLYDKRPRYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQ 77 (114)
Q Consensus 15 ~~~~~~~LK~iIeGIlK~pP~dQrL~~kd~qlLdD~KTL~dcG~tsqtAkaQ~PA~vGLA~r~ 77 (114)
...+|.+||+.|+.....||++|||+ ..+..|+|.+||++||+. .-++|=+.+|.
T Consensus 19 ~~~tv~~lK~~i~~~~~i~~~~q~L~-~~g~~L~d~~tL~~~~i~-------~g~~i~l~~~~ 73 (76)
T 3a9j_A 19 PSDTIENVKAKIQDKEGIPPDQQRLI-FAGKQLEDGRTLSDYNIQ-------RESTLHLVLRL 73 (76)
T ss_dssp TTCBHHHHHHHHHHHHCCCGGGEEEE-ETTEECCTTCBTGGGTCC-------TTCEEEEEECC
T ss_pred CCCcHHHHHHHHHHHHCcCHHHeEEE-ECCeECCCCCcHHHcCCC-------CCCEEEEEEeC
Confidence 34899999999999999999999999 778899999999999993 34566666664
No 7
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=98.55 E-value=3e-08 Score=61.13 Aligned_cols=55 Identities=15% Similarity=0.276 Sum_probs=46.8
Q ss_pred hhhhhhhccchhhccccCCCCccceeccccccccccchhhhccccccccccCCCceeeeEeec
Q psy9488 15 LTLLYDKRPRYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQ 77 (114)
Q Consensus 15 ~~~~~~~LK~iIeGIlK~pP~dQrL~~kd~qlLdD~KTL~dcG~tsqtAkaQ~PA~vGLA~r~ 77 (114)
...||.+||++|+.....||+.|||+ ..+..|+|.+||++||+ +.-++|=+.+|.
T Consensus 19 ~~~tv~~lK~~i~~~~~i~~~~q~L~-~~g~~L~d~~tL~~~~i-------~~g~~i~l~~~~ 73 (76)
T 1ndd_A 19 PTDKVERIKERVEEKEGIPPQQQRLI-YSGKQMNDEKTAADYKI-------LGGSVLHLVLAL 73 (76)
T ss_dssp TTCBHHHHHHHHHHHHCCCGGGEEEE-ETTEECCTTSBGGGGTC-------CTTCEEEEEECC
T ss_pred CCChHHHHHHHHHHHHCcChHHEEEE-ECCEECCCCCcHHHcCC-------CCCCEEEEEEeC
Confidence 34899999999999999999999999 77889999999999999 344566666664
No 8
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=98.55 E-value=2.5e-08 Score=63.19 Aligned_cols=55 Identities=16% Similarity=0.341 Sum_probs=47.5
Q ss_pred hhhhhhhccchhhccccCCCCccceeccccccccccchhhhccccccccccCCCceeeeEeec
Q psy9488 15 LTLLYDKRPRYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQ 77 (114)
Q Consensus 15 ~~~~~~~LK~iIeGIlK~pP~dQrL~~kd~qlLdD~KTL~dcG~tsqtAkaQ~PA~vGLA~r~ 77 (114)
...||.+||+.|+.....||+.|||+ ..+..|+|.+||++||+ +.-.+|=|.+|.
T Consensus 22 ~~~tV~~lK~~i~~~~~ip~~~qrL~-~~g~~L~d~~tL~~~~i-------~~~~~i~l~~rl 76 (85)
T 3n3k_B 22 PSDTIENVKAKIQDKEGIPPDQQRLI-FAGKQLEDGRTLSDYNI-------HNHSALYLLLKL 76 (85)
T ss_dssp TTCBHHHHHHHHHHHHCCCGGGEEEE-ETBEECCTTCBTTTTTC-------CTTCEEEEEECC
T ss_pred CCCcHHHHHHHHHHHHCCCHHHEEEE-ECCeECCCCCCHHHCCC-------CCCCEEEEEEec
Confidence 34899999999999999999999999 78889999999999999 444566677664
No 9
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=98.55 E-value=2.9e-08 Score=64.97 Aligned_cols=54 Identities=22% Similarity=0.198 Sum_probs=47.0
Q ss_pred hhhhhhccchhhccccCCCCccceeccccccccccchhhhccccccccccCCCceeeeEeec
Q psy9488 16 TLLYDKRPRYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQ 77 (114)
Q Consensus 16 ~~~~~~LK~iIeGIlK~pP~dQrL~~kd~qlLdD~KTL~dcG~tsqtAkaQ~PA~vGLA~r~ 77 (114)
..||.+||.+|+....+||+.|||+ ..+..|+|.+||++||+ +.-++|=|.+|.
T Consensus 24 ~~TV~~LK~~I~~~~gip~~~qrL~-~~Gk~L~D~~tL~~~~I-------~~g~~i~l~~~~ 77 (88)
T 2hj8_A 24 TQTVAHLKQQVSGLEGVQDDLFWLT-FEGKPLEDQLPLGEYGL-------KPLSTVFMNLRL 77 (88)
T ss_dssp SSBHHHHHHHHHHHTCSCTTTEEEE-SSSSCCCTTSBHHHHHC-------STTCEEEEEEC-
T ss_pred CCcHHHHHHHHHHHhCCChhHEEEE-ECCEECCCCCcHHHcCC-------CCCCEEEEEEEc
Confidence 3789999999999999999999999 77889999999999999 445667777775
No 10
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=98.54 E-value=3.1e-08 Score=64.76 Aligned_cols=58 Identities=19% Similarity=0.346 Sum_probs=49.3
Q ss_pred hhhhhhhccchhhccccCCCCccceeccccccccccchhhhccccccccccCCCceeeeEeecCCC
Q psy9488 15 LTLLYDKRPRYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQENG 80 (114)
Q Consensus 15 ~~~~~~~LK~iIeGIlK~pP~dQrL~~kd~qlLdD~KTL~dcG~tsqtAkaQ~PA~vGLA~r~~~~ 80 (114)
...||.+||+.|+.....||+.|||+ ..+..|+|.+||++||+ +.-.+|=|.+|..+|
T Consensus 20 ~~~TV~~LK~~i~~~~gip~~~qrL~-~~G~~L~d~~tL~~~~i-------~~~~~i~l~~r~~gG 77 (96)
T 3k9o_B 20 PSDTIENVKAKIQDKEGIPPDQQRLI-FAGKQLEDGRTLSDYNI-------QKESTLHLVLRLRGY 77 (96)
T ss_dssp TTCBHHHHHHHHHHHHCCCGGGEEEE-ETTEECCTTSBTGGGTC-------CTTCEEEEEECCCC-
T ss_pred CCCCHHHHHHHHHhhhCCChhHEEEE-ECCEECCCCCcHHHcCC-------CCCCEEEEEEEcCCC
Confidence 34899999999999999999999999 78899999999999999 444577788776344
No 11
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=98.54 E-value=1.4e-08 Score=69.28 Aligned_cols=43 Identities=12% Similarity=-0.075 Sum_probs=38.5
Q ss_pred hhhhhccchhhccccCCCCccceeccc-c----ccccccchhhhcccc
Q psy9488 17 LLYDKRPRYHKGITKVPPKDQKLFNKD-N----REMEEGNLLQEYGLT 59 (114)
Q Consensus 17 ~~~~~LK~iIeGIlK~pP~dQrL~~kd-~----qlLdD~KTL~dcG~t 59 (114)
.||.+||.+|+.+..+||+.|||+..+ + ++++|.+||++||+.
T Consensus 38 ~TV~~LK~kI~~~~GiP~~~QrL~~~~~g~~~~~L~~D~~tL~~Y~i~ 85 (95)
T 2kjr_A 38 LTVAQLKTKLEILTGGCAGTMKVQVFKGDTCVSTMDNNDAQLGYYANS 85 (95)
T ss_dssp CBHHHHHHHHHHHHCSCTTTEEEEEEETTEEEEECCCTTSBHHHHCCS
T ss_pred CHHHHHHHHHHHHHCcCHHHeEEEEecCCcccceeCCCCCCHhHCCcC
Confidence 699999999999999999999999653 3 577999999999984
No 12
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=98.53 E-value=2.7e-08 Score=65.26 Aligned_cols=58 Identities=16% Similarity=0.304 Sum_probs=48.5
Q ss_pred hhhhhhhccchhhccccCCCCccceeccccccccccchhhhccccccccccCCCceeeeEeecCCC
Q psy9488 15 LTLLYDKRPRYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQENG 80 (114)
Q Consensus 15 ~~~~~~~LK~iIeGIlK~pP~dQrL~~kd~qlLdD~KTL~dcG~tsqtAkaQ~PA~vGLA~r~~~~ 80 (114)
...||.+||++|+.....||+.|||+ ..+.+|+|.+||++||+ +.-.+|=|.+|.-++
T Consensus 19 ~~~TV~~LK~~I~~~~gip~~~qrLi-~~Gk~L~D~~tL~~~~i-------~~g~~l~l~~rl~Gg 76 (88)
T 4fbj_B 19 PTDKVERIKERVEEKEGIPPQQQRLI-YSGKQMNDEKTAADYKI-------LGGSVLHLVLALRGG 76 (88)
T ss_dssp TTCBHHHHHHHHHHHHCCCGGGCEEE-ETTEECCTTSBTTTTTC-------CTTCEEEEECBCC--
T ss_pred CCCCHHHHHHHHHHHHCcChhHEEEE-ECCeECCCCCcHHHcCC-------CCCCEEEEEEECCCC
Confidence 34799999999999999999999999 78899999999999999 445567777775333
No 13
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=98.53 E-value=3.7e-08 Score=62.26 Aligned_cols=55 Identities=20% Similarity=0.326 Sum_probs=47.6
Q ss_pred hhhhhhhccchhhccccCCCCccceeccccccccccchhhhccccccccccCCCceeeeEeec
Q psy9488 15 LTLLYDKRPRYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQ 77 (114)
Q Consensus 15 ~~~~~~~LK~iIeGIlK~pP~dQrL~~kd~qlLdD~KTL~dcG~tsqtAkaQ~PA~vGLA~r~ 77 (114)
...||.+||+.|+.....||+.|||+ ..+.+|+|.+||++||+ +.-++|=|.+|.
T Consensus 22 ~~~tV~~lK~~i~~~~~i~~~~qrL~-~~g~~L~d~~tL~~~~i-------~~~~~l~l~~r~ 76 (85)
T 3mtn_B 22 PSDTIENVKAKIQDKEGIPPDQQRLI-FAGKQLEDGRTLSDYNI-------QKWSTLFLLLRL 76 (85)
T ss_dssp TTCBHHHHHHHHHHHHCCCGGGCEEE-ETTEECCTTSBTGGGTC-------CTTCEEEEECCC
T ss_pred CCCCHHHHHHHHHHHHCcChHHEEEE-ECCEECCCCCCHHHcCC-------CCCCEEEEEEEC
Confidence 34899999999999999999999999 78899999999999998 445566676664
No 14
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=98.53 E-value=3.2e-08 Score=64.80 Aligned_cols=54 Identities=19% Similarity=0.384 Sum_probs=45.7
Q ss_pred hhhhhhhccchhhccccCCCCccceeccccccccccchhhhccccccccccCCCceeeeEee
Q psy9488 15 LTLLYDKRPRYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFR 76 (114)
Q Consensus 15 ~~~~~~~LK~iIeGIlK~pP~dQrL~~kd~qlLdD~KTL~dcG~tsqtAkaQ~PA~vGLA~r 76 (114)
...||.+||+.|+....+||+.|||+ ..+..|+|.+||++||+. .-.+|=|.+|
T Consensus 36 ~~~TV~~LK~~I~~~~gip~~~qrL~-~~Gk~L~D~~tL~~~gi~-------~g~~i~l~~r 89 (91)
T 3v6c_B 36 PSDTIENVKAKIQDKEGIPPDQQRLI-FAGKQLEDGRTLSDYNIQ-------KESTLHLVLR 89 (91)
T ss_dssp TTCBHHHHHHHHHHHHCCCGGGCEEE-ETTEECCTTCBTGGGTCC-------TTCEEEEECC
T ss_pred CCCCHHHHHHHHHhhhCCChhhEEEE-ECCeECCCcCcHHHCCCC-------CCCEEEEEEe
Confidence 34799999999999999999999999 788999999999999993 3445555554
No 15
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=98.52 E-value=4.6e-08 Score=62.75 Aligned_cols=56 Identities=16% Similarity=0.128 Sum_probs=47.9
Q ss_pred hhhhhhccchhhccccCCCCccceeccccccccccchhhhccccccccccCCCceeeeEeecCC
Q psy9488 16 TLLYDKRPRYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQEN 79 (114)
Q Consensus 16 ~~~~~~LK~iIeGIlK~pP~dQrL~~kd~qlLdD~KTL~dcG~tsqtAkaQ~PA~vGLA~r~~~ 79 (114)
..||.+||++|+.....||+.|||+ ..+..|+|.+||++||+ +.-++|=|.+|.-+
T Consensus 27 ~~tV~~lK~~i~~~~gi~~~~qrL~-~~Gk~L~d~~tL~~~~i-------~~g~~i~l~~~~~G 82 (87)
T 1wh3_A 27 NSFILGLKQQIEDQQGLPKKQQQLE-FQGQVLQDWLGLGIYGI-------QDSDTLILSKKKGS 82 (87)
T ss_dssp SSBHHHHHHHHHHHTCCCTTTEEEE-ETTEECCSSSBHHHHTC-------CTTEEEEEEECSCC
T ss_pred CChHHHHHHHHHHHhCCChHHEEEE-ECCEEccCCCCHHHCCC-------CCCCEEEEEEeccC
Confidence 3789999999999999999999999 77889999999999999 44456777776533
No 16
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=98.51 E-value=4.2e-08 Score=62.69 Aligned_cols=55 Identities=16% Similarity=0.308 Sum_probs=46.9
Q ss_pred hhhhhhhccchhhccccCCCCccceeccccccccccchhhhccccccccccCCCceeeeEeec
Q psy9488 15 LTLLYDKRPRYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQ 77 (114)
Q Consensus 15 ~~~~~~~LK~iIeGIlK~pP~dQrL~~kd~qlLdD~KTL~dcG~tsqtAkaQ~PA~vGLA~r~ 77 (114)
...||.+||.+|+.....||+.|||+ ..+..|+|.+||++||+ +.-.+|=|.+|.
T Consensus 31 ~~~tV~~lK~~i~~~~gip~~~qrL~-~~G~~L~d~~tL~~~~i-------~~~~~i~l~~rl 85 (88)
T 3dbh_I 31 PTDKVERIKERVEEKEGIPPQQQRLI-YSGKQMNDEKTAADYKI-------LGGSVLHLVLRL 85 (88)
T ss_dssp TTCBHHHHHHHHHHHHCCCGGGCCEE-ETTEECCTTSBGGGGTC-------CTTCEEEECCCC
T ss_pred CCCCHHHHHHHHHHHHCcCHHHEEEE-ECCeECCCCCcHHHcCC-------CCCCEEEEEEeC
Confidence 34799999999999999999999999 78899999999999999 444456666654
No 17
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.51 E-value=4.6e-08 Score=61.50 Aligned_cols=44 Identities=18% Similarity=0.329 Sum_probs=40.5
Q ss_pred hhhhhhhccchhhccccCCCCccceeccccccccccchhhhcccc
Q psy9488 15 LTLLYDKRPRYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLT 59 (114)
Q Consensus 15 ~~~~~~~LK~iIeGIlK~pP~dQrL~~kd~qlLdD~KTL~dcG~t 59 (114)
...||.+||++|+.....||+.|||+ ..+..|+|.+||++||+.
T Consensus 26 ~~~tV~~LK~~i~~~~~i~~~~qrL~-~~gk~L~d~~tL~~~~i~ 69 (81)
T 2dzi_A 26 EDELVSTLKQLVSEKLNVPVRQQRLL-FKGKALADGKRLSDYSIG 69 (81)
T ss_dssp SSCBHHHHHHHHHHHTCCCTTTCEEE-ETTEECCTTSBGGGGTCC
T ss_pred CCCcHHHHHHHHHHHHCcCHHHEEEE-ECCeECCCCCcHHHcCCC
Confidence 34899999999999999999999999 778899999999999994
No 18
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=98.50 E-value=5e-08 Score=65.11 Aligned_cols=54 Identities=22% Similarity=0.420 Sum_probs=47.0
Q ss_pred hhhhhhccchhhccccCCCCccceeccccccccccchhhhccccccccccCCCceeeeEeec
Q psy9488 16 TLLYDKRPRYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQ 77 (114)
Q Consensus 16 ~~~~~~LK~iIeGIlK~pP~dQrL~~kd~qlLdD~KTL~dcG~tsqtAkaQ~PA~vGLA~r~ 77 (114)
..+|.+||+.|+....+||+.|||+ ..+..|+|.+||++||+ +.-.+|=|.+|.
T Consensus 42 ~~TV~~LK~~I~~~~gip~~~qrLi-~~Gk~L~D~~tL~~~~i-------~~g~~i~l~~rl 95 (98)
T 4hcn_B 42 SDTIDNVKSKIQDKEGIPPDQQRLI-FAGKQLEDGRTLSDYNI-------QKESTLHLVLRL 95 (98)
T ss_dssp TCBHHHHHHHHHHHHCCCGGGCEEE-ETTEECCTTCBSGGGTC-------CTTEEEEEECBC
T ss_pred CCcHHHHHHHHHHHhCCChhHEEEE-ECCEECCCCCcHHHCCC-------CCCCEEEEEEec
Confidence 4799999999999999999999999 78899999999999999 444566676664
No 19
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=98.50 E-value=7.4e-08 Score=65.39 Aligned_cols=54 Identities=19% Similarity=0.170 Sum_probs=48.4
Q ss_pred hhhhhhccchhhccccCCCCccceeccccccccccchhhhccccccccccCCCceeeeEeec
Q psy9488 16 TLLYDKRPRYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQ 77 (114)
Q Consensus 16 ~~~~~~LK~iIeGIlK~pP~dQrL~~kd~qlLdD~KTL~dcG~tsqtAkaQ~PA~vGLA~r~ 77 (114)
..||.+||++|+.....||+.|||+ ..+..|+|.+||++||+ +.-.+|-|.+|.
T Consensus 43 ~~TV~~LK~~I~~~~gip~~~qrLi-~~Gk~L~D~~tL~~ygI-------~~g~ti~lv~~~ 96 (106)
T 1ttn_A 43 TDTVFHMKRRLHAAEGVEPGSQRWF-FSGRPLTDKMKFEELKI-------PKDYVVQVIVSQ 96 (106)
T ss_dssp TSHHHHHHHHHHHTTCCCSTTCEEE-ETTEECCTTSHHHHCCC-------SSSCEEEEECCC
T ss_pred CCcHHHHHHHHHHHHCcCcccEEEE-ECCEECCCCCcHHHcCC-------CCCCEEEEEEeC
Confidence 3789999999999999999999999 77899999999999999 556678888775
No 20
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=98.48 E-value=4.4e-08 Score=64.26 Aligned_cols=55 Identities=18% Similarity=0.366 Sum_probs=46.0
Q ss_pred hhhhhhhccchhhccccCCCCccceeccccccccccchhhhccccccccccCCCceeeeEeec
Q psy9488 15 LTLLYDKRPRYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQ 77 (114)
Q Consensus 15 ~~~~~~~LK~iIeGIlK~pP~dQrL~~kd~qlLdD~KTL~dcG~tsqtAkaQ~PA~vGLA~r~ 77 (114)
...||.+||.+|+.....||+.|||+ ..+..|+|.+||++||+. .-++|-|.+|.
T Consensus 28 ~~~TV~~LK~~I~~~~gip~~~qrL~-~~Gk~L~D~~tL~~~gi~-------~g~~i~l~~r~ 82 (88)
T 1sif_A 28 PSDTIENLKAKIQDKEGIPPDQQRLI-FAGKQLEDGRTLSDYNIQ-------KESTLHLVLRL 82 (88)
T ss_dssp TTSBHHHHHHHHHHHHCCCGGGCEEE-ETTEECCTTSBSGGGTCC-------TTCEEEEEC--
T ss_pred CCChHHHHHHHHHHHHCcChhhEEEE-ECCEECCCCCcHHHcCCC-------CCCEEEEEEeC
Confidence 34899999999999999999999999 778899999999999993 34566677664
No 21
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.47 E-value=3.3e-08 Score=65.98 Aligned_cols=43 Identities=16% Similarity=0.081 Sum_probs=38.0
Q ss_pred hhhhhccchhhccccCCCCccceeccc--c----ccccccchhhhcccc
Q psy9488 17 LLYDKRPRYHKGITKVPPKDQKLFNKD--N----REMEEGNLLQEYGLT 59 (114)
Q Consensus 17 ~~~~~LK~iIeGIlK~pP~dQrL~~kd--~----qlLdD~KTL~dcG~t 59 (114)
.||.+||.+|+.+...||+.|||+..+ + ++++|.+||++||+.
T Consensus 29 ~TV~~lK~ki~~~~gip~~~qrL~~~~~~g~~~~~l~~D~~tL~~y~i~ 77 (95)
T 1v6e_A 29 LTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVD 77 (95)
T ss_dssp SBHHHHHHHHHHHTCSCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCC
T ss_pred CHHHHHHHHHHHHHCCCHHHeEEEEeCCCCccccccCCCcCCHhHCCCC
Confidence 799999999999999999999999643 3 357999999999983
No 22
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=98.46 E-value=6e-08 Score=64.47 Aligned_cols=54 Identities=15% Similarity=0.194 Sum_probs=46.6
Q ss_pred hhhhhhccchhhccccCCCCccceeccccccccccchhhhccccccccccCCCceeeeEeec
Q psy9488 16 TLLYDKRPRYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQ 77 (114)
Q Consensus 16 ~~~~~~LK~iIeGIlK~pP~dQrL~~kd~qlLdD~KTL~dcG~tsqtAkaQ~PA~vGLA~r~ 77 (114)
..+|.+||++|+....+||+.|||+ ..+..|+|.+||++||+ +.-.+|=|.+|.
T Consensus 37 ~~TV~~LK~~I~~~~gip~~~qrLi-~~Gk~L~D~~tL~~y~I-------~~gstI~lv~rl 90 (93)
T 2l7r_A 37 QETVAQIKAHVASLEGIAPEDQVVL-LAGAPLEDEATLGQCGV-------EALTTLEVAGRM 90 (93)
T ss_dssp SCBHHHHHHHHHHHHTCCGGGCEEE-ETTEECCTTSBHHHHTC-------CSSCEEEEECCC
T ss_pred CCcHHHHHHHHHHHhCcChhHEEEE-ECCEECCCCCcHHHCCC-------CCCCEEEEEEec
Confidence 3789999999999999999999999 77889999999999999 444566666664
No 23
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=98.46 E-value=8.1e-08 Score=63.25 Aligned_cols=55 Identities=11% Similarity=0.119 Sum_probs=47.8
Q ss_pred hhhhhhhccchhhccc--cCCCCccceeccccccccccchhhhc--cccccccccCCCceeeeEeec
Q psy9488 15 LTLLYDKRPRYHKGIT--KVPPKDQKLFNKDNREMEEGNLLQEY--GLTSAVAKAQSPALVGLAFRQ 77 (114)
Q Consensus 15 ~~~~~~~LK~iIeGIl--K~pP~dQrL~~kd~qlLdD~KTL~dc--G~tsqtAkaQ~PA~vGLA~r~ 77 (114)
...||.+||++|+... ..||+.|||+ ..+.+|+|.+||++| |+ +.-++|=|.+|.
T Consensus 28 ~~~TV~~lK~~I~~~~~~~i~~~~QrLi-~~Gk~L~D~~tL~~~~~~i-------~~~~~i~lv~~~ 86 (93)
T 1wgd_A 28 RGWSVGHLKAHLSRVYPERPRPEDQRLI-YSGKLLLDHQCLRDLLPKQ-------EKRHVLHLVCNV 86 (93)
T ss_dssp TTSCHHHHHHHHHHHSTTCCCTTTCEEE-ETTEECCSSSCHHHHSCSS-------SCSEEEEEECCC
T ss_pred CCCcHHHHHHHHHHHhcCCCChHHeEEE-ECCEECcCcCCHHHHhcCC-------CCCCEEEEEeCC
Confidence 4589999999999999 9999999999 779999999999999 87 455677777664
No 24
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=98.46 E-value=5e-08 Score=64.26 Aligned_cols=42 Identities=12% Similarity=0.067 Sum_probs=39.0
Q ss_pred hhhhhccchhhccccCCCCccceecccccc-ccccchhhhcccc
Q psy9488 17 LLYDKRPRYHKGITKVPPKDQKLFNKDNRE-MEEGNLLQEYGLT 59 (114)
Q Consensus 17 ~~~~~LK~iIeGIlK~pP~dQrL~~kd~ql-LdD~KTL~dcG~t 59 (114)
.||.+||++|+.....||+.|||+ ..+.. |+|.+||++||+.
T Consensus 31 ~TV~~LK~~I~~~~gip~~~QrLi-~~Gk~lL~D~~tL~~y~I~ 73 (84)
T 2kk8_A 31 DTLLVVKQKIERSQHIPVSKQTLI-VDGIVILREDLTVEQCQIV 73 (84)
T ss_dssp SBHHHHHHHHHHHHTCCGGGEEEE-ETTEECCCSSSBHHHHTCC
T ss_pred ChHHHHHHHHHHHHCcChHHEEEE-ECCEEecCCcCCHHHcCCC
Confidence 789999999999999999999999 66777 9999999999983
No 25
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=98.45 E-value=1.4e-07 Score=66.61 Aligned_cols=77 Identities=13% Similarity=0.123 Sum_probs=55.1
Q ss_pred hhhhhhccchhhccccCCCCcccee-ccccccccccchhhhccccccc----cccCCCceeeeEeecCCCcccceeeecC
Q psy9488 16 TLLYDKRPRYHKGITKVPPKDQKLF-NKDNREMEEGNLLQEYGLTSAV----AKAQSPALVGLAFRQENGEFEPLELTPY 90 (114)
Q Consensus 16 ~~~~~~LK~iIeGIlK~pP~dQrL~-~kd~qlLdD~KTL~dcG~tsqt----AkaQ~PA~vGLA~r~~~~~FE~L~I~P~ 90 (114)
..||.+||++|+....+||+.|||+ .+.+..|+|.+||++||+.+.. ...+.|+.+-+.++.-++..-.+++.|-
T Consensus 22 ~~tV~~lK~~I~~~~gip~~~QrL~~~~~g~~L~d~~tL~~y~i~~~~~l~l~~~~~~~~m~i~vk~~~g~~~~~~v~~~ 101 (159)
T 3rt3_B 22 SMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQGLGPGSTVLLVVDKSDEPLSILVRNNKGRSSTYEVRLT 101 (159)
T ss_dssp TCCHHHHHHHHHHHHCCCGGGEEEEEETTCCBCCTTSCGGGGTCCTTCEEEEEECCCCCCEEEEEECTTSCEEEEEECTT
T ss_pred CCcHHHHHHHHHHHhCCCHHHEEEEEcCCCCCCCCCCCHHHcCCCCCCEEEEEccCCCCcEEEEEECCCCCEEEEEeCCC
Confidence 4899999999999999999999998 4467889999999999995321 1111344455555543444445666654
Q ss_pred CC
Q psy9488 91 SS 92 (114)
Q Consensus 91 Ss 92 (114)
.+
T Consensus 102 ~t 103 (159)
T 3rt3_B 102 QT 103 (159)
T ss_dssp SB
T ss_pred CC
Confidence 43
No 26
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=98.45 E-value=7.9e-08 Score=59.88 Aligned_cols=43 Identities=9% Similarity=0.176 Sum_probs=40.1
Q ss_pred hhhhhhccchhhccccCCCCccceeccccccccccchhhhcccc
Q psy9488 16 TLLYDKRPRYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLT 59 (114)
Q Consensus 16 ~~~~~~LK~iIeGIlK~pP~dQrL~~kd~qlLdD~KTL~dcG~t 59 (114)
..+|.+||+.|+.....||+.|||+ ..+..|+|.+||++||+.
T Consensus 23 ~~tV~~LK~~i~~~~~i~~~~qrL~-~~gk~L~d~~tL~~~~i~ 65 (77)
T 2bwf_A 23 ESTVLQFKEAINKANGIPVANQRLI-YSGKILKDDQTVESYHIQ 65 (77)
T ss_dssp TCBHHHHHHHHHHHHCCCGGGEEEE-ETTEECCTTSBTGGGTCC
T ss_pred CCcHHHHHHHHHHHhCCCHHHEEEE-ECCeEcCCCCCHHHcCCC
Confidence 4789999999999999999999999 778899999999999994
No 27
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=98.44 E-value=9.8e-08 Score=63.21 Aligned_cols=55 Identities=20% Similarity=0.384 Sum_probs=47.4
Q ss_pred hhhhhhhccchhhccccCCCCccceeccccccccccchhhhccccccccccCCCceeeeEeec
Q psy9488 15 LTLLYDKRPRYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQ 77 (114)
Q Consensus 15 ~~~~~~~LK~iIeGIlK~pP~dQrL~~kd~qlLdD~KTL~dcG~tsqtAkaQ~PA~vGLA~r~ 77 (114)
...||.+||++|+.....||+.|||+ ..+..|+|.+||++||+ +.-++|-|.+|.
T Consensus 19 ~~~TV~~LK~~I~~~~gi~~~~qrL~-~~Gk~L~D~~tL~~~gi-------~~g~~i~l~~~~ 73 (98)
T 1yx5_B 19 PSDTIENVKAKIQDKEGIPPDQQRLI-FAGKQLEDGRTLSDYNI-------QKESTLHLVLRL 73 (98)
T ss_dssp TTCBHHHHHHHHHHHTCCCGGGEEEE-ETTEECCTTSBTGGGTC-------CTTCEEEEEECC
T ss_pred CCCcHHHHHHHHHHHHCcChhhEEEE-ECCEECCCCCCHHHcCC-------CCCCEEEEEEeC
Confidence 34899999999999999999999999 77889999999999999 445566666664
No 28
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=98.43 E-value=1.1e-07 Score=63.80 Aligned_cols=54 Identities=17% Similarity=0.219 Sum_probs=46.9
Q ss_pred hhhhhhccchhhccccCCCCccceecccccccccc-chhhhccccccccccCCCceeeeEeec
Q psy9488 16 TLLYDKRPRYHKGITKVPPKDQKLFNKDNREMEEG-NLLQEYGLTSAVAKAQSPALVGLAFRQ 77 (114)
Q Consensus 16 ~~~~~~LK~iIeGIlK~pP~dQrL~~kd~qlLdD~-KTL~dcG~tsqtAkaQ~PA~vGLA~r~ 77 (114)
..||.+||.+|+....+||+.|||+ ..+..|+|. +||++||+ +.-.+|=|.+|.
T Consensus 34 ~~TV~~LK~~I~~~~gip~~~QrLi-~~Gk~L~D~~~tL~~ygI-------~~gstl~lv~r~ 88 (94)
T 2kan_A 34 TETVSSLKDKIHIVENTPIKRMQLY-YSGIELADDYRNLNEYGI-------TEFSEIVVFLKS 88 (94)
T ss_dssp TCBHHHHHHHHHHHSSSCTTTEEEE-ETTEEECCTTSBHHHHTC-------CTTEEEEEEECC
T ss_pred CCcHHHHHHHHHHHHCcCHHHEEEE-ECCEECCCCcccHHHCCC-------CCCCEEEEEEeC
Confidence 3789999999999999999999999 778899999 99999999 444567777775
No 29
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=98.41 E-value=3.1e-08 Score=69.38 Aligned_cols=60 Identities=23% Similarity=0.429 Sum_probs=1.3
Q ss_pred hhhhhhccchhhccccCCCCccceeccccccccccchhhhccccccccccCCCceeeeEeecCCCccc
Q psy9488 16 TLLYDKRPRYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQENGEFE 83 (114)
Q Consensus 16 ~~~~~~LK~iIeGIlK~pP~dQrL~~kd~qlLdD~KTL~dcG~tsqtAkaQ~PA~vGLA~r~~~~~FE 83 (114)
..||.+||..|+....+||+.|||+ -.+..|+|.+||++||+ +.-++|-|.+|..+|.++
T Consensus 20 ~~TV~~LK~~I~~~~gip~~~QrLi-~~Gk~L~D~~tL~~~~I-------~~gsti~l~~rl~GG~~~ 79 (128)
T 3u5e_m 20 SDTIDNVKSKIQDKEGIPPDQQRLI-FAGKQLEDGRTLSDYNI-------QKESTLHLVLRLRGGIIE 79 (128)
T ss_dssp -----------------------------------------------------------------CCC
T ss_pred CCCHHHHHHHHHHHhCcChHHEEEE-ECCEECCCCCchhhhcc-------CCCCEEEEEEEcCCCCCC
Confidence 4899999999999999999999999 88899999999999999 445567777776555443
No 30
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.41 E-value=9.8e-08 Score=62.84 Aligned_cols=54 Identities=9% Similarity=0.110 Sum_probs=45.7
Q ss_pred hhhhhhccchhhccccCCCCccceeccccccccccchhhhccccccccccCCCceeeeEeec
Q psy9488 16 TLLYDKRPRYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQ 77 (114)
Q Consensus 16 ~~~~~~LK~iIeGIlK~pP~dQrL~~kd~qlLdD~KTL~dcG~tsqtAkaQ~PA~vGLA~r~ 77 (114)
..+|.+||++|+....+||+.|||+ ..+.+|+|.+||++||+. .-.+|=|.+|.
T Consensus 36 ~~TV~~LK~~I~~~~gip~~~qrL~-~~Gk~L~D~~tL~~~gi~-------~g~~i~l~~~~ 89 (96)
T 1wx8_A 36 NSNVRRFKKQISKYLHCNADRLVLI-FTGKILRDQDILSQRGIL-------DGSTVHVVVRS 89 (96)
T ss_dssp TCCHHHHHHHHHHHTCSCTTTBCCE-ETTEECCTTSCHHHHTCC-------TTEEEECCBCC
T ss_pred CCCHHHHHHHHHHHhCCCHHHEEEE-ECCEECCCcCCHHHCCCC-------CCCEEEEEEeC
Confidence 4789999999999999999999999 778899999999999983 34455555553
No 31
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=98.40 E-value=5.6e-08 Score=62.78 Aligned_cols=43 Identities=19% Similarity=0.322 Sum_probs=40.5
Q ss_pred hhhhhhhccchhhccccCCCCccceeccccccccccchhhhccc
Q psy9488 15 LTLLYDKRPRYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGL 58 (114)
Q Consensus 15 ~~~~~~~LK~iIeGIlK~pP~dQrL~~kd~qlLdD~KTL~dcG~ 58 (114)
...||.+||+.|+.....||+.|||+ ..+.+|+|.+||++||+
T Consensus 36 ~~~tV~~lK~~i~~~~gip~~~qrLi-~~Gk~L~D~~tL~~~~i 78 (88)
T 4eew_A 36 AQMNVKEFKEHIAASVSIPSEKQRLI-YQGRVLQDDKKLQEYNV 78 (88)
T ss_dssp TTCBHHHHHHHHHHHHTCCGGGEEEE-ETTEECCTTSBGGGGTC
T ss_pred CCCCHHHHHHHHHHHhCCCHHHEEEE-ECCEECCCCCcHHHcCC
Confidence 34899999999999999999999999 78899999999999998
No 32
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=98.39 E-value=1.9e-07 Score=63.66 Aligned_cols=54 Identities=17% Similarity=0.240 Sum_probs=47.3
Q ss_pred hhhhhhccchhhccccCCCCccceeccccccccccchhhhccccccccccCCCceeeeEeec
Q psy9488 16 TLLYDKRPRYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQ 77 (114)
Q Consensus 16 ~~~~~~LK~iIeGIlK~pP~dQrL~~kd~qlLdD~KTL~dcG~tsqtAkaQ~PA~vGLA~r~ 77 (114)
..||.+||.+|+.....||+.|||+ ..+.+|+|.+||++||+ +.-.+|=|.+|.
T Consensus 51 ~~TV~~LK~~I~~~~gip~~~QrL~-~~Gk~L~D~~tL~~y~I-------~~g~~l~l~~r~ 104 (111)
T 1we6_A 51 SENVGSLKEKIAGEIQIPANKQKLS-GKAGFLKDNMSLAHYNV-------GAGEILTLSLRE 104 (111)
T ss_dssp SSBHHHHHHHHHHHTTCCTTTSEEE-CSSSBCCTTSBTTTTTC-------SSSCEEEEECSS
T ss_pred CCcHHHHHHHHHHHHCCCHHHeEEE-ECCEECCCCCcHHHCCC-------CCCCEEEEEEEc
Confidence 5799999999999999999999999 77889999999999999 444567777665
No 33
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=98.39 E-value=1.5e-07 Score=59.93 Aligned_cols=53 Identities=11% Similarity=0.135 Sum_probs=44.5
Q ss_pred hhhhhhccchhhcc---ccCCCCccceeccccccccccchhhhccccccccccCCCceeeeEee
Q psy9488 16 TLLYDKRPRYHKGI---TKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFR 76 (114)
Q Consensus 16 ~~~~~~LK~iIeGI---lK~pP~dQrL~~kd~qlLdD~KTL~dcG~tsqtAkaQ~PA~vGLA~r 76 (114)
..||.+||++|+.. ...||+.|||+ ..+..|+|.+||++||+ +.-++|=|..+
T Consensus 25 ~~TV~~lK~~i~~~~~~~gip~~~qrLi-~~Gk~L~D~~tL~~~~i-------~~g~~i~l~~~ 80 (85)
T 2wyq_A 25 DETVKVLKEKIEAEKGRDAFPVAGQKLI-YAGKILSDDVPIRDYRI-------DEKNFVVVMVT 80 (85)
T ss_dssp TSBHHHHHHHHHHHHCTTTCCGGGEEEE-ETTEECCTTSBGGGGCC-------CTTSEEEEEEC
T ss_pred CCCHHHHHHHHHhhccccCCCHHHeEEE-ECCEECcCCCCHHHcCC-------CCCCEEEEEEc
Confidence 47899999999997 77999999999 77889999999999998 34445555554
No 34
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=98.39 E-value=1.3e-07 Score=63.84 Aligned_cols=55 Identities=15% Similarity=0.136 Sum_probs=47.5
Q ss_pred hhhhhhhccchhhccccCCCCccceeccccccccccchhhhccccccccccCCCceeeeEeec
Q psy9488 15 LTLLYDKRPRYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQ 77 (114)
Q Consensus 15 ~~~~~~~LK~iIeGIlK~pP~dQrL~~kd~qlLdD~KTL~dcG~tsqtAkaQ~PA~vGLA~r~ 77 (114)
...+|.+||++|+....+|++.|||+ ..+.+|+|.+||++||+ +.-.+|=|.+|.
T Consensus 35 ~~~TV~~LK~~I~~~~gip~~~qrLi-~~Gk~L~D~~tL~~~gi-------~~g~~i~l~~~~ 89 (106)
T 1wx7_A 35 DTCTIQQLKEEISQRFKAHPDQLVLI-FAGKILKDPDSLAQCGV-------RDGLTVHLVIKR 89 (106)
T ss_dssp TTCCHHHHHHHHHHHHTCCTTTEEEE-ETTEECCTTSCHHHHTC-------CTTEEEEEEECC
T ss_pred CCCcHHHHHHHHHHHHCcChhhEEEE-ECCEECCCcCcHHHcCC-------CCCCEEEEEEcC
Confidence 34899999999999999999999999 77889999999999999 344567777765
No 35
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=97.74 E-value=4.1e-08 Score=61.41 Aligned_cols=43 Identities=12% Similarity=0.076 Sum_probs=40.3
Q ss_pred hhhhhhccchhhccccCCCCccceeccccccccccchhhhcccc
Q psy9488 16 TLLYDKRPRYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLT 59 (114)
Q Consensus 16 ~~~~~~LK~iIeGIlK~pP~dQrL~~kd~qlLdD~KTL~dcG~t 59 (114)
..+|.+||..|+.....||+.|||+ ..+..|+|.+||++||+.
T Consensus 20 ~~tV~~lK~~i~~~~gi~~~~qrL~-~~gk~L~d~~tL~~~~i~ 62 (76)
T 3b1l_X 20 DTSILQLKEVVAKQQGVPADQLRVI-FAGKELPNHLTVQNCDLE 62 (76)
Confidence 4899999999999999999999999 778899999999999984
No 36
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=98.38 E-value=1.4e-07 Score=61.89 Aligned_cols=43 Identities=21% Similarity=0.216 Sum_probs=40.0
Q ss_pred hhhhhhccchhhccccCCCCccceeccccccccccchhhhcccc
Q psy9488 16 TLLYDKRPRYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLT 59 (114)
Q Consensus 16 ~~~~~~LK~iIeGIlK~pP~dQrL~~kd~qlLdD~KTL~dcG~t 59 (114)
..||.+||+.|+....+||+.|||+ ..+..|+|.+||++||+.
T Consensus 31 ~~TV~~LK~~I~~~~gip~~~qrL~-~~Gk~L~D~~tL~~~gi~ 73 (85)
T 2kd0_A 31 DCTVKDLKSQLQPITNVLPRGQKLI-FKGKVLVETSTLKQSDVG 73 (85)
T ss_dssp TSBHHHHHHHHHHHHCCCTTTCEEE-ETTEECCTTCBTTTTTCC
T ss_pred CCcHHHHHHHHHHHHCcChHHEEEE-ECCeECCCcCCHHHCCCC
Confidence 3789999999999999999999999 778899999999999983
No 37
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=98.36 E-value=1.1e-07 Score=63.99 Aligned_cols=56 Identities=9% Similarity=0.055 Sum_probs=47.3
Q ss_pred hhhhhhhccchh-hccccCCCCccceeccccccccccchhhhccccccccccCCCceeeeEeec
Q psy9488 15 LTLLYDKRPRYH-KGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQ 77 (114)
Q Consensus 15 ~~~~~~~LK~iI-eGIlK~pP~dQrL~~kd~qlLdD~KTL~dcG~tsqtAkaQ~PA~vGLA~r~ 77 (114)
...||.++|++| +.....||++|||+ ..|.+|+|.+||++||++... ++|-++++.
T Consensus 22 ~~~TV~~lK~~I~~~~~gip~~~QrLi-~~Gk~L~D~~tL~~y~I~~~~------stl~v~~~~ 78 (87)
T 2lxa_A 22 PSDTILQIKQHLISEEKASHISEIKLL-LKGKVLHDNLFLSDLKVTPAN------STITVMIKP 78 (87)
T ss_dssp TTCBHHHHHHHHHHTTSCSSSTTEEEE-ETTEECCTTCBHHHHCCCGGG------CEEEEEECC
T ss_pred CCCcHHHHHHHHHHHhcCCChHHEEEE-ECCEECcCcCCHHHcCCCCCC------CEEEEEcCC
Confidence 458999999999 99999999999999 889999999999999984332 356676664
No 38
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=98.36 E-value=1.8e-07 Score=65.38 Aligned_cols=66 Identities=6% Similarity=0.070 Sum_probs=44.7
Q ss_pred hhhhhccchhhccccCCCCccceeccc--c----ccccccchhhhccccccccccCCCceeeeEeecCC-Ccccceeeec
Q psy9488 17 LLYDKRPRYHKGITKVPPKDQKLFNKD--N----REMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQEN-GEFEPLELTP 89 (114)
Q Consensus 17 ~~~~~LK~iIeGIlK~pP~dQrL~~kd--~----qlLdD~KTL~dcG~tsqtAkaQ~PA~vGLA~r~~~-~~FE~L~I~P 89 (114)
.||.+||.+|+.+..+||+.|||+..+ + ++++|.+||++||+ +.-.+|=|.-.... +.||++..+.
T Consensus 28 ~TV~~lK~ki~~~~Gip~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i-------~~g~~ihvvd~~p~~~~~~d~s~v~ 100 (122)
T 1t0y_A 28 MSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGV-------RDGYRIHAVDVTGGNEDFKDESMVE 100 (122)
T ss_dssp SBHHHHHHHHHHHHCCCTTTEEEEEECSSSSEEEECCCCSSBTTTTTC-------CSSEEEEEEECTTCCCC--------
T ss_pred CcHHHHHHHHHHHhCCCHHHeEEEEecCCCccccccCCCcCCHHHCCC-------CCCCEEEEEeCCCCCCCccccccce
Confidence 799999999999999999999999543 2 45799999999999 44455555433211 5677765543
No 39
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=98.36 E-value=7.8e-08 Score=62.35 Aligned_cols=54 Identities=19% Similarity=0.297 Sum_probs=46.8
Q ss_pred hhhhhhhccchhhccccCCCCccceeccccccccccchhhhccccccccccCCCceeeeEeec
Q psy9488 15 LTLLYDKRPRYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQ 77 (114)
Q Consensus 15 ~~~~~~~LK~iIeGIlK~pP~dQrL~~kd~qlLdD~KTL~dcG~tsqtAkaQ~PA~vGLA~r~ 77 (114)
...+|.+||++|+.....||+.|||+ ..+.+|+|.+||++||+ . -.+|=|.+|.
T Consensus 24 ~~~tV~~lK~~i~~~~gip~~~qrLi-~~Gk~L~d~~tL~~~~i-~-------g~~i~l~~~~ 77 (90)
T 4dwf_A 24 AQMNVKEFKEHIAASVSIPSEKQRLI-YQGRVLQDDKKLQEYNV-G-------GKVIHLVERA 77 (90)
T ss_dssp TTCBHHHHHHHHHHHHTCCGGGEEEE-ETTEECCTTSBGGGGTC-T-------TEEEEEEECC
T ss_pred CCCCHHHHHHHHHHHhCCCHHHEEEE-ECCeECCCCCCHHHcCC-C-------CcEEEEEecC
Confidence 34899999999999999999999999 78999999999999998 2 2467777774
No 40
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=98.35 E-value=1.8e-07 Score=63.73 Aligned_cols=55 Identities=13% Similarity=0.087 Sum_probs=48.3
Q ss_pred hhhhhhhccchhhccccCCCCccceeccccccccccchhhhccccccccccCCCceeeeEeec
Q psy9488 15 LTLLYDKRPRYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQ 77 (114)
Q Consensus 15 ~~~~~~~LK~iIeGIlK~pP~dQrL~~kd~qlLdD~KTL~dcG~tsqtAkaQ~PA~vGLA~r~ 77 (114)
...+|.+||++|+.....||+.|||+ ..|.+|+|.+||++||+ +.-.+|=|.++.
T Consensus 20 ~~~TV~~LK~~I~~~~gip~~~QrLi-~~Gk~L~D~~tL~~~~i-------~~g~~i~lv~~~ 74 (106)
T 3m62_B 20 PSNTILETKTKLAQSISCEESQIKLI-YSGKVLQDSKTVSECGL-------KDGDQVVFMVSQ 74 (106)
T ss_dssp TTSBHHHHHHHHHHTTTSCGGGCEEE-ETTEECCTTSBTTTTTC-------CTTCEEEEECCC
T ss_pred CCCcHHHHHHHHHHHHCCChhhEEEE-ECCEECCCcCCHHHcCC-------CCCCEEEEEEcC
Confidence 34799999999999999999999999 78899999999999999 455677777774
No 41
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=98.35 E-value=3e-07 Score=61.00 Aligned_cols=54 Identities=15% Similarity=0.189 Sum_probs=45.3
Q ss_pred hhhhhhccchhhcc---ccCCCCccceeccccccccccchhhhccccccccccCCCceeeeEeec
Q psy9488 16 TLLYDKRPRYHKGI---TKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQ 77 (114)
Q Consensus 16 ~~~~~~LK~iIeGI---lK~pP~dQrL~~kd~qlLdD~KTL~dcG~tsqtAkaQ~PA~vGLA~r~ 77 (114)
..||.+||++|+.. ...||+.|||+ ..+..|+|.+||++||+ +.-++|=|..+.
T Consensus 20 ~~TV~~LK~~I~~~~~~~gip~~~qrLi-~~Gk~L~D~~tL~~ygI-------~~g~~i~l~~~~ 76 (95)
T 1uel_A 20 EETVKALKEKIESEKGKDAFPVAGQKLI-YAGKILNDDTALKEYKI-------DEKNFVVVMVTK 76 (95)
T ss_dssp TSBHHHHHHHHHHHHCTTTCCTTTEEEE-ETTEECCTTSBGGGGTC-------CSSSEEEEEESS
T ss_pred CCHHHHHHHHHHhhcccCCCChhhEEEE-ECCEECCCcCcHHHCCC-------CCCCEEEEEEeC
Confidence 47899999999998 67999999999 77899999999999999 344466666553
No 42
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=98.35 E-value=1.4e-07 Score=63.84 Aligned_cols=54 Identities=15% Similarity=0.153 Sum_probs=46.1
Q ss_pred hhhhhhccchhhccccCCCCccceeccccccccccchhhhccccccccccCCCceeeeEeec
Q psy9488 16 TLLYDKRPRYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQ 77 (114)
Q Consensus 16 ~~~~~~LK~iIeGIlK~pP~dQrL~~kd~qlLdD~KTL~dcG~tsqtAkaQ~PA~vGLA~r~ 77 (114)
..||.+||++|+....+||+.|||+ ..+.+|+|.+||++||+. .-.+|=|.+|.
T Consensus 41 ~~TV~~LK~~I~~~~gip~~~QrLi-~~Gk~L~D~~tL~~ygI~-------~gstI~l~~r~ 94 (100)
T 1yqb_A 41 TCTIQQLKEEISQRFKAHPDQLVLI-FAGKILKDPDSLAQCGVR-------DGLTVHLVIKR 94 (100)
T ss_dssp TCBHHHHHHHHHHHHTCCGGGEEEE-ETTEECCTTSBHHHHTCC-------TTCEEEEEECC
T ss_pred CCcHHHHHHHHHHHHCcChhhEEEE-ECCEECCCcCcHHHCCCC-------CCCEEEEEEcC
Confidence 4889999999999999999999999 778899999999999983 34456666653
No 43
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.34 E-value=2.6e-07 Score=62.29 Aligned_cols=55 Identities=15% Similarity=0.179 Sum_probs=44.6
Q ss_pred hhhhhhhccchhhccccCCCCccceecccccccccc-chhhhccccccccccCCCceeeeEeec
Q psy9488 15 LTLLYDKRPRYHKGITKVPPKDQKLFNKDNREMEEG-NLLQEYGLTSAVAKAQSPALVGLAFRQ 77 (114)
Q Consensus 15 ~~~~~~~LK~iIeGIlK~pP~dQrL~~kd~qlLdD~-KTL~dcG~tsqtAkaQ~PA~vGLA~r~ 77 (114)
...||.+||++|+....+||+.|||+ ..+..|+|. +||++||+ +.-.+|=|..+.
T Consensus 30 ~~~TV~~LK~~I~~~~gip~~~qrL~-~~gk~L~D~~~tL~~ygI-------~~g~~l~l~~~~ 85 (102)
T 1v5o_A 30 PDFELSNFRVLCELESGVPAEEAQIV-YMEQLLTDDHCSLGSYGL-------KDGDMVVLLQKD 85 (102)
T ss_dssp TTCBHHHHHHHHHHHTCCCGGGBCEE-ETTEEECCSSSBHHHHTC-------CTTEEEEECBCC
T ss_pred CCCCHHHHHHHHHHHHCcChHHeEEE-ECCEECCCCcccHHHCCC-------CCCCEEEEEECC
Confidence 34899999999999999999999999 666778766 89999999 334456566554
No 44
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=98.34 E-value=1.5e-07 Score=63.94 Aligned_cols=44 Identities=9% Similarity=0.154 Sum_probs=40.7
Q ss_pred hhhhhhhccchhhccccCCCCccceeccccccccccchhhhcccc
Q psy9488 15 LTLLYDKRPRYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLT 59 (114)
Q Consensus 15 ~~~~~~~LK~iIeGIlK~pP~dQrL~~kd~qlLdD~KTL~dcG~t 59 (114)
...||.+||+.|+.....||+.|||+ ..+.+|+|.+||++||+.
T Consensus 46 ~~~TV~~LK~~I~~~~gip~~~QrLi-~~Gk~L~D~~tL~~~gI~ 89 (101)
T 3m63_B 46 PESTVLQFKEAINKANGIPVANQRLI-YSGKILKDDQTVESYHIQ 89 (101)
T ss_dssp TTSBHHHHHHHHHHHHSCCSTTCCEE-ETTEECCTTSBTTTTTCC
T ss_pred CCCCHHHHHHHHHHHHCcChHHEEEE-ECCEECCCcCcHHHCCCC
Confidence 34799999999999999999999999 788999999999999994
No 45
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=98.33 E-value=3.2e-07 Score=65.99 Aligned_cols=76 Identities=16% Similarity=0.277 Sum_probs=53.3
Q ss_pred hhhhhhhccchhhccccCCCCccceeccccccccccchhhhcccccccc---ccCCCceeeeEeecCCCcccceeeecCC
Q psy9488 15 LTLLYDKRPRYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVA---KAQSPALVGLAFRQENGEFEPLELTPYS 91 (114)
Q Consensus 15 ~~~~~~~LK~iIeGIlK~pP~dQrL~~kd~qlLdD~KTL~dcG~tsqtA---kaQ~PA~vGLA~r~~~~~FE~L~I~P~S 91 (114)
...||.+||++|+....+||+.|||+ ..+..|+|.+||++||+.+... ....+..+.+.++..++..-.+++.|-+
T Consensus 39 ~~~tV~~lK~~I~~~~gip~~~QrL~-~~g~~L~d~~tL~~~~i~~~~~l~l~~~~~gg~~i~Vk~~~g~~~~l~v~~~~ 117 (172)
T 3u30_A 39 PSDTIENVKAKIQDKEGIPPDQQRLI-FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSD 117 (172)
T ss_dssp TTCBHHHHHHHHHHHHCCCGGGEEEE-ETTEECCTTCBTGGGTCCTTCEEEEEECCCCCEEEEEEESSCCEEEEEECTTC
T ss_pred CCCcHHHHHHHHHHHHCcChHHEEEE-ECCccccccCCHhHcCCcccceeeeeecccccccceeecccCcceeEEecCCC
Confidence 34899999999999999999999999 7789999999999999954221 0111222333444434444456665544
No 46
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=98.33 E-value=1.4e-07 Score=63.04 Aligned_cols=44 Identities=18% Similarity=0.141 Sum_probs=39.5
Q ss_pred hhhhhhhccchhhccccCCCCccceeccc------cccccccchhhhccc
Q psy9488 15 LTLLYDKRPRYHKGITKVPPKDQKLFNKD------NREMEEGNLLQEYGL 58 (114)
Q Consensus 15 ~~~~~~~LK~iIeGIlK~pP~dQrL~~kd------~qlLdD~KTL~dcG~ 58 (114)
...||.+||.+|+.+...||+.|||+.++ +.+|+|.+||++||+
T Consensus 23 ~s~TI~~lK~ki~~~~Gip~~~QrLi~~~~~~~~~g~~l~d~~tL~~Y~i 72 (86)
T 4b6w_A 23 LAQTIESIKENVFTHFATPPEYMQLQLIDDRGITIEKNMANDKQLGYYQC 72 (86)
T ss_dssp TTSBHHHHHHHHHTTSCCCGGGEEEEEECTTSCEEESSCCTTSBGGGGTC
T ss_pred ccCcHHHHHHHHHHHHCCCHHHEEEEEecCCCCceeeEcCCCCCHHHCCC
Confidence 34799999999999999999999998642 578999999999998
No 47
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=98.32 E-value=2.3e-07 Score=64.21 Aligned_cols=57 Identities=23% Similarity=0.438 Sum_probs=48.8
Q ss_pred hhhhhhccchhhccccCCCCccceeccccccccccchhhhccccccccccCCCceeeeEeecCCC
Q psy9488 16 TLLYDKRPRYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQENG 80 (114)
Q Consensus 16 ~~~~~~LK~iIeGIlK~pP~dQrL~~kd~qlLdD~KTL~dcG~tsqtAkaQ~PA~vGLA~r~~~~ 80 (114)
..||.+||.+|+.....||+.|||+ ..+..|+|.+||++||+ +.-++|=|.+|..++
T Consensus 29 ~~TV~~LK~~I~~~~gip~~~qrLi-~~Gk~L~D~~tL~~ygI-------~~gstI~l~~~~~GG 85 (114)
T 2kdi_A 29 SDTIDNVKSKIQDKEGIPPDQQRLI-WAGKQLEDGRTLSDYNI-------QRESTLHLVLRLRGG 85 (114)
T ss_dssp TCBHHHHHHHHHHHHCCCGGGEEEE-ETTEECCTTCBTTTTTC-------CSSCEEEEEECCCSS
T ss_pred CCcHHHHHHHHHHHHCcChHHEEEE-ECCEECCCCCcHHHCCC-------CCCCEEEEEEEcCCC
Confidence 4789999999999999999999999 77889999999999999 444567787776344
No 48
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=98.32 E-value=2.4e-07 Score=63.61 Aligned_cols=54 Identities=20% Similarity=0.405 Sum_probs=47.2
Q ss_pred hhhhhhccchhhccccCCCCccceeccccccccccchhhhccccccccccCCCceeeeEeec
Q psy9488 16 TLLYDKRPRYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQ 77 (114)
Q Consensus 16 ~~~~~~LK~iIeGIlK~pP~dQrL~~kd~qlLdD~KTL~dcG~tsqtAkaQ~PA~vGLA~r~ 77 (114)
..||.+||++|+....+||+.|||+ ..+.+|+|.+||++||+ +.-.+|=|.+|.
T Consensus 55 ~~TV~~LK~~I~~~~gip~~~QrLi-~~Gk~L~D~~tL~~~gI-------~~gs~I~l~~rl 108 (111)
T 3vdz_A 55 SDTIENVKAKIQDKEGIPPDQQRLI-FAGKQLEDGRTLSDYNI-------QKESTLHLVLRL 108 (111)
T ss_dssp TCBHHHHHHHHHHHHCCCGGGEEEE-ETTEECCTTSBTTTTTC-------CTTCEEEEEECC
T ss_pred CCCHHHHHHHHHHHhCCChHHEEEE-ECCEECCCCCcHHHCCC-------CCCCEEEEEEec
Confidence 4799999999999999999999999 78899999999999998 444567677664
No 49
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=98.31 E-value=2.2e-07 Score=62.86 Aligned_cols=53 Identities=11% Similarity=0.068 Sum_probs=45.2
Q ss_pred hhhhhhccchhhccccCCCCccceeccccccccccchhhhccccccccccCCCceeeeEee
Q psy9488 16 TLLYDKRPRYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFR 76 (114)
Q Consensus 16 ~~~~~~LK~iIeGIlK~pP~dQrL~~kd~qlLdD~KTL~dcG~tsqtAkaQ~PA~vGLA~r 76 (114)
..+|.+||.+|+.....||+.|||+ ..+.+|+|.+||++||+. .-++|=|..|
T Consensus 44 ~~TV~~LK~~I~~~~gip~~~qrLi-~~Gk~L~D~~tL~~~gI~-------~g~~I~l~~~ 96 (101)
T 2klc_A 44 NSSVQQFKEEISKRFKSHTDQLVLI-FAGKILKDQDTLSQHGIH-------DGLTVHLVIK 96 (101)
T ss_dssp CCCHHHHHHHHHHHHTCCGGGEEEE-ETTEEECTTCCTGGGTCC-------TTCEEEEEEC
T ss_pred CCCHHHHHHHHHHHHCcChhhEEEE-ECCEECCCcCcHHHcCCC-------CCCEEEEEEc
Confidence 3789999999999999999999999 778899999999999983 3445655555
No 50
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=98.31 E-value=2.5e-07 Score=65.32 Aligned_cols=54 Identities=22% Similarity=0.198 Sum_probs=48.0
Q ss_pred hhhhhhccchhhccccCCCCccceeccccccccccchhhhccccccccccCCCceeeeEeec
Q psy9488 16 TLLYDKRPRYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQ 77 (114)
Q Consensus 16 ~~~~~~LK~iIeGIlK~pP~dQrL~~kd~qlLdD~KTL~dcG~tsqtAkaQ~PA~vGLA~r~ 77 (114)
..||.+||++|+.....||+.|||+ ..+..|+|.+||++||+ +.-.+|-|.+|.
T Consensus 101 ~~tV~~lK~~i~~~~gip~~~q~L~-~~G~~L~d~~tL~~y~i-------~~g~~l~l~~rl 154 (159)
T 3rt3_B 101 TQTVAHLKQQVSGLEGVQDDLFWLT-FEGKPLEDQLPLGEYGL-------KPLSTVFMNLRL 154 (159)
T ss_dssp TSBHHHHHHHHHHHHTCCGGGEEEE-ETTEECCTTSBGGGGTC-------CTTCEEEEEECC
T ss_pred CCCHHHHHHHHHHHHCCCHHHEEEE-ECCeecCCCCCHHHcCC-------CCCCEEEEEEec
Confidence 3789999999999999999999999 88999999999999999 455577777775
No 51
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=98.31 E-value=3.8e-07 Score=67.14 Aligned_cols=62 Identities=23% Similarity=0.382 Sum_probs=48.6
Q ss_pred hhhhhhhccchhhccccCCCCccceeccccccccccchhhhccccccccccCCCceeeeEeecCCCcccc
Q psy9488 15 LTLLYDKRPRYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQENGEFEP 84 (114)
Q Consensus 15 ~~~~~~~LK~iIeGIlK~pP~dQrL~~kd~qlLdD~KTL~dcG~tsqtAkaQ~PA~vGLA~r~~~~~FE~ 84 (114)
...||.+||++|+.....||+.|||+ -.+..|+|.+||++||+ +.-.+|=|.+|.-+|..+.
T Consensus 19 ~~~TV~~LK~~I~~~~gip~~~QrLi-~~Gk~L~D~~tL~~y~I-------~~gstI~Lvlrl~GG~k~~ 80 (169)
T 3l0w_B 19 SSDTIDNVKSKIQDKEGIPPDQQRLI-FAGKQLEDGRTLSDYNI-------QKESTLHLVLRLRGGGGET 80 (169)
T ss_dssp TTCBHHHHHHHHHHHHCCCTTTEEEE-ETTEECCTTSBGGGGTC-------CTTCEEEEEECCCC---CC
T ss_pred CCCCHHHHHHHHHHHHCcCHHHEEEE-ECCccccCcCcHHHcCC-------CCCCEEEEEEEeccccccc
Confidence 34899999999999999999999999 88899999999999999 4444566666643443333
No 52
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=98.28 E-value=2.2e-07 Score=66.88 Aligned_cols=54 Identities=20% Similarity=0.405 Sum_probs=45.8
Q ss_pred hhhhhhccchhhccccCCCCccceeccccccccccchhhhccccccccccCCCceeeeEeec
Q psy9488 16 TLLYDKRPRYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQ 77 (114)
Q Consensus 16 ~~~~~~LK~iIeGIlK~pP~dQrL~~kd~qlLdD~KTL~dcG~tsqtAkaQ~PA~vGLA~r~ 77 (114)
..+|.+||++|+.....||+.|||+ ..+..|+|.+||++||+ +.-.+|-|.+|-
T Consensus 116 ~~tV~~lK~~I~~~~gip~~~q~L~-~~g~~L~D~~tL~~y~i-------~~g~tl~l~~rl 169 (172)
T 3u30_A 116 SDTIENVKAKIQDKEGIPPDQQRLI-FAGKQLEDGRTLSDYNI-------QKESTLHLVLRL 169 (172)
T ss_dssp TCBHHHHHHHHHHHHCCCGGGCCEE-ETTEECCTTSBSGGGTC-------CTTCEEEECC--
T ss_pred CCCHHHHHHHHHHHhCCCceeEEEE-ECCccCCCCCcHHHhCC-------CCCCEEEEEEec
Confidence 3799999999999999999999999 78899999999999998 455566666653
No 53
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=98.27 E-value=4e-07 Score=62.51 Aligned_cols=55 Identities=25% Similarity=0.246 Sum_probs=47.8
Q ss_pred hhhhhhhccchhhccccCCCCccceeccccccccccchhhhccccccccccCCCceeeeEeec
Q psy9488 15 LTLLYDKRPRYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQ 77 (114)
Q Consensus 15 ~~~~~~~LK~iIeGIlK~pP~dQrL~~kd~qlLdD~KTL~dcG~tsqtAkaQ~PA~vGLA~r~ 77 (114)
...||.+||.+|+.....||+.|||+ ..+.+|+|.+||++||+ +.-.+|-|.+|.
T Consensus 54 ~~~TV~~LK~~I~~~~gip~~~QrL~-~~Gk~L~D~~tL~~y~i-------~~g~~i~lv~rl 108 (115)
T 1we7_A 54 LTDQVSVIKVKIHEATGMPAGKQKLQ-YEGIFIKDSNSLAYYNM-------ASGAVIHLALKE 108 (115)
T ss_dssp SCSBTHHHHHHHHHHSSCCTTTEEEE-ETTEEECTTSBHHHHTC-------CSSCEEEEEECC
T ss_pred CCCCHHHHHHHHHHHHCCChHHEEEE-ECCEECCCCCCHHHCCC-------CCCCEEEEEEEc
Confidence 34899999999999999999999999 67889999999999999 445567777775
No 54
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=98.27 E-value=1.8e-07 Score=64.18 Aligned_cols=42 Identities=7% Similarity=-0.109 Sum_probs=37.3
Q ss_pred hhhhhccchhhccccCCCCccceeccc--c----ccccccchhhhccc
Q psy9488 17 LLYDKRPRYHKGITKVPPKDQKLFNKD--N----REMEEGNLLQEYGL 58 (114)
Q Consensus 17 ~~~~~LK~iIeGIlK~pP~dQrL~~kd--~----qlLdD~KTL~dcG~ 58 (114)
.||.+||.+|+.+..+||+.|||+... + ++++|.+||++||+
T Consensus 37 ~TV~~LK~kIe~~~Gip~~~QrLi~~g~~g~~~~~L~~D~~tL~~Y~I 84 (97)
T 2kj6_A 37 MSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSDDSRPLGFFSP 84 (97)
T ss_dssp CCHHHHHHHHHHHHCCCTTSEEEEEECSSSCBCCCSSGGGSCHHHHCC
T ss_pred ChHHHHHHHHHHHHCcCHHHeEEEEecCCCcccceecCCcCCHHHCCC
Confidence 789999999999999999999998543 2 35799999999998
No 55
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=98.26 E-value=3.8e-07 Score=64.41 Aligned_cols=54 Identities=11% Similarity=0.071 Sum_probs=45.5
Q ss_pred hhhhhhccchhhccccCCCCccceeccccccccccchhhhccccccccccCCCceeeeEeec
Q psy9488 16 TLLYDKRPRYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQ 77 (114)
Q Consensus 16 ~~~~~~LK~iIeGIlK~pP~dQrL~~kd~qlLdD~KTL~dcG~tsqtAkaQ~PA~vGLA~r~ 77 (114)
..||.+||++|+....+|++.|||+ ..+.+|+|.+||++||+. .-.+|=|..|.
T Consensus 51 ~~TV~~LK~~I~~~~gip~~~QrLi-~~Gk~L~D~~tL~dygI~-------~gstI~lv~~~ 104 (125)
T 1j8c_A 51 NSSVQQFKEAISKRFKSQTDQLVLI-FAGKILKDQDTLIQHGIH-------DGLTVHLVIKR 104 (125)
T ss_dssp TCCHHHHHHHHHHHHCSCSSSEEEE-ETTEEESTTSCGGGTTCS-------SSEEEEEEEC-
T ss_pred CCcHHHHHHHHHHHHCcCcceEEEE-ECCEEcCCCCCHHHcCCC-------CCCEEEEEecc
Confidence 4789999999999999999999999 778899999999999994 34456666554
No 56
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=98.25 E-value=3.5e-07 Score=57.78 Aligned_cols=54 Identities=13% Similarity=0.180 Sum_probs=47.3
Q ss_pred hhhhhhccchhhccccCCCCccceeccccccccccchhhhccccccccccCCCceeeeEeec
Q psy9488 16 TLLYDKRPRYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQ 77 (114)
Q Consensus 16 ~~~~~~LK~iIeGIlK~pP~dQrL~~kd~qlLdD~KTL~dcG~tsqtAkaQ~PA~vGLA~r~ 77 (114)
..+|.+||+.|+.-...||+.|||+ -++..|+|.+||++||+ +.-.+|=|.+|.
T Consensus 23 ~~tv~~lk~~i~~~~gi~~~~qrL~-~~G~~L~d~~tl~~~~i-------~~~~~i~l~~~~ 76 (79)
T 2uyz_B 23 TTHLKKLKESYCQRQGVPMNSLRFL-FEGQRIADNHTPKELGM-------EEEDVIEVYQEQ 76 (79)
T ss_dssp TSCTHHHHHHHHHHHTCCGGGEEEE-ETTEECCTTCCHHHHTC-------CTTEEEEEEECC
T ss_pred CChHHHHHHHHHHHHCCCcccEEEE-ECCEEeCCCCCHHHcCC-------CCCCEEEEEEec
Confidence 3789999999999999999999999 88999999999999999 555667676664
No 57
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.22 E-value=5.3e-07 Score=61.35 Aligned_cols=52 Identities=19% Similarity=0.249 Sum_probs=44.8
Q ss_pred hhhhhccchhhccc--cCCCCc-cceeccccccccccchhhhccccccccccCCCceeeeEee
Q psy9488 17 LLYDKRPRYHKGIT--KVPPKD-QKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFR 76 (114)
Q Consensus 17 ~~~~~LK~iIeGIl--K~pP~d-QrL~~kd~qlLdD~KTL~dcG~tsqtAkaQ~PA~vGLA~r 76 (114)
.||.+||+.|+... .+||+. |||+ ..+..|+|.+||++||+ +.-.+|=|..|
T Consensus 45 ~TV~~LK~~i~~~~~~gip~~~~qrLi-~~Gk~L~D~~tL~~y~i-------~~g~~i~lv~~ 99 (107)
T 1x1m_A 45 YSISFLKQLIAGKLQESVPDPELIDLI-YCGRKLKDDQTLDFYGI-------QPGSTVHVLRK 99 (107)
T ss_dssp CBHHHHHHHHHHHCTTTCCCSSSEEEE-ETTEECCTTCBHHHHTC-------CTTCEEEEEES
T ss_pred CCHHHHHHHHHHHhccCCChhhcEEEE-ECCeECCCCCcHHHcCC-------CCCCEEEEEeC
Confidence 78999999999999 999999 9999 77889999999999998 33445666555
No 58
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=98.21 E-value=5.8e-07 Score=61.38 Aligned_cols=54 Identities=20% Similarity=0.405 Sum_probs=46.2
Q ss_pred hhhhhhccchhhccccCCCCccceeccccccccccchhhhccccccccccCCCceeeeEeec
Q psy9488 16 TLLYDKRPRYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQ 77 (114)
Q Consensus 16 ~~~~~~LK~iIeGIlK~pP~dQrL~~kd~qlLdD~KTL~dcG~tsqtAkaQ~PA~vGLA~r~ 77 (114)
..||.+||++|+....+||+.|||+ ..+..|+|.+||++||+ +.-++|=|.+|.
T Consensus 55 ~~TV~~LK~~I~~~~gip~~~qrLi-~~Gk~L~D~~tL~~~gI-------~~gs~I~l~~rl 108 (111)
T 2ojr_A 55 SDTIENVKAKIQDKEGIPPDQQRLI-FAGKQLEDGRTLSDYNI-------QKESTLHLVLRL 108 (111)
T ss_dssp TCBHHHHHHHHHHHHCCCTTTEEEE-ETTEECCSSCBTTTTTC-------CTTCEEEEEECC
T ss_pred CCCHHHHHHHHHHHHCcCcccEEEE-ECCEECCCCCcHHHcCC-------CCCCEEEEEEeC
Confidence 4799999999999999999999999 77889999999999999 334456666664
No 59
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=98.21 E-value=6.2e-07 Score=61.66 Aligned_cols=54 Identities=20% Similarity=0.405 Sum_probs=46.7
Q ss_pred hhhhhhccchhhccccCCCCccceeccccccccccchhhhccccccccccCCCceeeeEeec
Q psy9488 16 TLLYDKRPRYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQ 77 (114)
Q Consensus 16 ~~~~~~LK~iIeGIlK~pP~dQrL~~kd~qlLdD~KTL~dcG~tsqtAkaQ~PA~vGLA~r~ 77 (114)
..+|.+||++|+.....||+.|||+ ..+..|+|.+||++||+ +.-++|=|.+|.
T Consensus 96 ~~tv~~lK~~i~~~~gi~~~~qrL~-~~g~~L~d~~tL~~~~i-------~~~~~i~l~~r~ 149 (152)
T 3b08_A 96 SDTIENVKAKIQDKEGIPPDQQRLI-FAGKQLEDGRTLSDYNI-------QKESTLHLVLRL 149 (152)
T ss_dssp TCBHHHHHHHHHHHHCCCGGGEEEE-ETTEECCTTSBTGGGTC-------CTTCEEEEEECC
T ss_pred CCcHHHHHHHHHHHhCcChhhEEEE-ECCEECCCCCCHHHcCC-------CCCCEEEEEEec
Confidence 3789999999999999999999999 78889999999999998 444566676664
No 60
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=98.15 E-value=1.1e-06 Score=61.28 Aligned_cols=53 Identities=9% Similarity=0.117 Sum_probs=46.1
Q ss_pred hhhhhhccchhhccccCCCCccceeccccccccccchhhhccccccccccCCCceeeeEeec
Q psy9488 16 TLLYDKRPRYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQ 77 (114)
Q Consensus 16 ~~~~~~LK~iIeGIlK~pP~dQrL~~kd~qlLdD~KTL~dcG~tsqtAkaQ~PA~vGLA~r~ 77 (114)
..||.+||.+|+.-..+||+.|||+ -.+.+|+|.+||+|||+ +.-++| +.++.
T Consensus 39 ~~TV~~lK~kI~~k~gip~~qQrLI-~~GKiL~D~~TL~~y~I-------~~gsti-~vl~l 91 (100)
T 1wju_A 39 HITGRELRSKIAETFGLQENYIKIV-INKKQLQLGKTLEEQGV-------AHNVKA-MVLEL 91 (100)
T ss_dssp SSBHHHHHHHHHHHTTCCSTTCEEE-ETTEECCTTSBHHHHTC-------CSSEEE-EEECC
T ss_pred cCHHHHHHHHHHHHHCcCHHHeEEE-eCCeECCCCCcHHHcCC-------CCCCEE-EEEEE
Confidence 3799999999999999999999998 77889999999999999 556666 66653
No 61
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=98.14 E-value=7e-07 Score=61.03 Aligned_cols=45 Identities=11% Similarity=0.110 Sum_probs=38.4
Q ss_pred hhhhhhhccchhhccccCCCCccceecccc-----------cc---ccccchhhhcccc
Q psy9488 15 LTLLYDKRPRYHKGITKVPPKDQKLFNKDN-----------RE---MEEGNLLQEYGLT 59 (114)
Q Consensus 15 ~~~~~~~LK~iIeGIlK~pP~dQrL~~kd~-----------ql---LdD~KTL~dcG~t 59 (114)
...||.+||++|+.++.+||+.|||+.... ++ ++|.+||++||+.
T Consensus 26 ~~~Tv~~LK~kI~~~~gip~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~~tL~~~gi~ 84 (107)
T 1wf9_A 26 PHITVSQLKTLIQDQLQIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNLA 84 (107)
T ss_dssp TTSBHHHHHHHHHHHSCCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCCC
T ss_pred CCCcHHHHHHHHHHHhCcCcccCEEEECCccccccCccccccccccCCCCCCHHHCCCC
Confidence 558999999999999999999999983322 34 7999999999993
No 62
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=98.12 E-value=6.1e-07 Score=58.75 Aligned_cols=43 Identities=19% Similarity=0.268 Sum_probs=37.9
Q ss_pred hhhhhhccchhhccccCCCCccceeccccccccc-cchhhhcccc
Q psy9488 16 TLLYDKRPRYHKGITKVPPKDQKLFNKDNREMEE-GNLLQEYGLT 59 (114)
Q Consensus 16 ~~~~~~LK~iIeGIlK~pP~dQrL~~kd~qlLdD-~KTL~dcG~t 59 (114)
..||.+||+.|+....+||+.|||+ ..+..|+| .+||++||+.
T Consensus 31 ~~TV~~LK~~i~~~~gip~~~qrL~-~~Gk~L~D~~~~L~~~~i~ 74 (92)
T 1wxv_A 31 EPVVQDLAQVVEEVIGVPQSFQKLI-FKGKSLKEMETPLSALGIQ 74 (92)
T ss_dssp SCBHHHHHHHHHHHTCCCTTTCEEE-ETTEEECCSSSBHHHHTCC
T ss_pred cCcHHHHHHHHHHHHCcCHHHEEEE-ECCeecCCCcccHHHCCCC
Confidence 3789999999999999999999999 56777777 7899999983
No 63
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=98.11 E-value=1.1e-06 Score=58.78 Aligned_cols=54 Identities=13% Similarity=0.180 Sum_probs=47.9
Q ss_pred hhhhhhccchhhccccCCCCccceeccccccccccchhhhccccccccccCCCceeeeEeec
Q psy9488 16 TLLYDKRPRYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQ 77 (114)
Q Consensus 16 ~~~~~~LK~iIeGIlK~pP~dQrL~~kd~qlLdD~KTL~dcG~tsqtAkaQ~PA~vGLA~r~ 77 (114)
..+|.+||++|+.-...||+.|||+ -++..|+|.+||++||+ +.-.+|=|.+|.
T Consensus 41 ~~tv~~lK~~i~~~~gip~~~qrLi-f~Gk~L~d~~tl~dy~i-------~~g~~I~l~~~~ 94 (97)
T 1wyw_B 41 TTHLKKLKESYCQRQGVPMNSLRFL-FEGQRIADNHTPKELGM-------EEEDVIEVYQEQ 94 (97)
T ss_dssp TSCTHHHHHHHHHHHTCCGGGEEEE-ETTEECCTTCCHHHHTC-------CTTCEEEEEESS
T ss_pred CCcHHHHHHHHHHHHCCChhhEEEE-ECCeEcCCCCCHHHCCC-------CCCCEEEEEEec
Confidence 3789999999999999999999999 89999999999999999 556677777764
No 64
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=98.09 E-value=1.6e-06 Score=59.57 Aligned_cols=45 Identities=18% Similarity=0.383 Sum_probs=40.9
Q ss_pred hhhhhhhccchhhccccCCCCccceeccccccccccchhhhccccc
Q psy9488 15 LTLLYDKRPRYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTS 60 (114)
Q Consensus 15 ~~~~~~~LK~iIeGIlK~pP~dQrL~~kd~qlLdD~KTL~dcG~ts 60 (114)
...||.+||+.|+.....||+.|||+ ..+..|+|.+||++||+.+
T Consensus 19 ~~~tv~~lK~~i~~~~gip~~~q~L~-~~g~~L~d~~tL~~~~i~~ 63 (152)
T 3b08_A 19 PSDTIENVKAKIQDKEGIPPDQQRLI-FAGKQLEDGRTLSDYNIQK 63 (152)
T ss_dssp TTCBHHHHHHHHHHHHCCCGGGEEEE-ETTEECCTTSBTGGGTCCT
T ss_pred CCCCHHHHHHHHHHHHCcChHHeEEE-ECCeECcCcccHHHhccCC
Confidence 34899999999999999999999999 6788899999999999953
No 65
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.08 E-value=8.5e-07 Score=59.35 Aligned_cols=42 Identities=24% Similarity=0.207 Sum_probs=37.0
Q ss_pred hhhhhhccchhhccccCCCCccceeccccccccccchhhhcccc
Q psy9488 16 TLLYDKRPRYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLT 59 (114)
Q Consensus 16 ~~~~~~LK~iIeGIlK~pP~dQrL~~kd~qlLdD~KTL~dcG~t 59 (114)
..||.+||++|+....+||+.|||+ ..+.+|||. ||++||+.
T Consensus 36 ~~TV~~LK~~I~~~tgip~~~QrL~-~~Gk~Ldd~-tL~~~~i~ 77 (95)
T 1v86_A 36 DSTGSELKQKIHSITGLPPAMQKVM-YKGLVPEDK-TLREIKVT 77 (95)
T ss_dssp TSBHHHHHHHHHHHHCSCSTTCCCB-SSSBCCSSS-BHHHHCCC
T ss_pred CCcHHHHHHHHHHHHCcCHHHeEEE-ECCeeCCcC-cHHHCCCC
Confidence 3899999999999999999999999 666677665 99999983
No 66
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.05 E-value=1.3e-06 Score=61.04 Aligned_cols=42 Identities=12% Similarity=-0.050 Sum_probs=39.6
Q ss_pred hhhhhhccchhhccccCCCCccceeccccccccccchhhhccc
Q psy9488 16 TLLYDKRPRYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGL 58 (114)
Q Consensus 16 ~~~~~~LK~iIeGIlK~pP~dQrL~~kd~qlLdD~KTL~dcG~ 58 (114)
..||.+||.+|+.-...||+.|||+ ..+.+|+|.+||+|||+
T Consensus 48 ~dTV~~lK~~Ia~k~Gip~~qQrLi-~~Gk~L~D~~TL~dygI 89 (100)
T 1uh6_A 48 DDTIGDLKKLIAAQTGTRWNKIVLK-KWYTIFKDHVSLGDYEI 89 (100)
T ss_dssp TSBHHHHHHHHHHHHCCCGGGCEEE-ETTEECCSSCBHHHHTC
T ss_pred CCcHHHHHHHHHHHhCCCHHHEEEE-ECCEECCCCCCHHHcCC
Confidence 3789999999999999999999999 77999999999999999
No 67
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=98.04 E-value=5.8e-07 Score=66.01 Aligned_cols=55 Identities=20% Similarity=0.383 Sum_probs=0.0
Q ss_pred hhhhhhhccchhhccccCCCCccceeccccccccccchhhhccccccccccCCCceeeeEeec
Q psy9488 15 LTLLYDKRPRYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQ 77 (114)
Q Consensus 15 ~~~~~~~LK~iIeGIlK~pP~dQrL~~kd~qlLdD~KTL~dcG~tsqtAkaQ~PA~vGLA~r~ 77 (114)
...||.+||..|+....+||+.|||+ -.+..|+|.+||++||+. .-.+|=|.+|.
T Consensus 19 ~~~TV~~LK~~I~~~~gip~~~QrLi-~~Gk~L~D~~tL~dygI~-------~gstL~Lvlrl 73 (152)
T 3u5c_f 19 SSDTIDNVKSKIQDKEGIPPDQQRLI-FAGKQLEDGRTLSDYNIQ-------KESTLHLVLRL 73 (152)
T ss_dssp ---------------------------------------------------------------
T ss_pred CCCCHHHHHHHHHHHhCCCHHHEEEE-ECCEEccccCcHHHcCCC-------CCCEEEEEeec
Confidence 34899999999999999999999999 888999999999999994 34456666664
No 68
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=98.03 E-value=1.3e-06 Score=59.96 Aligned_cols=43 Identities=7% Similarity=-0.003 Sum_probs=39.8
Q ss_pred hhhhhhhccchh-hccccCCCCccceeccccccccccchhhhccc
Q psy9488 15 LTLLYDKRPRYH-KGITKVPPKDQKLFNKDNREMEEGNLLQEYGL 58 (114)
Q Consensus 15 ~~~~~~~LK~iI-eGIlK~pP~dQrL~~kd~qlLdD~KTL~dcG~ 58 (114)
...||.+||+.| +.....||++|||+ -.|.+|+|.+||++||+
T Consensus 40 ~~~TV~~lK~~I~~~~~gip~~~QrLi-~~Gk~L~D~~tL~dy~I 83 (98)
T 4a20_A 40 PSDTILQIKQHLISEEKASHISEIKLL-LKGKVLHDNLFLSDLKV 83 (98)
T ss_dssp TTCBHHHHHHHHHHTTSCSCGGGEEEE-ETTEEECTTCBGGGSCC
T ss_pred CCChHHHHHHHHHHHhcCCChhhEEEE-ECCEECcCcCCHHHcCc
Confidence 458999999999 88888999999999 78899999999999998
No 69
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=98.00 E-value=2.5e-06 Score=64.85 Aligned_cols=55 Identities=20% Similarity=0.384 Sum_probs=48.2
Q ss_pred hhhhhhhccchhhccccCCCCccceeccccccccccchhhhccccccccccCCCceeeeEeec
Q psy9488 15 LTLLYDKRPRYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQ 77 (114)
Q Consensus 15 ~~~~~~~LK~iIeGIlK~pP~dQrL~~kd~qlLdD~KTL~dcG~tsqtAkaQ~PA~vGLA~r~ 77 (114)
...||.+||++|+....+||++|||+ -.+.+|+|.+||++||+ +.-.+|=|.+|.
T Consensus 124 ~s~TV~~LK~kI~~~~gIp~~~QrLi-~~Gk~L~D~~tL~dygI-------~~gstI~Lvlrl 178 (189)
T 3q3f_A 124 PSDTIENVKAKIQDKEGIPPDQQRLI-FAGKQLEDGRTLSDYNI-------QKESTLHLVLRL 178 (189)
T ss_dssp TTCBHHHHHHHHHHHHCCCGGGCCEE-ETTEECCTTCBGGGGTC-------CTTCEEEECCCC
T ss_pred CCCcHHHHHHHHHhccCCCHHHEEEE-ECCEECCCCCCHHHCCC-------CCCCEEEEEEEc
Confidence 34899999999999999999999999 88999999999999998 455567777765
No 70
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=97.98 E-value=2.9e-06 Score=59.04 Aligned_cols=45 Identities=11% Similarity=0.020 Sum_probs=41.4
Q ss_pred hhhhhhhhccchhhccccCCCCccceeccccccccccchhhhcccc
Q psy9488 14 YLTLLYDKRPRYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLT 59 (114)
Q Consensus 14 ~~~~~~~~LK~iIeGIlK~pP~dQrL~~kd~qlLdD~KTL~dcG~t 59 (114)
+...||-.||++|+.-.-.||+.|||+ +.+..|+|.+||+|||+.
T Consensus 39 ~p~DTI~~LK~~I~~k~Gip~~qQrLi-f~Gk~LkD~~TL~dY~I~ 83 (93)
T 3plu_A 39 LGEDSVGDFKKVLSLQIGTQPNKIVLQ-KGGSVLKDHISLEDYEVH 83 (93)
T ss_dssp ETTSBHHHHHHHHHHHHTCCGGGEEEE-ETTEECCTTSBTGGGTCC
T ss_pred CCcCHHHHHHHHHHHHhCCCHHHEEEE-eCCEEccCcCCHHHcCCC
Confidence 445899999999999999999999999 899999999999999993
No 71
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=97.97 E-value=2.7e-06 Score=56.66 Aligned_cols=43 Identities=19% Similarity=0.131 Sum_probs=37.6
Q ss_pred hhhhhccchhhccccCCCCccceecccc------c-cccccchhhhcccc
Q psy9488 17 LLYDKRPRYHKGITKVPPKDQKLFNKDN------R-EMEEGNLLQEYGLT 59 (114)
Q Consensus 17 ~~~~~LK~iIeGIlK~pP~dQrL~~kd~------q-lLdD~KTL~dcG~t 59 (114)
.||.+||.+|+.++..||..|||+..++ . +.+|.+||+.||+.
T Consensus 33 ~TV~~LK~~i~~~~gip~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i~ 82 (97)
T 1wjn_A 33 MTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVE 82 (97)
T ss_dssp SBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCC
T ss_pred CCHHHHHHHHHHHHCCChhHeEEEEEcCCCCceeeccCCCcccHhhcCCC
Confidence 7999999999999999999999996632 1 45999999999983
No 72
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.96 E-value=5.2e-06 Score=60.16 Aligned_cols=74 Identities=7% Similarity=0.147 Sum_probs=62.2
Q ss_pred hhhhhhccchhhccccCCCCccceeccccccccccchhhhccccccccccCCCceeeeEeec-CCCcccceeeecCCCCC
Q psy9488 16 TLLYDKRPRYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQ-ENGEFEPLELTPYSSPP 94 (114)
Q Consensus 16 ~~~~~~LK~iIeGIlK~pP~dQrL~~kd~qlLdD~KTL~dcG~tsqtAkaQ~PA~vGLA~r~-~~~~FE~L~I~P~SsPP 94 (114)
..+|-+||..++.-++.|++.|||. ..|.+|.|..||.+||+ +.-.+|-|..+. +.+.| -|-+....+
T Consensus 36 d~TV~dLKe~ls~~~~iP~e~qrLI-y~GKiLKD~eTL~~~gI-------k~g~TIhLvi~s~~p~~~---p~~~~~~~~ 104 (118)
T 2daf_A 36 DTILKYLKDHFSHLLGIPHSVLQIR-YSGKILKNNETLVQHGV-------KPQEIVQVEIFSTNPDLY---PVRRIDGLT 104 (118)
T ss_dssp SSCSHHHHHHHHHHHTCCTTTEEEE-ETTEEECSSCCHHHHSC-------CSSCEEEEEEEESCTTTS---CCCCCCSCC
T ss_pred CCcHHHHHHHHHhhhCCChHHEEEE-ECCeEcCCcchHHHcCC-------CCCCEEEEEEecCCCccC---cceeccCcc
Confidence 3889999999999999999999999 88999999999999999 777889999886 23333 355666777
Q ss_pred CCcccc
Q psy9488 95 DLPYVM 100 (114)
Q Consensus 95 ~LPdvM 100 (114)
|.|||.
T Consensus 105 ~~~~vi 110 (118)
T 2daf_A 105 DVSQII 110 (118)
T ss_dssp CCCCCC
T ss_pred cCCceE
Confidence 888875
No 73
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=97.94 E-value=4.1e-06 Score=55.06 Aligned_cols=51 Identities=8% Similarity=-0.023 Sum_probs=42.5
Q ss_pred hhhhhhccchhhccccCCCCccceecccccccccc-chhhhccccccccccCCCceeeeEeec
Q psy9488 16 TLLYDKRPRYHKGITKVPPKDQKLFNKDNREMEEG-NLLQEYGLTSAVAKAQSPALVGLAFRQ 77 (114)
Q Consensus 16 ~~~~~~LK~iIeGIlK~pP~dQrL~~kd~qlLdD~-KTL~dcG~tsqtAkaQ~PA~vGLA~r~ 77 (114)
..+|.+||++|+... |+.|||+ ..+.+|+|. +||++||+ +.-.+|=|.++.
T Consensus 27 ~~TV~~LK~~i~~~~---~~~qrLi-~~Gk~L~D~~~tL~~y~i-------~~g~~i~l~~~~ 78 (95)
T 1wia_A 27 EDTVGTLKSKYFPGQ---ESQMKLI-YQGRLLQDPARTLSSLNI-------TNNCVIHCHRSP 78 (95)
T ss_dssp SSBHHHHHHHHSSST---TTTCEEE-ETTEECCCSSCBTTTTTC-------CTTEEEEEECCC
T ss_pred CCcHHHHHHHHHhhC---cCcEEEE-ECCEEccCCcCCHHHcCC-------CCCCEEEEEECC
Confidence 378999999999987 9999999 778899888 99999998 444566666653
No 74
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=97.93 E-value=2.9e-06 Score=58.20 Aligned_cols=45 Identities=20% Similarity=0.242 Sum_probs=37.9
Q ss_pred hhhhhhhhccchhhccc-cCC-CCccceeccccccccccchhhhc--ccc
Q psy9488 14 YLTLLYDKRPRYHKGIT-KVP-PKDQKLFNKDNREMEEGNLLQEY--GLT 59 (114)
Q Consensus 14 ~~~~~~~~LK~iIeGIl-K~p-P~dQrL~~kd~qlLdD~KTL~dc--G~t 59 (114)
....||.+||.+|+.-+ ..| |++|||+ -.+.+|+|.+||++| |+.
T Consensus 43 ~~~~TV~~LK~~I~~~~~g~pp~~~QrLI-y~Gk~L~D~~tL~~y~~~I~ 91 (99)
T 2kdb_A 43 FLNWTVGKLKTHLSNVYPSKPLTKDQRLV-YSGRLLPDHLQLKDILRKQD 91 (99)
T ss_dssp CTTSBHHHHHHHHHHHSTTCCCTTTCCEE-ETTEEECTTSBTHHHHTTTC
T ss_pred CCCCHHHHHHHHHHHHhcCCCChhhEEEE-ECCEECCCCCCHHHHhcCCC
Confidence 34589999999999854 445 5999999 789999999999999 983
No 75
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=97.91 E-value=2.6e-06 Score=56.17 Aligned_cols=44 Identities=23% Similarity=0.208 Sum_probs=39.1
Q ss_pred hhhhhhccchhhccccCCCCccceec--cccccccccchhhhcccc
Q psy9488 16 TLLYDKRPRYHKGITKVPPKDQKLFN--KDNREMEEGNLLQEYGLT 59 (114)
Q Consensus 16 ~~~~~~LK~iIeGIlK~pP~dQrL~~--kd~qlLdD~KTL~dcG~t 59 (114)
..+|.+||+.|+....+||+.|||+. ..+..|+|.+||++||+.
T Consensus 27 ~~TV~~lK~~I~~~~gip~~~QkLi~~k~~Gk~L~D~~~L~~~~i~ 72 (90)
T 1v5t_A 27 DDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKLGALKLK 72 (90)
T ss_dssp SSBHHHHHHHHHHHTCCCTTTCEEESCEETTEECCTTSBHHHHTCC
T ss_pred CCCHHHHHHHHHHHHCcCHHHeEEEeeccCCcCcCCCCCHHHcCCC
Confidence 48999999999999999999999983 256788999999999983
No 76
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=97.85 E-value=3.4e-06 Score=56.69 Aligned_cols=42 Identities=12% Similarity=0.000 Sum_probs=38.6
Q ss_pred hhhhhhhccchhhccccCCCCccceeccccccccccchhhhccc
Q psy9488 15 LTLLYDKRPRYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGL 58 (114)
Q Consensus 15 ~~~~~~~LK~iIeGIlK~pP~dQrL~~kd~qlLdD~KTL~dcG~ 58 (114)
...+|.+||++|+....+||+.|||+ ..+.+|+|. ||++||+
T Consensus 26 ~~~TV~~lK~~I~~~tgip~~~QkLi-~~Gk~L~D~-tL~~~~I 67 (96)
T 1wgg_A 26 TDEPPMVFKAQLFALTGVQPARQKVM-VKGGTLKDD-DWGNIKM 67 (96)
T ss_dssp SSSCHHHHHHHHHHHTCCCTTTSCCE-ETTEECCSS-CCCSCCC
T ss_pred CCCcHHHHHHHHHHHHCcCHHHeEEE-ECCcCCCCC-CHHHCCC
Confidence 34799999999999999999999999 778889999 9999998
No 77
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.82 E-value=7.3e-06 Score=54.66 Aligned_cols=46 Identities=11% Similarity=0.116 Sum_probs=38.8
Q ss_pred hhhhhhhccchhhcc-ccCCCCccceec-cccccccccchhhhccccc
Q psy9488 15 LTLLYDKRPRYHKGI-TKVPPKDQKLFN-KDNREMEEGNLLQEYGLTS 60 (114)
Q Consensus 15 ~~~~~~~LK~iIeGI-lK~pP~dQrL~~-kd~qlLdD~KTL~dcG~ts 60 (114)
...||.+||++|+.. -+.||+.|||.. ..+..|+|.+||++||+.+
T Consensus 32 ~~~TV~~lK~~I~~~~~~i~~~~QrL~~~~~Gk~L~D~~tL~~y~i~~ 79 (88)
T 2dzj_A 32 PHATIAEIKNLFTKTHPQWYPARQSLRLDPKGKSLKDEDVLQKLPVGT 79 (88)
T ss_dssp SSCBHHHHHHHHHHHCSSSCTTTCCEESSTTSCCCCTTCBTTTSSCCS
T ss_pred CCCcHHHHHHHHHHHhcCCChHHeEEEecCCCcCcCCCCCHHHcCCCC
Confidence 347899999999994 688999999983 2477999999999999843
No 78
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=97.77 E-value=1.2e-05 Score=57.01 Aligned_cols=54 Identities=13% Similarity=0.024 Sum_probs=42.1
Q ss_pred hhhhhccchhhcc--------ccCCCCccceeccccccccccchhhhccccccccccCCCceeeeEee
Q psy9488 17 LLYDKRPRYHKGI--------TKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFR 76 (114)
Q Consensus 17 ~~~~~LK~iIeGI--------lK~pP~dQrL~~kd~qlLdD~KTL~dcG~tsqtAkaQ~PA~vGLA~r 76 (114)
.||.+||.+|+.- +-.||+.|||+ ..+.+|+|.+||++||+.. +...+|=|.+|
T Consensus 37 ~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLI-y~GK~LeD~~TL~~y~I~~-----~~~~tlhLvlr 98 (116)
T 1wgh_A 37 DSASDIAKHVYDNWPMDWEEEQVSSPNILRLI-YQGRFLHGNVTLGALKLPF-----GKTTVMHLVAR 98 (116)
T ss_dssp CBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEE-ETTEEECSSCBTTTTTCCS-----SCEEEEEEEEC
T ss_pred CHHHHHHHHHHHhcccccccCCCCChHHEEEE-ECCcCCCCCCcHHHcCCCC-----CCceEEEEEcc
Confidence 7899999999972 22479999999 8999999999999999831 22345556666
No 79
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=97.75 E-value=9.5e-06 Score=65.88 Aligned_cols=53 Identities=21% Similarity=0.422 Sum_probs=44.6
Q ss_pred hhhhhhccchhhccccCCCCccceeccccccccccchhhhccccccccccCCCceeeeEee
Q psy9488 16 TLLYDKRPRYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFR 76 (114)
Q Consensus 16 ~~~~~~LK~iIeGIlK~pP~dQrL~~kd~qlLdD~KTL~dcG~tsqtAkaQ~PA~vGLA~r 76 (114)
..||.+||++|+....+||+.|||+ ..+.+|+|.+||++||+ +.-.+|=|.+|
T Consensus 253 s~TV~dLK~kI~~~~GIp~~~QRLi-~~Gk~L~D~~TLsdygI-------~~gstL~LvlR 305 (307)
T 3ai5_A 253 SDTIENVKAKIQDKEGIPPDQQRLI-FAGKQLEDGRTLSDYNI-------QKESTLHLVLR 305 (307)
T ss_dssp TCBHHHHHHHHHHHHCCCGGGCEEE-ETTEECCTTSBTGGGTC-------CTTCEEEEEC-
T ss_pred CCcHHHHHHHHHHHHCcChHHEEEE-eCCeecCCCCCHHHcCC-------CCCCEEEEEEe
Confidence 4789999999999999999999999 67889999999999999 33445555554
No 80
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.74 E-value=1.3e-05 Score=55.43 Aligned_cols=54 Identities=13% Similarity=0.111 Sum_probs=43.6
Q ss_pred hhhhhhccchhhccccCCCCccceec-cccccccccchhhhccccccccccCCCceeeeEeec
Q psy9488 16 TLLYDKRPRYHKGITKVPPKDQKLFN-KDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQ 77 (114)
Q Consensus 16 ~~~~~~LK~iIeGIlK~pP~dQrL~~-kd~qlLdD~KTL~dcG~tsqtAkaQ~PA~vGLA~r~ 77 (114)
..+|.+||++|+....+||+.|||+. +-+. |+|.++|++||+. .=.++=|.++.
T Consensus 28 ~~TV~~LK~~I~~~tgIpp~~QkLi~~~~gk-L~D~~tLs~~~I~-------~gstL~lvl~~ 82 (100)
T 2dzm_A 28 TCTVGEIKQILENELQIPVSKMLLKGWKTGD-VEDSTVLKSLHLP-------KNNSLYVLTPD 82 (100)
T ss_dssp TSBHHHHHHHHHHHHCCCTTTCCEECCSSSC-CCTTSBHHHHCCC-------SEEEEEECCSS
T ss_pred CCcHHHHHHHHHHHHCCChhHeEEEccCCCC-CCCcCCHHHcCCC-------CCCEEEEEecC
Confidence 37899999999999999999999963 4455 8999999999993 33456666664
No 81
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=97.74 E-value=6.2e-06 Score=58.07 Aligned_cols=43 Identities=14% Similarity=0.037 Sum_probs=39.4
Q ss_pred hhhhhhhccchhhccccCCCCccceeccccccccccchhhhccc
Q psy9488 15 LTLLYDKRPRYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGL 58 (114)
Q Consensus 15 ~~~~~~~LK~iIeGIlK~pP~dQrL~~kd~qlLdD~KTL~dcG~ 58 (114)
...||..||.+|+.-...||+.|||+ -.+.+++|.+||++||+
T Consensus 45 ps~TV~~LK~~I~~k~Gipp~~QRli-~ggkll~D~~TL~~ygI 87 (105)
T 4dbg_A 45 PDMTVASLKDMVFLDYGFPPVLQQWV-IGQRLARDQETLHSHGV 87 (105)
T ss_dssp TTCBHHHHHHHHHHHHCCCGGGEEEE-ETTEEECTTCBTGGGTC
T ss_pred CcChHHHHHHHHHHHhCCCHHHEEEe-ccCeEccCcCcHHHcCC
Confidence 34799999999999999999999988 67779999999999998
No 82
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=97.64 E-value=2.6e-05 Score=55.86 Aligned_cols=55 Identities=13% Similarity=0.048 Sum_probs=42.9
Q ss_pred hhhhhccchhhc------cccC--CCCccceeccccccccccchhhhccccccccccCCCceeeeEeec
Q psy9488 17 LLYDKRPRYHKG------ITKV--PPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQ 77 (114)
Q Consensus 17 ~~~~~LK~iIeG------IlK~--pP~dQrL~~kd~qlLdD~KTL~dcG~tsqtAkaQ~PA~vGLA~r~ 77 (114)
.||.+||..|+. --.. ||++|||+ ..|.+|+|.+||++||+.. ....++=|.+|.
T Consensus 38 ~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLI-y~GK~LeD~~TL~~y~I~~-----~~~~tlhlv~r~ 100 (125)
T 2gow_A 38 DSASDIAKHVYDNWPMDWEEEQVSSPNILRLI-YQGRFLHGNVTLGALKLPF-----GKTTVMHLVARE 100 (125)
T ss_dssp SBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEE-SSSSEEESSCBTGGGCCCT-----TSEEEEEEEECS
T ss_pred cHHHHHHHHHHHHCCcccccCCCCChHHEEEE-ECCcCCCCCCcHHHcCCCC-----CCceEEEEEecC
Confidence 789999999997 2233 58999999 9999999999999999832 133456666664
No 83
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=97.60 E-value=9.3e-06 Score=56.72 Aligned_cols=54 Identities=11% Similarity=0.177 Sum_probs=44.3
Q ss_pred hhhhhhccchhhccccCCCC---------------ccceeccccccc-cccchhhhccccccccccCCCceeeeEeec
Q psy9488 16 TLLYDKRPRYHKGITKVPPK---------------DQKLFNKDNREM-EEGNLLQEYGLTSAVAKAQSPALVGLAFRQ 77 (114)
Q Consensus 16 ~~~~~~LK~iIeGIlK~pP~---------------dQrL~~kd~qlL-dD~KTL~dcG~tsqtAkaQ~PA~vGLA~r~ 77 (114)
..||.+||+.|+.-...||+ .|+|+ -.+..| ||.+||+|||+ +.=.+|-|..|.
T Consensus 27 ~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li-~~Gk~L~dD~~tL~dygI-------~~g~~l~lv~~l 96 (105)
T 1v2y_A 27 NATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLT-SAGEKLTEDRKKLRDYGI-------RNRDEVSFIKKL 96 (105)
T ss_dssp TCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEE-SSSCEECCSSSBHHHHTC-------CSSEEEEEEECS
T ss_pred CChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEE-eCCcCccCCcCCHHHcCC-------CCCCEEEEEehh
Confidence 37999999999999988885 45898 677776 68899999999 666677777774
No 84
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=97.58 E-value=5.8e-05 Score=54.61 Aligned_cols=60 Identities=12% Similarity=0.150 Sum_probs=46.0
Q ss_pred hhhhhhccchh-----hccccCCC--CccceeccccccccccchhhhccccccccccCCCceeeeEeec
Q psy9488 16 TLLYDKRPRYH-----KGITKVPP--KDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQ 77 (114)
Q Consensus 16 ~~~~~~LK~iI-----eGIlK~pP--~dQrL~~kd~qlLdD~KTL~dcG~tsqtAkaQ~PA~vGLA~r~ 77 (114)
..||..||++| ++--..|| +.|||+ ..+.+|+|.+||+||++....- +....++=|.+|.
T Consensus 37 sdTV~~lK~kI~~~~p~dkegiP~~~~qQrLI-y~GK~LeD~~TLsdy~I~~~~~-~~~v~tmhlVlrl 103 (126)
T 1se9_A 37 ATTVSALKETVISEWPREKENGPKTVKEVKLI-SAGKVLENSKTVKDYRSPVSNL-AGAVTTMHVIIQA 103 (126)
T ss_dssp TCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEE-ETTEECCTTSBGGGGSCCTTSC-TTCCEEEEEEECC
T ss_pred cCHHHHHHHHHHhhcccccccCCCChhhEEEE-ECCeECcCCCcHHHcCCCcCCc-cCCcEEEEEEecc
Confidence 47899999999 45444565 899999 8999999999999999954322 3345677777775
No 85
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=97.45 E-value=3.7e-05 Score=63.45 Aligned_cols=43 Identities=12% Similarity=0.143 Sum_probs=39.2
Q ss_pred hhhhhhccchhhc---cccCCCCccceeccccccccccchhhhcccc
Q psy9488 16 TLLYDKRPRYHKG---ITKVPPKDQKLFNKDNREMEEGNLLQEYGLT 59 (114)
Q Consensus 16 ~~~~~~LK~iIeG---IlK~pP~dQrL~~kd~qlLdD~KTL~dcG~t 59 (114)
..||.+||++|+. ...+|++.|||+ ..+.+|+|.+||++||+.
T Consensus 27 ~~TV~~LK~~I~~~~~~~gip~~~QrLi-y~GK~L~D~~tL~dygI~ 72 (368)
T 1oqy_A 27 DETVKVLKEKIEAEKGRDAFPVAGQKLI-YAGKILSDDVPIRDYRID 72 (368)
T ss_dssp TCBHHHHHHHHHHHTCSSSCCSTEEEEE-SSSSEECSSSBTTTTCCC
T ss_pred CChHHHHHHHHHHHhCcCCCChhheEEE-ECCeecCCcCCHHHcCCC
Confidence 4799999999999 566999999999 889999999999999995
No 86
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=97.10 E-value=0.00015 Score=47.14 Aligned_cols=46 Identities=11% Similarity=0.099 Sum_probs=37.8
Q ss_pred hhhhhhhhccchhhccccCCCCccceecc-cccccc---ccchhhhcccc
Q psy9488 14 YLTLLYDKRPRYHKGITKVPPKDQKLFNK-DNREME---EGNLLQEYGLT 59 (114)
Q Consensus 14 ~~~~~~~~LK~iIeGIlK~pP~dQrL~~k-d~qlLd---D~KTL~dcG~t 59 (114)
+...||.+||..|+.-..+||+.|||... ....|+ |++||++||+.
T Consensus 18 ~~~~Tv~~Lk~~I~~~~gi~~~~qrL~~~~p~k~l~l~~~~~tL~~~gl~ 67 (86)
T 2kzr_A 18 SSRTRLRELQGQIAAITGIAPGSQRILVGYPPECLDLSDRDITLGDLPIQ 67 (86)
T ss_dssp CTTCBHHHHHHHHHHHTCCCTTTCCCEESSCCCCCCCCCSSCBTTTSSCC
T ss_pred CCCCCHHHHHHHHHHHhCCCccceEEEeCCCCcccccCCCCCCHHHcCCC
Confidence 44589999999999999999999999843 234553 89999999994
No 87
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=97.09 E-value=7.8e-05 Score=57.14 Aligned_cols=38 Identities=5% Similarity=-0.189 Sum_probs=0.0
Q ss_pred hhhhhhccchhhccccCCCCccceeccccccccccchhh
Q psy9488 16 TLLYDKRPRYHKGITKVPPKDQKLFNKDNREMEEGNLLQ 54 (114)
Q Consensus 16 ~~~~~~LK~iIeGIlK~pP~dQrL~~kd~qlLdD~KTL~ 54 (114)
..||.+||.+|+....+||++|||+ -.+..|+|++||+
T Consensus 20 sdTV~~LK~kI~~keGIP~~qQRLI-f~GK~LeD~~TLs 57 (189)
T 2xzm_9 20 GTSVLDLKSQISQDMGFEIDMMTLV-NNGFIAPNTELVT 57 (189)
T ss_dssp ---------------------------------------
T ss_pred cChHHHHHHHHHHHhCcChhHEEEE-ecCeECCCCCccc
Confidence 3899999999999999999999999 8899999999999
No 88
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=96.91 E-value=0.00046 Score=55.54 Aligned_cols=45 Identities=20% Similarity=0.140 Sum_probs=40.2
Q ss_pred hhhhhhhccchhhccccCCCCccceec-c-ccccccccchhhhcccc
Q psy9488 15 LTLLYDKRPRYHKGITKVPPKDQKLFN-K-DNREMEEGNLLQEYGLT 59 (114)
Q Consensus 15 ~~~~~~~LK~iIeGIlK~pP~dQrL~~-k-d~qlLdD~KTL~dcG~t 59 (114)
...||.+||+.|+..+.+||+.|+|.. | .|.+|+|..||++||+.
T Consensus 23 ~~~Tv~~lK~~I~~~tgVpp~~QkLi~~k~~Gk~l~D~~~L~~~~ik 69 (320)
T 3shq_A 23 DQDTVEVLRHEIFRKTQVRPERQKLLNLKYKGKTAADNVKISALELK 69 (320)
T ss_dssp TTSBHHHHHHHHHHHHCCCGGGCEETTCBSSSSBCCTTSBTTSSCCC
T ss_pred CCCcHHHHHHHHHHHHCcCHHHeEEeecccCCcccCccccHHHcCCC
Confidence 348999999999999999999999984 2 67899999999999984
No 89
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=91.31 E-value=0.15 Score=40.30 Aligned_cols=85 Identities=20% Similarity=0.229 Sum_probs=64.5
Q ss_pred ehhhhhhhhhhhhhccchhhccc---cCCCCccceecc-----ccccccccchhhhccccccccccCCCceeeeEeecCC
Q psy9488 8 LEIIITYLTLLYDKRPRYHKGIT---KVPPKDQKLFNK-----DNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQEN 79 (114)
Q Consensus 8 ~~~i~t~~~~~~~~LK~iIeGIl---K~pP~dQrL~~k-----d~qlLdD~KTL~dcG~tsqtAkaQ~PA~vGLA~r~~~ 79 (114)
|++=|+.-++.++-+|+|.|-+- ..+++|=.||.. .+.-|++++||..||+.+..+-.+.|-.+-+.+.--|
T Consensus 15 ~~~~f~~~~~v~~~~~~i~e~~~~~~~~~~~~y~l~~~~~~~~~~~Wl~~~~~l~~y~~~~~~~l~~~~~~~~~~V~l~d 94 (371)
T 3ivf_A 15 KTMQFEPSTMVYDACRMIRERIPEALAGPPNDFGLFLSDDDPKKGIWLEAGKALDYYMLRNGDTMEYRKKQRPLKIRMLD 94 (371)
T ss_dssp EEEEECTTCBHHHHHHHHHTTCGGGGSSCGGGEEEEECCSSGGGCEECCTTSBGGGGTCCTTCEEEEEECEEEEEEECTT
T ss_pred EEEEECCCCCHHHHHHHHHHhcccccCCCHHHCeEeccCCCCCcCEeccCCCCHHHhCCCCCceeeccCceeEEEEECcC
Confidence 45555555677888888888775 456778789952 3566899999999999888777777777777777768
Q ss_pred CcccceeeecCCC
Q psy9488 80 GEFEPLELTPYSS 92 (114)
Q Consensus 80 ~~FE~L~I~P~Ss 92 (114)
|..+.+.|.+-++
T Consensus 95 g~~~~~~vd~~tt 107 (371)
T 3ivf_A 95 GTVKTIMVDDSKT 107 (371)
T ss_dssp SCEEEEEEETTSB
T ss_pred CCEEEEEECCCCC
Confidence 8899998886543
No 90
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=90.73 E-value=0.059 Score=36.09 Aligned_cols=53 Identities=8% Similarity=0.033 Sum_probs=42.3
Q ss_pred hhhhhccchhhccccCCCCccceeccccccccccchhhhccccccccccCCCceeeeEeec
Q psy9488 17 LLYDKRPRYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQ 77 (114)
Q Consensus 17 ~~~~~LK~iIeGIlK~pP~dQrL~~kd~qlLdD~KTL~dcG~tsqtAkaQ~PA~vGLA~r~ 77 (114)
+++.+|+..+..-..+||+.|||+ -++.-|++.+|+.|++. +.=.+|=+.++.
T Consensus 28 t~l~kl~~~y~~~~gi~~~~~rf~-FdG~~l~~~~Tp~dl~m-------edgD~Idv~~~~ 80 (94)
T 2io1_B 28 TPLSKLMKAYCERQGLSMRQIRFR-FDGQPINETDTPAQLEM-------EDEDTIDVFQQQ 80 (94)
T ss_dssp SCTHHHHHHHHHHHTCCGGGEEEE-ETTEECCTTCCTTTTTC-------CTTCEEEEEECC
T ss_pred CHHHHHHHHHHHHhCCCcccEEEE-ECCEEcCCCCCHHHcCC-------CCCCEEEEEEec
Confidence 667778888887788899999998 89999999999999999 444455555543
No 91
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=89.93 E-value=0.095 Score=32.95 Aligned_cols=43 Identities=7% Similarity=0.009 Sum_probs=35.4
Q ss_pred hhhhhccchhhccccCCCCccceeccccccccccchhhhccccc
Q psy9488 17 LLYDKRPRYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTS 60 (114)
Q Consensus 17 ~~~~~LK~iIeGIlK~pP~dQrL~~kd~qlLdD~KTL~dcG~ts 60 (114)
+.+.+|+.....-...+|..|||+ -+|.-|.+.+|.+++|...
T Consensus 22 t~l~kl~~~y~~~~gi~~~~~rf~-fdG~~l~~~~Tp~~l~med 64 (72)
T 1wm3_A 22 TPLSKLMKAYCERQGLSMRQIRFR-FDGQPINETDTPAQLEMED 64 (72)
T ss_dssp SCTHHHHHHHHHHHTCCTTTCEEE-ETTEECCTTCCTTTTTCCT
T ss_pred ChHHHHHHHHHHHhCCCcceEEEE-ECCEEcCCCCCHHHcCCCC
Confidence 556667777766677899999998 8999999999999999853
No 92
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=89.47 E-value=0.3 Score=32.56 Aligned_cols=53 Identities=8% Similarity=0.033 Sum_probs=41.2
Q ss_pred hhhhhccchhhccccCCCCccceeccccccccccchhhhccccccccccCCCceeeeEeec
Q psy9488 17 LLYDKRPRYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQ 77 (114)
Q Consensus 17 ~~~~~LK~iIeGIlK~pP~dQrL~~kd~qlLdD~KTL~dcG~tsqtAkaQ~PA~vGLA~r~ 77 (114)
+.+.+|+.....-..++|..+||+ -||+-|.+.+|.+++|. +.=.+|=+.++.
T Consensus 26 t~l~kl~~~y~~~~gi~~~~~rf~-FdG~~l~~~~Tp~dl~m-------edgD~Idv~~~q 78 (91)
T 2io0_B 26 TPLSKLMKAYCERQGLSMRQIRFR-FDGQPINETDTPAQLEM-------EDEDTIDVFQQQ 78 (91)
T ss_dssp SCTHHHHHHHHHHTTCCSTTEEEE-ETTEECCTTCCTTTTTC-------CTTEEEEEEECC
T ss_pred ChHHHHHHHHHHHhCCCcccEEEE-ECCEEcCCCCCHHHcCC-------CCCCEEEEEEec
Confidence 566777777777777899999988 89999999999999999 444455555543
No 93
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=89.41 E-value=0.21 Score=37.62 Aligned_cols=59 Identities=19% Similarity=0.341 Sum_probs=43.9
Q ss_pred hhhhhccchhhccccCCCC-ccceeccc----cccccc-cchhhhccccccccccCCCceeeeEeecCCCcc
Q psy9488 17 LLYDKRPRYHKGITKVPPK-DQKLFNKD----NREMEE-GNLLQEYGLTSAVAKAQSPALVGLAFRQENGEF 82 (114)
Q Consensus 17 ~~~~~LK~iIeGIlK~pP~-dQrL~~kd----~qlLdD-~KTL~dcG~tsqtAkaQ~PA~vGLA~r~~~~~F 82 (114)
.|+.+|++.+-.+++++++ +-|||+.. -.+|+| .+||.|+++ +.-..|=+=+|..|+.+
T Consensus 150 ~ti~~l~~~~~~~~~i~~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l-------~~~Q~illE~r~~dg~W 214 (217)
T 4a3p_A 150 DTIDTIEKEIRKIFSIPDEKETRLWNKYMSNTFEPLNKPDSTIQDAGL-------YQGQVLVIEQKNEDGTW 214 (217)
T ss_dssp SBHHHHHHHHHHHTTCCTTSCEEEEEEEETTEEEECCCTTSBHHHHTC-------CTTCEEEEEECCCC-CC
T ss_pred chHHHHHHHHHHHhCCCCCCceEEEEecCCCCeeecCCCCCCHHHhCC-------CCCCEEEEEEecCCCCC
Confidence 7888999999999999997 79999742 345666 689999999 44445556677555554
No 94
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=88.79 E-value=0.12 Score=33.26 Aligned_cols=43 Identities=14% Similarity=0.111 Sum_probs=36.1
Q ss_pred hhhhhccchhhccccCCCCccceeccccccccccchhhhccccc
Q psy9488 17 LLYDKRPRYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTS 60 (114)
Q Consensus 17 ~~~~~LK~iIeGIlK~pP~dQrL~~kd~qlLdD~KTL~dcG~ts 60 (114)
+.+.+|+.....-...+++.|||+ -+|.-|.+.+|..++|...
T Consensus 29 t~l~kl~~~y~~~~gi~~~~~rf~-fdG~~l~~~~Tp~~l~med 71 (79)
T 3a4r_A 29 SPLKVLMSHYEEAMGLSGHKLSFF-FDGTKLSGKELPADLGLES 71 (79)
T ss_dssp SCHHHHHHHHHHHHTCTTCCCEEE-ETTEECCSCCCHHHHTCCT
T ss_pred ChHHHHHHHHHHHhCCCcccEEEE-ECCEEcCCCCCHHHcCCCC
Confidence 566677777777777899999998 8999999999999999853
No 95
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=88.62 E-value=0.16 Score=33.09 Aligned_cols=47 Identities=4% Similarity=-0.130 Sum_probs=36.6
Q ss_pred hhhhhhhhccchhhccccCCCCccceecccc---cc-ccccchhhhccccc
Q psy9488 14 YLTLLYDKRPRYHKGITKVPPKDQKLFNKDN---RE-MEEGNLLQEYGLTS 60 (114)
Q Consensus 14 ~~~~~~~~LK~iIeGIlK~pP~dQrL~~kd~---ql-LdD~KTL~dcG~ts 60 (114)
+...++.+|+..|...+..+++.|.+|.-.+ .+ +..++||+++|+.+
T Consensus 21 ~~~~t~~~L~~~I~~~~~i~~~~~~l~~~~~p~~~l~~~~~~~l~~lgl~h 71 (80)
T 2pjh_A 21 TKRETAATFLKKVAKEFGFQNNGFSVYINRNKTGEITASSSKSLHLLKIKH 71 (80)
T ss_dssp CSSCCHHHHHHHHHHHTCCCTTTCCCCCSCCGGGGSSSCCCCTTTTTCCCT
T ss_pred CCcChHHHHHHHHHHHcCCCCCcceEEecCCCCCcccCCCCCCHHHcCCCC
Confidence 4557899999999999999999999984322 22 34788999999853
No 96
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=87.92 E-value=0.47 Score=36.04 Aligned_cols=59 Identities=17% Similarity=0.341 Sum_probs=43.8
Q ss_pred hhhhhccchhhccccCCCC-ccceeccc----cccccc-cchhhhccccccccccCCCceeeeEeecCCCcc
Q psy9488 17 LLYDKRPRYHKGITKVPPK-DQKLFNKD----NREMEE-GNLLQEYGLTSAVAKAQSPALVGLAFRQENGEF 82 (114)
Q Consensus 17 ~~~~~LK~iIeGIlK~pP~-dQrL~~kd----~qlLdD-~KTL~dcG~tsqtAkaQ~PA~vGLA~r~~~~~F 82 (114)
.|+.+|++.+-.+++.+++ +-|||+.. -.+|+| .+||.|+++ +.--.|=+=.|..|+.+
T Consensus 162 ~ti~~l~~~~~~~~~i~~~~~~RLW~~~~~~~~~~L~~~~~tl~d~~L-------~~~Q~illE~r~~dg~W 226 (231)
T 3jyu_A 162 DTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNTIQDAGL-------YQGQVLVIEPQNEDGTW 226 (231)
T ss_dssp CBHHHHHHHHHHHTTCCTTSCEEEEECSSSSSCEECCCTTSBTTTTTC-------CTTEEEEEEECCTTSCC
T ss_pred CcHHHHHHHHHHHhCCCCCCeEEEEEecCCCCHhhhcCCCCCHHHhCC-------CCCCEEEEEEecCCCCC
Confidence 6899999999999999997 79999753 335655 699999999 44444555666555554
No 97
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=86.74 E-value=0.25 Score=33.80 Aligned_cols=42 Identities=7% Similarity=0.006 Sum_probs=36.3
Q ss_pred hhhhhccchhhccccCCCCccceeccccccccccchhhhcccc
Q psy9488 17 LLYDKRPRYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLT 59 (114)
Q Consensus 17 ~~~~~LK~iIeGIlK~pP~dQrL~~kd~qlLdD~KTL~dcG~t 59 (114)
+.+.+|+.....-..++|..+||+ -++.-|.+.+|..++|..
T Consensus 45 t~l~kL~~~y~ek~gi~~~~~rf~-FdG~~l~~~~Tp~dl~me 86 (104)
T 1wz0_A 45 TPLSKLMKAYCERQGLSMRQIRFR-FDGQPINETDTPAQLEME 86 (104)
T ss_dssp SCHHHHHHHHHHHHTCCTTTSCEE-SSSSBCCTTSCTTTTTCC
T ss_pred ChHHHHHHHHHHHhCCCcceEEEE-ECCEEcCCCCCHHHcCCC
Confidence 667777777777778899999998 899999999999999984
No 98
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=84.22 E-value=0.53 Score=31.14 Aligned_cols=42 Identities=7% Similarity=0.006 Sum_probs=35.4
Q ss_pred hhhhhccchhhccccCCCCccceeccccccccccchhhhcccc
Q psy9488 17 LLYDKRPRYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLT 59 (114)
Q Consensus 17 ~~~~~LK~iIeGIlK~pP~dQrL~~kd~qlLdD~KTL~dcG~t 59 (114)
+.+.+|+.....-...+++.+||+ -++.-|.+.+|..++|..
T Consensus 38 t~l~kl~~~y~~~~gi~~~~~rf~-fdG~~l~~~~Tp~dl~me 79 (93)
T 2d07_B 38 TPLSKLMKAYCERQGLSMRQIRFR-FDGQPINETDTPAQLEME 79 (93)
T ss_dssp SCHHHHHHHHHHHHTCCGGGEEEE-ETTEECCTTCCTTTTTCC
T ss_pred CHHHHHHHHHHHHhCCCccceEEE-ECCEEcCCCCCHHHcCCC
Confidence 556677777777777899999988 899999999999999984
No 99
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=83.57 E-value=0.62 Score=32.31 Aligned_cols=42 Identities=12% Similarity=0.118 Sum_probs=35.8
Q ss_pred hhhhhccchhhccccCCCCccceeccccccccccchhhhcccc
Q psy9488 17 LLYDKRPRYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLT 59 (114)
Q Consensus 17 ~~~~~LK~iIeGIlK~pP~dQrL~~kd~qlLdD~KTL~dcG~t 59 (114)
+.+.+|+.....-..+++..|||+ -+++-|.+.+|..++|..
T Consensus 47 t~l~kL~~ay~ek~gi~~~~~rfi-FdG~~L~~~~Tp~dl~mE 88 (110)
T 2k8h_A 47 TALKKLIDTYCKKQGISRNSVRFL-FDGTPIDETKTPEELGME 88 (110)
T ss_dssp SSHHHHHHHHHHHHTCCSSSCEEE-SSSCBCCSSSHHHHHHCS
T ss_pred ChHHHHHHHHHHHhCCCcccEEEE-ECCEEcCCCCCHHHcCCC
Confidence 566777777777777899999998 899999999999999984
No 100
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=82.19 E-value=0.54 Score=31.47 Aligned_cols=45 Identities=11% Similarity=0.068 Sum_probs=29.9
Q ss_pred hhhhhccchhhccccCCCCccc-eec---cccccccccchhhhcccccc
Q psy9488 17 LLYDKRPRYHKGITKVPPKDQK-LFN---KDNREMEEGNLLQEYGLTSA 61 (114)
Q Consensus 17 ~~~~~LK~iIeGIlK~pP~dQr-L~~---kd~qlLdD~KTL~dcG~tsq 61 (114)
.+|.+|+++|-..++.+...-. -|. .++.+|.+.++|+|||+++.
T Consensus 27 ~tvK~Li~~l~ea~~l~~~~~~~~~irv~NK~~~L~~~~~L~d~~ItnG 75 (81)
T 2bps_A 27 HPVKKVIDIAWQAQSVSMPPREGHWIRVVNKDKVFSGECKLSDCGITNG 75 (81)
T ss_dssp SBTTHHHHHHHHHSCCCSCCCTTCEEEEGGGTEEEETTSBTGGGTCCTT
T ss_pred hhHHHHHHHHHHHhCCCcCCCCCCEEEEecCCEEEcCCCEEeeCCcCCC
Confidence 4566666777666665542111 121 27889999999999999753
No 101
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=76.60 E-value=1.3 Score=30.53 Aligned_cols=42 Identities=2% Similarity=-0.010 Sum_probs=34.5
Q ss_pred hhhhhccchhhccccCCCCccceeccccccccccchhhhcccc
Q psy9488 17 LLYDKRPRYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLT 59 (114)
Q Consensus 17 ~~~~~LK~iIeGIlK~pP~dQrL~~kd~qlLdD~KTL~dcG~t 59 (114)
+.+.+|+.....-..+++..+||+ -++.-|.+.+|..++|..
T Consensus 51 t~l~kL~~ay~ek~gi~~~~~rF~-FdG~rl~~~~Tp~dl~me 92 (106)
T 2eke_C 51 TPLRRLMEAFAKRQGKEMDSLRFL-YDGIRIQADQTPEDLDME 92 (106)
T ss_dssp SCTHHHHHHHHHHHTCCGGGEEEE-ETTEECCTTCCTTTTTCC
T ss_pred CHHHHHHHHHHHHhCCCcccEEEE-ECCeEcCCCCCHHHcCCC
Confidence 556666666666667889999988 899999999999999984
No 102
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=69.95 E-value=1.8 Score=29.66 Aligned_cols=49 Identities=16% Similarity=0.115 Sum_probs=34.8
Q ss_pred hhhhhhhccchhhccccCCCCccceecccc-c-cccccchhhhccccccccccCCC
Q psy9488 15 LTLLYDKRPRYHKGITKVPPKDQKLFNKDN-R-EMEEGNLLQEYGLTSAVAKAQSP 68 (114)
Q Consensus 15 ~~~~~~~LK~iIeGIlK~pP~dQrL~~kd~-q-lLdD~KTL~dcG~tsqtAkaQ~P 68 (114)
...++..+|..|+.=..+||++|||+ -.+ + .|+.+ +.-.+|...++ ..|
T Consensus 32 ~~etv~~~ke~V~eqTgIp~~~Q~LL-~eg~~l~l~p~--~~a~~~p~Tt~--~~P 82 (94)
T 4efo_A 32 SYNTATIFHELVYKQTKIISSNQELI-YEGRRLVLEPG--RLAQHFPKTTE--ENP 82 (94)
T ss_dssp TTCBHHHHHHHHHHHHCCCGGGEEEE-ETTEEECCCTT--CBGGGSCCCBT--TBC
T ss_pred cchHHHHHHHHHHHHhCCCHHHHHHH-hCCCccccCCC--CccccCCCCCC--CCC
Confidence 34689999999999999999999998 544 3 34444 34455665555 456
No 103
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=59.42 E-value=1.9 Score=30.51 Aligned_cols=26 Identities=8% Similarity=0.018 Sum_probs=24.2
Q ss_pred hhhhhccchhhccccCCCCccceecc
Q psy9488 17 LLYDKRPRYHKGITKVPPKDQKLFNK 42 (114)
Q Consensus 17 ~~~~~LK~iIeGIlK~pP~dQrL~~k 42 (114)
.++.++|.+|...+.+|++.||||..
T Consensus 66 ~~~~~~~~~va~~lg~~~~~~RlW~~ 91 (130)
T 2kvr_A 66 SSLAEFVQSLSQTMGFPQDQIRLWPM 91 (130)
T ss_dssp SBHHHHHHHHHHHHCCCGGGCEEEEC
T ss_pred CcHHHHHHHHHHHhCCCcccEEEEEe
Confidence 78999999999999999999999953
No 104
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=55.37 E-value=9.6 Score=27.30 Aligned_cols=25 Identities=20% Similarity=0.310 Sum_probs=19.9
Q ss_pred ccccccchhhhccccccccccCCCceeeeEee
Q psy9488 45 REMEEGNLLQEYGLTSAVAKAQSPALVGLAFR 76 (114)
Q Consensus 45 qlLdD~KTL~dcG~tsqtAkaQ~PA~vGLA~r 76 (114)
..||+++||.|+|+ +.-.+|-|+++
T Consensus 98 ~WLD~srtL~EQGI-------~e~~tllLRrK 122 (128)
T 2kc2_A 98 NWLDHGRTLREQGV-------EEHETLLLRRK 122 (128)
T ss_dssp EEECSSSCHHHHTC-------CTTSEEEEEES
T ss_pred CcccCCCcHHHcCC-------CCCCEEEEEEE
Confidence 57999999999999 44466777766
No 105
>2juo_A GA-binding protein alpha chain; OST, ubiquitin, transcription factor, ensemble, DNA-binding, nucleus, transcription regulation; NMR {Mus musculus}
Probab=48.18 E-value=12 Score=25.96 Aligned_cols=71 Identities=13% Similarity=0.156 Sum_probs=49.8
Q ss_pred hhhhhccchhhccccCCCCccceeccccccccccchhhhccccccccccCCCceeeeEeec--CCCcccceeeecCCCCC
Q psy9488 17 LLYDKRPRYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQ--ENGEFEPLELTPYSSPP 94 (114)
Q Consensus 17 ~~~~~LK~iIeGIlK~pP~dQrL~~kd~qlLdD~KTL~dcG~tsqtAkaQ~PA~vGLA~r~--~~~~FE~L~I~P~SsPP 94 (114)
...-.||.++|.=+...=.+=..|+.|-+ |+..|+|.|+|+ |--..|.+-+.- -.+..+.++|.
T Consensus 13 epL~~Lk~LLe~Rl~i~L~~y~f~LQd~~-L~~~k~LvdQcV-------qgeGlVQinvqik~~~~~~~RiNIv------ 78 (89)
T 2juo_A 13 EPIGNLKKLLEPRLQCSLDAHEICLQDIQ-LDPDRSLFDQGV-------KTDGTVQLSVQVISYQGMEPKLNIL------ 78 (89)
T ss_dssp SBGGGHHHHSHHHHCSCCSSCEEEETTEE-CCTTSBTTTSSC-------CCCSEEEEEEEEECCTTCCCEEEEE------
T ss_pred CcHHHHHHHHHHHhcCCcccCeEEeeccc-cCCCccHHHhhc-------ccccEEEEEEEEEecCCCCcceEEE------
Confidence 44556788888888888888888877888 999999999998 655555555432 12224455554
Q ss_pred CCcccccccc
Q psy9488 95 DLPYVMKASE 104 (114)
Q Consensus 95 ~LPdvMk~q~ 104 (114)
||.||.+
T Consensus 79 ---DVlKP~e 85 (89)
T 2juo_A 79 ---EIVKTAE 85 (89)
T ss_dssp ---EEEETTS
T ss_pred ---EEecccc
Confidence 6777765
No 106
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=45.72 E-value=9.6 Score=24.14 Aligned_cols=44 Identities=16% Similarity=0.152 Sum_probs=25.4
Q ss_pred hhhhhccchhhccccCCCCccceecc-ccccc---cccchhhhcccccc
Q psy9488 17 LLYDKRPRYHKGITKVPPKDQKLFNK-DNREM---EEGNLLQEYGLTSA 61 (114)
Q Consensus 17 ~~~~~LK~iIeGIlK~pP~dQrL~~k-d~qlL---dD~KTL~dcG~tsq 61 (114)
.++.+|...|+. ...++..-.|.-- -...+ |.++||.|+|+..+
T Consensus 28 ~tl~~v~~fv~~-~~~~~~~f~L~t~fPrk~l~~~d~~~TL~e~gL~p~ 75 (84)
T 3qx1_A 28 NKLQIVFDFVAS-KGFPWDEYKLLSTFPRRDVTQLDPNKSLLEVKLFPQ 75 (84)
T ss_dssp SBHHHHHHHHHH-TTCCTTTEEEECSSSCCBGGGSCTTSBTTTTTCCSE
T ss_pred CCHHHHHHHHHH-cCCCCCCeEEEeCCCCCCCcCCCCCCCHHHCCCCCC
Confidence 455666666665 2234555555521 12223 67899999999543
No 107
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=44.92 E-value=18 Score=27.48 Aligned_cols=42 Identities=2% Similarity=-0.010 Sum_probs=33.3
Q ss_pred hhhhhccchhhccccCCCCccceeccccccccccchhhhcccc
Q psy9488 17 LLYDKRPRYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLT 59 (114)
Q Consensus 17 ~~~~~LK~iIeGIlK~pP~dQrL~~kd~qlLdD~KTL~dcG~t 59 (114)
+.+.+|++....-..+++..+|++ -||+-+.+..|..+.|..
T Consensus 49 t~l~kL~~ay~er~Gi~~~~~RF~-FdG~rI~~~~TP~dL~ME 90 (200)
T 3pge_A 49 TPLRRLMEAFAKRQGKEMDSLRFL-YDGIRIQADQTPEDLDME 90 (200)
T ss_dssp SCTHHHHHHHHHHHSSCGGGEEEE-ETTEECCTTCCTTTTTCC
T ss_pred CHHHHHHHHHHHHhCCChhhEEEE-ECCEEcCCCCCHHHcCCC
Confidence 455566655555556689999988 899999999999999985
No 108
>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}
Probab=41.75 E-value=11 Score=25.80 Aligned_cols=47 Identities=19% Similarity=0.236 Sum_probs=20.2
Q ss_pred chhhhccccccccccCCCceeeeEeecCCCc-ccceeeecCCCCCCCc
Q psy9488 51 NLLQEYGLTSAVAKAQSPALVGLAFRQENGE-FEPLELTPYSSPPDLP 97 (114)
Q Consensus 51 KTL~dcG~tsqtAkaQ~PA~vGLA~r~~~~~-FE~L~I~P~SsPP~LP 97 (114)
+.|.++||+.-......+...++.+++.... -.+.-..||+.||.+-
T Consensus 166 ~~l~~~Gf~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~P~~~~~~~~ 213 (219)
T 3dh0_A 166 LILEDAGIRVGRVVEVGKYCFGVYAMIVKQEEENPLMNVPFKIPPGEG 213 (219)
T ss_dssp HHHHHTTCEEEEEEEETTTEEEEEEECC--------------------
T ss_pred HHHHHCCCEEEEEEeeCCceEEEEEEeccccccCcCCccceecCCCCC
Confidence 4578899986665666677777777763333 3455567999999763
No 109
>3vwc_A Serine protease inhibitor 1; sulphur SAD phasing, beta trefoil, serine proteas hydrolase inhibitor; 1.50A {Coprinopsis cinerea} PDB: 3n0k_A
Probab=37.29 E-value=21 Score=26.40 Aligned_cols=28 Identities=21% Similarity=0.459 Sum_probs=23.6
Q ss_pred eeEeecCCCcccceeeecCCCCCCCccc
Q psy9488 72 GLAFRQENGEFEPLELTPYSSPPDLPYV 99 (114)
Q Consensus 72 GLA~r~~~~~FE~L~I~P~SsPP~LPdv 99 (114)
||++..++.+++++.+.|++.+|-.|--
T Consensus 107 GWv~P~~~e~~~QV~v~pL~~~ps~pP~ 134 (149)
T 3vwc_A 107 GWVVPADAEELQQVEVRPLIAAPSYPPR 134 (149)
T ss_dssp EEECCTTCCTTCBCEEECCCCBSSSSCB
T ss_pred ceEccCCCCCceeEEEEecccCCCCCCC
Confidence 8888875678999999999988888754
No 110
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=35.88 E-value=11 Score=26.39 Aligned_cols=42 Identities=12% Similarity=0.169 Sum_probs=32.0
Q ss_pred hhhhhccchhhccccCCCCccceeccccccccccchhhhcccc
Q psy9488 17 LLYDKRPRYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLT 59 (114)
Q Consensus 17 ~~~~~LK~iIeGIlK~pP~dQrL~~kd~qlLdD~KTL~dcG~t 59 (114)
+.+.+|+.....-..+++..+|++ -|++-|.+..|..+.|..
T Consensus 61 t~L~KLm~aY~er~Gl~~~~irFl-FDG~rI~~~~TP~dL~ME 102 (115)
T 3kyd_D 61 THLKKLKESYCQRQGVPMNSLRFL-FEGQRIADNHTPKELGME 102 (115)
T ss_dssp SCTHHHHHHHHHHHTCCTTSEEEE-ETTEECCTTCCTTTTTCC
T ss_pred ChHHHHHHHHHHHhCCChhhEEEE-ECCeECCCCCCHHHcCCC
Confidence 444555555555556789999988 899999999999999884
No 111
>1af8_A Actinorhodin polyketide synthase acyl carrier Pro; acyl carrier protein, solution STR antibiotic biosynthesis; NMR {Streptomyces coelicolor} SCOP: a.28.1.1 PDB: 2af8_A 2k0x_A* 2k0y_A 2kg6_A* 2kg8_A* 2kg9_A* 2kga_A* 2kgc_A* 2kgd_A* 2kge_A*
Probab=33.79 E-value=17 Score=22.11 Aligned_cols=40 Identities=13% Similarity=-0.049 Sum_probs=25.6
Q ss_pred hhhhccchhhccccCCCCccceeccccccccccchhhhcccccccc
Q psy9488 18 LYDKRPRYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVA 63 (114)
Q Consensus 18 ~~~~LK~iIeGIlK~pP~dQrL~~kd~qlLdD~KTL~dcG~tsqtA 63 (114)
+.++++++|..++..+++.. + + -++....|.|.|+.|=.+
T Consensus 6 ~~~~l~~il~~~l~~~~~~~-~---~--~i~~~~~l~dlG~DSL~~ 45 (86)
T 1af8_A 6 TTDDLRRALVECAGETDGTD-L---S--GDFLDLRFEDIGYDSLAL 45 (86)
T ss_dssp CHHHHHHHHHTTCCCCSCCC-T---T--TCSSTTSTTTTTCCTTTH
T ss_pred HHHHHHHHHHHHhCCCcccc-c---c--cCCCCCChhhcCCCHHHH
Confidence 56788999999998876521 0 0 022344578889866554
No 112
>1vku_A Acyl carrier protein; TM0175, structural genomics, JCSG, Pro structure initiative, PSI; 2.00A {Thermotoga maritima} SCOP: a.28.1.1
Probab=33.77 E-value=18 Score=23.78 Aligned_cols=37 Identities=19% Similarity=0.127 Sum_probs=26.9
Q ss_pred hhhhhccchhhccccCCCCccceeccccccccccchhhhcccccccc
Q psy9488 17 LLYDKRPRYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVA 63 (114)
Q Consensus 17 ~~~~~LK~iIeGIlK~pP~dQrL~~kd~qlLdD~KTL~dcG~tsqtA 63 (114)
.+.+.++.+|..++.+++++ ++....|.|.|+.|=.+
T Consensus 17 ~i~~~l~~ila~~l~v~~~~----------I~~d~~L~dLGlDSL~~ 53 (100)
T 1vku_A 17 KLIAKFVEIASEKMGKDLET----------VDEENTFKELGFDSIDV 53 (100)
T ss_dssp HHHHHHHHHHHHTTCCCCCS----------CCTTSBTTTTTCCHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHH----------CCCCCCHHHcCCchHHH
Confidence 56788999999999887653 34455678888866544
No 113
>2ava_A ACP I, acyl carrier protein I, chloroplast; four-helix-bundle, biosynthetic protein; NMR {Spinacia oleracea} PDB: 2fva_A* 2fve_A 2fvf_A* 2xz0_D* 2xz1_C*
Probab=33.20 E-value=16 Score=21.99 Aligned_cols=38 Identities=13% Similarity=0.009 Sum_probs=24.8
Q ss_pred hhhhhccchhhccccCCCCccceeccccccccccchhhhcccccccc
Q psy9488 17 LLYDKRPRYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVA 63 (114)
Q Consensus 17 ~~~~~LK~iIeGIlK~pP~dQrL~~kd~qlLdD~KTL~dcG~tsqtA 63 (114)
.+.+.++++|..++.+++++ . ++....|.|.|+.|=.+
T Consensus 4 ~i~~~l~~i~~~~l~~~~~~-~--------i~~~~~l~dlG~DSl~~ 41 (82)
T 2ava_A 4 ETIDKVSDIVKEKLALGADV-V--------VTADSEFSKLGADSLDT 41 (82)
T ss_dssp HHHHHHHHHHHHHTTCSSSS-C--------CCSSCCSCCCTTCCSCH
T ss_pred HHHHHHHHHHHHHhCCCccc-c--------cCCCCchhhcCCCHHHH
Confidence 35677888899888877651 1 23345567888866544
No 114
>2l3v_A ACP, acyl carrier protein; structural genomi seattle structural genomics center for infectious disease, lipid binding protein; NMR {Brucella melitensis}
Probab=31.69 E-value=18 Score=21.39 Aligned_cols=36 Identities=14% Similarity=0.143 Sum_probs=24.8
Q ss_pred hhhhccchhhccccCCCCccceeccccccccccchh-hhcccccccc
Q psy9488 18 LYDKRPRYHKGITKVPPKDQKLFNKDNREMEEGNLL-QEYGLTSAVA 63 (114)
Q Consensus 18 ~~~~LK~iIeGIlK~pP~dQrL~~kd~qlLdD~KTL-~dcG~tsqtA 63 (114)
+...+++++..++..++++ ++....| .+.|+.|=.+
T Consensus 5 i~~~l~~~~~~~l~~~~~~----------i~~~~~l~~~lG~DSl~~ 41 (79)
T 2l3v_A 5 TAERVKKIVVEHLGVDADK----------VTEGASFIDDLGADSLDT 41 (79)
T ss_dssp HHHHHHHHHHHHTCCCSTT----------CCTTCCHHHHTCCCSSSS
T ss_pred HHHHHHHHHHHHhCCCHhh----------CCCCCccccccCCCHHHH
Confidence 4567888888888877654 2344557 8888876554
No 115
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=31.38 E-value=9.7 Score=32.22 Aligned_cols=26 Identities=8% Similarity=0.018 Sum_probs=24.2
Q ss_pred hhhhhccchhhccccCCCCccceecc
Q psy9488 17 LLYDKRPRYHKGITKVPPKDQKLFNK 42 (114)
Q Consensus 17 ~~~~~LK~iIeGIlK~pP~dQrL~~k 42 (114)
.++.++|..|...+.+|++.||||..
T Consensus 46 ~~~~~l~~~va~~lg~~~~~~RlW~~ 71 (530)
T 2ylm_A 46 SSLAEFVQSLSQTMGFPQDQIRLWPM 71 (530)
T ss_dssp SBHHHHHHHHHHHHTSCGGGEEEEEE
T ss_pred CCHHHHHHHHHHHhCcCcccEEEEEE
Confidence 78999999999999999999999954
No 116
>1or5_A Acyl carrier protein; ACP, biosynthesis, frenolicin, holo, polyketide synthase, PKS, biosynthetic protein; NMR {Streptomyces roseofulvus} SCOP: a.28.1.1
Probab=30.56 E-value=16 Score=22.15 Aligned_cols=37 Identities=8% Similarity=0.030 Sum_probs=24.6
Q ss_pred hhhhccchhhccccCCCCccceecccccccc--ccchhhhcccccccc
Q psy9488 18 LYDKRPRYHKGITKVPPKDQKLFNKDNREME--EGNLLQEYGLTSAVA 63 (114)
Q Consensus 18 ~~~~LK~iIeGIlK~pP~dQrL~~kd~qlLd--D~KTL~dcG~tsqtA 63 (114)
+.+.++++|...+.+++.. -++ ....+.|.|+.|=.+
T Consensus 5 ~~~~l~~~l~~~l~~~~~~---------~i~~~~~~~~~dlG~DSL~~ 43 (83)
T 1or5_A 5 TVDDLKKLLAETAGEDDSV---------DLAGELDTPFVDLGYDSLAL 43 (83)
T ss_dssp CHHHHHHHHHHHSCCCSSC---------CGGGCSSSCHHHHSCCHHHH
T ss_pred HHHHHHHHHHHHhCCCccc---------ccCCCCCCcHHHhCCCHHHH
Confidence 4577888888888877651 122 344488999976554
No 117
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.11 E-value=16 Score=24.08 Aligned_cols=34 Identities=26% Similarity=0.326 Sum_probs=24.0
Q ss_pred CCCCccceeccccccccc----------cchhhhcccccccccc
Q psy9488 32 VPPKDQKLFNKDNREMEE----------GNLLQEYGLTSAVAKA 65 (114)
Q Consensus 32 ~pP~dQrL~~kd~qlLdD----------~KTL~dcG~tsqtAka 65 (114)
-+|+..+||.|-++.|+. -+.|.+.||.-..|+.
T Consensus 5 ~~p~~~~l~~~~~~~l~~~~~~~~~e~~i~~L~~MGF~~~~a~~ 48 (83)
T 2dai_A 5 SSGDAVELFKKANAMLDEDEDERVDEAALRQLTEMGFPENRATK 48 (83)
T ss_dssp CSCCCCCCCCCCSCCCCCCCSSSCCHHHHHHHHHHTCCHHHHHH
T ss_pred CCccHHHHHHHHHHHhcccccCCCCHHHHHHHHHcCCCHHHHHH
Confidence 578888999665554443 2679999998766654
No 118
>1f80_D Acyl carrier protein; transferase; HET: PN2; 2.30A {Bacillus subtilis} SCOP: a.28.1.1 PDB: 2x2b_A* 1hy8_A
Probab=29.79 E-value=20 Score=21.44 Aligned_cols=37 Identities=8% Similarity=0.032 Sum_probs=25.1
Q ss_pred hhhhhccchhhccccCCCCccceeccccccccccchh-hhcccccccc
Q psy9488 17 LLYDKRPRYHKGITKVPPKDQKLFNKDNREMEEGNLL-QEYGLTSAVA 63 (114)
Q Consensus 17 ~~~~~LK~iIeGIlK~pP~dQrL~~kd~qlLdD~KTL-~dcG~tsqtA 63 (114)
.+...++++|..++.+++++ ++....| .|.|+.|=.+
T Consensus 7 ~i~~~l~~~l~~~l~~~~~~----------i~~~~~l~~dlG~DSl~~ 44 (81)
T 1f80_D 7 DTLERVTKIIVDRLGVDEAD----------VKLEASFKEDLGADXLDV 44 (81)
T ss_dssp HHHHHHHHHHHHHSSCCSSC----------CCTTCBHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHh----------CCCccchHHHcCCcHHHH
Confidence 45677888888888876643 3344567 7888866544
No 119
>4a6q_A Histone deacetylase complex subunit SAP18; transcription, splicing, RNA metabolism, ubiquitin-like; HET: MSE; 1.50A {Mus musculus} PDB: 4a90_A* 2hde_A 4a8x_C
Probab=29.76 E-value=16 Score=26.94 Aligned_cols=12 Identities=17% Similarity=0.219 Sum_probs=10.8
Q ss_pred ccccchhhhccc
Q psy9488 47 MEEGNLLQEYGL 58 (114)
Q Consensus 47 LdD~KTL~dcG~ 58 (114)
-||+|||++++|
T Consensus 116 ~dd~kTL~~~rF 127 (143)
T 4a6q_A 116 TDDSMTLQSQKF 127 (143)
T ss_dssp TTTTCBTGGGTC
T ss_pred CcccccHHHCCC
Confidence 479999999998
No 120
>2cnr_A FAS, ACP, acyl carrier protein; polykdetide, phosphopantetheine, lipid transport; NMR {Streptomyces coelicolor} PDB: 2koo_A* 2kop_A* 2koq_A* 2kor_A* 2kos_A*
Probab=29.44 E-value=20 Score=21.26 Aligned_cols=37 Identities=11% Similarity=0.157 Sum_probs=24.4
Q ss_pred hhhhhccchhhccccCCCCccceeccccccccccchh-hhcccccccc
Q psy9488 17 LLYDKRPRYHKGITKVPPKDQKLFNKDNREMEEGNLL-QEYGLTSAVA 63 (114)
Q Consensus 17 ~~~~~LK~iIeGIlK~pP~dQrL~~kd~qlLdD~KTL-~dcG~tsqtA 63 (114)
.+...++++|..++.+++++ ++....| .+.|+.|=.+
T Consensus 7 ~i~~~l~~~i~~~l~~~~~~----------i~~~~~l~~dlG~DSl~~ 44 (82)
T 2cnr_A 7 EIVAGLAEIVNEIAGIPVED----------VKLDKSFTDDLDVDSLSM 44 (82)
T ss_dssp HHHHHHHHHHHHHSCCCTTT----------CCTTSBTTTTSCCCHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHH----------CCCCcchhhccCCChHHH
Confidence 45677888888888877643 2334456 6888866544
No 121
>2lol_A ACP, acyl carrier protein; lipid transport; NMR {Rickettsia prowazekii str}
Probab=29.12 E-value=19 Score=21.49 Aligned_cols=37 Identities=5% Similarity=-0.100 Sum_probs=25.2
Q ss_pred hhhhhccchhhccccCCCCccceeccccccccccchh-hhcccccccc
Q psy9488 17 LLYDKRPRYHKGITKVPPKDQKLFNKDNREMEEGNLL-QEYGLTSAVA 63 (114)
Q Consensus 17 ~~~~~LK~iIeGIlK~pP~dQrL~~kd~qlLdD~KTL-~dcG~tsqtA 63 (114)
.+...++++|..++.+++++ ++....| .+.|+.|=.+
T Consensus 6 ~i~~~l~~ii~~~l~~~~~~----------i~~~~~l~~dlG~DSl~~ 43 (81)
T 2lol_A 6 KIEQKVIEMVAEKLNKDKAI----------ITTDSRFIEDLKADSLDT 43 (81)
T ss_dssp HHHHHHHHHHHHHSCCCTTT----------CCTTCCHHHHTTCCHHHH
T ss_pred HHHHHHHHHHHHHHCCChhh----------CCCCCcHHHhcCCcHHHH
Confidence 45677888999888876543 2344457 6888876554
No 122
>1l0i_A Acyl carrier protein; acyl chain binding, fatty acid biosynt lipid transport; HET: PSR; 1.20A {Escherichia coli} SCOP: a.28.1.1 PDB: 3ny7_B* 2fhs_C 1l0h_A* 1acp_A 1t8k_A 2fac_A* 2fad_A* 2fae_A* 2k92_A 2k93_A 2k94_A 2l0q_A
Probab=28.05 E-value=17 Score=21.58 Aligned_cols=36 Identities=8% Similarity=0.131 Sum_probs=22.9
Q ss_pred hhhhccchhhccccCCCCccceeccccccccccchh-hhcccccccc
Q psy9488 18 LYDKRPRYHKGITKVPPKDQKLFNKDNREMEEGNLL-QEYGLTSAVA 63 (114)
Q Consensus 18 ~~~~LK~iIeGIlK~pP~dQrL~~kd~qlLdD~KTL-~dcG~tsqtA 63 (114)
+...+++++..++.+++++ ++....| .+.|+.|=.+
T Consensus 4 i~~~l~~~~~~~l~~~~~~----------i~~~~~l~~dlG~DSl~~ 40 (78)
T 1l0i_A 4 IEERVKKIIGEQLGVKQEE----------VTNNASFVEDLGADSLDT 40 (78)
T ss_dssp HHHHHHHHHHHHHTCCGGG----------CCTTCBTTTTSCCCHHHH
T ss_pred HHHHHHHHHHHHhCCCHHH----------CCCCcchhhhcCCCHHHH
Confidence 3567788888888776543 2334456 5888876544
No 123
>2ehs_A ACP, acyl carrier protein; lipid transport, structural genomics, NPPSFA, national proje protein structural and functional analyses; 1.30A {Aquifex aeolicus} PDB: 2eht_A
Probab=27.97 E-value=17 Score=21.20 Aligned_cols=35 Identities=9% Similarity=0.048 Sum_probs=22.3
Q ss_pred hhhccchhhccccCCCCccceeccccccccccchh-hhcccccccc
Q psy9488 19 YDKRPRYHKGITKVPPKDQKLFNKDNREMEEGNLL-QEYGLTSAVA 63 (114)
Q Consensus 19 ~~~LK~iIeGIlK~pP~dQrL~~kd~qlLdD~KTL-~dcG~tsqtA 63 (114)
...+++++..++.+++++ ++....| .+.|+.|=.+
T Consensus 3 ~~~l~~~~~~~l~~~~~~----------i~~~~~l~~~lG~DSl~~ 38 (77)
T 2ehs_A 3 EERVKEIIAEQLGVEKEK----------ITPEAKFVEDLGADSLDV 38 (77)
T ss_dssp HHHHHHHHHHHHCCCGGG----------CCTTCBTTTTTCCCHHHH
T ss_pred HHHHHHHHHHHhCCChhh----------CCCccchhhccCCCHHHH
Confidence 456777888888776543 3344556 7788766544
No 124
>1x3o_A Acyl carrier protein; structural genomics, riken structural genomics/proteomics in RSGI, NPPSFA; 1.50A {Thermus thermophilus}
Probab=27.88 E-value=17 Score=21.44 Aligned_cols=37 Identities=14% Similarity=0.186 Sum_probs=24.0
Q ss_pred hhhhhccchhhccccCCCCccceeccccccccccchh-hhcccccccc
Q psy9488 17 LLYDKRPRYHKGITKVPPKDQKLFNKDNREMEEGNLL-QEYGLTSAVA 63 (114)
Q Consensus 17 ~~~~~LK~iIeGIlK~pP~dQrL~~kd~qlLdD~KTL-~dcG~tsqtA 63 (114)
.+...+++++..++.+++++ ++....| .+.|+.|=.+
T Consensus 5 ~i~~~l~~~i~~~l~~~~~~----------i~~~~~l~~~lG~DSl~~ 42 (80)
T 1x3o_A 5 EIFEKVKAVIADKLQVEPEK----------VTLEARFIEDLGADSLDT 42 (80)
T ss_dssp HHHHHHHHHHHHHHTCCGGG----------CCTTCBTTTTTCCCHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHH----------CCCcCcHHhhcCccHHHH
Confidence 35567888888888876543 2334456 7788866544
No 125
>2kwl_A ACP, acyl carrier protein; structural genomics, seattle structura genomics center for infectious disease, ssgcid, lipid bindi protein; NMR {Borrelia burgdorferi}
Probab=27.35 E-value=18 Score=21.90 Aligned_cols=37 Identities=5% Similarity=0.037 Sum_probs=25.7
Q ss_pred hhhhhccchhhccccCCCCccceeccccccccccchh-hhcccccccc
Q psy9488 17 LLYDKRPRYHKGITKVPPKDQKLFNKDNREMEEGNLL-QEYGLTSAVA 63 (114)
Q Consensus 17 ~~~~~LK~iIeGIlK~pP~dQrL~~kd~qlLdD~KTL-~dcG~tsqtA 63 (114)
.+...++++|..++.+++++ ++....| .|.|+.|=.+
T Consensus 9 ~i~~~l~~~i~~~l~~~~~~----------i~~~~~l~~dlG~DSl~~ 46 (84)
T 2kwl_A 9 EIFSKVRSIISEQLDKKEDE----------ITTDSRFVEDLNADSLDI 46 (84)
T ss_dssp HHHHHHHHHHHHHHCCCGGG----------CCTTTHHHHTSSSCHHHH
T ss_pred HHHHHHHHHHHHHhCCCccc----------CCCCCchhhhcCCCHHHH
Confidence 46678888888888876543 3445567 7888876544
No 126
>2kjs_A Putative acyl carrier protein; alpha, ACP, PNS, structural genomics, PSI-2, protein structure initiative; HET: PNS; NMR {Geobacter metallireducens gs-15} PDB: 2lml_A* 2kwm_A*
Probab=26.57 E-value=17 Score=23.41 Aligned_cols=20 Identities=5% Similarity=-0.134 Sum_probs=16.1
Q ss_pred hhhhhccchhhccccCCCCc
Q psy9488 17 LLYDKRPRYHKGITKVPPKD 36 (114)
Q Consensus 17 ~~~~~LK~iIeGIlK~pP~d 36 (114)
.|.++|++|+..++++++..
T Consensus 2 ~tle~l~~I~~e~l~~d~~~ 21 (87)
T 2kjs_A 2 PTLDALTPIFRQVFDDDSIV 21 (87)
T ss_dssp CSHHHHHHHHHHHHTCSSCC
T ss_pred chHHHHHHHHHHHhCCCccc
Confidence 36789999999999977654
No 127
>4dxe_H ACP, acyl carrier protein; acyl-carrier-protein synthase, type II acid synthesis pathway; 2.51A {Staphylococcus aureus}
Probab=26.30 E-value=23 Score=23.31 Aligned_cols=37 Identities=16% Similarity=0.093 Sum_probs=26.3
Q ss_pred hhhhhccchhhccccCCCCccceeccccccccccchh-hhcccccccc
Q psy9488 17 LLYDKRPRYHKGITKVPPKDQKLFNKDNREMEEGNLL-QEYGLTSAVA 63 (114)
Q Consensus 17 ~~~~~LK~iIeGIlK~pP~dQrL~~kd~qlLdD~KTL-~dcG~tsqtA 63 (114)
.+.++++.+|..++.+++++ +.+..+| .|.|+.|=.+
T Consensus 26 ei~~~l~~iiae~l~~~~~~----------I~~d~~l~~dLGlDSL~~ 63 (101)
T 4dxe_H 26 ENFDKVKDIIVDRLGVDADK----------VTEDASFKDDLGADSLDI 63 (101)
T ss_dssp THHHHHHHHHHHTTCCCGGG----------CCTTCBTTTTSCCCHHHH
T ss_pred HHHHHHHHHHHHHHCcChhh----------CCCCCcchhhcCCCcHHH
Confidence 67889999999999887654 3344556 7788765443
No 128
>2liu_A CURA; holo state, transferase; NMR {Lyngbya majuscula} PDB: 2liw_A*
Probab=25.56 E-value=20 Score=21.95 Aligned_cols=37 Identities=14% Similarity=0.115 Sum_probs=26.2
Q ss_pred hhhhhccchhhccccCCCCccceeccccccccccchhhhcccccccc
Q psy9488 17 LLYDKRPRYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVA 63 (114)
Q Consensus 17 ~~~~~LK~iIeGIlK~pP~dQrL~~kd~qlLdD~KTL~dcG~tsqtA 63 (114)
.+...+++++..++..++++ ++....|.++|+.|=.+
T Consensus 21 ~~~~~l~~~~~~~l~~~~~~----------i~~~~~~~~lG~DSl~~ 57 (99)
T 2liu_A 21 EIKQVLKQQLAEALYTEESE----------IAEDQKFVDLGLDSIVG 57 (99)
T ss_dssp HHHHHHHHHHHHHTTSCGGG----------CCSSSCHHHHTCCHHHH
T ss_pred HHHHHHHHHHHHHHCcCHHH----------cCCCCCHHHhCccHHHH
Confidence 45667888888888876543 34456788999877554
No 129
>4go6_A HCF N-terminal chain 1; tandem fibronectin repeat, protein interaction, transcriptio protein binding; 2.70A {Homo sapiens}
Probab=24.63 E-value=46 Score=20.34 Aligned_cols=25 Identities=36% Similarity=0.476 Sum_probs=17.9
Q ss_pred ccccccCCCceeeeEeecCCCcccceeee
Q psy9488 60 SAVAKAQSPALVGLAFRQENGEFEPLELT 88 (114)
Q Consensus 60 sqtAkaQ~PA~vGLA~r~~~~~FE~L~I~ 88 (114)
|.|-||.+|+-|.|. |+ .+..|+++
T Consensus 2 ~Et~kP~~PsrVQLv-RA---st~sLEv~ 26 (45)
T 4go6_A 2 SETEKPPPPARVQLV-RA---NTNSLEVS 26 (45)
T ss_dssp -CCSCCCCCEEEEEE-EE---CSSCEEEE
T ss_pred CccccCCCcceEEEE-Ee---ccceEEEE
Confidence 567899999999986 76 44455554
No 130
>3ejb_A Acyl carrier protein; protein-protein complex, cytochrome P450 fold, carrier protein, 4-helix bundle, cytoplasm; HET: ZMP HTG HEM; 2.00A {Escherichia coli} SCOP: a.28.1.1 PDB: 3ejd_A* 3eje_A*
Probab=23.86 E-value=31 Score=22.18 Aligned_cols=37 Identities=8% Similarity=0.116 Sum_probs=24.5
Q ss_pred hhhhhccchhhccccCCCCccceeccccccccccchh-hhcccccccc
Q psy9488 17 LLYDKRPRYHKGITKVPPKDQKLFNKDNREMEEGNLL-QEYGLTSAVA 63 (114)
Q Consensus 17 ~~~~~LK~iIeGIlK~pP~dQrL~~kd~qlLdD~KTL-~dcG~tsqtA 63 (114)
.+.+.++.+|...+.+++++ +.+..+| .|.|+.|=.+
T Consensus 22 ~i~~~l~~iia~~l~~~~~~----------i~~d~~l~~dLGlDSL~~ 59 (97)
T 3ejb_A 22 TIEERVKKIIGEQLGVKQEE----------VTNNASFVEDLGADSLDT 59 (97)
T ss_dssp CHHHHHHHHHHHHSCCCTTT----------SCTTCBTTTTTCCCTTHH
T ss_pred HHHHHHHHHHHHHHCcCHHH----------CCCCCCchhhcCCCHHHH
Confidence 46678888888888876653 2344456 5888865443
No 131
>2kr5_A PKS, aflatoxin biosynthesis polyketide synthase; acyl carrrier protein, holo, phosphopantetheine, transport protein; HET: PNS; NMR {Aspergillus parasiticus}
Probab=23.78 E-value=20 Score=21.74 Aligned_cols=37 Identities=11% Similarity=0.153 Sum_probs=26.1
Q ss_pred hhhhhccchhhccccCCCCccceeccccccccccchhhhcccccccc
Q psy9488 17 LLYDKRPRYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVA 63 (114)
Q Consensus 17 ~~~~~LK~iIeGIlK~pP~dQrL~~kd~qlLdD~KTL~dcG~tsqtA 63 (114)
.+...+++++..++.+++++ ++....|.+.|+.|=.+
T Consensus 11 ~~~~~l~~~~~~~l~~~~~~----------i~~~~~~~~lG~DSL~~ 47 (89)
T 2kr5_A 11 EKLDAVMRVVSEESGIALEE----------LTDDSNFADMGIDSLSS 47 (89)
T ss_dssp HHHHHHHHHHHHHHCCCGGG----------CCTTCBHHHHTCCHHHH
T ss_pred HHHHHHHHHHHHHHCcCHHH----------CCCCCCHHHcCccHHHH
Confidence 45667888888888876543 34456688889877554
No 132
>2lte_A Specialized acyl carrier protein; APO protein, transferase; NMR {Pseudomonas aeruginosa}
Probab=29.34 E-value=17 Score=24.01 Aligned_cols=36 Identities=14% Similarity=0.229 Sum_probs=26.1
Q ss_pred hhhhccchhhccccCCCCccceeccccccccccchhhhcccccccc
Q psy9488 18 LYDKRPRYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVA 63 (114)
Q Consensus 18 ~~~~LK~iIeGIlK~pP~dQrL~~kd~qlLdD~KTL~dcG~tsqtA 63 (114)
+.+.++++|..++.+++++ ++....|.|.|+.|=.+
T Consensus 27 i~~~l~~ila~~l~i~~~~----------I~~d~~l~dLGlDSL~~ 62 (103)
T 2lte_A 27 MEDHLLTVLSVASGVPKEE----------ISRDSRMEDLAFDSLVV 62 (103)
Confidence 6778899999888876654 34455678899966554
No 133
>2qnw_A Acyl carrier protein; malaria, SGC, structural genomics CONS fatty acid biosynthesis, lipid synthesis, phosphopantethein transit peptide; 1.90A {Toxoplasma gondii}
Probab=23.08 E-value=23 Score=21.43 Aligned_cols=37 Identities=8% Similarity=0.020 Sum_probs=24.6
Q ss_pred hhhhhccchhhccccCCCCccceeccccccccccchh-hhcccccccc
Q psy9488 17 LLYDKRPRYHKGITKVPPKDQKLFNKDNREMEEGNLL-QEYGLTSAVA 63 (114)
Q Consensus 17 ~~~~~LK~iIeGIlK~pP~dQrL~~kd~qlLdD~KTL-~dcG~tsqtA 63 (114)
.+...++++|..++.+++++ ++....| .|.|+.|=.+
T Consensus 7 ~i~~~l~~ii~~~l~~~~~~----------i~~d~~l~~dlG~DSl~~ 44 (82)
T 2qnw_A 7 PLLERVKDVVADQLGVDRAR----------INPESNFIKDLDADSLDS 44 (82)
T ss_dssp HHHHHHHHHHHHHHCCCGGG----------CCTTCBHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHHHCCCHhh----------CCCccchhhccCCcHHHH
Confidence 45677888888888876543 3344556 6888866543
No 134
>1ik9_C DNA ligase IV; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens}
Probab=22.62 E-value=14 Score=21.23 Aligned_cols=13 Identities=15% Similarity=0.143 Sum_probs=11.5
Q ss_pred hhhhhccchhhcc
Q psy9488 17 LLYDKRPRYHKGI 29 (114)
Q Consensus 17 ~~~~~LK~iIeGI 29 (114)
.++++||+++++|
T Consensus 22 ~t~~eLk~il~~m 34 (37)
T 1ik9_C 22 TDLNQLKEVFSGI 34 (37)
T ss_dssp CCHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHc
Confidence 5799999999987
No 135
>2l22_A Mupirocin didomain acyl carrier protein; biosynthetic protein; NMR {Pseudomonas fluorescens}
Probab=22.32 E-value=29 Score=24.75 Aligned_cols=35 Identities=17% Similarity=0.189 Sum_probs=24.2
Q ss_pred hhhhhccchhhccccCCCCccceeccccccccccchhhhcccccc
Q psy9488 17 LLYDKRPRYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSA 61 (114)
Q Consensus 17 ~~~~~LK~iIeGIlK~pP~dQrL~~kd~qlLdD~KTL~dcG~tsq 61 (114)
.+...|+++|..++.+++++ ++....|.|+|+.|=
T Consensus 26 ~i~~~l~~~~a~~l~~~~~~----------i~~~~~f~~lG~DSl 60 (212)
T 2l22_A 26 ECAQFLRQSLAAMLYCEPGQ----------IRDGSRFLELGLDSV 60 (212)
T ss_dssp HHHHHHHHHHHHHTTCCTTS----------CCTTCBHHHHTCCHH
T ss_pred HHHHHHHHHHHHHHCcCHHH----------cCCCCCHHHhCCcHH
Confidence 56677889999999987654 334455667776553
No 136
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=22.27 E-value=1.1e+02 Score=26.73 Aligned_cols=43 Identities=14% Similarity=0.210 Sum_probs=35.6
Q ss_pred hhhhhhhccchhhccccCCCCccceeccccccccccchhhhcc
Q psy9488 15 LTLLYDKRPRYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYG 57 (114)
Q Consensus 15 ~~~~~~~LK~iIeGIlK~pP~dQrL~~kd~qlLdD~KTL~dcG 57 (114)
...++..++..|+.=+++++++|.|....+..|+.++....|-
T Consensus 330 ~~~tl~~l~~~i~~~T~i~~~~q~~~~~~~~~~~p~~~~~~~~ 372 (676)
T 3qa8_A 330 ENENLQNLKSWLQQDTGIPEEEQELLQASGLALNSAQPLTQYV 372 (676)
T ss_dssp TTCCHHHHHHHHHTTSCCCSTTCEEESSSSCCCCTTSCGGGSC
T ss_pred CCccHHHHHHHHHHHhCCCHHHHHHHhccCCCCCCCcchhhhe
Confidence 4467899999999999999999999866777787777766663
No 137
>2afd_A Protein ASL1650; twisted antiparallel helical bundle, acyl carrier protein FA structural genomics, PSI, protein structure initiative; NMR {Nostoc SP} PDB: 2afe_A
Probab=22.05 E-value=31 Score=20.51 Aligned_cols=37 Identities=19% Similarity=0.182 Sum_probs=25.2
Q ss_pred hhhhhccchhhccccCCCCccceeccccccccccchhhhcccccccc
Q psy9488 17 LLYDKRPRYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVA 63 (114)
Q Consensus 17 ~~~~~LK~iIeGIlK~pP~dQrL~~kd~qlLdD~KTL~dcG~tsqtA 63 (114)
.+...+.+++..++++++++ ++....|.++|+.|=.|
T Consensus 14 ~~~~~l~~~~~~~l~~~~~~----------i~~~~~~~~lG~DSl~~ 50 (88)
T 2afd_A 14 DIQSWLIDQFAQQLDVDPDD----------IDMEESFDNYDLNSSKA 50 (88)
T ss_dssp HHHHHHHHHHHHHHTSCGGG----------CCTTSCGGGTTCCSTHH
T ss_pred HHHHHHHHHHHHHHCcCHHH----------cCCCCCHHHcCccHHHH
Confidence 45566778888888876533 34455678889877655
No 138
>3gzm_A Acyl carrier protein; helix bundle, phosphopantetheine, fatty acid biosynthesis, L synthesis, transit peptide, biosynthetic protein; HET: PNS; 1.80A {Plasmodium falciparum} SCOP: a.28.1.0 PDB: 3gzl_A* 2fq0_A* 2fq2_A*
Probab=20.96 E-value=29 Score=20.92 Aligned_cols=37 Identities=11% Similarity=0.110 Sum_probs=24.8
Q ss_pred hhhhhccchhhccccCCCCccceeccccccccccchh-hhcccccccc
Q psy9488 17 LLYDKRPRYHKGITKVPPKDQKLFNKDNREMEEGNLL-QEYGLTSAVA 63 (114)
Q Consensus 17 ~~~~~LK~iIeGIlK~pP~dQrL~~kd~qlLdD~KTL-~dcG~tsqtA 63 (114)
.+.+.++++|...+.+++++ +....+| .|.|+.|=.+
T Consensus 5 ~i~~~l~~ii~~~l~~~~~~----------i~~d~~l~~dlg~DSl~~ 42 (81)
T 3gzm_A 5 STFDDIKKIISKQLSVEEDK----------IQMNSNFTKDLGADSLDL 42 (81)
T ss_dssp HHHHHHHHHHHHHHTCCGGG----------CCTTCBHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHHhCcCHHH----------CCCCCcchhhcCCCHHHH
Confidence 45678888888888876653 2334456 5888866443
No 139
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=20.11 E-value=48 Score=22.18 Aligned_cols=44 Identities=11% Similarity=0.090 Sum_probs=25.1
Q ss_pred hhhhhccchhhccccCCCCccceecc-ccccc---cccchhhhccccc
Q psy9488 17 LLYDKRPRYHKGITKVPPKDQKLFNK-DNREM---EEGNLLQEYGLTS 60 (114)
Q Consensus 17 ~~~~~LK~iIeGIlK~pP~dQrL~~k-d~qlL---dD~KTL~dcG~ts 60 (114)
.++.++...|+.-...+...-.|+-- -...+ |..+||.|+|+..
T Consensus 34 ~tl~~v~~fV~~~~~~~~~~f~L~t~fPrk~l~~~d~~~TL~elgL~p 81 (109)
T 2dzk_A 34 APLEEARQFAAQTVGNTYGNFSLATMFPRREFTREDYKRRLLDLELAP 81 (109)
T ss_dssp SBHHHHHHHHHHHHTTSSCSCEEECSSSCCBCCTTTTTSBTGGGTCSS
T ss_pred CCHHHHHHHHHhccCCCCCceEEEcCCCCcCCcccccCCCHHHCCCCC
Confidence 45666666666554334444445421 12223 4689999999953
Done!