RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9488
(114 letters)
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich,
lectin-like, SPRY, protein transport/signaling protein
complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B
1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A*
3zrf_A
Length = 118
Score = 91.6 bits (227), Expect = 2e-25
Identities = 38/83 (45%), Positives = 55/83 (66%), Gaps = 2/83 (2%)
Query: 28 GITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQENGEFEPLEL 87
GI K PP++Q+L+ KD++ +++G L E G TS A+ Q+PA VGLAFR ++ FE L +
Sbjct: 33 GILKRPPEEQRLY-KDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFRADD-TFEALRI 90
Query: 88 TPYSSPPDLPYVMKASEQANGQE 110
P+SSPP+LP VMK +
Sbjct: 91 EPFSSPPELPDVMKPQDSGGSAN 113
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics,
apoptosis, riken structural genomics/proteomics
initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP:
d.15.1.1
Length = 92
Score = 29.0 bits (64), Expect = 0.15
Identities = 9/32 (28%), Positives = 11/32 (34%)
Query: 29 ITKVPPKDQKLFNKDNREMEEGNLLQEYGLTS 60
+ VP QKL K E L G+
Sbjct: 44 VIGVPQSFQKLIFKGKSLKEMETPLSALGIQD 75
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein
AT2G30105; ubiquitin-like protein, NESG, leucine-rich
repeat, structural genomics; NMR {Arabidopsis thaliana}
Length = 85
Score = 26.5 bits (59), Expect = 0.98
Identities = 10/31 (32%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 30 TKVPPKDQKLFNKDNREMEEGNLLQEYGLTS 60
T V P+ QKL K + + E + L++ + S
Sbjct: 45 TNVLPRGQKLIFK-GKVLVETSTLKQSDVGS 74
>1pj3_A NAD-dependent malic enzyme, mitochondrial; oxidative decarboxylase,
oxidoreductase; HET: NAD; 2.10A {Homo sapiens} SCOP:
c.2.1.7 c.58.1.3 PDB: 1pj2_A* 1do8_A* 1pj4_A* 1qr6_A*
1efl_A* 1pjl_A* 1efk_A* 1gz4_A* 1gz3_A*
Length = 564
Score = 27.0 bits (60), Expect = 1.7
Identities = 11/66 (16%), Positives = 19/66 (28%), Gaps = 11/66 (16%)
Query: 18 LYDKRPRYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGL---- 73
++DK KG Q+ F E AV + ++G+
Sbjct: 323 MFDKYGLLVKGRKAKIDSYQEPFTHSAPESIPDTFED------AVNILKPSTIIGVAGAG 376
Query: 74 -AFRQE 78
F +
Sbjct: 377 RLFTPD 382
>3ucj_A Carbonic anhydrase; alpha/beta, strand exchange, lyase-lyase
inhibitor complex; HET: AZM; 1.85A {Coccomyxa SP} PDB:
3uck_A 3ucm_A 3ucn_A 3uco_A
Length = 227
Score = 26.3 bits (58), Expect = 2.7
Identities = 14/110 (12%), Positives = 38/110 (34%), Gaps = 14/110 (12%)
Query: 1 MDNLICQLEIIITYLTLLYDKRPRYHKGITKVPPKDQKLFNKDNREMEE-------GNLL 53
+ + +++ + + R + + + D +M E N+
Sbjct: 113 LVWHPKTAGVTNLWISDVREVRDKNAAKLHGLSADDAW------DKMVELNVEAQVFNVC 166
Query: 54 QEYGLTSAVAKAQSPALVGLAFRQENGEFEPLELTPYSSPPDLPYVMKAS 103
+ +A A+ Q ++ G+ + G + L P + D +++A
Sbjct: 167 ASPIVQAAWARGQPLSVHGIVYTPGTGLVKELI-KPITGMEDAGALLRAD 215
>3e3i_A Carbonic anhydrase 2, beta carbonic anhydrase; allosteric site
mutant, lyase, META; 2.00A {Haemophilus influenzae} PDB:
3e3g_A 2a8d_A 2a8c_A 3e3f_A 3e31_A 3e2x_A 3e2a_A 3e28_A
3e2w_A 3e1w_A 3e1v_A 3e24_A 3mf3_A
Length = 229
Score = 25.1 bits (55), Expect = 5.8
Identities = 18/110 (16%), Positives = 37/110 (33%), Gaps = 17/110 (15%)
Query: 15 LTLLYDKRPRYHKGITKVPPKDQKLFNKDNREMEE-------GNLLQEYGLTSAVAKAQS 67
L + D ++ + K+ P+ + + + NL + + SA + Q
Sbjct: 120 LLHIRDIWFKHGHLLGKLSPEKR------ADMLTKINVAEQVYNLGRTSIVKSAWERGQK 173
Query: 68 PALVGLAFRQENGEFEPLELTPYSSPPDLPYVMK---ASEQANGQENITS 114
+L G + +G + +S L + A +ENI
Sbjct: 174 LSLHGWVYDVNDGFLVDQGVMA-TSRETLEISYRNAIARLSILDEENILK 222
>1ym3_A Carbonic anhydrase (carbonate dehydratase) (carbo dehydratase); Zn
protein, structural proteomics in europe, spine,
structur genomics; 1.75A {Mycobacterium tuberculosis}
PDB: 2a5v_A
Length = 215
Score = 25.1 bits (55), Expect = 6.1
Identities = 7/38 (18%), Positives = 15/38 (39%)
Query: 51 NLLQEYGLTSAVAKAQSPALVGLAFRQENGEFEPLELT 88
L+ S S A+VG+ ++ ++G +
Sbjct: 171 ILMARSSAISERIAGGSLAIVGVTYQLDDGRAVLRDHI 208
>1xm3_A Thiazole biosynthesis protein THIG; structural genomics, protein
structure initiative, PSI, NESG, northeast structural
genomics consortium; 1.80A {Bacillus subtilis} SCOP:
c.1.31.1 PDB: 1tyg_A
Length = 264
Score = 24.9 bits (55), Expect = 8.0
Identities = 6/20 (30%), Positives = 10/20 (50%)
Query: 58 LTSAVAKAQSPALVGLAFRQ 77
L +AV+ A P + A +
Sbjct: 206 LNTAVSGADDPVKMARAMKL 225
>2htm_A Thiazole biosynthesis protein THIG; thiamin biosynthesis, THIG,
thermus thermophilus HB8, structural genomics, NPPSFA;
2.30A {Thermus thermophilus}
Length = 268
Score = 24.5 bits (54), Expect = 9.5
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 58 LTSAVAKAQSPALVGLAFRQ 77
+ +A+A+AQ P + AFR
Sbjct: 206 VNTAIAEAQDPPAMAEAFRL 225
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.313 0.133 0.377
Gapped
Lambda K H
0.267 0.0662 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,656,859
Number of extensions: 84500
Number of successful extensions: 87
Number of sequences better than 10.0: 1
Number of HSP's gapped: 85
Number of HSP's successfully gapped: 12
Length of query: 114
Length of database: 6,701,793
Length adjustment: 77
Effective length of query: 37
Effective length of database: 4,551,876
Effective search space: 168419412
Effective search space used: 168419412
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (23.6 bits)