RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy9488
         (114 letters)



>d2c9wb1 d.15.1.1 (B:2-104) Elongin B {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 103

 Score = 81.4 bits (201), Expect = 4e-22
 Identities = 39/78 (50%), Positives = 54/78 (69%), Gaps = 2/78 (2%)

Query: 24  RYHKGITKVPPKDQKLFNKDNREMEEGNLLQEYGLTSAVAKAQSPALVGLAFRQENGEFE 83
           R  +GI K PP +Q+L+ KD++ +++G  L E G TS  A+ Q+PA VGLAFR +   FE
Sbjct: 28  RIVEGILKRPPDEQRLY-KDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFRAD-DTFE 85

Query: 84  PLELTPYSSPPDLPYVMK 101
            L + P+SSPP+LP VMK
Sbjct: 86  ALCIEPFSSPPELPDVMK 103


>d1wv2a_ c.1.31.1 (A:) Thiazole biosynthesis protein ThiG
           {Pseudomonas aeruginosa [TaxId: 287]}
          Length = 243

 Score = 27.6 bits (61), Expect = 0.31
 Identities = 5/20 (25%), Positives = 12/20 (60%)

Query: 58  LTSAVAKAQSPALVGLAFRQ 77
           + +A+A A+ P ++  A + 
Sbjct: 207 MNTAIAHAKDPVMMAEAMKH 226


>d1i6pa_ c.53.2.1 (A:) beta-carbonic anhydrase {Escherichia coli
           [TaxId: 562]}
          Length = 214

 Score = 26.2 bits (57), Expect = 0.79
 Identities = 10/38 (26%), Positives = 17/38 (44%)

Query: 51  NLLQEYGLTSAVAKAQSPALVGLAFRQENGEFEPLELT 88
           NL     + SA  + Q   + G A+   +G    L++T
Sbjct: 156 NLGHSTIMQSAWKRGQKVTIHGWAYGIHDGLLRDLDVT 193


>d1e8ga2 d.145.1.1 (A:6-273) Vanillyl-alcohol oxidase {Fungus
           (Penicillium simplicissimum) [TaxId: 69488]}
          Length = 268

 Score = 26.3 bits (56), Expect = 0.91
 Identities = 11/34 (32%), Positives = 15/34 (44%)

Query: 81  EFEPLELTPYSSPPDLPYVMKASEQANGQENITS 114
           EF PL L P  S  D    ++   +  G EN+  
Sbjct: 1   EFRPLTLPPKLSLSDFNEFIQDIIRIVGSENVEV 34


>d1xm3a_ c.1.31.1 (A:) Thiazole biosynthesis protein ThiG {Bacillus
           subtilis [TaxId: 1423]}
          Length = 251

 Score = 25.6 bits (56), Expect = 1.3
 Identities = 6/20 (30%), Positives = 10/20 (50%)

Query: 58  LTSAVAKAQSPALVGLAFRQ 77
           L +AV+ A  P  +  A + 
Sbjct: 205 LNTAVSGADDPVKMARAMKL 224


>d1wxva1 d.15.1.1 (A:7-87) Bag-family molecular chaperone
          regulator-1 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 81

 Score = 24.8 bits (54), Expect = 1.4
 Identities = 9/30 (30%), Positives = 10/30 (33%)

Query: 30 TKVPPKDQKLFNKDNREMEEGNLLQEYGLT 59
            VP   QKL  K     E    L   G+ 
Sbjct: 39 IGVPQSFQKLIFKGKSLKEMETPLSALGIQ 68


>d1wiaa_ d.15.1.1 (A:) Ubiquitin-like protein bab25500
          (2010008E23Rik) {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 95

 Score = 24.9 bits (54), Expect = 1.8
 Identities = 4/31 (12%), Positives = 7/31 (22%)

Query: 29 ITKVPPKDQKLFNKDNREMEEGNLLQEYGLT 59
                   KL  +     +    L    +T
Sbjct: 37 YFPGQESQMKLIYQGRLLQDPARTLSSLNIT 67


>d1ddza1 c.53.2.1 (A:84-325) beta-carbonic anhydrase {Red alga
           (Porphyridium purpureum) [TaxId: 35688]}
          Length = 242

 Score = 24.7 bits (53), Expect = 3.2
 Identities = 6/38 (15%), Positives = 14/38 (36%)

Query: 51  NLLQEYGLTSAVAKAQSPALVGLAFRQENGEFEPLELT 88
           N+     +  A    Q   + G+ +   +G+   L + 
Sbjct: 182 NVCATSIVQDAWDAGQELTVQGVVYGVGDGKLRDLGVV 219


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.313    0.133    0.377 

Gapped
Lambda     K      H
   0.267   0.0622    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 396,092
Number of extensions: 15307
Number of successful extensions: 24
Number of sequences better than 10.0: 1
Number of HSP's gapped: 23
Number of HSP's successfully gapped: 9
Length of query: 114
Length of database: 2,407,596
Length adjustment: 72
Effective length of query: 42
Effective length of database: 1,419,036
Effective search space: 59599512
Effective search space used: 59599512
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 47 (22.1 bits)