Your job contains 1 sequence.
>psy9488
MDNLICQLEIIITYLTLLYDKRPRYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTS
AVAKAQSPALVGLAFRQENGEFEPLELTPYSSPPDLPYVMKASEQANGQENITS
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy9488
(114 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
MGI|MGI:1914923 - symbol:Tceb2 "transcription elongation ... 192 3.3e-15 1
RGD|621200 - symbol:Tceb2 "transcription elongation facto... 192 3.3e-15 1
UNIPROTKB|Q3SZ32 - symbol:TCEB2 "Transcription elongation... 188 8.8e-15 1
UNIPROTKB|B8ZZU8 - symbol:TCEB2 "Transcription elongation... 184 2.3e-14 1
UNIPROTKB|Q15370 - symbol:TCEB2 "Transcription elongation... 184 2.3e-14 1
WB|WBGene00001235 - symbol:elb-1 species:6239 "Caenorhabd... 89 0.00027 1
UNIPROTKB|G5ECR7 - symbol:elb-1 "RNA polymerase II transc... 89 0.00027 1
>MGI|MGI:1914923 [details] [associations]
symbol:Tceb2 "transcription elongation factor B (SIII),
polypeptide 2" species:10090 "Mus musculus" [GO:0001076 "RNA
polymerase II transcription factor binding transcription factor
activity" evidence=ISO] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005667 "transcription
factor complex" evidence=ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0030891 "VCB complex" evidence=ISO] [GO:0031462 "Cul2-RING
ubiquitin ligase complex" evidence=ISO] [GO:0031466 "Cul5-RING
ubiquitin ligase complex" evidence=ISO] [GO:0031625 "ubiquitin
protein ligase binding" evidence=ISO] [GO:0032403 "protein complex
binding" evidence=ISO] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISO]
InterPro:IPR000626 Pfam:PF00240 SMART:SM00213 UniPathway:UPA00143
MGI:MGI:1914923 GO:GO:0005634 GO:GO:0006355 GO:GO:0006351
GO:GO:0016567 InterPro:IPR019955 PROSITE:PS50053 CTD:6923
eggNOG:NOG316144 HOGENOM:HOG000293425 HOVERGEN:HBG008581 KO:K03873
OrthoDB:EOG4BG8X6 EMBL:AK019358 EMBL:AK002223 EMBL:AK002868
EMBL:AK003277 EMBL:AK008477 EMBL:AK008534 EMBL:AK012254
EMBL:AK019181 EMBL:AK019218 EMBL:BC051927 EMBL:BC056983
IPI:IPI00131224 RefSeq:NP_080581.1 UniGene:Mm.153758 PDB:2FNJ
PDBsum:2FNJ ProteinModelPortal:P62869 SMR:P62869 IntAct:P62869
MINT:MINT-2789207 STRING:P62869 PhosphoSite:P62869
REPRODUCTION-2DPAGE:P62869 PaxDb:P62869 PRIDE:P62869
Ensembl:ENSMUST00000069579 GeneID:67673 KEGG:mmu:67673
UCSC:uc008atr.1 GeneTree:ENSGT00390000018316 InParanoid:P62869
OMA:TLGDCGF EvolutionaryTrace:P62869 NextBio:325215 Bgee:P62869
Genevestigator:P62869 GermOnline:ENSMUSG00000055839 Uniprot:P62869
Length = 118
Score = 192 (72.6 bits), Expect = 3.3e-15, P = 3.3e-15
Identities = 41/88 (46%), Positives = 60/88 (68%)
Query: 24 RYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQENGEFE 83
R +GI K PP++Q+L+ KD++ +++G L E G TS A+ Q+PA VGLAFR ++ FE
Sbjct: 29 RIVEGILKRPPEEQRLY-KDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFRADD-TFE 86
Query: 84 PLELTPYSSPPDLPYVMKASEQANGQEN 111
L + P+SSPP+LP VMK + + G N
Sbjct: 87 ALRIEPFSSPPELPDVMKPQD-SGGSAN 113
>RGD|621200 [details] [associations]
symbol:Tceb2 "transcription elongation factor B (SIII),
polypeptide 2" species:10116 "Rattus norvegicus" [GO:0001076 "RNA
polymerase II transcription factor binding transcription factor
activity" evidence=IDA] [GO:0005667 "transcription factor complex"
evidence=IDA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=IDA] [GO:0016567 "protein ubiquitination"
evidence=IEA] [GO:0030891 "VCB complex" evidence=IDA] [GO:0031462
"Cul2-RING ubiquitin ligase complex" evidence=ISO] [GO:0031466
"Cul5-RING ubiquitin ligase complex" evidence=ISO] [GO:0031625
"ubiquitin protein ligase binding" evidence=ISO] [GO:0032403
"protein complex binding" evidence=IPI] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IDA] [GO:0004842 "ubiquitin-protein ligase activity"
evidence=IC] InterPro:IPR000626 Pfam:PF00240 SMART:SM00213
UniPathway:UPA00143 EMBL:L42855 RGD:621200 GO:GO:0045944
GO:GO:0016567 GO:GO:0005667 InterPro:IPR019955 PROSITE:PS50053
GO:GO:0001076 CTD:6923 eggNOG:NOG316144 HOGENOM:HOG000293425
HOVERGEN:HBG008581 KO:K03873 OrthoDB:EOG4BG8X6 EMBL:BC058463
IPI:IPI00210012 RefSeq:NP_112391.1 UniGene:Rn.108140
ProteinModelPortal:P62870 SMR:P62870 IntAct:P62870
MINT:MINT-4094305 STRING:P62870 PRIDE:P62870 GeneID:81807
KEGG:rno:81807 UCSC:RGD:621200 InParanoid:P62870 NextBio:615677
ArrayExpress:P62870 Genevestigator:P62870
GermOnline:ENSRNOG00000004814 GO:GO:0030891 Uniprot:P62870
Length = 118
Score = 192 (72.6 bits), Expect = 3.3e-15, P = 3.3e-15
Identities = 41/88 (46%), Positives = 60/88 (68%)
Query: 24 RYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQENGEFE 83
R +GI K PP++Q+L+ KD++ +++G L E G TS A+ Q+PA VGLAFR ++ FE
Sbjct: 29 RIVEGILKRPPEEQRLY-KDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFRADD-TFE 86
Query: 84 PLELTPYSSPPDLPYVMKASEQANGQEN 111
L + P+SSPP+LP VMK + + G N
Sbjct: 87 ALRIEPFSSPPELPDVMKPQD-SGGSAN 113
>UNIPROTKB|Q3SZ32 [details] [associations]
symbol:TCEB2 "Transcription elongation factor B (SIII),
polypeptide 2 (18kDa, elongin B)" species:9913 "Bos taurus"
[GO:0003746 "translation elongation factor activity" evidence=IEA]
InterPro:IPR000626 Pfam:PF00240 SMART:SM00213 GO:GO:0003746
InterPro:IPR019955 PROSITE:PS50053 CTD:6923 eggNOG:NOG316144
HOGENOM:HOG000293425 HOVERGEN:HBG008581 KO:K03873 OrthoDB:EOG4BG8X6
GeneTree:ENSGT00390000018316 OMA:TLGDCGF EMBL:DAAA02057317
EMBL:BC103196 IPI:IPI00699220 IPI:IPI00907699 RefSeq:NP_001029972.1
UniGene:Bt.49100 SMR:Q3SZ32 STRING:Q3SZ32
Ensembl:ENSBTAT00000026036 GeneID:617277 KEGG:bta:617277
InParanoid:Q3SZ32 NextBio:20900573 Uniprot:Q3SZ32
Length = 118
Score = 188 (71.2 bits), Expect = 8.8e-15, P = 8.8e-15
Identities = 39/84 (46%), Positives = 56/84 (66%)
Query: 24 RYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQENGEFE 83
R +GI K PP +Q+L+ KD++ +++G L E G TS A+ Q+PA VGLAFR + FE
Sbjct: 29 RIVEGILKRPPDEQRLY-KDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFRADEA-FE 86
Query: 84 PLELTPYSSPPDLPYVMKASEQAN 107
L + P+SSPP+LP VMK + +
Sbjct: 87 ALRIEPFSSPPELPDVMKPQDSGS 110
>UNIPROTKB|B8ZZU8 [details] [associations]
symbol:TCEB2 "Transcription elongation factor B (SIII),
polypeptide 2 (18kDa, elongin B), isoform CRA_b" species:9606 "Homo
sapiens" [GO:0003746 "translation elongation factor activity"
evidence=IEA] InterPro:IPR000626 Pfam:PF00240 SMART:SM00213
EMBL:CH471112 GO:GO:0003746 InterPro:IPR019955 PROSITE:PS50053
EMBL:AC092117 UniGene:Hs.172772 HGNC:HGNC:11619
HOGENOM:HOG000293425 HOVERGEN:HBG008581 IPI:IPI00917694 SMR:B8ZZU8
STRING:B8ZZU8 Ensembl:ENST00000409477 Uniprot:B8ZZU8
Length = 113
Score = 184 (69.8 bits), Expect = 2.3e-14, P = 2.3e-14
Identities = 39/84 (46%), Positives = 57/84 (67%)
Query: 24 RYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQENGEFE 83
R +GI K PP +Q+L+ KD++ +++G L E G TS A+ Q+PA VGLAFR ++ FE
Sbjct: 24 RIVEGILKRPPDEQRLY-KDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFRADD-TFE 81
Query: 84 PLELTPYSSPPDLPYVMKASEQAN 107
L + P+SSPP+LP VMK + +
Sbjct: 82 ALCIEPFSSPPELPDVMKPQDSGS 105
>UNIPROTKB|Q15370 [details] [associations]
symbol:TCEB2 "Transcription elongation factor B polypeptide
2" species:9606 "Homo sapiens" [GO:0016567 "protein ubiquitination"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0031625 "ubiquitin protein ligase binding" evidence=IDA]
[GO:0031462 "Cul2-RING ubiquitin ligase complex" evidence=IDA]
[GO:0031466 "Cul5-RING ubiquitin ligase complex" evidence=IDA]
[GO:0006461 "protein complex assembly" evidence=TAS] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0005829 "cytosol" evidence=TAS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0006368 "transcription elongation from RNA
polymerase II promoter" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0016032 "viral reproduction" evidence=TAS]
[GO:0033554 "cellular response to stress" evidence=TAS] [GO:0050434
"positive regulation of viral transcription" evidence=TAS]
[GO:0061418 "regulation of transcription from RNA polymerase II
promoter in response to hypoxia" evidence=TAS] [GO:0071456
"cellular response to hypoxia" evidence=TAS] Reactome:REACT_71
InterPro:IPR000626 Pfam:PF00240 SMART:SM00213 UniPathway:UPA00143
Reactome:REACT_120956 Prosite:PS00299 GO:GO:0005829
Reactome:REACT_116125 Reactome:REACT_6900 GO:GO:0005654
GO:GO:0016032 GO:GO:0006461 GO:GO:0016567 EMBL:CH471112
GO:GO:0006368 InterPro:IPR019955 PROSITE:PS50053
Pathway_Interaction_DB:hif1apathway GO:GO:0061418 GO:GO:0031462
GO:GO:0031466 GO:GO:0031625 PDB:2XAI PDBsum:2XAI
Reactome:REACT_1788 GO:GO:0050434 Reactome:REACT_1892 EMBL:L42856
EMBL:BM700019 EMBL:AC004493 EMBL:AC092117 EMBL:BC013306
EMBL:BC065000 IPI:IPI00026670 IPI:IPI00410162 PIR:I59405
RefSeq:NP_009039.1 RefSeq:NP_996896.1 UniGene:Hs.172772 PDB:1LM8
PDB:1LQB PDB:1VCB PDB:2C9W PDB:2IZV PDB:2JZ3 PDB:3DCG PDB:3ZRC
PDB:3ZRF PDB:3ZTC PDB:3ZTD PDB:3ZUN PDB:4AJY PDB:4AWJ PDB:4B95
PDB:4B9K PDBsum:1LM8 PDBsum:1LQB PDBsum:1VCB PDBsum:2C9W
PDBsum:2IZV PDBsum:2JZ3 PDBsum:3DCG PDBsum:3ZRC PDBsum:3ZRF
PDBsum:3ZTC PDBsum:3ZTD PDBsum:3ZUN PDBsum:4AJY PDBsum:4AWJ
PDBsum:4B95 PDBsum:4B9K ProteinModelPortal:Q15370 SMR:Q15370
DIP:DIP-29570N IntAct:Q15370 MINT:MINT-1323839 STRING:Q15370
PhosphoSite:Q15370 DMDM:32699512 PaxDb:Q15370 PeptideAtlas:Q15370
PRIDE:Q15370 DNASU:6923 Ensembl:ENST00000262306
Ensembl:ENST00000409906 GeneID:6923 KEGG:hsa:6923 UCSC:uc002crn.3
CTD:6923 GeneCards:GC16M002824 HGNC:HGNC:11619 MIM:600787
neXtProt:NX_Q15370 PharmGKB:PA36378 eggNOG:NOG316144
HOGENOM:HOG000293425 HOVERGEN:HBG008581 KO:K03873 OrthoDB:EOG4BG8X6
EvolutionaryTrace:Q15370 GenomeRNAi:6923 NextBio:27083
ArrayExpress:Q15370 Bgee:Q15370 CleanEx:HS_TCEB2
Genevestigator:Q15370 GermOnline:ENSG00000103363 Uniprot:Q15370
Length = 118
Score = 184 (69.8 bits), Expect = 2.3e-14, P = 2.3e-14
Identities = 39/84 (46%), Positives = 57/84 (67%)
Query: 24 RYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQENGEFE 83
R +GI K PP +Q+L+ KD++ +++G L E G TS A+ Q+PA VGLAFR ++ FE
Sbjct: 29 RIVEGILKRPPDEQRLY-KDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFRADD-TFE 86
Query: 84 PLELTPYSSPPDLPYVMKASEQAN 107
L + P+SSPP+LP VMK + +
Sbjct: 87 ALCIEPFSSPPELPDVMKPQDSGS 110
>WB|WBGene00001235 [details] [associations]
symbol:elb-1 species:6239 "Caenorhabditis elegans"
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0010171 "body morphogenesis" evidence=IMP]
[GO:0040011 "locomotion" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0018991
"oviposition" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0019904 "protein domain specific
binding" evidence=IPI] GO:GO:0009792 GO:GO:0040007 GO:GO:0018991
GO:GO:0002119 GO:GO:0010171 GO:GO:0040011 GO:GO:0040035 KO:K03873
GeneTree:ENSGT00390000018316 EMBL:AL032627 EMBL:AF326942 PIR:T26804
RefSeq:NP_499517.1 UniGene:Cel.19431 SMR:G5ECR7 IntAct:G5ECR7
EnsemblMetazoa:Y41C4A.10 GeneID:176605 KEGG:cel:CELE_Y41C4A.10
CTD:176605 WormBase:Y41C4A.10 OMA:NCGFTNQ NextBio:893266
Uniprot:G5ECR7
Length = 118
Score = 89 (36.4 bits), Expect = 0.00027, P = 0.00027
Identities = 30/84 (35%), Positives = 44/84 (52%)
Query: 28 GITKVPPKDQKLFNKD---NRE--MEEGNLLQEYGLTSAVAKAQSPALVGLAFRQENGEF 82
GIT+ P +L+ D N+ + + L + G +S AKAQ PA +GL R N E
Sbjct: 36 GITRDPVNHMELWKLDEDGNKSQLLHDTATLSDAGFSSTNAKAQCPAALGL--RLTNAE- 92
Query: 83 EPLELTPYSSPPDLPYVMKASEQA 106
E L ++ S+ P +P M+ EQA
Sbjct: 93 EHLTISDVSTAPPIPDTMR-QEQA 115
>UNIPROTKB|G5ECR7 [details] [associations]
symbol:elb-1 "RNA polymerase II transcription factor SIII
p18 subunit" species:6239 "Caenorhabditis elegans" [GO:0005515
"protein binding" evidence=IPI] GO:GO:0009792 GO:GO:0040007
GO:GO:0018991 GO:GO:0002119 GO:GO:0010171 GO:GO:0040011
GO:GO:0040035 KO:K03873 GeneTree:ENSGT00390000018316 EMBL:AL032627
EMBL:AF326942 PIR:T26804 RefSeq:NP_499517.1 UniGene:Cel.19431
SMR:G5ECR7 IntAct:G5ECR7 EnsemblMetazoa:Y41C4A.10 GeneID:176605
KEGG:cel:CELE_Y41C4A.10 CTD:176605 WormBase:Y41C4A.10 OMA:NCGFTNQ
NextBio:893266 Uniprot:G5ECR7
Length = 118
Score = 89 (36.4 bits), Expect = 0.00027, P = 0.00027
Identities = 30/84 (35%), Positives = 44/84 (52%)
Query: 28 GITKVPPKDQKLFNKD---NRE--MEEGNLLQEYGLTSAVAKAQSPALVGLAFRQENGEF 82
GIT+ P +L+ D N+ + + L + G +S AKAQ PA +GL R N E
Sbjct: 36 GITRDPVNHMELWKLDEDGNKSQLLHDTATLSDAGFSSTNAKAQCPAALGL--RLTNAE- 92
Query: 83 EPLELTPYSSPPDLPYVMKASEQA 106
E L ++ S+ P +P M+ EQA
Sbjct: 93 EHLTISDVSTAPPIPDTMR-QEQA 115
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.310 0.130 0.369 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 114 104 0.00091 102 3 11 23 0.37 31
29 0.50 31
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 7
No. of states in DFA: 528 (56 KB)
Total size of DFA: 106 KB (2073 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 11.62u 0.10s 11.72t Elapsed: 00:00:02
Total cpu time: 11.62u 0.10s 11.72t Elapsed: 00:00:02
Start: Thu Aug 15 16:21:48 2013 End: Thu Aug 15 16:21:50 2013