BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9489
(279 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P28024|PSB4_XENLA Proteasome subunit beta type-4 (Fragment) OS=Xenopus laevis
GN=psmb4 PE=2 SV=2
Length = 242
Score = 150 bits (378), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 65/122 (53%), Positives = 89/122 (72%)
Query: 157 VKQKITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDY 216
V+ + P+ TGTSVLG+ F+GGVI+AAD G YGS+ RF + RIM++N+ TILGA DY
Sbjct: 21 VRHTLNPMVTGTSVLGVKFDGGVIIAADMLGSYGSLARFRNISRIMKVNENTILGASGDY 80
Query: 217 ADFQYLNDIVKQKILDDDLHNDGFVLKPKSLHSWLTRVLYNRRSQFDPLWINAFVAGMQN 276
AD+QYL ++ Q ++D++L DG PK++HSWLTRV+YNRRS+ +PLW + G N
Sbjct: 81 ADYQYLKQVIDQMVIDEELVGDGHNYSPKAIHSWLTRVMYNRRSKMNPLWNTVVIGGFYN 140
Query: 277 GE 278
GE
Sbjct: 141 GE 142
Score = 90.5 bits (223), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 46/94 (48%), Positives = 62/94 (65%), Gaps = 5/94 (5%)
Query: 68 GPSLGKYHDFPNVLPHYFRRSGSFSTPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFN 127
G + G+ H FP P R + P+ TGTSVLG+ F+GGVI+AAD G YGS+ RF
Sbjct: 6 GTAPGELHCFPGAGP--VRHT---LNPMVTGTSVLGVKFDGGVIIAADMLGSYGSLARFR 60
Query: 128 DCPRIMQINKFTILGAGNDYADFQYLNDIVKQKI 161
+ RIM++N+ TILGA DYAD+QYL ++ Q +
Sbjct: 61 NISRIMKVNENTILGASGDYADYQYLKQVIDQMV 94
Score = 76.3 bits (186), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 36/63 (57%), Positives = 44/63 (69%)
Query: 1 FLGTVDKLGTAYEDKILSFGFGTHIAVPLLRQETEKNPQMSKEEAIALIKTCMDLLYVRD 60
FLG VDKLG AYE ++ GFG ++A PLLR+ TE +SKEEA L+ CM +LY RD
Sbjct: 144 FLGYVDKLGVAYEAPTIATGFGAYLAQPLLREVTENKATLSKEEARQLVDRCMKVLYYRD 203
Query: 61 ARS 63
ARS
Sbjct: 204 ARS 206
>sp|Q3T108|PSB4_BOVIN Proteasome subunit beta type-4 OS=Bos taurus GN=PSMB4 PE=1 SV=1
Length = 264
Score = 140 bits (354), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 65/137 (47%), Positives = 91/137 (66%), Gaps = 1/137 (0%)
Query: 142 GAGNDYADFQYLNDIVKQKITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRI 201
G+ D Y + I + + P+ TGTSVLGL F GGV++AAD G YGS+ RF + RI
Sbjct: 29 GSSVDPVSALYGSPITRTQ-NPMVTGTSVLGLKFEGGVVIAADMLGSYGSLARFRNISRI 87
Query: 202 MQINKFTILGAGNDYADFQYLNDIVKQKILDDDLHNDGFVLKPKSLHSWLTRVLYNRRSQ 261
M++N T+LGA DYADFQYL ++ Q ++D++L DG PK++HSWLTR +Y+RRS+
Sbjct: 88 MRVNNSTMLGASGDYADFQYLKQVLGQMVIDEELLGDGHSYSPKAIHSWLTRAMYSRRSK 147
Query: 262 FDPLWINAFVAGMQNGE 278
+PLW + G +GE
Sbjct: 148 MNPLWNTMVIGGYADGE 164
Score = 87.8 bits (216), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 48/111 (43%), Positives = 65/111 (58%), Gaps = 9/111 (8%)
Query: 60 DARSGA-KNGPSLGKYHDFPN--------VLPHYFRRSGSFSTPLTTGTSVLGLVFNGGV 110
++RSG GP+ G+++ P V Y P+ TGTSVLGL F GGV
Sbjct: 6 ESRSGLWAGGPAPGQFYRIPPTPGSSVDPVSALYGSPITRTQNPMVTGTSVLGLKFEGGV 65
Query: 111 ILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKI 161
++AAD G YGS+ RF + RIM++N T+LGA DYADFQYL ++ Q +
Sbjct: 66 VIAADMLGSYGSLARFRNISRIMRVNNSTMLGASGDYADFQYLKQVLGQMV 116
Score = 72.4 bits (176), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 34/63 (53%), Positives = 44/63 (69%)
Query: 1 FLGTVDKLGTAYEDKILSFGFGTHIAVPLLRQETEKNPQMSKEEAIALIKTCMDLLYVRD 60
FLG VD LG AYE L+ G+G ++A PLLR+ EK P +S+ EA L++ CM +LY RD
Sbjct: 166 FLGYVDMLGVAYEAPSLATGYGAYLAQPLLREVLEKQPVLSQTEARELVERCMRVLYYRD 225
Query: 61 ARS 63
ARS
Sbjct: 226 ARS 228
>sp|P28070|PSB4_HUMAN Proteasome subunit beta type-4 OS=Homo sapiens GN=PSMB4 PE=1 SV=4
Length = 264
Score = 139 bits (349), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 63/133 (47%), Positives = 89/133 (66%), Gaps = 1/133 (0%)
Query: 146 DYADFQYLNDIVKQKITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQIN 205
D A Y I + + P+ TGTSVLG+ F GGV++AAD G YGS+ RF + RIM++N
Sbjct: 33 DPASALYRGPITRTQ-NPMVTGTSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVN 91
Query: 206 KFTILGAGNDYADFQYLNDIVKQKILDDDLHNDGFVLKPKSLHSWLTRVLYNRRSQFDPL 265
T+LGA DYADFQYL ++ Q ++D++L DG P+++HSWLTR +Y+RRS+ +PL
Sbjct: 92 NSTMLGASGDYADFQYLKQVLGQMVIDEELLGDGHSYSPRAIHSWLTRAMYSRRSKMNPL 151
Query: 266 WINAFVAGMQNGE 278
W + G +GE
Sbjct: 152 WNTMVIGGYADGE 164
Score = 87.8 bits (216), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 45/110 (40%), Positives = 66/110 (60%), Gaps = 9/110 (8%)
Query: 61 ARSGA-KNGPSLGKYHDFPNVLPHYFRRSGSF--------STPLTTGTSVLGLVFNGGVI 111
+RSG GP+ G+++ P+ + + + P+ TGTSVLG+ F GGV+
Sbjct: 7 SRSGLWAGGPAPGQFYRIPSTPDSFMDPASALYRGPITRTQNPMVTGTSVLGVKFEGGVV 66
Query: 112 LAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKI 161
+AAD G YGS+ RF + RIM++N T+LGA DYADFQYL ++ Q +
Sbjct: 67 IAADMLGSYGSLARFRNISRIMRVNNSTMLGASGDYADFQYLKQVLGQMV 116
Score = 72.0 bits (175), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 34/63 (53%), Positives = 44/63 (69%)
Query: 1 FLGTVDKLGTAYEDKILSFGFGTHIAVPLLRQETEKNPQMSKEEAIALIKTCMDLLYVRD 60
FLG VD LG AYE L+ G+G ++A PLLR+ EK P +S+ EA L++ CM +LY RD
Sbjct: 166 FLGYVDMLGVAYEAPSLATGYGAYLAQPLLREVLEKQPVLSQTEARDLVERCMRVLYYRD 225
Query: 61 ARS 63
ARS
Sbjct: 226 ARS 228
>sp|P99026|PSB4_MOUSE Proteasome subunit beta type-4 OS=Mus musculus GN=Psmb4 PE=1 SV=1
Length = 264
Score = 138 bits (348), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 59/122 (48%), Positives = 86/122 (70%)
Query: 157 VKQKITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDY 216
+ + P+ TGTSVLG+ F+GGV++AAD G YGS+ RF + RIM++N T+LGA DY
Sbjct: 43 ITRTQNPMVTGTSVLGVKFDGGVVIAADMLGSYGSLARFRNISRIMRVNDSTMLGASGDY 102
Query: 217 ADFQYLNDIVKQKILDDDLHNDGFVLKPKSLHSWLTRVLYNRRSQFDPLWINAFVAGMQN 276
ADFQYL ++ Q ++D++L DG P+++HSWLTR +Y+RRS+ +PLW + G +
Sbjct: 103 ADFQYLKQVLGQMVIDEELLGDGHSYSPRAIHSWLTRAMYSRRSKMNPLWNTMVIGGYAD 162
Query: 277 GE 278
GE
Sbjct: 163 GE 164
Score = 85.5 bits (210), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 38/68 (55%), Positives = 51/68 (75%)
Query: 94 PLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYL 153
P+ TGTSVLG+ F+GGV++AAD G YGS+ RF + RIM++N T+LGA DYADFQYL
Sbjct: 49 PMVTGTSVLGVKFDGGVVIAADMLGSYGSLARFRNISRIMRVNDSTMLGASGDYADFQYL 108
Query: 154 NDIVKQKI 161
++ Q +
Sbjct: 109 KQVLGQMV 116
Score = 72.4 bits (176), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 34/63 (53%), Positives = 44/63 (69%)
Query: 1 FLGTVDKLGTAYEDKILSFGFGTHIAVPLLRQETEKNPQMSKEEAIALIKTCMDLLYVRD 60
FLG VD LG AYE L+ G+G ++A PLLR+ EK P +S+ EA L++ CM +LY RD
Sbjct: 166 FLGYVDMLGVAYEAPSLATGYGAYLAQPLLREVLEKQPVLSQTEARELVERCMRVLYYRD 225
Query: 61 ARS 63
ARS
Sbjct: 226 ARS 228
>sp|P34067|PSB4_RAT Proteasome subunit beta type-4 OS=Rattus norvegicus GN=Psmb4 PE=1
SV=2
Length = 263
Score = 135 bits (340), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 58/116 (50%), Positives = 82/116 (70%)
Query: 163 PLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYL 222
P+ TGTSVLG+ F+ GV++AAD G YGS+ RF + RIM++N T+LGA DYADFQYL
Sbjct: 48 PMVTGTSVLGVKFDCGVVIAADMLGSYGSLARFRNISRIMRVNDSTMLGASGDYADFQYL 107
Query: 223 NDIVKQKILDDDLHNDGFVLKPKSLHSWLTRVLYNRRSQFDPLWINAFVAGMQNGE 278
++ Q ++D++L DG P+++HSWLTR +Y+RRS+ +PLW + G GE
Sbjct: 108 KQVLGQMVIDEELFGDGHSYSPRAIHSWLTRAMYSRRSKMNPLWNTKVIGGYAGGE 163
Score = 83.6 bits (205), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 44/110 (40%), Positives = 66/110 (60%), Gaps = 8/110 (7%)
Query: 60 DARSGA-KNGPSLGKYHDFPNV-------LPHYFRRSGSFSTPLTTGTSVLGLVFNGGVI 111
++R+G GP+ G+++ P+ + R P+ TGTSVLG+ F+ GV+
Sbjct: 6 ESRTGHWAGGPAPGQFYRVPSTPSCLMDPMSAPARPITRTQNPMVTGTSVLGVKFDCGVV 65
Query: 112 LAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKI 161
+AAD G YGS+ RF + RIM++N T+LGA DYADFQYL ++ Q +
Sbjct: 66 IAADMLGSYGSLARFRNISRIMRVNDSTMLGASGDYADFQYLKQVLGQMV 115
Score = 72.4 bits (176), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 34/63 (53%), Positives = 44/63 (69%)
Query: 1 FLGTVDKLGTAYEDKILSFGFGTHIAVPLLRQETEKNPQMSKEEAIALIKTCMDLLYVRD 60
FLG VD LG AYE L+ G+G ++A PLLR+ EK P +S+ EA L++ CM +LY RD
Sbjct: 165 FLGYVDMLGVAYEAPSLATGYGAYLAQPLLREVLEKQPVLSQTEARELVERCMRVLYYRD 224
Query: 61 ARS 63
ARS
Sbjct: 225 ARS 227
>sp|Q29384|PSB4_PIG Proteasome subunit beta type-4 (Fragment) OS=Sus scrofa GN=PSMB4
PE=2 SV=1
Length = 154
Score = 132 bits (333), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 57/110 (51%), Positives = 79/110 (71%)
Query: 157 VKQKITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDY 216
+ + P+ TGTSVLG+ F GGV++AAD G YGS+ RF + RIM++N T+LGA DY
Sbjct: 43 ITRTQNPMVTGTSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGASGDY 102
Query: 217 ADFQYLNDIVKQKILDDDLHNDGFVLKPKSLHSWLTRVLYNRRSQFDPLW 266
ADFQYL ++ Q ++D++L DG PK++HSWLTR +YNRR + +PLW
Sbjct: 103 ADFQYLKQVLGQMVIDEELLGDGHSYSPKAIHSWLTRAMYNRRFKMNPLW 152
Score = 85.1 bits (209), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 48/115 (41%), Positives = 68/115 (59%), Gaps = 13/115 (11%)
Query: 58 VRDARSGA-KNGPSLGKYHDFP----------NVLPHYFRRSGSFSTPLTTGTSVLGLVF 106
+ ++RSG GP+ G+++ P +VL Y P+ TGTSVLG+ F
Sbjct: 4 ILESRSGHWAGGPAPGQFYRIPPTPGSIVDPXSVL--YGSPITRTQNPMVTGTSVLGVKF 61
Query: 107 NGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKI 161
GGV++AAD G YGS+ RF + RIM++N T+LGA DYADFQYL ++ Q +
Sbjct: 62 EGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGASGDYADFQYLKQVLGQMV 116
>sp|Q9VNA5|PSB4_DROME Proteasome subunit beta type-4 OS=Drosophila melanogaster
GN=Prosbeta7 PE=2 SV=1
Length = 268
Score = 110 bits (274), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 51/111 (45%), Positives = 76/111 (68%), Gaps = 1/111 (0%)
Query: 170 VLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQK 229
VLG+ ++ GV+LAAD+ YGSM R+ + R+ ++NK +LG D+AD Q + + QK
Sbjct: 60 VLGIRYDSGVMLAADTLVSYGSMARYQNIERVFKVNKNILLGGSGDFADIQSIKRNIDQK 119
Query: 230 ILDDDLHNDGFVLKPKSLHSWLTRVLYNRRSQFDPLWINAFVAGMQN-GEP 279
+++D +D +KPKSL SW+TRVLYNRRS+ +PL+I+ V G+ N G P
Sbjct: 120 MIEDQCCDDNIEMKPKSLASWMTRVLYNRRSRMNPLYIDVVVGGVDNEGTP 170
Score = 65.9 bits (159), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 43/63 (68%)
Query: 1 FLGTVDKLGTAYEDKILSFGFGTHIAVPLLRQETEKNPQMSKEEAIALIKTCMDLLYVRD 60
+L VD G +YED +++ GF H+AVPL+R++ K+ + EA LI+TCM++LY RD
Sbjct: 171 YLANVDLRGRSYEDYVVATGFARHLAVPLVREKKPKDRDFTAVEASELIRTCMEVLYYRD 230
Query: 61 ARS 63
R+
Sbjct: 231 TRN 233
Score = 61.2 bits (147), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 61/107 (57%), Gaps = 11/107 (10%)
Query: 66 KNGPSLGKYHDFP------NVLPHYFRRSGSFSTP-----LTTGTSVLGLVFNGGVILAA 114
+NGP+ G++++F LP G + T TTGTSVLG+ ++ GV+LAA
Sbjct: 14 QNGPAPGEFYNFTGGQTPVQQLPRELTTMGPYGTKHSTASSTTGTSVLGIRYDSGVMLAA 73
Query: 115 DSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKI 161
D+ YGSM R+ + R+ ++NK +LG D+AD Q + + QK+
Sbjct: 74 DTLVSYGSMARYQNIERVFKVNKNILLGGSGDFADIQSIKRNIDQKM 120
>sp|Q7DLR9|PSB4_ARATH Proteasome subunit beta type-4 OS=Arabidopsis thaliana GN=PBG1 PE=1
SV=2
Length = 246
Score = 108 bits (269), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 46/121 (38%), Positives = 82/121 (67%)
Query: 158 KQKITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYA 217
++ + P TGTS++ + + GV++A+D G YGS +R+ + R+ I K ++LGA + +
Sbjct: 22 QRTLYPYVTGTSIVAIKYKDGVLMASDMGGSYGSTLRYKNIERVKAIGKHSLLGASGEIS 81
Query: 218 DFQYLNDIVKQKILDDDLHNDGFVLKPKSLHSWLTRVLYNRRSQFDPLWINAFVAGMQNG 277
DFQ + + + L+D++ +DG L PK +H++LTRV+YNRR++F+PLW + G++NG
Sbjct: 82 DFQEILRYLDELTLNDNMWDDGNSLGPKEIHNYLTRVMYNRRNKFNPLWNTLVLGGVKNG 141
Query: 278 E 278
+
Sbjct: 142 K 142
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 43/68 (63%), Gaps = 4/68 (5%)
Query: 94 PLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQ-- 151
P TGTS++ + + GV++A+D G YGS +R+ + R+ I K ++LGA + +DFQ
Sbjct: 27 PYVTGTSIVAIKYKDGVLMASDMGGSYGSTLRYKNIERVKAIGKHSLLGASGEISDFQEI 86
Query: 152 --YLNDIV 157
YL+++
Sbjct: 87 LRYLDELT 94
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 38/60 (63%), Gaps = 2/60 (3%)
Query: 1 FLGTVDKLGTAYEDKILSFGFGTHIAVPLLRQETEKNPQMSKEEAIALIKTCMDLLYVRD 60
+LG V +G ++ED ++ GFG H+A P+LR E + +S E+ + L++ CM +L RD
Sbjct: 144 YLGMVSMIGVSFEDDHVATGFGNHLARPILRDEWHAD--LSFEDGVKLLEKCMRVLLYRD 201
>sp|Q9USQ9|PSB7_SCHPO Probable proteasome subunit beta type-7 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPBC577.10 PE=3 SV=1
Length = 262
Score = 107 bits (268), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 48/125 (38%), Positives = 82/125 (65%), Gaps = 2/125 (1%)
Query: 157 VKQKITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDY 216
+++ + P+ TG+SVL L F GV++AAD+ YGS+ RF D R+ ++ TI+GAG D
Sbjct: 33 IQRTVQPIVTGSSVLALKFADGVMIAADNLASYGSLARFYDVERLTKVGDNTIVGAGGDI 92
Query: 217 ADFQYLNDIVKQKILDDDLHNDGFVLKPKSLHSWLTRVLYNRRSQFDPLWINAFVAGM-- 274
+D+Q + ++++ + + + DG+ L+P +H +L++VLY RR++ DP W VAG+
Sbjct: 93 SDYQQIQRLLEKLEIKEGNYGDGYALQPSYIHEYLSKVLYARRNKLDPYWNQLIVAGVDG 152
Query: 275 QNGEP 279
+N EP
Sbjct: 153 ENKEP 157
Score = 63.5 bits (153), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 45/66 (68%)
Query: 94 PLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYL 153
P+ TG+SVL L F GV++AAD+ YGS+ RF D R+ ++ TI+GAG D +D+Q +
Sbjct: 39 PIVTGSSVLALKFADGVMIAADNLASYGSLARFYDVERLTKVGDNTIVGAGGDISDYQQI 98
Query: 154 NDIVKQ 159
++++
Sbjct: 99 QRLLEK 104
Score = 52.8 bits (125), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 39/65 (60%), Gaps = 2/65 (3%)
Query: 1 FLGTVDKLGTAYEDKILSFGFGTHIAVPLLRQETEKN--PQMSKEEAIALIKTCMDLLYV 58
++ D GT Y ++ GF H+A+P+LR+ T+ + +SKE A A I CM +L+
Sbjct: 158 YVAFADLRGTTYSAPAIATGFAMHLALPMLRKATDDDRWKTLSKESARATIDECMRVLFY 217
Query: 59 RDARS 63
RDARS
Sbjct: 218 RDARS 222
>sp|Q556Q0|PSB4_DICDI Proteasome subunit beta type-4 OS=Dictyostelium discoideum
GN=psmB4-1 PE=3 SV=1
Length = 259
Score = 96.3 bits (238), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 46/122 (37%), Positives = 76/122 (62%), Gaps = 1/122 (0%)
Query: 158 KQK-ITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDY 216
KQK + P+ TGTSV+ + ++ GV++ +D YGS+ RFN R+ + +TI+GA +Y
Sbjct: 34 KQKTLDPIVTGTSVIAIKYDKGVVMGSDMLLSYGSLARFNSTERMKKFGGYTIVGASGEY 93
Query: 217 ADFQYLNDIVKQKILDDDLHNDGFVLKPKSLHSWLTRVLYNRRSQFDPLWINAFVAGMQN 276
+DFQ + + + + DD +DG L + + ++L RVLYN+R++ +PLW V G Q
Sbjct: 94 SDFQSITNTLNDLVTDDHCMDDGSKLSSEEIWNYLARVLYNQRNRGNPLWNTLVVMGYQG 153
Query: 277 GE 278
G+
Sbjct: 154 GK 155
Score = 78.6 bits (192), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 34/66 (51%), Positives = 50/66 (75%)
Query: 1 FLGTVDKLGTAYEDKILSFGFGTHIAVPLLRQETEKNPQMSKEEAIALIKTCMDLLYVRD 60
FLG VD +GT Y+D I++ G+G+HIA+PLLR+ ++NP M+ E+A LI+ C+ +L+ RD
Sbjct: 157 FLGKVDLVGTCYKDDIITTGYGSHIALPLLRKARDENPNMNLEQAKQLIQDCLRVLFYRD 216
Query: 61 ARSGAK 66
ARS K
Sbjct: 217 ARSSKK 222
Score = 59.7 bits (143), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 44/69 (63%)
Query: 94 PLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYL 153
P+ TGTSV+ + ++ GV++ +D YGS+ RFN R+ + +TI+GA +Y+DFQ +
Sbjct: 40 PIVTGTSVIAIKYDKGVVMGSDMLLSYGSLARFNSTERMKKFGGYTIVGASGEYSDFQSI 99
Query: 154 NDIVKQKIT 162
+ + +T
Sbjct: 100 TNTLNDLVT 108
>sp|P30657|PSB7_YEAST Proteasome subunit beta type-7 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=PRE4 PE=1 SV=1
Length = 266
Score = 94.4 bits (233), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 47/121 (38%), Positives = 75/121 (61%), Gaps = 5/121 (4%)
Query: 163 PLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQY- 221
P+ TGTSV+ + ++ GVI+AAD+ G YGS++RFN R++ + T++G D +D Q+
Sbjct: 37 PIVTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHI 96
Query: 222 ---LNDIVKQKILDDDLHNDGFVLKPKSLHSWLTRVLYNRRSQFDPLWINAFVAGMQ-NG 277
L D+V + D+ L + L+P + +L V+Y RRS+ +PLW VAG+Q NG
Sbjct: 97 ERLLKDLVTENAYDNPLADAEEALEPSYIFEYLATVMYQRRSKMNPLWNAIIVAGVQSNG 156
Query: 278 E 278
+
Sbjct: 157 D 157
Score = 64.7 bits (156), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 47/69 (68%)
Query: 94 PLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYL 153
P+ TGTSV+ + ++ GVI+AAD+ G YGS++RFN R++ + T++G D +D Q++
Sbjct: 37 PIVTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHI 96
Query: 154 NDIVKQKIT 162
++K +T
Sbjct: 97 ERLLKDLVT 105
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 37/66 (56%), Gaps = 3/66 (4%)
Query: 1 FLGTVDKLGTAYEDKILSFGFGTHIAVPLLRQETEKN---PQMSKEEAIALIKTCMDLLY 57
FL V+ LG Y L+ GFG H+A PLLR+ ++ P+ + + A I M +LY
Sbjct: 159 FLRYVNLLGVTYSSPTLATGFGAHMANPLLRKVVDRESDIPKTTVQVAEEAIVNAMRVLY 218
Query: 58 VRDARS 63
RDARS
Sbjct: 219 YRDARS 224
>sp|Q8SS01|PSB7_ENCCU Probable proteasome subunit beta type-7 OS=Encephalitozoon cuniculi
(strain GB-M1) GN=PRE4 PE=1 SV=1
Length = 235
Score = 69.3 bits (168), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 59/115 (51%), Gaps = 5/115 (4%)
Query: 160 KITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADF 219
K+ TGT+V+ + G+I+ AD+ G YG + + + RI ++ T+LG + +D
Sbjct: 9 KMRDFVTGTTVVSFRYRDGIIMGADTRGSYGRLAKLSGVQRIFKVGDQTLLGMSGEISDM 68
Query: 220 QYLNDIVKQKILDDDLHNDGFVLKPKSLHSWLTRVLYNRRSQFDPLWINAFVAGM 274
QYL K L D + PK H + R+LY+ RS+ PL ++ V G+
Sbjct: 69 QYL-----VKTLTILTQEDNRRIDPKGYHKMIQRILYSARSKISPLNLSVCVGGL 118
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 34/59 (57%)
Query: 95 LTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYL 153
TGT+V+ + G+I+ AD+ G YG + + + RI ++ T+LG + +D QYL
Sbjct: 13 FVTGTTVVSFRYRDGIIMGADTRGSYGRLAKLSGVQRIFKVGDQTLLGMSGEISDMQYL 71
>sp|Q8TW10|PSB_METKA Proteasome subunit beta OS=Methanopyrus kandleri (strain AV19 / DSM
6324 / JCM 9639 / NBRC 100938) GN=psmB PE=3 SV=1
Length = 210
Score = 52.0 bits (123), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/121 (22%), Positives = 63/121 (52%), Gaps = 1/121 (0%)
Query: 159 QKITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYAD 218
+++ LT GT+ +G++ + GV+LAAD G+++ +I +I+ + + AD
Sbjct: 2 KELDQLTKGTTTVGILADKGVVLAADRRAVMGNLIAGKQVKKIFRIHDYIGVTTAGSVAD 61
Query: 219 FQYLNDIVKQKILDDDLHNDGFVLKPKSLHSWLTRVLYNRRSQFDPLWINAFVAGMQNGE 278
Q + D+++ + +L ++ + ++L + ++ VL++ F P + V G + +
Sbjct: 62 AQKIVDLMRAEARLYELRHNRMI-SARALANMISHVLHSSLKAFRPYLVQLIVGGFNDDD 120
Query: 279 P 279
P
Sbjct: 121 P 121
Score = 38.9 bits (89), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 37/66 (56%)
Query: 95 LTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLN 154
LT GT+ +G++ + GV+LAAD G+++ +I +I+ + + AD Q +
Sbjct: 7 LTKGTTTVGILADKGVVLAADRRAVMGNLIAGKQVKKIFRIHDYIGVTTAGSVADAQKIV 66
Query: 155 DIVKQK 160
D+++ +
Sbjct: 67 DLMRAE 72
>sp|A0RU86|PSB1_CENSY Proteasome subunit beta 1 OS=Cenarchaeum symbiosum (strain A)
GN=psmB1 PE=3 SV=1
Length = 193
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 54/115 (46%), Gaps = 8/115 (6%)
Query: 167 GTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIV 226
G + +G+ + GGVILA++ YG+ + + + QI + AD Q L+ +
Sbjct: 3 GATAVGITYAGGVILASEKRIAYGNFLVSKNTRKTFQITPYVGAACAGLVADMQILSLQI 62
Query: 227 K--QKILDDDLHNDGFVLKPKSLHSWLTRVLYNRRSQFDPLWINAFVAGMQNGEP 279
KI DL D + P S+ ++ ++Y RR F PL V G+ GEP
Sbjct: 63 SALAKIRKMDLKRD---IPPNSVAKMMSNMMYERR--FFPLLTQVIVGGVV-GEP 111
Score = 31.6 bits (70), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 28/57 (49%)
Query: 98 GTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLN 154
G + +G+ + GGVILA++ YG+ + + + QI + AD Q L+
Sbjct: 3 GATAVGITYAGGVILASEKRIAYGNFLVSKNTRKTFQITPYVGAACAGLVADMQILS 59
>sp|A0B5B1|PSB_METTP Proteasome subunit beta OS=Methanosaeta thermophila (strain DSM
6194 / PT) GN=psmB PE=3 SV=1
Length = 207
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 53/113 (46%), Gaps = 3/113 (2%)
Query: 167 GTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIV 226
GT+ +G+V +GGV+LA++S GS + +I QI+ L D Q L ++
Sbjct: 7 GTTTVGIVCDGGVVLASESRATMGSFIASRTAKKIYQIDDLVGLTTAGVVGDAQALVRMI 66
Query: 227 KQKILDDDLHNDGFVLKPKSLHSWLTRVLYNRRSQFDPLWINAFVAGMQNGEP 279
+ + + G L K++ S L+ +L RR + P + V G+ P
Sbjct: 67 QAEARLYRMQR-GEPLTIKAITSLLSNILSARR--YFPFLVQLVVGGVDKMGP 116
Score = 37.0 bits (84), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 8/76 (10%)
Query: 98 GTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIV 157
GT+ +G+V +GGV+LA++S GS + +I QI+ L D Q L ++
Sbjct: 7 GTTTVGIVCDGGVVLASESRATMGSFIASRTAKKIYQIDDLVGLTTAGVVGDAQALVRMI 66
Query: 158 K--------QKITPLT 165
+ Q+ PLT
Sbjct: 67 QAEARLYRMQRGEPLT 82
>sp|Q9YER0|PSB2_AERPE Proteasome subunit beta 2 OS=Aeropyrum pernix (strain ATCC 700893 /
DSM 11879 / JCM 9820 / NBRC 100138 / K1) GN=psmB2 PE=3
SV=2
Length = 219
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 59/110 (53%), Gaps = 7/110 (6%)
Query: 166 TGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDI 225
+GT+ +GL+ + VILAAD G ++ +I+ ++ + + AD Q L+D+
Sbjct: 24 SGTTTVGLIASDHVILAADKRATAGFLIASRRVKKIVMLSNYVAMTVSGLVADAQILSDV 83
Query: 226 VKQKILDDDLHNDGFVLKP--KSLHSWLTRVLYNRRSQFDPLWINAFVAG 273
++++I ++ N +KP + + S L+ +L++ S+F P + V G
Sbjct: 84 LREEIRLYEMTNK---VKPSVRFVASLLSNILFS--SKFFPYIVQLIVGG 128
Score = 38.5 bits (88), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 37/65 (56%)
Query: 97 TGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDI 156
+GT+ +GL+ + VILAAD G ++ +I+ ++ + + AD Q L+D+
Sbjct: 24 SGTTTVGLIASDHVILAADKRATAGFLIASRRVKKIVMLSNYVAMTVSGLVADAQILSDV 83
Query: 157 VKQKI 161
++++I
Sbjct: 84 LREEI 88
Score = 35.0 bits (79), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 2 LGTVDKLGTAYEDKILSFGFGTHIAVPLLRQETEKNPQMSKEEAIALIKTCMDLLYVRDA 61
L T+D G+ EDK + G G+ IA +L + ++ +S EEAI + T + +RDA
Sbjct: 135 LYTLDLFGSITEDKYTATGSGSPIAYGVLEERYRED--LSVEEAIKVATTAIRSAVLRDA 192
Query: 62 RSG 64
SG
Sbjct: 193 ASG 195
>sp|A8AB58|PSB2_IGNH4 Proteasome subunit beta 2 OS=Ignicoccus hospitalis (strain KIN4/I /
DSM 18386 / JCM 14125) GN=psmB2 PE=3 SV=1
Length = 212
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 58/117 (49%), Gaps = 3/117 (2%)
Query: 157 VKQKITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDY 216
V +K+ GT+ +G+ V+LAAD G+ + +I++I+ + +
Sbjct: 3 VDEKVARALKGTTTVGIRSEKAVVLAADKRATAGNFIVHKRVEKIVKISDYMAMTTAGLV 62
Query: 217 ADFQYLNDIVKQKILDDDLHNDGFVLKPKSLHSWLTRVLYNRRSQFDPLWINAFVAG 273
AD Q L D+++ ++ + +L + + K+ ++L+ VL++ R F P + V G
Sbjct: 63 ADAQVLADVLRMEVKNYELFHKKR-MSVKAAATFLSNVLHSAR--FYPYIVQLLVGG 116
Score = 35.0 bits (79), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 33/64 (51%)
Query: 98 GTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIV 157
GT+ +G+ V+LAAD G+ + +I++I+ + + AD Q L D++
Sbjct: 13 GTTTVGIRSEKAVVLAADKRATAGNFIVHKRVEKIVKISDYMAMTTAGLVADAQVLADVL 72
Query: 158 KQKI 161
+ ++
Sbjct: 73 RMEV 76
Score = 32.0 bits (71), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 10/82 (12%)
Query: 2 LGTVDKLGTAYEDKILSFGFGTHIAVPLLRQETEKNPQMSKEEAIALIKTCMDLLYVRDA 61
L ++D GT E++ L G G+ +AV ++ E E NP M EE + L + RD
Sbjct: 123 LYSLDWFGTVAEEEFLVTGSGSPMAVGVI--EAEYNPNMDLEELVNLAVRAVFAATRRDT 180
Query: 62 RSGA--------KNGPSLGKYH 75
SG +NG ++ Y
Sbjct: 181 ASGEGIDVAVIDRNGITMRHYR 202
>sp|B1L6X8|PSB2_KORCO Proteasome subunit beta 2 OS=Korarchaeum cryptofilum (strain OPF8)
GN=psmB2 PE=3 SV=1
Length = 198
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 49/106 (46%), Gaps = 3/106 (2%)
Query: 168 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVK 227
+ LGL F+GGV+LAAD Y + ++ IN+ + DFQ L D++K
Sbjct: 4 ATALGLRFDGGVVLAADRRVSYNGFILSKSARKVFLINERVGVSTAGLPGDFQELVDVLK 63
Query: 228 QKILDDDLHNDGFVLKPKSLHSWLTRVLYNRRSQFDPLWINAFVAG 273
I +L N+ P ++ L+ +LY R F ++ V G
Sbjct: 64 YNITMYELENEK-AATPTNVAKLLSILLYQGR--FSGIYYAELVVG 106
Score = 38.5 bits (88), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 32/64 (50%)
Query: 99 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVK 158
+ LGL F+GGV+LAAD Y + ++ IN+ + DFQ L D++K
Sbjct: 4 ATALGLRFDGGVVLAADRRVSYNGFILSKSARKVFLINERVGVSTAGLPGDFQELVDVLK 63
Query: 159 QKIT 162
IT
Sbjct: 64 YNIT 67
>sp|A7KE01|PB6LA_SALSA Proteasome subunit beta type-6-A like protein OS=Salmo salar
GN=psmb6l-a PE=3 SV=1
Length = 217
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 55/117 (47%), Gaps = 6/117 (5%)
Query: 156 IVKQKITPLTTGTSVLGLVFNGGVILAADS-AGYYGSMMRFNDCPRIMQINKFTILGAGN 214
++ +I ++TGT++L + FNGGVI+ +DS A GS + +++Q++
Sbjct: 5 LMDSQIKGVSTGTTILAVTFNGGVIIGSDSRASIGGSYVSSKTINKLIQVHDRIFCCIAG 64
Query: 215 DYADFQYLNDIVKQKILDDDLHNDGFVLKP--KSLHSWLTRVLYNRRSQFDPLWINA 269
AD Q + K +I H+ P K+ S L + YN + + +I A
Sbjct: 65 SLADAQAVTKAAKFQI---SFHSIQMESPPLVKAAASVLKELCYNNKEELQAGFITA 118
Score = 41.6 bits (96), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 72/162 (44%), Gaps = 27/162 (16%)
Query: 95 LTTGTSVLGLVFNGGVILAADS-AGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYL 153
++TGT++L + FNGGVI+ +DS A GS + +++Q++ AD Q +
Sbjct: 13 VSTGTTILAVTFNGGVIIGSDSRASIGGSYVSSKTINKLIQVHDRIFCCIAGSLADAQAV 72
Query: 154 NDIVKQKIT---------PLT-TGTSVLG-LVFNGGVILAADSAGYYGSMMRFNDCPRIM 202
K +I+ PL SVL L +N L AG+ + P++
Sbjct: 73 TKAAKFQISFHSIQMESPPLVKAAASVLKELCYNNKEEL---QAGFITAGWDRKKGPQVY 129
Query: 203 QI--------NKFTILGAGND----YADFQYLNDIVKQKILD 232
+ FTI G+G+ YAD +Y D+ K++ L
Sbjct: 130 TVALGGMLLSQPFTIGGSGSTYIYGYADAKYKPDMSKEECLQ 171
>sp|A7KII6|PB6LB_SALSA Proteasome subunit beta type-6-B like protein OS=Salmo salar
GN=psmb6l-b PE=3 SV=1
Length = 217
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 53/113 (46%), Gaps = 6/113 (5%)
Query: 160 KITPLTTGTSVLGLVFNGGVILAADS-AGYYGSMMRFNDCPRIMQINKFTILGAGNDYAD 218
+I ++TGT++L + FNGGVI+ +DS A GS + +++Q++ AD
Sbjct: 9 QIKGVSTGTTILAVTFNGGVIIGSDSRASIGGSYVSSKTINKLIQVHDRIFCCIAGSLAD 68
Query: 219 FQYLNDIVKQKILDDDLHNDGFVLKP--KSLHSWLTRVLYNRRSQFDPLWINA 269
Q + K +I H+ P K+ S L + YN + + +I A
Sbjct: 69 AQAVTKAAKFQI---SFHSIQMESPPLVKAAASVLKELCYNNKEELQAGFITA 118
Score = 41.6 bits (96), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 72/161 (44%), Gaps = 27/161 (16%)
Query: 95 LTTGTSVLGLVFNGGVILAADS-AGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYL 153
++TGT++L + FNGGVI+ +DS A GS + +++Q++ AD Q +
Sbjct: 13 VSTGTTILAVTFNGGVIIGSDSRASIGGSYVSSKTINKLIQVHDRIFCCIAGSLADAQAV 72
Query: 154 NDIVKQKIT---------PLT-TGTSVLG-LVFNGGVILAADSAGYYGSMMRFNDCPRIM 202
K +I+ PL SVL L +N L AG+ + P++
Sbjct: 73 TKAAKFQISFHSIQMESPPLVKAAASVLKELCYNNKEEL---QAGFITAGWDRKKGPQVY 129
Query: 203 QI--------NKFTILGAGND----YADFQYLNDIVKQKIL 231
+ FTI G+G+ YAD +Y D+ K++ L
Sbjct: 130 TVALGGMLLSQPFTIGGSGSTYIYGYADAKYKPDMSKEECL 170
>sp|Q7DLS1|PSB7B_ARATH Proteasome subunit beta type-7-B OS=Arabidopsis thaliana GN=PBB2
PE=1 SV=2
Length = 274
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 48/88 (54%), Gaps = 8/88 (9%)
Query: 149 DFQYLNDIVKQK--ITP--LTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRI--M 202
D ND++ QK P L TGT+++GL+F GVIL AD+ G ++ +C +I M
Sbjct: 17 DLCKRNDMLTQKGLKAPSFLKTGTTIVGLIFKDGVILGADTRATEGPIVADKNCEKIHYM 76
Query: 203 QINKFTILGAGNDYADFQYLNDIVKQKI 230
N + GAG AD + + D+V ++
Sbjct: 77 APNIY-CCGAGT-AADTEAVTDMVSSQL 102
Score = 41.2 bits (95), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 40/69 (57%), Gaps = 4/69 (5%)
Query: 95 LTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRI--MQINKFTILGAGNDYADFQY 152
L TGT+++GL+F GVIL AD+ G ++ +C +I M N + GAG AD +
Sbjct: 36 LKTGTTIVGLIFKDGVILGADTRATEGPIVADKNCEKIHYMAPNIY-CCGAGT-AADTEA 93
Query: 153 LNDIVKQKI 161
+ D+V ++
Sbjct: 94 VTDMVSSQL 102
>sp|O23710|PSB7A_ARATH Proteasome subunit beta type-7-A OS=Arabidopsis thaliana GN=PBB1
PE=1 SV=2
Length = 273
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 48/88 (54%), Gaps = 8/88 (9%)
Query: 149 DFQYLNDIVKQK--ITP--LTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRI--M 202
D ND++ QK P L TGT+++GL+F GVIL AD+ G ++ +C +I M
Sbjct: 17 DLCKRNDMLTQKGLKAPSFLKTGTTIVGLIFKDGVILGADTRATEGPIVADKNCEKIHYM 76
Query: 203 QINKFTILGAGNDYADFQYLNDIVKQKI 230
N + GAG AD + + D+V ++
Sbjct: 77 APNIY-CCGAGT-AADTEAVTDMVSSQL 102
Score = 41.2 bits (95), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 40/69 (57%), Gaps = 4/69 (5%)
Query: 95 LTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRI--MQINKFTILGAGNDYADFQY 152
L TGT+++GL+F GVIL AD+ G ++ +C +I M N + GAG AD +
Sbjct: 36 LKTGTTIVGLIFKDGVILGADTRATEGPIVADKNCEKIHYMAPNIY-CCGAGT-AADTEA 93
Query: 153 LNDIVKQKI 161
+ D+V ++
Sbjct: 94 VTDMVSSQL 102
>sp|P25043|PSB2_YEAST Proteasome subunit beta type-2 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=PUP1 PE=1 SV=1
Length = 261
Score = 42.4 bits (98), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
Query: 77 FPNVLPHYFRRSGSFSTP--LTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQ 134
F N + F S + P +TGT+++G+ FN GV++AAD+ G ++ +C ++ +
Sbjct: 6 FDNYQRNNFLAENSHTQPKATSTGTTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHR 65
Query: 135 IN-KFTILGAGNDYADFQYLNDIVKQKI 161
I+ K GAG AD + + ++ I
Sbjct: 66 ISPKIWCAGAGT-AADTEAVTQLIGSNI 92
Score = 41.6 bits (96), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 54/99 (54%), Gaps = 8/99 (8%)
Query: 143 AGNDYADFQYLNDIVKQKIT---PLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCP 199
AG + ++Q N + + T +TGT+++G+ FN GV++AAD+ G ++ +C
Sbjct: 2 AGLSFDNYQRNNFLAENSHTQPKATSTGTTIVGVKFNNGVVIAADTRSTQGPIVADKNCA 61
Query: 200 RIMQIN-KFTILGAGNDYADFQYLNDIVKQKILDDDLHN 237
++ +I+ K GAG AD + + ++ I +LH+
Sbjct: 62 KLHRISPKIWCAGAGT-AADTEAVTQLIGSNI---ELHS 96
>sp|D1BHT9|PSB_SANKS Proteasome subunit beta OS=Sanguibacter keddieii (strain ATCC 51767
/ DSM 10542 / NCFB 3025 / ST-74) GN=prcB PE=3 SV=1
Length = 285
Score = 41.6 bits (96), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 75 HDFPNVLPHYFRRSGSFSTPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQ 134
HD P++LP + P GT+++ F+GGV++A D GSM+ + ++
Sbjct: 28 HD-PSLLPSSRALPAGSAPPAPHGTTIVAATFDGGVVVAGDRRATSGSMIAHREIEKVFA 86
Query: 135 INKFTILG 142
++F+ +G
Sbjct: 87 ADEFSAVG 94
Score = 37.4 bits (85), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 28/49 (57%)
Query: 163 PLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILG 211
P GT+++ F+GGV++A D GSM+ + ++ ++F+ +G
Sbjct: 46 PAPHGTTIVAATFDGGVVVAGDRRATSGSMIAHREIEKVFAADEFSAVG 94
>sp|Q74MP5|PSB_NANEQ Proteasome subunit beta OS=Nanoarchaeum equitans (strain Kin4-M)
GN=psmB PE=3 SV=1
Length = 196
Score = 41.6 bits (96), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 55/112 (49%), Gaps = 3/112 (2%)
Query: 168 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVK 227
T+++G+ GV+LA+D G+++ +I+ I + +L AD Q++ I+K
Sbjct: 2 TTIIGIKARDGVVLASDKQASMGNIVEDKRAQKIIPITDYILLAGSGTVADLQHIAKILK 61
Query: 228 QKILDDDLHNDGFVLKPKSLHSWLTRVLYNRRSQFDPLWINAFVAGMQNGEP 279
++ +L++ + + L+ +LY R +PL + +AG N +
Sbjct: 62 TELKLRELYSR-RTMNVIEAANLLSHLLYQNRFYLNPLGL--LIAGPINSKE 110
Score = 37.0 bits (84), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 34/63 (53%)
Query: 99 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVK 158
T+++G+ GV+LA+D G+++ +I+ I + +L AD Q++ I+K
Sbjct: 2 TTIIGIKARDGVVLASDKQASMGNIVEDKRAQKIIPITDYILLAGSGTVADLQHIAKILK 61
Query: 159 QKI 161
++
Sbjct: 62 TEL 64
>sp|Q980L4|PSB1_SULSO Proteasome subunit beta 1 OS=Sulfolobus solfataricus (strain ATCC
35092 / DSM 1617 / JCM 11322 / P2) GN=psmB1 PE=3 SV=1
Length = 196
Score = 40.0 bits (92), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 8/95 (8%)
Query: 168 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVK 227
+ +GL N G++LA++ YG + ++ +INKF + GAG Y D Q L I+
Sbjct: 6 ATAVGLKVNDGIVLASERRLSYGGYVLSKQAKKVYKINKFLMAGAGI-YGDLQTLTRIMN 64
Query: 228 QKILDDDLHNDGFVLKPKSLHS---WLTRVLYNRR 259
+I ++ KP S+H+ L+ +LY +
Sbjct: 65 VEIKYYEVSTG----KPISVHAAAKLLSVILYQYK 95
Score = 37.7 bits (86), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 3/74 (4%)
Query: 99 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDI-- 156
+ +GL N G++LA++ YG + ++ +INKF + GAG Y D Q L I
Sbjct: 6 ATAVGLKVNDGIVLASERRLSYGGYVLSKQAKKVYKINKFLMAGAGI-YGDLQTLTRIMN 64
Query: 157 VKQKITPLTTGTSV 170
V+ K ++TG +
Sbjct: 65 VEIKYYEVSTGKPI 78
Score = 34.3 bits (77), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 2 LGTVDKLGTAYEDKILSFGFGTHIAVPLLRQETEKNPQMSKEEAIALIKTCMDLLYVRDA 61
L +D +G+ ED + G G IA+ +L E+E +P MS + A LI + RD
Sbjct: 115 LYVLDPIGSLIEDNYAAVGSGARIAIGVL--ESEYDPNMSLDVATQLITKAIKASIERDI 172
Query: 62 RSG 64
SG
Sbjct: 173 TSG 175
>sp|D0KRX1|PSB1_SULS9 Proteasome subunit beta 1 OS=Sulfolobus solfataricus (strain 98/2)
GN=psmB1 PE=3 SV=1
Length = 196
Score = 40.0 bits (92), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 8/95 (8%)
Query: 168 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVK 227
+ +GL N G++LA++ YG + ++ +INKF + GAG Y D Q L I+
Sbjct: 6 ATAVGLKVNDGIVLASERRLSYGGYVLSKQAKKVYKINKFLMAGAGI-YGDLQTLTRIMN 64
Query: 228 QKILDDDLHNDGFVLKPKSLHS---WLTRVLYNRR 259
+I ++ KP S+H+ L+ +LY +
Sbjct: 65 VEIKYYEVSTG----KPISVHAAAKLLSVILYQYK 95
Score = 37.7 bits (86), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 3/74 (4%)
Query: 99 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDI-- 156
+ +GL N G++LA++ YG + ++ +INKF + GAG Y D Q L I
Sbjct: 6 ATAVGLKVNDGIVLASERRLSYGGYVLSKQAKKVYKINKFLMAGAGI-YGDLQTLTRIMN 64
Query: 157 VKQKITPLTTGTSV 170
V+ K ++TG +
Sbjct: 65 VEIKYYEVSTGKPI 78
Score = 34.3 bits (77), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 2 LGTVDKLGTAYEDKILSFGFGTHIAVPLLRQETEKNPQMSKEEAIALIKTCMDLLYVRDA 61
L +D +G+ ED + G G IA+ +L E+E +P MS + A LI + RD
Sbjct: 115 LYVLDPIGSLIEDNYAAVGSGARIAIGVL--ESEYDPNMSLDVATQLITKAIKASIERDI 172
Query: 62 RSG 64
SG
Sbjct: 173 TSG 175
>sp|Q9IB83|PSB1B_CARAU Proteasome subunit beta type-1-B OS=Carassius auratus GN=psmb1-B
PE=2 SV=1
Length = 237
Score = 40.0 bits (92), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 30/134 (22%), Positives = 62/134 (46%), Gaps = 5/134 (3%)
Query: 142 GAGNDYADFQYLNDIVKQKITPLT-TGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPR 200
GA D+ Y + V+ K +P G +VL + ++A+D+ G + D P+
Sbjct: 8 GANGKMKDYHY-SGPVEHKFSPYAFNGGTVLAVAGEDFALVASDTRLSEGYSIHSRDSPK 66
Query: 201 IMQINKFTILGAGNDYADFQYLNDIVKQKILDDDLHNDGFVLKPKSLHSWLTRVLYNRRS 260
++ T++G + D L I++ + L H++ + ++ + L+ +LY RR
Sbjct: 67 CYKLTDTTVIGCSGFHGDCLTLTKIIEAR-LKMYKHSNNKSMTSGAIAAMLSTILYGRR- 124
Query: 261 QFDPLWINAFVAGM 274
F P ++ + G+
Sbjct: 125 -FFPYYVYNIIGGL 137
>sp|A4YJ04|PSB2_METS5 Proteasome subunit beta 2 OS=Metallosphaera sedula (strain ATCC
51363 / DSM 5348) GN=psmB2 PE=3 SV=1
Length = 196
Score = 39.7 bits (91), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 52/112 (46%), Gaps = 4/112 (3%)
Query: 168 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVK 227
++ +G+ GVIL A YG + ++ I++F I GAG + D Q L I+
Sbjct: 6 STAVGIRLQDGVILGAVRRLSYGGYVLSKSAKKVFPISRFGIGGAGL-FGDLQALTRIMN 64
Query: 228 QKILDDDLHNDGFVLKPKSLHSWLTRVLYNRRSQFDPLWINAFVAGMQNGEP 279
I +L+N+ + ++ L+ +LY + + P G+ NGEP
Sbjct: 65 ANIKYYELYNNRPI-STRAAAKLLSIILYQYK--YMPFISEVLFGGVDNGEP 113
>sp|Q8SQN7|PSB2_ENCCU Probable proteasome subunit beta type-2 OS=Encephalitozoon cuniculi
(strain GB-M1) GN=PUP1 PE=1 SV=1
Length = 227
Score = 39.7 bits (91), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 97 TGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQI-NKFTILGAGN 145
TGT+++G+ + GVILAAD+ G ++ +C +I QI +K GAG
Sbjct: 5 TGTTIVGMKYKTGVILAADTRSTQGPVVSDKNCVKIHQITDKIMCCGAGT 54
Score = 39.7 bits (91), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 166 TGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQI-NKFTILGAGN 214
TGT+++G+ + GVILAAD+ G ++ +C +I QI +K GAG
Sbjct: 5 TGTTIVGMKYKTGVILAADTRSTQGPVVSDKNCVKIHQITDKIMCCGAGT 54
>sp|Q9IB84|PSB1A_CARAU Proteasome subunit beta type-1-A OS=Carassius auratus GN=psmb1-A
PE=2 SV=1
Length = 238
Score = 39.7 bits (91), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 30/134 (22%), Positives = 61/134 (45%), Gaps = 5/134 (3%)
Query: 142 GAGNDYADFQYLNDIVKQKITPLT-TGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPR 200
GA D+ Y V+ K +P G +VL + ++A+D+ G + D P+
Sbjct: 9 GANGRMKDYHYTGP-VEHKFSPYAFNGGTVLAVAGEDFALVASDTRLSEGYSIHSRDSPK 67
Query: 201 IMQINKFTILGAGNDYADFQYLNDIVKQKILDDDLHNDGFVLKPKSLHSWLTRVLYNRRS 260
++ T++G + D L I++ + L H++ + ++ + L+ +LY RR
Sbjct: 68 CYKLTDTTVIGCSGFHGDCLTLTKIIEAR-LKMYKHSNNKSMTSGAIAAMLSTILYGRR- 125
Query: 261 QFDPLWINAFVAGM 274
F P ++ + G+
Sbjct: 126 -FFPYYVYNIIGGL 138
>sp|O24361|PSB5_SPIOL Proteasome subunit beta type-5 OS=Spinacia oleracea PE=2 SV=1
Length = 272
Score = 39.7 bits (91), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 52/131 (39%), Gaps = 4/131 (3%)
Query: 149 DFQYLNDIVKQKITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFT 208
DF Q + P GT+ L +F GV++AADS G + +I++IN +
Sbjct: 38 DFDGFQKEAVQMVKP-AKGTTTLAFIFKHGVMVAADSRASMGGYISSQSVKKIIEINPYM 96
Query: 209 ILGAGNDYADFQYLNDIVKQKILDDDLHNDGFVLKPKSLHSWLTRVLYNRRSQFDPLWIN 268
+ AD Q+ + + K +L N + L +LYN R L +
Sbjct: 97 LGTMAGGAADCQFWHRNLGIKCRLHELANKRRI-SVTGASKLLANILYNYRGM--GLSVG 153
Query: 269 AFVAGMQNGEP 279
+AG P
Sbjct: 154 TMIAGWDETGP 164
Score = 34.7 bits (78), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 29/57 (50%)
Query: 98 GTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLN 154
GT+ L +F GV++AADS G + +I++IN + + AD Q+ +
Sbjct: 55 GTTTLAFIFKHGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWH 111
>sp|Q5V1D4|PSA2_HALMA Proteasome subunit alpha 2 OS=Haloarcula marismortui (strain ATCC
43049 / DSM 3752 / JCM 8966 / VKM B-1809) GN=psmA2 PE=3
SV=1
Length = 244
Score = 39.3 bits (90), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 32/136 (23%), Positives = 64/136 (47%), Gaps = 19/136 (13%)
Query: 150 FQYLNDIVKQKITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTI 209
+Y + VK+ GT+ +G+ GV++AAD ++ + +I +I+
Sbjct: 25 VEYAREAVKR-------GTASVGVRTEDGVVIAADRHAR-SPLIERDSIEKIHEIDSHVG 76
Query: 210 LGAGNDYADFQYLNDIVKQKILDDDLHNDGFVLKPKSLHSWLTRVLYNRRSQFD------ 263
+ + AD + L D+ +++ + L D +P S+ S LT+ + + Q+
Sbjct: 77 VASAGHVADARQLIDVARRQSQVNRLRYD----EPASVES-LTKEITDYIQQYTQTGGAR 131
Query: 264 PLWINAFVAGMQNGEP 279
P + VAG+++GEP
Sbjct: 132 PFGVALLVAGIEDGEP 147
>sp|A8LH54|PSB_FRASN Proteasome subunit beta OS=Frankia sp. (strain EAN1pec) GN=prcB
PE=3 SV=1
Length = 274
Score = 38.9 bits (89), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 11/82 (13%)
Query: 69 PSLGKYHDF-----PNVLPHYFRRSGSFSTPLTT---GTSVLGLVFNGGVILAADSAGYY 120
P + DF P++LP G P+T GT+++ + F GGVI+A D
Sbjct: 18 PGTSSFTDFLSVAAPDLLPGA---RGPLPAPVTDAAHGTTIVAVAFPGGVIMAGDRRATQ 74
Query: 121 GSMMRFNDCPRIMQINKFTILG 142
G M+ D ++ ++F+ +G
Sbjct: 75 GHMIAQRDVEKVHHADEFSCVG 96
Score = 36.6 bits (83), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 28/51 (54%)
Query: 161 ITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILG 211
+T GT+++ + F GGVI+A D G M+ D ++ ++F+ +G
Sbjct: 46 VTDAAHGTTIVAVAFPGGVIMAGDRRATQGHMIAQRDVEKVHHADEFSCVG 96
>sp|Q8LD27|PSB6_ARATH Proteasome subunit beta type-6 OS=Arabidopsis thaliana GN=PBA1 PE=1
SV=2
Length = 233
Score = 38.9 bits (89), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 35/69 (50%)
Query: 90 SFSTPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYAD 149
+ P + GT+++G+ +NGGV+L ADS G + +I Q+ + AD
Sbjct: 4 NLDAPHSMGTTIIGVTYNGGVVLGADSRTSTGMYVANRASDKITQLTDNVYVCRSGSAAD 63
Query: 150 FQYLNDIVK 158
Q ++D V+
Sbjct: 64 SQVVSDYVR 72
Score = 38.9 bits (89), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 34/65 (52%)
Query: 163 PLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYL 222
P + GT+++G+ +NGGV+L ADS G + +I Q+ + AD Q +
Sbjct: 8 PHSMGTTIIGVTYNGGVVLGADSRTSTGMYVANRASDKITQLTDNVYVCRSGSAADSQVV 67
Query: 223 NDIVK 227
+D V+
Sbjct: 68 SDYVR 72
>sp|P93395|PSB6_TOBAC Proteasome subunit beta type-6 OS=Nicotiana tabacum PE=2 SV=1
Length = 234
Score = 38.9 bits (89), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 34/65 (52%)
Query: 94 PLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYL 153
P + GT+++G+ +NGGV+L ADS G + +I Q+ + AD Q +
Sbjct: 9 PHSMGTTIIGVTYNGGVVLGADSRTSTGMYVANRASDKITQLTDNVYVCRSGSAADSQIV 68
Query: 154 NDIVK 158
+D V+
Sbjct: 69 SDYVR 73
Score = 38.9 bits (89), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 34/65 (52%)
Query: 163 PLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYL 222
P + GT+++G+ +NGGV+L ADS G + +I Q+ + AD Q +
Sbjct: 9 PHSMGTTIIGVTYNGGVVLGADSRTSTGMYVANRASDKITQLTDNVYVCRSGSAADSQIV 68
Query: 223 NDIVK 227
+D V+
Sbjct: 69 SDYVR 73
>sp|O23717|PSB5A_ARATH Proteasome subunit beta type-5-A OS=Arabidopsis thaliana GN=PBE1
PE=1 SV=1
Length = 274
Score = 38.5 bits (88), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 59/152 (38%), Gaps = 19/152 (12%)
Query: 128 DCPRIMQINKFTILGAGNDYADFQYLNDIVKQKITPLTTGTSVLGLVFNGGVILAADSAG 187
D PR + + F + D++K GT+ L +F GGV++AADS
Sbjct: 34 DLPRTKEFDGFQ-----------KKAKDMLKH-----AKGTTTLAFIFKGGVMVAADSRA 77
Query: 188 YYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDLHNDGFVLKPKSL 247
G + +I++IN + + AD Q+ + + K +L N +
Sbjct: 78 SMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANK-RRISVSGA 136
Query: 248 HSWLTRVLYNRRSQFDPLWINAFVAGMQNGEP 279
L +LY+ R L + +AG P
Sbjct: 137 SKLLANMLYSYRGM--GLSVGTMIAGWDETGP 166
Score = 37.7 bits (86), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 30/57 (52%)
Query: 98 GTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLN 154
GT+ L +F GGV++AADS G + +I++IN + + AD Q+ +
Sbjct: 57 GTTTLAFIFKGGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWH 113
>sp|P40306|PSB10_HUMAN Proteasome subunit beta type-10 OS=Homo sapiens GN=PSMB10 PE=1 SV=1
Length = 273
Score = 38.1 bits (87), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 7/91 (7%)
Query: 166 TGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQIN-KFTILGAGNDYADFQYLND 224
TGT++ GLVF GVIL AD+ S++ C +I I K GAG AD +
Sbjct: 38 TGTTIAGLVFQDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGV-AADAEMTTR 96
Query: 225 IVKQKILDDDLHNDGFVLKPKSLHSWLTRVL 255
+V K+ +LH +P+ + +TR+L
Sbjct: 97 MVASKM---ELHALSTGREPRV--ATVTRIL 122
Score = 36.6 bits (83), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 39/74 (52%), Gaps = 4/74 (5%)
Query: 97 TGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQIN-KFTILGAGNDYADFQYLND 155
TGT++ GLVF GVIL AD+ S++ C +I I K GAG AD +
Sbjct: 38 TGTTIAGLVFQDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGV-AADAEMTTR 96
Query: 156 IV--KQKITPLTTG 167
+V K ++ L+TG
Sbjct: 97 MVASKMELHALSTG 110
>sp|B8H8L6|PSB_ARTCA Proteasome subunit beta OS=Arthrobacter chlorophenolicus (strain A6
/ ATCC 700700 / DSM 12829 / JCM 12360) GN=prcB PE=3 SV=1
Length = 273
Score = 38.1 bits (87), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 40/73 (54%), Gaps = 8/73 (10%)
Query: 76 DFPNVLPHYFRRSG----SFSTPLTT--GTSVLGLVFNGGVILAADSAGYYGSMMRFNDC 129
D P +LP F RSG + + PL T+++ + +NGGV++A D G+++
Sbjct: 24 DRPELLP--FNRSGQGSATAAAPLQVPHATTIVAMSYNGGVLMAGDRRATMGNVIASRHI 81
Query: 130 PRIMQINKFTILG 142
++ +++++LG
Sbjct: 82 EKVFPADRYSVLG 94
Score = 31.6 bits (70), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 10/44 (22%), Positives = 27/44 (61%)
Query: 168 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILG 211
T+++ + +NGGV++A D G+++ ++ +++++LG
Sbjct: 51 TTIVAMSYNGGVLMAGDRRATMGNVIASRHIEKVFPADRYSVLG 94
>sp|P20618|PSB1_HUMAN Proteasome subunit beta type-1 OS=Homo sapiens GN=PSMB1 PE=1 SV=2
Length = 241
Score = 38.1 bits (87), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 52/111 (46%), Gaps = 13/111 (11%)
Query: 174 VFNGGVILA----------ADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLN 223
VFNGG ILA +D+ G + D P+ ++ T++G + D L
Sbjct: 34 VFNGGTILAIAGEDFAIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLT 93
Query: 224 DIVKQKILDDDLHNDGFVLKPKSLHSWLTRVLYNRRSQFDPLWINAFVAGM 274
I++ + L H++ + ++ + L+ +LY+RR F P ++ + G+
Sbjct: 94 KIIEAR-LKMYKHSNNKAMTTGAIAAMLSTILYSRR--FFPYYVYNIIGGL 141
>sp|A3CUS9|PSB_METMJ Proteasome subunit beta OS=Methanoculleus marisnigri (strain ATCC
35101 / DSM 1498 / JR1) GN=psmB PE=3 SV=1
Length = 214
Score = 38.1 bits (87), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 33/67 (49%)
Query: 92 STPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQ 151
S + GT+ +GL+F+GGV+LA + G+M+ +I QI L D Q
Sbjct: 5 SQEIMKGTTTVGLIFDGGVVLATEMRATMGNMIASKRAKKIYQITPRIGLTTAGGVGDAQ 64
Query: 152 YLNDIVK 158
L I++
Sbjct: 65 QLVRILQ 71
Score = 37.0 bits (84), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 31/61 (50%)
Query: 167 GTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIV 226
GT+ +GL+F+GGV+LA + G+M+ +I QI L D Q L I+
Sbjct: 11 GTTTVGLIFDGGVVLATEMRATMGNMIASKRAKKIYQITPRIGLTTAGGVGDAQQLVRIL 70
Query: 227 K 227
+
Sbjct: 71 Q 71
>sp|C3N7K2|PSB2_SULIY Proteasome subunit beta 2 OS=Sulfolobus islandicus (strain
Y.G.57.14 / Yellowstone #1) GN=psmB2 PE=3 SV=1
Length = 196
Score = 38.1 bits (87), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 8/95 (8%)
Query: 168 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVK 227
+ +GL N G++LA++ YG + ++ +I KF + GAG Y D Q L I+
Sbjct: 6 ATAIGLKVNDGIVLASERRLSYGGYVLSKQAKKVHKIGKFLMAGAGI-YGDLQTLTRIMN 64
Query: 228 QKILDDDLHNDGFVLKPKSLHS---WLTRVLYNRR 259
+I ++ KP S+H+ L+ +LY +
Sbjct: 65 VEIKYYEISTG----KPISVHAAAKLLSVILYQYK 95
Score = 36.2 bits (82), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
Query: 99 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDI-- 156
+ +GL N G++LA++ YG + ++ +I KF + GAG Y D Q L I
Sbjct: 6 ATAIGLKVNDGIVLASERRLSYGGYVLSKQAKKVHKIGKFLMAGAGI-YGDLQTLTRIMN 64
Query: 157 VKQKITPLTTGTSV 170
V+ K ++TG +
Sbjct: 65 VEIKYYEISTGKPI 78
Score = 32.0 bits (71), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 2 LGTVDKLGTAYEDKILSFGFGTHIAVPLLRQETEKNPQMSKEEAIALIKTCMDLLYVRDA 61
L +D +G+ ED + G G IA+ +L E+E +P M+ + A LI + RD
Sbjct: 115 LYVLDPIGSLIEDNYAAVGSGARIAIGVL--ESEYDPNMNLDIAAQLITKAIKASIERDI 172
Query: 62 RSG 64
SG
Sbjct: 173 TSG 175
>sp|C3MY41|PSB2_SULIM Proteasome subunit beta 2 OS=Sulfolobus islandicus (strain M.14.25
/ Kamchatka #1) GN=psmB2 PE=3 SV=1
Length = 196
Score = 38.1 bits (87), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 8/95 (8%)
Query: 168 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVK 227
+ +GL N G++LA++ YG + ++ +I KF + GAG Y D Q L I+
Sbjct: 6 ATAIGLKVNDGIVLASERRLSYGGYVLSKQAKKVHKIGKFLMAGAGI-YGDLQTLTRIMN 64
Query: 228 QKILDDDLHNDGFVLKPKSLHS---WLTRVLYNRR 259
+I ++ KP S+H+ L+ +LY +
Sbjct: 65 VEIKYYEISTG----KPISVHAAAKLLSVILYQYK 95
Score = 36.2 bits (82), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
Query: 99 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDI-- 156
+ +GL N G++LA++ YG + ++ +I KF + GAG Y D Q L I
Sbjct: 6 ATAIGLKVNDGIVLASERRLSYGGYVLSKQAKKVHKIGKFLMAGAGI-YGDLQTLTRIMN 64
Query: 157 VKQKITPLTTGTSV 170
V+ K ++TG +
Sbjct: 65 VEIKYYEISTGKPI 78
Score = 32.0 bits (71), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 2 LGTVDKLGTAYEDKILSFGFGTHIAVPLLRQETEKNPQMSKEEAIALIKTCMDLLYVRDA 61
L +D +G+ ED + G G IA+ +L E+E +P M+ + A LI + RD
Sbjct: 115 LYVLDPIGSLIEDNYAAVGSGARIAIGVL--ESEYDPNMNLDIAAQLITKAIKASIERDI 172
Query: 62 RSG 64
SG
Sbjct: 173 TSG 175
>sp|C3MRE5|PSB2_SULIL Proteasome subunit beta 2 OS=Sulfolobus islandicus (strain L.S.2.15
/ Lassen #1) GN=psmB2 PE=3 SV=1
Length = 196
Score = 38.1 bits (87), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 8/95 (8%)
Query: 168 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVK 227
+ +GL N G++LA++ YG + ++ +I KF + GAG Y D Q L I+
Sbjct: 6 ATAIGLKVNDGIVLASERRLSYGGYVLSKQAKKVHKIGKFLMAGAGI-YGDLQTLTRIMN 64
Query: 228 QKILDDDLHNDGFVLKPKSLHS---WLTRVLYNRR 259
+I ++ KP S+H+ L+ +LY +
Sbjct: 65 VEIKYYEISTG----KPISVHAAAKLLSVILYQYK 95
Score = 36.2 bits (82), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
Query: 99 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDI-- 156
+ +GL N G++LA++ YG + ++ +I KF + GAG Y D Q L I
Sbjct: 6 ATAIGLKVNDGIVLASERRLSYGGYVLSKQAKKVHKIGKFLMAGAGI-YGDLQTLTRIMN 64
Query: 157 VKQKITPLTTGTSV 170
V+ K ++TG +
Sbjct: 65 VEIKYYEISTGKPI 78
Score = 32.0 bits (71), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 2 LGTVDKLGTAYEDKILSFGFGTHIAVPLLRQETEKNPQMSKEEAIALIKTCMDLLYVRDA 61
L +D +G+ ED + G G IA+ +L E+E +P M+ + A LI + RD
Sbjct: 115 LYVLDPIGSLIEDNYAAVGSGARIAIGVL--ESEYDPNMNLDIAAQLITKAIKASIERDI 172
Query: 62 RSG 64
SG
Sbjct: 173 TSG 175
>sp|C4KIR0|PSB2_SULIK Proteasome subunit beta 2 OS=Sulfolobus islandicus (strain M.16.4 /
Kamchatka #3) GN=psmB2 PE=3 SV=1
Length = 196
Score = 38.1 bits (87), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 8/95 (8%)
Query: 168 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVK 227
+ +GL N G++LA++ YG + ++ +I KF + GAG Y D Q L I+
Sbjct: 6 ATAIGLKVNDGIVLASERRLSYGGYVLSKQAKKVHKIGKFLMAGAGI-YGDLQTLTRIMN 64
Query: 228 QKILDDDLHNDGFVLKPKSLHS---WLTRVLYNRR 259
+I ++ KP S+H+ L+ +LY +
Sbjct: 65 VEIKYYEISTG----KPISVHAAAKLLSVILYQYK 95
Score = 36.2 bits (82), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
Query: 99 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDI-- 156
+ +GL N G++LA++ YG + ++ +I KF + GAG Y D Q L I
Sbjct: 6 ATAIGLKVNDGIVLASERRLSYGGYVLSKQAKKVHKIGKFLMAGAGI-YGDLQTLTRIMN 64
Query: 157 VKQKITPLTTGTSV 170
V+ K ++TG +
Sbjct: 65 VEIKYYEISTGKPI 78
Score = 32.0 bits (71), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 2 LGTVDKLGTAYEDKILSFGFGTHIAVPLLRQETEKNPQMSKEEAIALIKTCMDLLYVRDA 61
L +D +G+ ED + G G IA+ +L E+E +P M+ + A LI + RD
Sbjct: 115 LYVLDPIGSLIEDNYAAVGSGARIAIGVL--ESEYDPNMNLDIAAQLITKAIKASIERDI 172
Query: 62 RSG 64
SG
Sbjct: 173 TSG 175
>sp|D2PDG6|PSB2_SULID Proteasome subunit beta 2 OS=Sulfolobus islandicus (strain L.D.8.5
/ Lassen #2) GN=psmB2 PE=3 SV=1
Length = 196
Score = 38.1 bits (87), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 8/95 (8%)
Query: 168 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVK 227
+ +GL N G++LA++ YG + ++ +I KF + GAG Y D Q L I+
Sbjct: 6 ATAIGLKVNDGIVLASERRLSYGGYVLSKQAKKVHKIGKFLMAGAGI-YGDLQTLTRIMN 64
Query: 228 QKILDDDLHNDGFVLKPKSLHS---WLTRVLYNRR 259
+I ++ KP S+H+ L+ +LY +
Sbjct: 65 VEIKYYEISTG----KPISVHAAAKLLSVILYQYK 95
Score = 36.2 bits (82), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
Query: 99 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDI-- 156
+ +GL N G++LA++ YG + ++ +I KF + GAG Y D Q L I
Sbjct: 6 ATAIGLKVNDGIVLASERRLSYGGYVLSKQAKKVHKIGKFLMAGAGI-YGDLQTLTRIMN 64
Query: 157 VKQKITPLTTGTSV 170
V+ K ++TG +
Sbjct: 65 VEIKYYEISTGKPI 78
Score = 32.0 bits (71), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 2 LGTVDKLGTAYEDKILSFGFGTHIAVPLLRQETEKNPQMSKEEAIALIKTCMDLLYVRDA 61
L +D +G+ ED + G G IA+ +L E+E +P M+ + A LI + RD
Sbjct: 115 LYVLDPIGSLIEDNYAAVGSGARIAIGVL--ESEYDPNMNLDIAAQLITKAIKASIERDI 172
Query: 62 RSG 64
SG
Sbjct: 173 TSG 175
>sp|C3MZI0|PSB2_SULIA Proteasome subunit beta 2 OS=Sulfolobus islandicus (strain M.16.27)
GN=psmB2 PE=3 SV=1
Length = 196
Score = 38.1 bits (87), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 8/95 (8%)
Query: 168 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVK 227
+ +GL N G++LA++ YG + ++ +I KF + GAG Y D Q L I+
Sbjct: 6 ATAIGLKVNDGIVLASERRLSYGGYVLSKQAKKVHKIGKFLMAGAGI-YGDLQTLTRIMN 64
Query: 228 QKILDDDLHNDGFVLKPKSLHS---WLTRVLYNRR 259
+I ++ KP S+H+ L+ +LY +
Sbjct: 65 VEIKYYEISTG----KPISVHAAAKLLSVILYQYK 95
Score = 36.2 bits (82), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
Query: 99 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDI-- 156
+ +GL N G++LA++ YG + ++ +I KF + GAG Y D Q L I
Sbjct: 6 ATAIGLKVNDGIVLASERRLSYGGYVLSKQAKKVHKIGKFLMAGAGI-YGDLQTLTRIMN 64
Query: 157 VKQKITPLTTGTSV 170
V+ K ++TG +
Sbjct: 65 VEIKYYEISTGKPI 78
Score = 32.0 bits (71), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 2 LGTVDKLGTAYEDKILSFGFGTHIAVPLLRQETEKNPQMSKEEAIALIKTCMDLLYVRDA 61
L +D +G+ ED + G G IA+ +L E+E +P M+ + A LI + RD
Sbjct: 115 LYVLDPIGSLIEDNYAAVGSGARIAIGVL--ESEYDPNMNLDIAAQLITKAIKASIERDI 172
Query: 62 RSG 64
SG
Sbjct: 173 TSG 175
>sp|C3NFX2|PSB1_SULIN Proteasome subunit beta 1 OS=Sulfolobus islandicus (strain
Y.N.15.51 / Yellowstone #2) GN=psmB1 PE=3 SV=1
Length = 196
Score = 38.1 bits (87), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 8/95 (8%)
Query: 168 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVK 227
+ +GL N G++LA++ YG + ++ +I KF + GAG Y D Q L I+
Sbjct: 6 ATAIGLKVNDGIVLASERRLSYGGYVLSKQAKKVHKIGKFLMAGAGI-YGDLQTLTRIMN 64
Query: 228 QKILDDDLHNDGFVLKPKSLHS---WLTRVLYNRR 259
+I ++ KP S+H+ L+ +LY +
Sbjct: 65 VEIKYYEISTG----KPISVHAAAKLLSVILYQYK 95
Score = 36.2 bits (82), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
Query: 99 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDI-- 156
+ +GL N G++LA++ YG + ++ +I KF + GAG Y D Q L I
Sbjct: 6 ATAIGLKVNDGIVLASERRLSYGGYVLSKQAKKVHKIGKFLMAGAGI-YGDLQTLTRIMN 64
Query: 157 VKQKITPLTTGTSV 170
V+ K ++TG +
Sbjct: 65 VEIKYYEISTGKPI 78
Score = 32.0 bits (71), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 2 LGTVDKLGTAYEDKILSFGFGTHIAVPLLRQETEKNPQMSKEEAIALIKTCMDLLYVRDA 61
L +D +G+ ED + G G IA+ +L E+E +P M+ + A LI + RD
Sbjct: 115 LYVLDPIGSLIEDNYAAVGSGARIAIGVL--ESEYDPNMNLDIAAQLITKAIKASIERDI 172
Query: 62 RSG 64
SG
Sbjct: 173 TSG 175
>sp|Q0RLT7|PSB_FRAAA Proteasome subunit beta OS=Frankia alni (strain ACN14a) GN=prcB
PE=3 SV=2
Length = 274
Score = 37.7 bits (86), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 11/82 (13%)
Query: 69 PSLGKYHDF-----PNVLPHYFRRSGSFSTPLTT---GTSVLGLVFNGGVILAADSAGYY 120
P + DF P++LP G P+T GT+++ + F GGVI+A D
Sbjct: 18 PGTSSFTDFLSQSAPHLLPGA---RGGLPGPVTEVAHGTTIVAVTFPGGVIMAGDRRATQ 74
Query: 121 GSMMRFNDCPRIMQINKFTILG 142
G M+ D ++ + F+ +G
Sbjct: 75 GHMIAQRDVEKVHHADDFSCVG 96
Score = 37.0 bits (84), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 28/51 (54%)
Query: 161 ITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILG 211
+T + GT+++ + F GGVI+A D G M+ D ++ + F+ +G
Sbjct: 46 VTEVAHGTTIVAVTFPGGVIMAGDRRATQGHMIAQRDVEKVHHADDFSCVG 96
>sp|Q9YES4|PSB1_AERPE Proteasome subunit beta 1 OS=Aeropyrum pernix (strain ATCC 700893 /
DSM 11879 / JCM 9820 / NBRC 100138 / K1) GN=psmB1 PE=3
SV=2
Length = 203
Score = 37.4 bits (85), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 53/118 (44%), Gaps = 10/118 (8%)
Query: 166 TGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDI 225
G + LG+ GV+LAAD YG + + +I IN + Y D L I
Sbjct: 4 AGATALGIRVEDGVVLAADKRMSYGGFILSRNFKKIFVINDRIGIAFAGLYGDMGGLVRI 63
Query: 226 VKQKILDDDLHNDGFVLKP---KSLHSWLTRVLYNRRSQFDPLWINAFVAGMQ-NGEP 279
V+ ++ L KP +++ +L+ +LY+ + F P + A V G+ GEP
Sbjct: 64 VEGQMRLASLETG----KPATVRNVAKFLSSLLYSYK--FFPFNVEAIVGGIDPGGEP 115
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.140 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 112,509,450
Number of Sequences: 539616
Number of extensions: 4942997
Number of successful extensions: 11303
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 53
Number of HSP's that attempted gapping in prelim test: 10913
Number of HSP's gapped (non-prelim): 437
length of query: 279
length of database: 191,569,459
effective HSP length: 116
effective length of query: 163
effective length of database: 128,974,003
effective search space: 21022762489
effective search space used: 21022762489
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)