Query psy9489
Match_columns 279
No_of_seqs 353 out of 1756
Neff 7.6
Searched_HMMs 46136
Date Fri Aug 16 20:41:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9489.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9489hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0175|consensus 99.9 5.2E-28 1.1E-32 208.3 6.2 172 67-258 36-242 (285)
2 PTZ00488 Proteasome subunit be 99.9 1.1E-25 2.5E-30 200.2 12.3 172 70-259 4-211 (247)
3 COG0638 PRE1 20S proteasome, a 99.9 2.1E-24 4.5E-29 191.0 10.6 151 91-259 22-204 (236)
4 cd03757 proteasome_beta_type_1 99.9 7.6E-24 1.6E-28 184.6 11.7 150 92-259 1-190 (212)
5 KOG0185|consensus 99.9 5.2E-24 1.1E-28 181.5 10.3 118 160-277 34-151 (256)
6 cd03760 proteasome_beta_type_4 99.9 1.3E-23 2.8E-28 181.1 11.6 145 97-259 1-180 (197)
7 cd03761 proteasome_beta_type_5 99.9 2.2E-23 4.8E-28 178.4 11.7 143 99-259 1-172 (188)
8 cd03759 proteasome_beta_type_3 99.9 3.5E-23 7.5E-28 178.2 11.2 146 97-259 2-177 (195)
9 cd03750 proteasome_alpha_type_ 99.9 2.2E-23 4.7E-28 183.5 9.6 147 90-255 19-198 (227)
10 TIGR03634 arc_protsome_B prote 99.9 8E-23 1.7E-27 174.3 11.7 144 98-259 1-173 (185)
11 KOG0185|consensus 99.9 2.3E-23 5.1E-28 177.6 6.9 180 66-269 8-226 (256)
12 cd03752 proteasome_alpha_type_ 99.9 5.4E-23 1.2E-27 179.3 9.4 149 90-256 21-203 (213)
13 PRK05456 ATP-dependent proteas 99.9 1.5E-22 3.2E-27 170.6 10.7 139 98-259 1-165 (172)
14 cd03751 proteasome_alpha_type_ 99.9 7.1E-23 1.5E-27 178.5 9.0 145 90-253 22-199 (212)
15 cd03763 proteasome_beta_type_7 99.9 2.3E-22 5E-27 172.2 11.9 143 99-259 1-171 (189)
16 cd03758 proteasome_beta_type_2 99.9 2.2E-22 4.9E-27 172.9 11.8 142 99-258 2-175 (193)
17 cd03762 proteasome_beta_type_6 99.9 2.7E-22 5.8E-27 171.6 11.6 142 99-258 1-171 (188)
18 TIGR03690 20S_bact_beta protea 99.9 2E-22 4.4E-27 176.5 10.3 145 97-259 1-180 (219)
19 cd03764 proteasome_beta_archea 99.9 3.8E-22 8.3E-27 170.6 11.4 143 99-259 1-172 (188)
20 PTZ00246 proteasome subunit al 99.9 2.2E-22 4.7E-27 180.0 10.0 149 90-256 23-205 (253)
21 cd03756 proteasome_alpha_arche 99.9 1.7E-22 3.6E-27 176.0 8.5 147 90-255 20-199 (211)
22 cd01911 proteasome_alpha prote 99.9 2.3E-22 4.9E-27 174.9 9.3 147 90-255 19-199 (209)
23 KOG0174|consensus 99.9 5.3E-23 1.1E-27 170.9 4.0 147 93-257 14-189 (224)
24 cd03755 proteasome_alpha_type_ 99.9 3.8E-22 8.2E-27 173.3 9.5 144 90-252 19-196 (207)
25 KOG0179|consensus 99.9 4.5E-22 9.7E-27 167.2 9.1 166 74-259 6-213 (235)
26 TIGR03633 arc_protsome_A prote 99.9 5E-22 1.1E-26 174.5 9.7 148 90-257 21-201 (224)
27 KOG0177|consensus 99.9 9.1E-23 2E-27 168.9 4.5 76 1-78 114-197 (200)
28 PF00227 Proteasome: Proteasom 99.9 8.8E-22 1.9E-26 167.9 9.3 147 95-259 1-183 (190)
29 cd01913 protease_HslV Protease 99.9 1.9E-21 4.1E-26 163.1 10.1 138 99-259 1-164 (171)
30 cd03749 proteasome_alpha_type_ 99.9 1E-21 2.3E-26 171.1 8.6 144 90-254 19-197 (211)
31 cd03753 proteasome_alpha_type_ 99.9 1.2E-21 2.7E-26 170.8 8.4 145 90-253 19-201 (213)
32 TIGR03692 ATP_dep_HslV ATP-dep 99.9 3.9E-21 8.5E-26 161.1 10.8 139 99-259 1-164 (171)
33 PRK03996 proteasome subunit al 99.9 1.7E-21 3.6E-26 173.0 8.8 145 90-253 28-205 (241)
34 KOG0173|consensus 99.8 2.2E-21 4.9E-26 167.0 7.3 149 93-259 32-208 (271)
35 cd01912 proteasome_beta protea 99.8 1.2E-20 2.7E-25 161.1 11.3 142 99-258 1-172 (189)
36 cd03754 proteasome_alpha_type_ 99.8 4.3E-21 9.3E-26 167.7 8.4 148 90-256 20-206 (215)
37 cd03760 proteasome_beta_type_4 99.8 8.3E-20 1.8E-24 157.4 12.5 114 166-279 1-115 (197)
38 cd01906 proteasome_protease_Hs 99.8 5.3E-20 1.1E-24 155.9 10.9 141 99-257 1-173 (182)
39 TIGR03691 20S_bact_alpha prote 99.8 2.6E-20 5.6E-25 164.0 6.3 152 73-252 4-191 (228)
40 cd03750 proteasome_alpha_type_ 99.8 2.6E-19 5.7E-24 157.6 11.6 122 156-279 16-139 (227)
41 cd03759 proteasome_beta_type_3 99.8 4.3E-19 9.4E-24 152.7 12.5 111 166-279 2-113 (195)
42 KOG0176|consensus 99.8 8.2E-20 1.8E-24 152.4 7.1 148 90-256 26-211 (241)
43 cd03757 proteasome_beta_type_1 99.8 7.2E-19 1.6E-23 153.3 12.4 111 166-279 7-118 (212)
44 cd03761 proteasome_beta_type_5 99.8 1.1E-18 2.3E-23 149.4 13.0 109 168-279 1-109 (188)
45 TIGR03634 arc_protsome_B prote 99.8 1.2E-18 2.5E-23 148.6 12.7 110 167-279 1-110 (185)
46 cd03751 proteasome_alpha_type_ 99.8 9.4E-19 2E-23 152.6 11.2 122 156-279 19-142 (212)
47 PTZ00488 Proteasome subunit be 99.8 2.2E-18 4.9E-23 153.4 13.4 117 160-279 32-148 (247)
48 cd03755 proteasome_alpha_type_ 99.8 1.5E-18 3.2E-23 150.8 11.6 122 156-279 16-140 (207)
49 cd03765 proteasome_beta_bacter 99.8 1.3E-18 2.7E-23 153.7 11.1 140 99-258 1-189 (236)
50 cd03764 proteasome_beta_archea 99.8 2.8E-18 6.1E-23 146.7 12.7 109 168-279 1-109 (188)
51 COG0638 PRE1 20S proteasome, a 99.8 2.1E-18 4.6E-23 152.7 12.1 120 159-279 21-141 (236)
52 cd03756 proteasome_alpha_arche 99.8 2.7E-18 5.9E-23 149.5 11.6 122 156-279 17-140 (211)
53 TIGR03633 arc_protsome_A prote 99.8 3.1E-18 6.7E-23 150.4 11.6 122 156-279 18-141 (224)
54 cd03758 proteasome_beta_type_2 99.8 6.3E-18 1.4E-22 145.3 12.7 110 168-279 2-113 (193)
55 cd01911 proteasome_alpha prote 99.7 6.5E-18 1.4E-22 146.9 10.9 122 156-279 16-140 (209)
56 PRK03996 proteasome subunit al 99.7 8.6E-18 1.9E-22 149.2 11.5 122 156-279 25-148 (241)
57 cd03762 proteasome_beta_type_6 99.7 1.7E-17 3.7E-22 141.8 12.9 108 168-279 1-109 (188)
58 TIGR03690 20S_bact_beta protea 99.7 2.1E-17 4.5E-22 144.8 12.8 109 167-276 2-111 (219)
59 cd03754 proteasome_alpha_type_ 99.7 1.5E-17 3.2E-22 145.3 11.6 122 156-279 17-142 (215)
60 KOG0180|consensus 99.7 2.5E-18 5.4E-23 140.7 6.1 157 97-276 7-193 (204)
61 cd03752 proteasome_alpha_type_ 99.7 1.7E-17 3.6E-22 144.7 11.7 123 156-279 18-143 (213)
62 cd03749 proteasome_alpha_type_ 99.7 1.7E-17 3.8E-22 144.5 11.6 120 156-279 16-137 (211)
63 KOG0179|consensus 99.7 1.5E-17 3.3E-22 140.0 10.2 116 160-278 21-137 (235)
64 cd03763 proteasome_beta_type_7 99.7 4E-17 8.7E-22 139.7 12.6 108 168-279 1-108 (189)
65 cd03753 proteasome_alpha_type_ 99.7 3E-17 6.5E-22 143.1 11.5 122 156-279 16-144 (213)
66 PTZ00246 proteasome subunit al 99.7 3E-17 6.5E-22 146.8 11.7 123 156-279 20-145 (253)
67 cd01912 proteasome_beta protea 99.7 1.3E-16 2.8E-21 136.3 12.7 109 168-279 1-110 (189)
68 cd01906 proteasome_protease_Hs 99.7 3E-16 6.5E-21 132.8 12.6 111 168-279 1-112 (182)
69 PF00227 Proteasome: Proteasom 99.7 3.7E-16 8E-21 133.2 10.9 113 165-278 2-117 (190)
70 KOG0174|consensus 99.7 3.8E-16 8.2E-21 130.2 8.5 111 162-276 14-124 (224)
71 KOG0177|consensus 99.6 9.4E-16 2E-20 127.4 8.2 142 99-259 2-176 (200)
72 KOG0176|consensus 99.6 2E-15 4.4E-20 126.2 8.6 121 157-279 24-151 (241)
73 KOG0184|consensus 99.6 8.9E-15 1.9E-19 124.4 12.3 160 90-276 26-220 (254)
74 KOG0175|consensus 99.6 5.7E-15 1.2E-19 127.9 9.3 113 164-279 68-180 (285)
75 cd03765 proteasome_beta_bacter 99.6 2.4E-14 5.3E-19 126.5 12.5 109 169-279 2-124 (236)
76 KOG0184|consensus 99.6 9.4E-15 2E-19 124.2 9.3 133 143-279 12-146 (254)
77 KOG0178|consensus 99.6 3.4E-15 7.3E-20 126.0 5.4 146 90-253 23-203 (249)
78 KOG0181|consensus 99.5 4.1E-15 8.9E-20 124.1 4.6 145 88-251 22-199 (233)
79 TIGR03691 20S_bact_alpha prote 99.5 6.5E-14 1.4E-18 123.4 10.8 118 153-279 13-134 (228)
80 KOG0183|consensus 99.5 2E-14 4.4E-19 121.6 6.9 144 90-252 22-201 (249)
81 cd01901 Ntn_hydrolase The Ntn 99.5 8.2E-14 1.8E-18 114.2 10.1 131 99-247 1-162 (164)
82 KOG0180|consensus 99.5 1.9E-13 4E-18 112.2 9.0 111 166-279 7-118 (204)
83 KOG0178|consensus 99.4 1.7E-13 3.8E-18 115.7 7.3 119 157-277 21-142 (249)
84 KOG0183|consensus 99.4 4.7E-13 1E-17 113.4 7.1 128 147-278 12-141 (249)
85 cd01901 Ntn_hydrolase The Ntn 99.4 4.7E-12 1E-16 103.7 12.4 110 168-279 1-110 (164)
86 KOG0181|consensus 99.4 6E-13 1.3E-17 111.2 5.5 120 158-279 23-144 (233)
87 PRK05456 ATP-dependent proteas 99.3 1.2E-11 2.6E-16 104.3 11.8 100 167-274 1-101 (172)
88 cd01913 protease_HslV Protease 99.3 9E-12 2E-16 104.7 10.6 99 168-275 1-101 (171)
89 TIGR03692 ATP_dep_HslV ATP-dep 99.3 1.7E-11 3.7E-16 103.0 11.3 99 168-275 1-101 (171)
90 KOG0173|consensus 99.3 1.3E-11 2.7E-16 107.0 7.5 112 164-279 34-145 (271)
91 KOG0182|consensus 99.2 2.9E-11 6.4E-16 102.4 7.3 146 89-253 26-208 (246)
92 KOG0182|consensus 99.1 2.4E-10 5.2E-15 96.9 9.4 121 157-279 25-149 (246)
93 KOG0863|consensus 99.1 2.9E-10 6.4E-15 97.5 7.9 120 156-279 21-142 (264)
94 KOG0863|consensus 99.0 4.5E-10 9.7E-15 96.4 7.0 160 90-276 24-219 (264)
95 COG5405 HslV ATP-dependent pro 98.3 1E-06 2.2E-11 72.2 5.4 126 97-231 3-142 (178)
96 COG5405 HslV ATP-dependent pro 96.3 0.0057 1.2E-07 50.5 4.4 66 166-231 3-69 (178)
97 COG3484 Predicted proteasome-t 79.0 4.9 0.00011 34.8 5.3 62 169-231 3-68 (255)
98 KOG2848|consensus 74.3 4 8.7E-05 36.6 3.7 57 40-111 143-199 (276)
99 PF04485 NblA: Phycobilisome d 73.0 5.5 0.00012 26.9 3.3 33 25-60 10-42 (53)
100 KOG1930|consensus 71.5 2.3 4.9E-05 40.5 1.6 19 32-51 212-230 (483)
101 COG3484 Predicted proteasome-t 70.3 4.6 0.0001 34.9 3.1 60 99-159 2-65 (255)
102 PHA02823 chemokine binding pro 65.3 3.7 8.1E-05 35.5 1.6 31 29-59 131-162 (255)
103 PF09894 DUF2121: Uncharacteri 65.1 8.3 0.00018 33.0 3.6 34 24-59 131-164 (194)
104 PF09999 DUF2240: Uncharacteri 59.8 6.3 0.00014 32.3 1.9 23 30-57 29-51 (144)
105 PF02022 Integrase_Zn: Integra 51.3 12 0.00025 23.8 1.7 20 29-52 14-33 (40)
106 PF10655 DUF2482: Hypothetical 50.1 13 0.00028 28.0 2.0 20 38-57 6-25 (100)
107 PRK10465 hydrogenase 2-specifi 49.5 20 0.00044 29.8 3.3 42 20-66 101-142 (159)
108 PF13368 Toprim_C_rpt: Topoiso 47.6 15 0.00033 25.3 2.0 33 13-50 14-46 (61)
109 PF02885 Glycos_trans_3N: Glyc 46.1 20 0.00043 24.9 2.4 27 27-54 3-29 (66)
110 PF09894 DUF2121: Uncharacteri 45.9 14 0.00031 31.6 2.0 19 100-118 3-21 (194)
111 PF02563 Poly_export: Polysacc 44.6 11 0.00023 27.5 0.9 36 22-60 38-73 (82)
112 PF10397 ADSL_C: Adenylosuccin 43.8 27 0.00058 25.3 2.9 35 22-58 2-36 (81)
113 PF05924 SAMP: SAMP Motif; In 43.2 18 0.0004 19.3 1.4 8 47-54 4-11 (20)
114 PF04839 PSRP-3_Ycf65: Plastid 42.3 33 0.00072 22.7 2.8 30 29-58 15-44 (49)
115 KOG3466|consensus 40.9 45 0.00098 27.1 3.9 46 29-81 43-88 (157)
116 PF04064 DUF384: Domain of unk 36.8 48 0.001 22.7 3.1 29 26-57 20-48 (58)
117 PF08269 Cache_2: Cache domain 34.7 27 0.00058 25.8 1.7 35 25-59 18-54 (95)
118 COG3937 Uncharacterized conser 33.4 59 0.0013 25.2 3.4 28 29-57 29-56 (108)
119 PF03672 UPF0154: Uncharacteri 32.7 42 0.00091 23.6 2.3 28 22-49 14-41 (64)
120 PF14591 AF0941-like: AF0941-l 32.2 43 0.00094 26.7 2.6 21 29-51 49-69 (127)
121 TIGR01255 pyr_form_ly_1 format 32.0 46 0.001 34.5 3.4 44 7-51 247-292 (744)
122 PF02609 Exonuc_VII_S: Exonucl 30.7 63 0.0014 21.4 2.9 21 37-57 17-37 (53)
123 PF11939 DUF3457: Protein of u 30.5 37 0.00079 28.2 2.0 36 20-58 93-128 (155)
124 smart00252 SH2 Src homology 2 30.0 26 0.00057 25.0 1.0 14 38-51 6-19 (84)
125 PRK14065 exodeoxyribonuclease 29.5 79 0.0017 23.4 3.4 28 29-58 37-64 (86)
126 PF00887 ACBP: Acyl CoA bindin 29.3 57 0.0012 23.9 2.7 26 32-57 58-83 (87)
127 PF00017 SH2: SH2 domain; Int 29.1 22 0.00048 24.9 0.4 41 38-108 4-44 (77)
128 PRK01844 hypothetical protein; 26.9 56 0.0012 23.5 2.1 28 22-49 21-48 (72)
129 cd00173 SH2 Src homology 2 dom 26.9 35 0.00075 24.7 1.2 14 38-51 5-18 (94)
130 cd01678 PFL1 Pyruvate formate 26.1 58 0.0012 33.9 2.9 43 7-50 249-293 (738)
131 PF11417 Inhibitor_G39P: Loade 25.4 47 0.001 23.8 1.6 10 40-49 1-10 (71)
132 PRK00523 hypothetical protein; 25.4 62 0.0014 23.2 2.1 28 22-49 22-49 (72)
133 KOG3361|consensus 24.0 60 0.0013 26.2 2.1 43 5-49 73-115 (157)
134 PF08232 Striatin: Striatin fa 23.6 52 0.0011 26.5 1.7 21 38-58 107-127 (134)
135 PF07087 DUF1353: Protein of u 23.2 1.2E+02 0.0026 22.9 3.5 36 22-57 44-82 (95)
136 PRK09570 rpoH DNA-directed RNA 23.0 64 0.0014 23.6 1.9 13 39-51 17-29 (79)
137 smart00389 HOX Homeodomain. DN 22.5 1.1E+02 0.0024 19.6 2.9 27 26-52 11-37 (56)
138 cd00435 ACBP Acyl CoA binding 22.5 1E+02 0.0023 22.6 3.0 25 33-57 57-81 (85)
139 PF03861 ANTAR: ANTAR domain; 21.3 1.1E+02 0.0023 20.4 2.7 15 39-53 27-41 (56)
140 PF11469 Ribonucleas_3_2: Ribo 21.2 65 0.0014 24.9 1.7 26 27-53 63-88 (120)
141 PF07499 RuvA_C: RuvA, C-termi 21.1 58 0.0013 21.0 1.2 34 19-56 13-46 (47)
142 PF02042 RWP-RK: RWP-RK domain 21.1 67 0.0015 21.5 1.5 36 23-63 3-38 (52)
143 PRK14068 exodeoxyribonuclease 21.0 1.2E+02 0.0027 21.9 3.1 19 37-55 24-42 (76)
144 PF12668 DUF3791: Protein of u 20.9 77 0.0017 21.7 1.9 25 26-51 4-28 (62)
145 KOG3997|consensus 20.9 80 0.0017 27.9 2.4 31 23-57 31-61 (281)
146 PLN02641 anthranilate phosphor 20.7 93 0.002 29.2 3.0 27 27-54 5-31 (343)
147 PF14850 Pro_dh-DNA_bdg: DNA-b 20.5 64 0.0014 25.4 1.5 35 39-77 11-52 (114)
148 TIGR01280 xseB exodeoxyribonuc 20.3 1.4E+02 0.0029 21.0 3.1 18 37-54 19-36 (67)
149 PHA01810 hypothetical protein 20.3 1.2E+02 0.0027 21.9 2.8 33 27-59 19-51 (100)
150 COG3763 Uncharacterized protei 20.3 1E+02 0.0022 22.1 2.3 28 22-49 21-48 (71)
151 smart00463 SMR Small MutS-rela 20.3 1.2E+02 0.0026 21.5 2.9 22 39-60 8-29 (80)
No 1
>KOG0175|consensus
Probab=99.94 E-value=5.2e-28 Score=208.32 Aligned_cols=172 Identities=19% Similarity=0.259 Sum_probs=141.7
Q ss_pred CCCCCCeeecCCCCCCCcc-c-cCC--CcCc--CccCCccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceE
Q psy9489 67 NGPSLGKYHDFPNVLPHYF-R-RSG--SFST--PLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTI 140 (279)
Q Consensus 67 ~g~~~~~f~~~~~~~~~~~-~-~~~--~~~~--~~~~G~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~ 140 (279)
+..+| +..||+.+|.+| + ... .... .+.+|||+||++|++|||+|+|+|+|.|++|.++.++||..||++++
T Consensus 36 ~f~~~--~~~P~~~~p~~~l~~~~~~~~~~~~i~~~hGTTTLAF~f~~GvivAvDSRAs~G~YIasqtv~KVIeIn~ylL 113 (285)
T KOG0175|consen 36 RFANP--LALPPGESPQTFLFAITDDETAGVLIKFAHGTTTLAFKFKGGVIVAVDSRASAGSYIASQTVKKVIEINPYLL 113 (285)
T ss_pred cccCc--ccCCCCCCchhhhhhccCCCcccceeeecCCceEEEEEecCcEEEEEeccccccceeechhhceeeeechhhh
Confidence 33555 888999999888 2 221 1111 24599999999999999999999999999999999999999999999
Q ss_pred eeecCcccccccchhhhhc--------cccccc---------------------ceeeEEEEEeCCcEEEEEcCCCccCc
Q psy9489 141 LGAGNDYADFQYLNDIVKQ--------KITPLT---------------------TGTSVLGLVFNGGVILAADSAGYYGS 191 (279)
Q Consensus 141 ~~~sG~~aD~~~l~~~l~~--------~~~pi~---------------------~g~tvlgi~~~~gvlia~D~~gs~g~ 191 (279)
.++||.+||||+|.+.+.+ +.+.++ .|+.+.|.+-+++-|+.+|.-|+-
T Consensus 114 GTmAGgAADCqfWer~L~kecRL~eLRnkeriSVsaASKllsN~~y~YkGmGLsmGtMi~G~Dk~GP~lyYVDseG~R-- 191 (285)
T KOG0175|consen 114 GTMAGGAADCQFWERVLAKECRLHELRNKERISVSAASKLLSNMVYQYKGMGLSMGTMIAGWDKKGPGLYYVDSEGTR-- 191 (285)
T ss_pred hcccCcchhhHHHHHHHHHHHHHHHHhcCcceehHHHHHHHHHHHhhccCcchhheeeEeeccCCCCceEEEcCCCCE--
Confidence 9999999999999999885 122222 334444555556666666666643
Q ss_pred eeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhcccccccccCCCCCHHHHHHHHHHHHhhc
Q psy9489 192 MMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDLHNDGFVLKPKSLHSWLTRVLYNR 258 (279)
Q Consensus 192 li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~~ee~~~l~~~~la~~isr~lys~ 258 (279)
+..+++.+|||+ .+++++|++.|+++|+.+|+.+|..++|+++.+|+.||.
T Consensus 192 ------------l~G~~FSVGSGs----~yAYGVLDsgYr~dls~eEA~~L~rrAI~hAThRDaySG 242 (285)
T KOG0175|consen 192 ------------LSGDLFSVGSGS----TYAYGVLDSGYRYDLSDEEAYDLARRAIYHATHRDAYSG 242 (285)
T ss_pred ------------ecCceEeecCCC----ceeEEeeccCCCCCCCHHHHHHHHHHHHHHHHhcccccC
Confidence 677899999999 999999999999999999999999999999999999975
No 2
>PTZ00488 Proteasome subunit beta type-5; Provisional
Probab=99.93 E-value=1.1e-25 Score=200.17 Aligned_cols=172 Identities=17% Similarity=0.236 Sum_probs=145.0
Q ss_pred CCCeeecCCCCCCCcc------c-cCCCcCcCccCCccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEee
Q psy9489 70 SLGKYHDFPNVLPHYF------R-RSGSFSTPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILG 142 (279)
Q Consensus 70 ~~~~f~~~~~~~~~~~------~-~~~~~~~~~~~G~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~ 142 (279)
+|-.|..||+..|..| . +-....-++.+|+|+|||+++||||||+|+|.+.++++.+++.+||++|++|++++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~T~IgIk~kdgVvlAaD~r~~~g~li~~~~~~KI~~I~~~i~~~ 83 (247)
T PTZ00488 4 GPEHFEHPPGAHPGDFLAEYTFDHGDANKAIEFAHGTTTLAFKYGGGIIIAVDSKATAGPYIASQSVKKVIEINPTLLGT 83 (247)
T ss_pred CccccccCCCCCHHHHHHHhhhccccCCcccccCCCceEEEEEeCCEEEEEEecCcccCCEEEcCCcCceEEcCCCEEEE
Confidence 5677888998888665 1 11122237889999999999999999999999999999999999999999999999
Q ss_pred ecCcccccccchhhhhccc---------------------------cc--ccceeeEEEEEeCCcEEEEEcCCCccCcee
Q psy9489 143 AGNDYADFQYLNDIVKQKI---------------------------TP--LTTGTSVLGLVFNGGVILAADSAGYYGSMM 193 (279)
Q Consensus 143 ~sG~~aD~~~l~~~l~~~~---------------------------~p--i~~g~tvlgi~~~~gvlia~D~~gs~g~li 193 (279)
.+|+.+|++.+.+.++.+. +| +..+..+.|++.+++-++.+|+.|++
T Consensus 84 ~sG~~aD~~~l~~~lr~~~~~y~~~~g~~isv~~la~~ls~~l~~~R~~~~~v~~iiaG~D~~gp~Ly~vDp~Gs~---- 159 (247)
T PTZ00488 84 MAGGAADCSFWERELAMQCRLYELRNGELISVAAASKILANIVWNYKGMGLSMGTMICGWDKKGPGLFYVDNDGTR---- 159 (247)
T ss_pred eCcCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhcCCCCeeEEEEEEEEeCCCCEEEEEcCCcce----
Confidence 9999999999999998621 11 11122334888778899999999987
Q ss_pred eecCCCceEEecccEEEEeccChhhHHHHHHHHHhhcccccccccCCCCCHHHHHHHHHHHHhhcc
Q psy9489 194 RFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDLHNDGFVLKPKSLHSWLTRVLYNRR 259 (279)
Q Consensus 194 ~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~~ee~~~l~~~~la~~isr~lys~r 259 (279)
...++.+.|+|+ ..+..+|++.|+++|+.+|+.++..+++.+++.|+.++..
T Consensus 160 ----------~~~~~~a~G~gs----~~~~~~Le~~~k~dms~eEai~l~~kal~~~~~Rd~~sg~ 211 (247)
T PTZ00488 160 ----------LHGNMFSCGSGS----TYAYGVLDAGFKWDLNDEEAQDLGRRAIYHATFRDAYSGG 211 (247)
T ss_pred ----------eecCCEEEccCH----HHHHHHHHhcCcCCCCHHHHHHHHHHHHHHHHHhccccCC
Confidence 667889999999 9999999999999999999999999999999999987754
No 3
>COG0638 PRE1 20S proteasome, alpha and beta subunits [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=2.1e-24 Score=191.00 Aligned_cols=151 Identities=19% Similarity=0.228 Sum_probs=131.9
Q ss_pred cCcCcc-CCccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhc----------
Q psy9489 91 FSTPLT-TGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQ---------- 159 (279)
Q Consensus 91 ~~~~~~-~G~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~---------- 159 (279)
+.+++. +|+|+|||+++||||||+|+|.+.+.++.+++++||++|+||+++++||+.+|+|.|++.++.
T Consensus 22 a~~a~~~~gtT~vgik~~dgVVlaadkr~t~~~~~~~~~~~Ki~~I~d~i~~~~sG~~aDa~~lv~~~r~~a~~~~~~~~ 101 (236)
T COG0638 22 ALEAVKRGGTTTVGIKGKDGVVLAADKRATSGLLIASSNVEKIFKIDDHIGMAIAGLAADAQVLVRYARAEAQLYRLRYG 101 (236)
T ss_pred HHHHHHcCCceEEEEEecCEEEEEEeccCCCCceecccccceEEEecCCEEEEeccCcHhHHHHHHHHHHHHHHHHHHhC
Confidence 355666 569999999999999999999999999999999999999999999999999999999999984
Q ss_pred -------------------cc--ccccceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhh
Q psy9489 160 -------------------KI--TPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYAD 218 (279)
Q Consensus 160 -------------------~~--~pi~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD 218 (279)
.. .|+..+..+.|++..++.|+..|+.|++ ...++.++|+|+
T Consensus 102 ~~i~v~~la~~ls~~l~~~~~~~rP~gv~~iiaG~d~~~p~Ly~~Dp~G~~--------------~~~~~~a~Gsgs--- 164 (236)
T COG0638 102 EPISVEALAKLLSNILQEYTQSGRPYGVSLLVAGVDDGGPRLYSTDPSGSY--------------NEYKATAIGSGS--- 164 (236)
T ss_pred CCCCHHHHHHHHHHHHHHhccCcccceEEEEEEEEcCCCCeEEEECCCCce--------------eecCEEEEcCCc---
Confidence 01 2433344444776656799999999988 677899999999
Q ss_pred HHHHHHHHHhhcccccccccCCCCCHHHHHHHHHHHHhhcc
Q psy9489 219 FQYLNDIVKQKILDDDLHNDGFVLKPKSLHSWLTRVLYNRR 259 (279)
Q Consensus 219 ~~~l~~~l~~~~~~~~~~ee~~~l~~~~la~~isr~lys~r 259 (279)
+.++..|+++|+++|+.+|+.++.+++|.+++.|+..+..
T Consensus 165 -~~a~~~Le~~y~~~m~~eeai~la~~al~~a~~rd~~s~~ 204 (236)
T COG0638 165 -QFAYGFLEKEYREDLSLEEAIELAVKALRAAIERDAASGG 204 (236)
T ss_pred -HHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhccccCCC
Confidence 9999999999999999999999999999999999887653
No 4
>cd03757 proteasome_beta_type_1 proteasome beta type-1 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.90 E-value=7.6e-24 Score=184.64 Aligned_cols=150 Identities=21% Similarity=0.281 Sum_probs=128.8
Q ss_pred CcCcc-CCccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhccc---------
Q psy9489 92 STPLT-TGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKI--------- 161 (279)
Q Consensus 92 ~~~~~-~G~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~~~--------- 161 (279)
|+|+. +|+|+|||+++||||||+|+|.+.+.++.+++.+||++|+++++++++|..+|+|.+.+.++.+.
T Consensus 1 ~~~~~~~G~Tvigik~~dgVvlaaD~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~ 80 (212)
T cd03757 1 FSPYTDNGGTVLAIAGNDFAVIAGDTRLSEGYSILSRDSPKIFKLTDKCVLGSSGFQADILALTKRLKARIKMYKYSHNK 80 (212)
T ss_pred CCCccCCCccEEEEEcCCEEEEEECCccccCCEeEeCCCCeEEEcCCCEEEEccchHHHHHHHHHHHHHHHHHHhHHhCC
Confidence 45776 99999999999999999999999999999999999999999999999999999999999988511
Q ss_pred ------------------c--cccceeeEEEEEeC-CcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHH
Q psy9489 162 ------------------T--PLTTGTSVLGLVFN-GGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQ 220 (279)
Q Consensus 162 ------------------~--pi~~g~tvlgi~~~-~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~ 220 (279)
+ |......+.|++.+ ++.|+.+|+.|++ ...++++.|+|+ +
T Consensus 81 ~i~~~~la~~ls~~ly~~R~~P~~~~~iiaG~D~~~~p~Ly~~D~~G~~--------------~~~~~~a~G~g~----~ 142 (212)
T cd03757 81 EMSTEAIAQLLSTILYSRRFFPYYVFNILAGIDEEGKGVVYSYDPVGSY--------------ERETYSAGGSAS----S 142 (212)
T ss_pred CCCHHHHHHHHHHHHHhhcCCCeEEEEEEEEEcCCCCEEEEEEcCccCe--------------eecCEEEEeecH----H
Confidence 1 32222233378754 4789999999987 677899999999 9
Q ss_pred HHHHHHHhhcc---------cccccccCCCCCHHHHHHHHHHHHhhcc
Q psy9489 221 YLNDIVKQKIL---------DDDLHNDGFVLKPKSLHSWLTRVLYNRR 259 (279)
Q Consensus 221 ~l~~~l~~~~~---------~~~~~ee~~~l~~~~la~~isr~lys~r 259 (279)
.+..+||+.|+ ++|+.+|+.++..+++...+.|+..+..
T Consensus 143 ~~~~~Le~~~~~~~~~~~~~~~ms~eea~~l~~~~l~~~~~rd~~sg~ 190 (212)
T cd03757 143 LIQPLLDNQVGRKNQNNVERTPLSLEEAVSLVKDAFTSAAERDIYTGD 190 (212)
T ss_pred HHHHHHHHHHHhhccCcCCCCCCCHHHHHHHHHHHHHHHHHhCcccCC
Confidence 99999999985 7899999999999999999999887653
No 5
>KOG0185|consensus
Probab=99.90 E-value=5.2e-24 Score=181.55 Aligned_cols=118 Identities=45% Similarity=0.865 Sum_probs=114.2
Q ss_pred ccccccceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhcccccccccC
Q psy9489 160 KITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDLHNDG 239 (279)
Q Consensus 160 ~~~pi~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~~ee~ 239 (279)
.+.|+.+|+++|+++|++|||+++|..+|||++.++++++|+++++++..+++||..+|+|++.+.|+....++..++++
T Consensus 34 t~~p~vTGTSVla~ky~~GVviaaD~lgSYGslaR~~nVeRi~kVgdntllG~sGdisD~Q~i~r~L~~l~iedn~~~Dg 113 (256)
T KOG0185|consen 34 TLNPIVTGTSVLALKYKDGVVIAADTLGSYGSLARYKNVERIFKVGDNTLLGASGDISDFQYIQRVLEQLVIEDNRLDDG 113 (256)
T ss_pred ccCceeccceEEEEEecCceEEEecccccchhhhhhcCceeeEEecCceEEecCccHHHHHHHHHHHHHHHhcccccccc
Confidence 56799999999999999999999999999999999999999999999999999999999999999999999888889999
Q ss_pred CCCCHHHHHHHHHHHHhhccCCCCccceEEEEEEEeCC
Q psy9489 240 FVLKPKSLHSWLTRVLYNRRSQFDPLWINAFVAGMQNG 277 (279)
Q Consensus 240 ~~l~~~~la~~isr~lys~r~~~~P~~vs~ii~G~D~~ 277 (279)
..+.+++|++++.|.||++|++++|+|.++++||+|++
T Consensus 114 ~~l~Pk~ih~yltrvlY~rRsKmnPlwntlvVgGv~~~ 151 (256)
T KOG0185|consen 114 QSLGPKAIHSYLTRVLYARRSKMNPLWNTLVVGGVDNT 151 (256)
T ss_pred cccChHHHHHHHHHHHHHhhhccCchhhheeEeeecCC
Confidence 99999999999999999999999999999999999973
No 6
>cd03760 proteasome_beta_type_4 proteasome beta type-4 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.90 E-value=1.3e-23 Score=181.07 Aligned_cols=145 Identities=28% Similarity=0.394 Sum_probs=126.8
Q ss_pred CCccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhccc---------------
Q psy9489 97 TGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKI--------------- 161 (279)
Q Consensus 97 ~G~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~~~--------------- 161 (279)
+|+|+|||+++||||||||+|.+.++++.+++.+||++|+++++++.+|..+|++.+.+.++.+.
T Consensus 1 ~G~T~igi~~kdgVvlaad~r~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~~ 80 (197)
T cd03760 1 TGTSVIAIKYKDGVIIAADTLGSYGSLARFKNVERIFKVGDNTLLGASGDYADFQYLKRLLDQLVIDDECLDDGHSLSPK 80 (197)
T ss_pred CCceEEEEEeCCcEEEEEcCcccccceeecCCCCcEEEecCcEEEEeCcchHHHHHHHHHHHHHHHHHHHHhCCCCCCHH
Confidence 69999999999999999999998899999999999999999999999999999999999887411
Q ss_pred -----------------ccccceeeEEEEEe-CCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHH
Q psy9489 162 -----------------TPLTTGTSVLGLVF-NGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLN 223 (279)
Q Consensus 162 -----------------~pi~~g~tvlgi~~-~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~ 223 (279)
+|......+.|++. .++.|+..|+.|++ ...++.+.|+|+ +++.
T Consensus 81 ~la~~i~~~~y~~~~~~rP~~v~~iiaG~D~~~gp~Ly~~D~~G~~--------------~~~~~~a~G~g~----~~~~ 142 (197)
T cd03760 81 EIHSYLTRVLYNRRSKMNPLWNTLVVGGVDNEGEPFLGYVDLLGTA--------------YEDPHVATGFGA----YLAL 142 (197)
T ss_pred HHHHHHHHHHHHHhhcCCCceEEEEEEEEcCCCCEEEEEEcCCccE--------------EECCEeEEccHH----HHHH
Confidence 12222233348875 56899999999987 677899999999 9999
Q ss_pred HHHHhhccc--ccccccCCCCCHHHHHHHHHHHHhhcc
Q psy9489 224 DIVKQKILD--DDLHNDGFVLKPKSLHSWLTRVLYNRR 259 (279)
Q Consensus 224 ~~l~~~~~~--~~~~ee~~~l~~~~la~~isr~lys~r 259 (279)
.+|++.|++ +|+.+|+.++..+++...+.|+..+..
T Consensus 143 ~~Le~~~~~~~~ms~eea~~l~~~~l~~~~~rd~~~~~ 180 (197)
T cd03760 143 PLLREAWEKKPDLTEEEARALIEECMKVLYYRDARSIN 180 (197)
T ss_pred HHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHhccccCC
Confidence 999999999 999999999999999999999887654
No 7
>cd03761 proteasome_beta_type_5 proteasome beta type-5 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.90 E-value=2.2e-23 Score=178.44 Aligned_cols=143 Identities=20% Similarity=0.284 Sum_probs=125.4
Q ss_pred ccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhccc--------cccc-----
Q psy9489 99 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKI--------TPLT----- 165 (279)
Q Consensus 99 ~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~~~--------~pi~----- 165 (279)
+|+|||+++||||||+|+|.+.++++.+++.+||++|++|++++.+|+.+|+|.+.+.++.+. ++++
T Consensus 1 tT~igi~~kdgVvla~d~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~y~~~~~~~i~~~~la 80 (188)
T cd03761 1 TTTLAFIFQGGVIVAVDSRATAGSYIASQTVKKVIEINPYLLGTMAGGAADCQYWERVLGRECRLYELRNKERISVAAAS 80 (188)
T ss_pred CcEEEEEECCEEEEEEcCCccCCcEEEcCCcceEEEccCcEEEEeCccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 699999999999999999999999999999999999999999999999999999999998521 1111
Q ss_pred --------------ceee--EEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhh
Q psy9489 166 --------------TGTS--VLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQK 229 (279)
Q Consensus 166 --------------~g~t--vlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~ 229 (279)
.+.+ +.|++.+++.++..|+.|++ ...++.+.|+|+ +.+..+||+.
T Consensus 81 ~~ls~~l~~~~~~~~~v~~li~G~D~~g~~L~~~dp~G~~--------------~~~~~~a~G~g~----~~~~~~Le~~ 142 (188)
T cd03761 81 KLLSNMLYQYKGMGLSMGTMICGWDKTGPGLYYVDSDGTR--------------LKGDLFSVGSGS----TYAYGVLDSG 142 (188)
T ss_pred HHHHHHHHhcCCCCeEEEEEEEEEeCCCCEEEEEcCCceE--------------EEcCeEEEcccH----HHHHHHHHhc
Confidence 2222 33788667899999999987 677899999999 9999999999
Q ss_pred cccccccccCCCCCHHHHHHHHHHHHhhcc
Q psy9489 230 ILDDDLHNDGFVLKPKSLHSWLTRVLYNRR 259 (279)
Q Consensus 230 ~~~~~~~ee~~~l~~~~la~~isr~lys~r 259 (279)
|+++|+.+|+.++..+++...+.|+..+..
T Consensus 143 ~~~~~s~eea~~l~~~~l~~~~~rd~~sg~ 172 (188)
T cd03761 143 YRYDLSVEEAYDLARRAIYHATHRDAYSGG 172 (188)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHhcccCCC
Confidence 999999999999999999999999887653
No 8
>cd03759 proteasome_beta_type_3 proteasome beta type-3 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.89 E-value=3.5e-23 Score=178.20 Aligned_cols=146 Identities=17% Similarity=0.133 Sum_probs=123.4
Q ss_pred CCccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhccc---------------
Q psy9489 97 TGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKI--------------- 161 (279)
Q Consensus 97 ~G~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~~~--------------- 161 (279)
+|+|+|||+++||||||+|+|.+.+.++.+++.+||++|++|++++++|..+|+|.+.+.++...
T Consensus 2 ~G~t~igik~~dgVvlaad~~~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~~ 81 (195)
T cd03759 2 NGGAVVAMAGKDCVAIASDLRLGVQQQTVSTDFQKVFRIGDRLYIGLAGLATDVQTLAQKLRFRVNLYRLREEREIKPKT 81 (195)
T ss_pred CCceEEEEEcCCEEEEEEccccccCCEeEecCCCeEEEeCCCEEEEccchHHHHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 69999999999999999999998888888889999999999999999999999999999998511
Q ss_pred --------------ccccceeeEEEEEeC-CcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHH
Q psy9489 162 --------------TPLTTGTSVLGLVFN-GGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIV 226 (279)
Q Consensus 162 --------------~pi~~g~tvlgi~~~-~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l 226 (279)
.|...+..+.|++.+ ++.|+.+|+.|++. ....+.+.|+|+ +.+..+|
T Consensus 82 la~~l~~~ly~~r~~P~~v~~ii~G~D~~~~p~Ly~~D~~G~~~-------------~~~~~~a~G~g~----~~~~~~L 144 (195)
T cd03759 82 FSSLISSLLYEKRFGPYFVEPVVAGLDPDGKPFICTMDLIGCPS-------------IPSDFVVSGTAS----EQLYGMC 144 (195)
T ss_pred HHHHHHHHHHHhcCCCceEEEEEEEEcCCCCEEEEEEcCCCccc-------------ccCCEEEEcccH----HHHHHHH
Confidence 122222233378744 58999999999861 223488999999 9999999
Q ss_pred HhhcccccccccCCCCCHHHHHHHHHHHHhhcc
Q psy9489 227 KQKILDDDLHNDGFVLKPKSLHSWLTRVLYNRR 259 (279)
Q Consensus 227 ~~~~~~~~~~ee~~~l~~~~la~~isr~lys~r 259 (279)
|++|+++|+.+|+.++..+++.....|+..+..
T Consensus 145 e~~~~~~~s~~ea~~l~~~~l~~~~~rd~~~~~ 177 (195)
T cd03759 145 ESLWRPDMEPDELFETISQALLSAVDRDALSGW 177 (195)
T ss_pred HhccCCCCCHHHHHHHHHHHHHHHHhhCcccCC
Confidence 999999999999999999999999998887653
No 9
>cd03750 proteasome_alpha_type_2 proteasome_alpha_type_2. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.89 E-value=2.2e-23 Score=183.55 Aligned_cols=147 Identities=14% Similarity=0.156 Sum_probs=128.0
Q ss_pred CcCcCccCCccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhccc--------
Q psy9489 90 SFSTPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKI-------- 161 (279)
Q Consensus 90 ~~~~~~~~G~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~~~-------- 161 (279)
.+++++++|+|+|||+++||||||+|+|.+ +.++.+++.+||++|++|++++++|..+|++.+.+.++...
T Consensus 19 yA~~av~~G~t~igik~~dgVvlaad~~~~-~~l~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~ 97 (227)
T cd03750 19 YALAAVSSGAPSVGIKAANGVVLATEKKVP-SPLIDESSVHKVEQITPHIGMVYSGMGPDFRVLVKKARKIAQQYYLVYG 97 (227)
T ss_pred HHHHHHHcCCCEEEEEeCCEEEEEEeecCC-ccccCCCCcceEEEEcCCEEEEEeEcHHhHHHHHHHHHHHHHHHHHHHC
Confidence 456789999999999999999999999977 78888999999999999999999999999999999988511
Q ss_pred -------------------------ccccceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccCh
Q psy9489 162 -------------------------TPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDY 216 (279)
Q Consensus 162 -------------------------~pi~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~ 216 (279)
+|+.....+.|++.+++.|+..|+.|++ ...++.+.|+|+
T Consensus 98 ~~~~v~~la~~l~~~~~~~t~~~~~rP~~v~~li~G~D~~g~~Ly~~d~~G~~--------------~~~~~~a~G~g~- 162 (227)
T cd03750 98 EPIPVSQLVREIASVMQEYTQSGGVRPFGVSLLIAGWDEGGPYLYQVDPSGSY--------------FTWKATAIGKNY- 162 (227)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCCCCCChheEEEEEEEeCCCCEEEEECCCCCE--------------EeeeEEEECCCC-
Confidence 1222223334888678899999999987 677899999999
Q ss_pred hhHHHHHHHHHhhcccccccccCCCCCHHHHHHHHHHHH
Q psy9489 217 ADFQYLNDIVKQKILDDDLHNDGFVLKPKSLHSWLTRVL 255 (279)
Q Consensus 217 aD~~~l~~~l~~~~~~~~~~ee~~~l~~~~la~~isr~l 255 (279)
+.+..+|+++|+++|+++|+.++..++|...+.+++
T Consensus 163 ---~~~~~~Le~~~~~~ms~eeai~l~~~~l~~~~~~~l 198 (227)
T cd03750 163 ---SNAKTFLEKRYNEDLELEDAIHTAILTLKEGFEGQM 198 (227)
T ss_pred ---HHHHHHHHhhccCCCCHHHHHHHHHHHHHHHhcccC
Confidence 999999999999999999999999999998887654
No 10
>TIGR03634 arc_protsome_B proteasome endopeptidase complex, archaeal, beta subunit. This protein family describes the archaeal proteasome beta subunit, homologous to both the alpha subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.
Probab=99.89 E-value=8e-23 Score=174.30 Aligned_cols=144 Identities=20% Similarity=0.281 Sum_probs=126.4
Q ss_pred CccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhccc----------------
Q psy9489 98 GTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKI---------------- 161 (279)
Q Consensus 98 G~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~~~---------------- 161 (279)
|+|+|||+++||||||+|+|.+.++++.+++.+||++|+++++++.+|..+|++.+.+.++.+.
T Consensus 1 G~t~igi~~~dgVvla~d~~~~~~~~i~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 80 (185)
T TIGR03634 1 GTTTVGIKCKDGVVLAADKRASMGNFVASKNAKKVFQIDDYIAMTIAGSVGDAQSLVRILKAEAKLYELRRGRPMSVKAL 80 (185)
T ss_pred CCcEEEEEeCCEEEEEEcCcccCCCEEecCCcccEEEcCCCEEEEcCchHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 7999999999999999999999999999999999999999999999999999999999887410
Q ss_pred -------------ccccceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHh
Q psy9489 162 -------------TPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQ 228 (279)
Q Consensus 162 -------------~pi~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~ 228 (279)
.|+.....+.|++.+++.++..|+.|++ ...++.+.|+|+ +++..+|++
T Consensus 81 a~~l~~~~~~~~~rP~~v~~ivaG~d~~g~~Ly~~d~~G~~--------------~~~~~~a~G~g~----~~~~~~Le~ 142 (185)
T TIGR03634 81 ATLLSNILNSNRFFPFIVQLLVGGVDEEGPHLYSLDPAGGI--------------IEDDYTATGSGS----PVAYGVLED 142 (185)
T ss_pred HHHHHHHHHhcCCCCeEEEEEEEEEeCCCCEEEEECCCCCe--------------EECCEEEEcCcH----HHHHHHHHh
Confidence 1222223344887778999999999987 666899999999 999999999
Q ss_pred hcccccccccCCCCCHHHHHHHHHHHHhhcc
Q psy9489 229 KILDDDLHNDGFVLKPKSLHSWLTRVLYNRR 259 (279)
Q Consensus 229 ~~~~~~~~ee~~~l~~~~la~~isr~lys~r 259 (279)
.|+++++.+|+..+..+++...+.|+.++..
T Consensus 143 ~~~~~~s~~ea~~l~~~~l~~~~~r~~~~~~ 173 (185)
T TIGR03634 143 EYREDMSVEEAKKLAVRAIKSAIERDVASGN 173 (185)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHHHhcccCCC
Confidence 9999999999999999999999998887654
No 11
>KOG0185|consensus
Probab=99.88 E-value=2.3e-23 Score=177.58 Aligned_cols=180 Identities=26% Similarity=0.407 Sum_probs=127.0
Q ss_pred CCCCCCCeeecCCCCCCCcc-c-cCCCcCcCccCCccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeee
Q psy9489 66 KNGPSLGKYHDFPNVLPHYF-R-RSGSFSTPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGA 143 (279)
Q Consensus 66 ~~g~~~~~f~~~~~~~~~~~-~-~~~~~~~~~~~G~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~ 143 (279)
-+||+|+.|| |-+...-++ . +.+++++|+.+|||+||+||+||||||||++.|+|++.++++++||++|+|++++|+
T Consensus 8 ~g~pa~~~f~-~~~~~m~~a~~~~~qrt~~p~vTGTSVla~ky~~GVviaaD~lgSYGslaR~~nVeRi~kVgdntllG~ 86 (256)
T KOG0185|consen 8 WGGPAPGTFY-PSGSLMENAGDYPIQRTLNPIVTGTSVLALKYKDGVVIAADTLGSYGSLARYKNVERIFKVGDNTLLGA 86 (256)
T ss_pred cCCCCCCcCc-CccchhhhccCCCcccccCceeccceEEEEEecCceEEEecccccchhhhhhcCceeeEEecCceEEec
Confidence 5689999999 223332223 2 567789999999999999999999999999999999999999999999999999999
Q ss_pred cCcccccccchhhhhcc------------cc--------------------cccceeeEEEEEeCCcEEE-EEcCCCccC
Q psy9489 144 GNDYADFQYLNDIVKQK------------IT--------------------PLTTGTSVLGLVFNGGVIL-AADSAGYYG 190 (279)
Q Consensus 144 sG~~aD~~~l~~~l~~~------------~~--------------------pi~~g~tvlgi~~~~gvli-a~D~~gs~g 190 (279)
||+.+|+|.+.+.|++. +. |+-..-.+-|++.++-..+ .+|-+|..
T Consensus 87 sGdisD~Q~i~r~L~~l~iedn~~~Dg~~l~Pk~ih~yltrvlY~rRsKmnPlwntlvVgGv~~~g~~~lg~V~~~G~~- 165 (256)
T KOG0185|consen 87 SGDISDFQYIQRVLEQLVIEDNRLDDGQSLGPKAIHSYLTRVLYARRSKMNPLWNTLVVGGVDNTGEPFLGYVDLLGVA- 165 (256)
T ss_pred CccHHHHHHHHHHHHHHHhcccccccccccChHHHHHHHHHHHHHhhhccCchhhheeEeeecCCCCeeEEEEeecccc-
Confidence 99999999999999862 11 2111112226665433333 46777755
Q ss_pred ceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhcccccccccCCCCCHHHHHHHHHHHH---hhccCC-CCccc
Q psy9489 191 SMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDLHNDGFVLKPKSLHSWLTRVL---YNRRSQ-FDPLW 266 (279)
Q Consensus 191 ~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~~ee~~~l~~~~la~~isr~l---ys~r~~-~~P~~ 266 (279)
.....+++|-|. ..+..+||+.+. ....+++.++....+.+.| |.+.++ .+-|.
T Consensus 166 -------------Y~~~~vATGfg~----hLa~P~lR~~~~-----~k~~~~s~eeA~~li~~cMrVL~YRD~ra~n~fq 223 (256)
T KOG0185|consen 166 -------------YESPVVATGFGA----HLALPLLRDEWE-----KKGEDLSREEAEALIEKCMRVLYYRDARASNEFQ 223 (256)
T ss_pred -------------ccCchhhhhhHH----HhhhHHHHHhhh-----ccchhhHHHHHHHHHHHHHHHHhccccccccceE
Confidence 456677888888 777778877775 1223555555444444433 433322 34455
Q ss_pred eEE
Q psy9489 267 INA 269 (279)
Q Consensus 267 vs~ 269 (279)
+..
T Consensus 224 va~ 226 (256)
T KOG0185|consen 224 VAT 226 (256)
T ss_pred EEE
Confidence 544
No 12
>cd03752 proteasome_alpha_type_4 proteasome_alpha_type_4. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.88 E-value=5.4e-23 Score=179.34 Aligned_cols=149 Identities=17% Similarity=0.167 Sum_probs=128.3
Q ss_pred CcCcCccCCccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhccc--------
Q psy9489 90 SFSTPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKI-------- 161 (279)
Q Consensus 90 ~~~~~~~~G~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~~~-------- 161 (279)
.+++++++|+|+|||+++||||||+|+|.+.+.++.+++.+||++|++++++++||..+|++.+.+.++...
T Consensus 21 ya~~a~~~G~t~igi~~~dgVvla~d~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~ 100 (213)
T cd03752 21 YAMEAISHAGTCLGILAKDGIVLAAEKKVTSKLLDQSFSSEKIYKIDDHIACAVAGITSDANILINYARLIAQRYLYSYQ 100 (213)
T ss_pred hHHHHHhcCCCEEEEEeCCEEEEEEEeccCCcccCCCcCcceEEEecCCEEEEEecChHhHHHHHHHHHHHHHHHHHHHC
Confidence 456789999999999999999999999998888887889999999999999999999999999999998510
Q ss_pred -------------------------ccccceeeEEEEEe-CCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccC
Q psy9489 162 -------------------------TPLTTGTSVLGLVF-NGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGND 215 (279)
Q Consensus 162 -------------------------~pi~~g~tvlgi~~-~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~ 215 (279)
+|+..+..+.|++. +++.|+..|+.|++ ...++.+.|+|+
T Consensus 101 ~~i~v~~la~~ls~~~~~~t~~~~~RP~~v~~li~G~D~~~g~~ly~~d~~G~~--------------~~~~~~a~G~gs 166 (213)
T cd03752 101 EPIPVEQLVQRLCDIKQGYTQYGGLRPFGVSFLYAGWDKHYGFQLYQSDPSGNY--------------SGWKATAIGNNN 166 (213)
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCcccceeEEEEEEEeCCCCCEEEEECCCCCe--------------eeeeEEEECCCc
Confidence 12222233448874 46799999999987 556899999999
Q ss_pred hhhHHHHHHHHHhhcccccccccCCCCCHHHHHHHHHHHHh
Q psy9489 216 YADFQYLNDIVKQKILDDDLHNDGFVLKPKSLHSWLTRVLY 256 (279)
Q Consensus 216 ~aD~~~l~~~l~~~~~~~~~~ee~~~l~~~~la~~isr~ly 256 (279)
..+..+|+++|+++|+.+|+.++..++|.+++.|+..
T Consensus 167 ----~~~~~~Le~~y~~~ms~eea~~l~~~al~~~~~r~~~ 203 (213)
T cd03752 167 ----QAAQSLLKQDYKDDMTLEEALALAVKVLSKTMDSTKL 203 (213)
T ss_pred ----HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhccCC
Confidence 9999999999999999999999999999999887643
No 13
>PRK05456 ATP-dependent protease subunit HslV; Provisional
Probab=99.88 E-value=1.5e-22 Score=170.61 Aligned_cols=139 Identities=18% Similarity=0.182 Sum_probs=119.4
Q ss_pred CccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEe-cCceEeeecCcccccccchhhhhcccc--------------
Q psy9489 98 GTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQI-NKFTILGAGNDYADFQYLNDIVKQKIT-------------- 162 (279)
Q Consensus 98 G~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i-~~~~~~~~sG~~aD~~~l~~~l~~~~~-------------- 162 (279)
|||++||+++||||||||+|.+.|.++.+++.+||++| ++++++++||..||+|+|.+.++.+.+
T Consensus 1 gtTivgi~~~dgVvlaaD~r~s~g~~v~~~~~~KI~~i~~d~i~~~~aG~~aD~q~l~~~l~~~~~~y~~~~~~~~a~l~ 80 (172)
T PRK05456 1 GTTILAVRRNGKVAIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLEEHQGNLLRAAVELA 80 (172)
T ss_pred CcEEEEEEECCEEEEEECCceEeCcEEEcCCCceEEEeCCCCEEEEEeccHHHHHHHHHHHHHHHHHccCccHHHHHHHH
Confidence 79999999999999999999999999999999999999 999999999999999999999996211
Q ss_pred ------cc--cceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecc--cEEEEeccChhhHHHHHHHHHhhcc-
Q psy9489 163 ------PL--TTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINK--FTILGAGNDYADFQYLNDIVKQKIL- 231 (279)
Q Consensus 163 ------pi--~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~--~~~~~gSG~~aD~~~l~~~l~~~~~- 231 (279)
|. .....+| .++++.++..|+.|+. +.+ ++++.|||+ .+++++|+++|+
T Consensus 81 ~~l~~~~~~~~l~~~~l--v~d~~~ly~id~~G~~--------------~~~~~~~~a~GSGs----~~a~g~ld~~y~~ 140 (172)
T PRK05456 81 KDWRTDRYLRRLEAMLI--VADKEHSLIISGNGDV--------------IEPEDGIIAIGSGG----NYALAAARALLEN 140 (172)
T ss_pred HHHHhccCCCccEEEEE--EEcCCcEEEECCCCcE--------------eccCCCeEEEecCH----HHHHHHHHHhhhc
Confidence 11 0112222 1456788888988865 444 799999999 999999999999
Q ss_pred cccccccCCCCCHHHHHHHHHHHHhhcc
Q psy9489 232 DDDLHNDGFVLKPKSLHSWLTRVLYNRR 259 (279)
Q Consensus 232 ~~~~~ee~~~l~~~~la~~isr~lys~r 259 (279)
++| |+.++..+++.+++.|+.+|..
T Consensus 141 ~~m---eA~~la~kai~~A~~Rd~~sg~ 165 (172)
T PRK05456 141 TDL---SAEEIAEKALKIAADICIYTNH 165 (172)
T ss_pred CCC---CHHHHHHHHHHHHHHhCeeCCC
Confidence 988 8999999999999999999864
No 14
>cd03751 proteasome_alpha_type_3 proteasome_alpha_type_3. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.88 E-value=7.1e-23 Score=178.54 Aligned_cols=145 Identities=12% Similarity=0.123 Sum_probs=124.4
Q ss_pred CcCcCccCCccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhccc--------
Q psy9489 90 SFSTPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKI-------- 161 (279)
Q Consensus 90 ~~~~~~~~G~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~~~-------- 161 (279)
.+++++++|+|+|||+++||||||+|+|.+ +.++.+++.+||++|++|++++++|+.+|++.+.+.++...
T Consensus 22 ya~~a~~~G~tvIgik~kdgVvla~d~r~~-~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~y~~~~~ 100 (212)
T cd03751 22 YANKAVENSGTAIGIRCKDGVVLAVEKLVT-SKLYEPGSNKRIFNVDRHIGIAVAGLLADGRHLVSRAREEAENYRDNYG 100 (212)
T ss_pred HHHHHHhcCCCEEEEEeCCEEEEEEEcccc-ccccCcchhcceeEecCcEEEEEEEChHhHHHHHHHHHHHHHHHHHHHC
Confidence 456788999999999999999999999976 47777789999999999999999999999999999988411
Q ss_pred -------------------------ccccceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccCh
Q psy9489 162 -------------------------TPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDY 216 (279)
Q Consensus 162 -------------------------~pi~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~ 216 (279)
+|+.....+.|++.+++.|+..|+.|++ ...++.+.|+|+
T Consensus 101 ~~~~v~~la~~ls~~~~~~t~~~~~rP~~vs~li~G~D~~gp~Ly~~D~~Gs~--------------~~~~~~a~G~g~- 165 (212)
T cd03751 101 TPIPVKVLADRVAMYMHAYTLYSSVRPFGCSVLLGGYDSDGPQLYMIEPSGVS--------------YGYFGCAIGKGK- 165 (212)
T ss_pred CCCCHHHHHHHHHHHHHHhccCCCcCCceEEEEEEEEeCCcCEEEEECCCCCE--------------EeeEEEEECCCC-
Confidence 1222223344888668999999999988 677899999999
Q ss_pred hhHHHHHHHHHhhcccccccccCCCCCHHHHHHHHHH
Q psy9489 217 ADFQYLNDIVKQKILDDDLHNDGFVLKPKSLHSWLTR 253 (279)
Q Consensus 217 aD~~~l~~~l~~~~~~~~~~ee~~~l~~~~la~~isr 253 (279)
..+..+||++|+++|+++|+.++..++|.+.+..
T Consensus 166 ---~~a~~~Lek~~~~dms~eeai~l~~~~L~~~~~~ 199 (212)
T cd03751 166 ---QAAKTELEKLKFSELTCREAVKEAAKIIYIVHDE 199 (212)
T ss_pred ---HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999988888888887763
No 15
>cd03763 proteasome_beta_type_7 proteasome beta type-7 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.88 E-value=2.3e-22 Score=172.21 Aligned_cols=143 Identities=15% Similarity=0.219 Sum_probs=124.3
Q ss_pred ccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhccc--------cccc-----
Q psy9489 99 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKI--------TPLT----- 165 (279)
Q Consensus 99 ~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~~~--------~pi~----- 165 (279)
||+|||+++||||||+|+|.+.|+++.+++.+||++|+++++++++|..+|+|.+.+.++.+. ++++
T Consensus 1 tt~igi~~~dgvvlaad~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~a 80 (189)
T cd03763 1 TTIVGVVFKDGVVLGADTRATEGPIVADKNCEKIHYIAPNIYCCGAGTAADTEAVTNMISSNLELHRLNTGRKPRVVTAL 80 (189)
T ss_pred CeEEEEEECCeEEEEEcCCcccCceEEcCCccceEEecCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 699999999999999999999999999999999999999999999999999999999888521 1111
Q ss_pred -------------ceee--EEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhc
Q psy9489 166 -------------TGTS--VLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKI 230 (279)
Q Consensus 166 -------------~g~t--vlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~ 230 (279)
.+.+ +.|++.+++.|+..|+.|++ ...++.+.|+|+ ..+..+|+++|
T Consensus 81 ~~l~~~l~~~~~p~~v~~ivaG~d~~g~~ly~~d~~G~~--------------~~~~~~a~G~~~----~~~~~~L~~~~ 142 (189)
T cd03763 81 TMLKQHLFRYQGHIGAALVLGGVDYTGPHLYSIYPHGST--------------DKLPFVTMGSGS----LAAMSVLEDRY 142 (189)
T ss_pred HHHHHHHHHcCCccceeEEEEeEcCCCCEEEEECCCCCE--------------EecCEEEEcCCH----HHHHHHHHhhc
Confidence 1222 33787667899999999987 677899999999 99999999999
Q ss_pred ccccccccCCCCCHHHHHHHHHHHHhhcc
Q psy9489 231 LDDDLHNDGFVLKPKSLHSWLTRVLYNRR 259 (279)
Q Consensus 231 ~~~~~~ee~~~l~~~~la~~isr~lys~r 259 (279)
+++++.+|+.++..+++.....|+.++..
T Consensus 143 ~~~ls~~ea~~l~~~~l~~~~~rd~~~~~ 171 (189)
T cd03763 143 KPDMTEEEAKKLVCEAIEAGIFNDLGSGS 171 (189)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCcCCC
Confidence 99999999999999999999998877643
No 16
>cd03758 proteasome_beta_type_2 proteasome beta type-2 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.88 E-value=2.2e-22 Score=172.92 Aligned_cols=142 Identities=16% Similarity=0.204 Sum_probs=124.5
Q ss_pred ccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhccc-----------------
Q psy9489 99 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKI----------------- 161 (279)
Q Consensus 99 ~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~~~----------------- 161 (279)
+|+|||+++||||||+|+|.+.+.++.+++.+||++|+++++++.||+.||+|.+.+.++...
T Consensus 2 ~t~igi~~~dgVvlaad~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~~~~la 81 (193)
T cd03758 2 ETLIGIKGKDFVILAADTSAARSILVLKDDEDKIYKLSDHKLMACSGEAGDRLQFAEYIQKNIQLYKMRNGYELSPKAAA 81 (193)
T ss_pred ceEEEEEeCCEEEEEEcCccccCcEEEecCcccEEEeCCCeEEEEccchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 699999999999999999999999999999999999999999999999999999999988510
Q ss_pred --------------ccccceeeEEEEEe-CCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHH
Q psy9489 162 --------------TPLTTGTSVLGLVF-NGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIV 226 (279)
Q Consensus 162 --------------~pi~~g~tvlgi~~-~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l 226 (279)
.|+..+..+.|++. .++.|+..|+.|++ ...++.+.|+|+ +.+..+|
T Consensus 82 ~~l~~~~~~~~~~~rP~~~~~li~G~d~~~~p~Ly~~d~~G~~--------------~~~~~~a~G~gs----~~~~~~L 143 (193)
T cd03758 82 NFTRRELAESLRSRTPYQVNLLLAGYDKVEGPSLYYIDYLGTL--------------VKVPYAAHGYGA----YFCLSIL 143 (193)
T ss_pred HHHHHHHHHHhhcCCCeEEEEEEEEEcCCCCcEEEEECCCcce--------------EECCeeEEeecH----HHHHHHH
Confidence 13333333448874 57899999999987 677899999999 9999999
Q ss_pred HhhcccccccccCCCCCHHHHHHHHHHHHhhc
Q psy9489 227 KQKILDDDLHNDGFVLKPKSLHSWLTRVLYNR 258 (279)
Q Consensus 227 ~~~~~~~~~~ee~~~l~~~~la~~isr~lys~ 258 (279)
|+.|+++|+.+|+.++..+++.+...|+..+.
T Consensus 144 e~~~~~~ms~eeai~l~~~a~~~~~~rd~~~~ 175 (193)
T cd03758 144 DRYYKPDMTVEEALELMKKCIKELKKRFIINL 175 (193)
T ss_pred HhccCCCCCHHHHHHHHHHHHHHHHHhccccC
Confidence 99999999999999999999999998887654
No 17
>cd03762 proteasome_beta_type_6 proteasome beta type-6 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.88 E-value=2.7e-22 Score=171.56 Aligned_cols=142 Identities=20% Similarity=0.262 Sum_probs=122.9
Q ss_pred ccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhccc--------ccc------
Q psy9489 99 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKI--------TPL------ 164 (279)
Q Consensus 99 ~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~~~--------~pi------ 164 (279)
+|+|||+++||||||+|+|.+.|+++.+++.+||++|+++++++++|+.+|+|.|.+.++... +++
T Consensus 1 ~t~igi~~~dgVvla~D~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~~~~~a 80 (188)
T cd03762 1 TTIIAVEYDGGVVLGADSRTSTGSYVANRVTDKLTQLHDRIYCCRSGSAADTQAIADYVRYYLDMHSIELGEPPLVKTAA 80 (188)
T ss_pred CeEEEEEECCeEEEEEcccccCCceEEcCCcccEEEccCCEEEEecccHHHHHHHHHHHHHHHHHhHHhhCCCCCHHHHH
Confidence 699999999999999999999999999999999999999999999999999999999987511 111
Q ss_pred ------------cceee--EEEEEe-CCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhh
Q psy9489 165 ------------TTGTS--VLGLVF-NGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQK 229 (279)
Q Consensus 165 ------------~~g~t--vlgi~~-~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~ 229 (279)
..+.+ +.|++. +++.++..|+.|++ ...+++++|+|+ +.+..+|++.
T Consensus 81 ~~l~~~~~~~~~~~~~~~ii~G~d~~~gp~ly~~d~~G~~--------------~~~~~~~~G~g~----~~~~~~Le~~ 142 (188)
T cd03762 81 SLFKNLCYNYKEMLSAGIIVAGWDEQNGGQVYSIPLGGML--------------IRQPFAIGGSGS----TYIYGYVDAN 142 (188)
T ss_pred HHHHHHHHhccccceeeEEEEEEcCCCCcEEEEECCCCCE--------------EecCEEEEcccH----HHHHHHHHhc
Confidence 02333 337764 56899999999987 566788899999 9999999999
Q ss_pred cccccccccCCCCCHHHHHHHHHHHHhhc
Q psy9489 230 ILDDDLHNDGFVLKPKSLHSWLTRVLYNR 258 (279)
Q Consensus 230 ~~~~~~~ee~~~l~~~~la~~isr~lys~ 258 (279)
|+++++.+|+.++..+++..++.|+..+.
T Consensus 143 ~~~~~s~~ea~~l~~~al~~~~~rd~~~~ 171 (188)
T cd03762 143 YKPGMTLEECIKFVKNALSLAMSRDGSSG 171 (188)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHhccccC
Confidence 99999999999999999999999988764
No 18
>TIGR03690 20S_bact_beta proteasome, beta subunit, bacterial type. Members of this family are the beta subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In Streptomyces, maturation during proteasome assembly was shown to remove a 53-amino acid propeptide. Most of the length of the propeptide is not included in this model.
Probab=99.88 E-value=2e-22 Score=176.50 Aligned_cols=145 Identities=17% Similarity=0.231 Sum_probs=124.8
Q ss_pred CCccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhccc---------------
Q psy9489 97 TGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKI--------------- 161 (279)
Q Consensus 97 ~G~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~~~--------------- 161 (279)
+|+|+|||+++||||||+|+|.+.|+++.+++.+||++|++|++++++|+.+|++.+.+.++.+.
T Consensus 1 ~G~T~igi~~kdgVvlaad~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~ 80 (219)
T TIGR03690 1 HGTTIVALTYPGGVLMAGDRRATQGNMIASRDVEKVYPTDEYSAVGIAGTAGLAIELVRLFQVELEHYEKIEGVPLTLDG 80 (219)
T ss_pred CCcEEEEEEECCEEEEEECCccccCcEEEcCCcceEEEcCCcEEEEecccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
Confidence 48999999999999999999999999999999999999999999999999999999999998411
Q ss_pred -----------------ccccceeeEEEEEe--CCcEEEEEcCCCc-cCceeeecCCCceEEecccEEEEeccChhhHHH
Q psy9489 162 -----------------TPLTTGTSVLGLVF--NGGVILAADSAGY-YGSMMRFNDCPRIMQINKFTILGAGNDYADFQY 221 (279)
Q Consensus 162 -----------------~pi~~g~tvlgi~~--~~gvlia~D~~gs-~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~ 221 (279)
+|+.....+.|++. .++.++.+|+.|+ + ...++.+.|+|+ +.
T Consensus 81 la~~ls~~~~~~~~~~~rp~~v~~iiaG~D~~~~~~~Ly~~Dp~G~~~--------------~~~~~~a~G~g~----~~ 142 (219)
T TIGR03690 81 KANRLAAMVRGNLPAAMQGLAVVPLLAGYDLDAGAGRIFSYDVTGGRY--------------EERGYHAVGSGS----VF 142 (219)
T ss_pred HHHHHHHHHHhhhhhccCCceEEEEEEEECCCCCCcEEEEEeCCCCee--------------ecCCeEEEeccH----HH
Confidence 12211222337874 3578999999994 4 344689999999 99
Q ss_pred HHHHHHhhcccccccccCCCCCHHHHHHHHHHHHhhcc
Q psy9489 222 LNDIVKQKILDDDLHNDGFVLKPKSLHSWLTRVLYNRR 259 (279)
Q Consensus 222 l~~~l~~~~~~~~~~ee~~~l~~~~la~~isr~lys~r 259 (279)
+..+|+++|+++|+.+|+.++..+++.+.+.++.++..
T Consensus 143 a~~~Le~~~~~~ms~eeai~l~~~al~~~~~~d~~s~~ 180 (219)
T TIGR03690 143 AKGALKKLYSPDLDEDDALRVAVEALYDAADDDSATGG 180 (219)
T ss_pred HHHHHHhcCCCCcCHHHHHHHHHHHHHHHHhcccccCC
Confidence 99999999999999999999999999999999987765
No 19
>cd03764 proteasome_beta_archeal Archeal proteasome, beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme for non-lysosomal protein degradation in both the cytosol and the nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are both members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.87 E-value=3.8e-22 Score=170.57 Aligned_cols=143 Identities=20% Similarity=0.267 Sum_probs=124.2
Q ss_pred ccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhccc-----------------
Q psy9489 99 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKI----------------- 161 (279)
Q Consensus 99 ~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~~~----------------- 161 (279)
+|+|||+++||||||+|+|.+.|+++.+++.+||++|+++++++++|+.+|++.+.+.++...
T Consensus 1 tt~iai~~~dgvvia~d~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (188)
T cd03764 1 TTTVGIVCKDGVVLAADKRASMGNFIASKNVKKIFQIDDKIAMTIAGSVGDAQSLVRILKAEARLYELRRGRPMSIKALA 80 (188)
T ss_pred CcEEEEEeCCEEEEEEccccccCCEEecCCcccEEEccCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 699999999999999999999999999999999999999999999999999999999888511
Q ss_pred ------------ccccceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhh
Q psy9489 162 ------------TPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQK 229 (279)
Q Consensus 162 ------------~pi~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~ 229 (279)
.|......+.|++.+++.|+..|+.|++ ...++.+.|+|+ +++..+|++.
T Consensus 81 ~~i~~~~~~~~~~P~~~~~lvaG~d~~~~~ly~~D~~G~~--------------~~~~~~a~G~g~----~~~~~~L~~~ 142 (188)
T cd03764 81 TLLSNILNSSKYFPYIVQLLIGGVDEEGPHLYSLDPLGSI--------------IEDKYTATGSGS----PYAYGVLEDE 142 (188)
T ss_pred HHHHHHHHhcCCCCcEEEEEEEEEeCCCCEEEEECCCCCE--------------EEcCEEEEcCcH----HHHHHHHHhc
Confidence 1221222333787667899999999987 566799999999 9999999999
Q ss_pred cccccccccCCCCCHHHHHHHHHHHHhhcc
Q psy9489 230 ILDDDLHNDGFVLKPKSLHSWLTRVLYNRR 259 (279)
Q Consensus 230 ~~~~~~~ee~~~l~~~~la~~isr~lys~r 259 (279)
|+++++.+|+.++..+++...+.|+.++..
T Consensus 143 ~~~~~~~~ea~~l~~~~l~~~~~rd~~~~~ 172 (188)
T cd03764 143 YKEDMTVEEAKKLAIRAIKSAIERDSASGD 172 (188)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhhcCCCCC
Confidence 999999999999999999999998876643
No 20
>PTZ00246 proteasome subunit alpha; Provisional
Probab=99.87 E-value=2.2e-22 Score=179.97 Aligned_cols=149 Identities=19% Similarity=0.143 Sum_probs=127.6
Q ss_pred CcCcCccCCccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhcc--------c
Q psy9489 90 SFSTPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQK--------I 161 (279)
Q Consensus 90 ~~~~~~~~G~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~~--------~ 161 (279)
.+++++++|+|+|||+++||||||+|+|.+.+.++.+++.+||++|+++++++++|..+|++.+.+.++.. .
T Consensus 23 YA~~av~~g~t~Igik~~dgVvlaad~r~s~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~ 102 (253)
T PTZ00246 23 YALEAINNASLTVGILCKEGVILGADKPISSKLLDPGKINEKIYKIDSHIFCAVAGLTADANILINQCRLYAQRYRYTYG 102 (253)
T ss_pred HHHHHHHhCCCEEEEEECCEEEEEEecCCCCcCccCCCCcccEEEecCCEEEEEEEcHHHHHHHHHHHHHHHHHHHHHHC
Confidence 56779999999999999999999999999988888888899999999999999999999999999987741 0
Q ss_pred -------------------------ccccceeeEEEEEe-CCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccC
Q psy9489 162 -------------------------TPLTTGTSVLGLVF-NGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGND 215 (279)
Q Consensus 162 -------------------------~pi~~g~tvlgi~~-~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~ 215 (279)
+|+.....+.|++. +++.|+..|+.|++ ...++.+.|+|+
T Consensus 103 ~~~~v~~l~~~l~~~~q~~~~~~~~rP~~v~~li~G~D~~~gp~Ly~~D~~Gs~--------------~~~~~~a~G~gs 168 (253)
T PTZ00246 103 EPQPVEQLVVQICDLKQSYTQFGGLRPFGVSFLFAGYDENLGYQLYHTDPSGNY--------------SGWKATAIGQNN 168 (253)
T ss_pred CCCCHHHHHHHHHHHHHHhccccCcccCCEEEEEEEEeCCCCcEEEEECCCCCE--------------ecceEEEECCCc
Confidence 12222233448874 56789999999987 567789999999
Q ss_pred hhhHHHHHHHHHhhcccccccccCCCCCHHHHHHHHHHHHh
Q psy9489 216 YADFQYLNDIVKQKILDDDLHNDGFVLKPKSLHSWLTRVLY 256 (279)
Q Consensus 216 ~aD~~~l~~~l~~~~~~~~~~ee~~~l~~~~la~~isr~ly 256 (279)
+.+..+|+++|+++|+.+|+.++..++|...+.++..
T Consensus 169 ----~~~~~~Le~~~~~~ms~eeai~l~~~al~~~~~~d~~ 205 (253)
T PTZ00246 169 ----QTAQSILKQEWKEDLTLEQGLLLAAKVLTKSMDSTSP 205 (253)
T ss_pred ----HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhccCC
Confidence 9999999999999999999999999999988876654
No 21
>cd03756 proteasome_alpha_archeal proteasome_alpha_archeal. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.87 E-value=1.7e-22 Score=175.97 Aligned_cols=147 Identities=18% Similarity=0.225 Sum_probs=125.9
Q ss_pred CcCcCccCCccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhcc---------
Q psy9489 90 SFSTPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQK--------- 160 (279)
Q Consensus 90 ~~~~~~~~G~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~~--------- 160 (279)
.+++++++|+|+|||+++||||||+|+|.+ +.++..++.+||++|+++++++.||+.+|++.+.+.++..
T Consensus 20 ya~~av~~G~t~igik~~dgvvla~d~~~~-~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~ 98 (211)
T cd03756 20 YAREAVKRGTTALGIKCKEGVVLAVDKRIT-SKLVEPESIEKIYKIDDHVGAATSGLVADARVLIDRARVEAQIHRLTYG 98 (211)
T ss_pred HHHHHHHcCCCEEEEEECCEEEEEEeccCC-CcccCCCccceEEEEcCCEEEEEecCHHHHHHHHHHHHHHHHHHHHHHC
Confidence 456788999999999999999999999976 6778889999999999999999999999999999988741
Q ss_pred ------------------------cccccceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccCh
Q psy9489 161 ------------------------ITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDY 216 (279)
Q Consensus 161 ------------------------~~pi~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~ 216 (279)
.+|......+.|++..++.|+..|+.|++ ...++.+.|+|+
T Consensus 99 ~~~~~~~la~~ls~~~~~~~~~~~~rP~~v~~ll~G~D~~~~~ly~vd~~G~~--------------~~~~~~a~G~g~- 163 (211)
T cd03756 99 EPIDVEVLVKKICDLKQQYTQHGGVRPFGVALLIAGVDDGGPRLFETDPSGAY--------------NEYKATAIGSGR- 163 (211)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCCCeechhEEEEEEEEeCCCCEEEEECCCCCe--------------eeeEEEEECCCC-
Confidence 01222333444888778999999999987 566789999999
Q ss_pred hhHHHHHHHHHhhcccccccccCCCCCHHHHHHHHHHHH
Q psy9489 217 ADFQYLNDIVKQKILDDDLHNDGFVLKPKSLHSWLTRVL 255 (279)
Q Consensus 217 aD~~~l~~~l~~~~~~~~~~ee~~~l~~~~la~~isr~l 255 (279)
+.+..+|++.|+++|+.+|+.++..+++..++.+++
T Consensus 164 ---~~~~~~Le~~~~~~m~~~ea~~l~~~~l~~~~~~~~ 199 (211)
T cd03756 164 ---QAVTEFLEKEYKEDMSLEEAIELALKALYAALEENE 199 (211)
T ss_pred ---HHHHHHHHhhccCCCCHHHHHHHHHHHHHHHhcccC
Confidence 999999999999999999999999999998877654
No 22
>cd01911 proteasome_alpha proteasome alpha subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 different alpha and 10 different beta proteasome subunit genes while archaea have one of each.
Probab=99.87 E-value=2.3e-22 Score=174.88 Aligned_cols=147 Identities=16% Similarity=0.183 Sum_probs=126.7
Q ss_pred CcCcCccCCccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhccc--------
Q psy9489 90 SFSTPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKI-------- 161 (279)
Q Consensus 90 ~~~~~~~~G~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~~~-------- 161 (279)
.+++++.+|+|+|||+++||||||+|+|.+. +++..++.+||++|+++++++++|..+|++.+.+.++...
T Consensus 19 ya~~~~~~G~tvigi~~~dgVvlaaD~~~~~-~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~g 97 (209)
T cd01911 19 YALEAVKNGSTAVGIKGKDGVVLAVEKKVTS-KLLDPSSVEKIFKIDDHIGCAVAGLTADARVLVNRARVEAQNYRYTYG 97 (209)
T ss_pred HHHHHHHcCCCEEEEEECCEEEEEEEecCCc-cccCCcccceEEEecCCeEEEeccCcHhHHHHHHHHHHHHHHHHHHhC
Confidence 3456889999999999999999999999875 5667789999999999999999999999999999988410
Q ss_pred -------------------------ccccceeeEEEEEeC-CcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccC
Q psy9489 162 -------------------------TPLTTGTSVLGLVFN-GGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGND 215 (279)
Q Consensus 162 -------------------------~pi~~g~tvlgi~~~-~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~ 215 (279)
+|+.....+.|++.+ ++.|+..|+.|++ ...++.+.|+|+
T Consensus 98 ~~~~~~~la~~ls~~~~~~~~~~~~rP~~v~~iv~G~d~~~~~~Ly~iD~~G~~--------------~~~~~~a~G~g~ 163 (209)
T cd01911 98 EPIPVEVLVKRIADLAQVYTQYGGVRPFGVSLLIAGYDEEGGPQLYQTDPSGTY--------------FGYKATAIGKGS 163 (209)
T ss_pred CCCCHHHHHHHHHHHHHHHhcccCccChhheEEEEEEcCCCCcEEEEECCCCCe--------------eeeeEEEeCCCc
Confidence 133333444588755 7889999999987 567799999999
Q ss_pred hhhHHHHHHHHHhhcccccccccCCCCCHHHHHHHHHHHH
Q psy9489 216 YADFQYLNDIVKQKILDDDLHNDGFVLKPKSLHSWLTRVL 255 (279)
Q Consensus 216 ~aD~~~l~~~l~~~~~~~~~~ee~~~l~~~~la~~isr~l 255 (279)
..+..+|++.|+++|+.+|+.++..+++.+...|++
T Consensus 164 ----~~~~~~L~~~~~~~ms~~ea~~l~~~~l~~~~~~d~ 199 (209)
T cd01911 164 ----QEAKTFLEKRYKKDLTLEEAIKLALKALKEVLEEDK 199 (209)
T ss_pred ----HHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHhccC
Confidence 999999999999999999999999999999998876
No 23
>KOG0174|consensus
Probab=99.87 E-value=5.3e-23 Score=170.88 Aligned_cols=147 Identities=19% Similarity=0.263 Sum_probs=120.8
Q ss_pred cCccCCccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhccc--------ccc
Q psy9489 93 TPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKI--------TPL 164 (279)
Q Consensus 93 ~~~~~G~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~~~--------~pi 164 (279)
+++++|||++|+.|+|||||+||+|.|.|.++.+|-.+|+.+|+|+++||.||.+||.|.+.+.+++++ +|.
T Consensus 14 ~evstGTTImAv~y~gGVvlGaDSRTs~GayvanRvtDKlT~itD~i~cCRSGSAADtQaiaD~~~Y~L~~~~~q~~~~p 93 (224)
T KOG0174|consen 14 EEVSTGTTIMAVEYDGGVVLGADSRTSTGAYVANRVTDKLTPITDNIYCCRSGSAADTQAIADIVRYHLELYTIQENKPP 93 (224)
T ss_pred cccccCceEEEEEEcCcEEEeccCCccchHHHHhhhcccceeccccEEEecCCchhhHHHHHHHHHHHHHHhhhhcCCCc
Confidence 378899999999999999999999999999999999999999999999999999999999999999733 121
Q ss_pred c--c------------------eeeEEEEEe-CCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHH
Q psy9489 165 T--T------------------GTSVLGLVF-NGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLN 223 (279)
Q Consensus 165 ~--~------------------g~tvlgi~~-~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~ 223 (279)
. . |-.+.|.+. ++|.+++.---|+. ....++++|||+ .+++
T Consensus 94 ~v~~aA~l~r~~~Y~~re~L~AgliVAGwD~~~gGqVY~iplGG~l--------------~rq~~aIgGSGS----tfIY 155 (224)
T KOG0174|consen 94 LVHTAASLFREICYNYREMLSAGLIVAGWDEKEGGQVYSIPLGGSL--------------TRQPFAIGGSGS----TFIY 155 (224)
T ss_pred hHHHHHHHHHHHHHhCHHhhhcceEEeecccccCceEEEeecCceE--------------eecceeeccCCc----eeee
Confidence 1 1 111113332 24455544333322 456799999999 9999
Q ss_pred HHHHhhcccccccccCCCCCHHHHHHHHHHHHhh
Q psy9489 224 DIVKQKILDDDLHNDGFVLKPKSLHSWLTRVLYN 257 (279)
Q Consensus 224 ~~l~~~~~~~~~~ee~~~l~~~~la~~isr~lys 257 (279)
++++.+|++.|++||+..+..++++.++.|+--|
T Consensus 156 Gf~D~~~r~nMt~EE~~~fvk~Av~lAi~rDGsS 189 (224)
T KOG0174|consen 156 GFCDANWRPNMTLEECVRFVKNAVSLAIERDGSS 189 (224)
T ss_pred eeehhhcCCCCCHHHHHHHHHHHHHHHHhccCCC
Confidence 9999999999999999999999999999998755
No 24
>cd03755 proteasome_alpha_type_7 proteasome_alpha_type_7. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.87 E-value=3.8e-22 Score=173.30 Aligned_cols=144 Identities=15% Similarity=0.192 Sum_probs=123.3
Q ss_pred CcCcCccCCccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhcc---------
Q psy9489 90 SFSTPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQK--------- 160 (279)
Q Consensus 90 ~~~~~~~~G~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~~--------- 160 (279)
.+++++++|+|+|||+++||||||+|+|.+ ..++.+++.+||++|++|++++++|+.+|++.+.+.++..
T Consensus 19 ya~~av~~G~t~Igik~~dgVvlaad~~~~-~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~ 97 (207)
T cd03755 19 YAQEAVRKGTTAVGVRGKDCVVLGVEKKSV-AKLQDPRTVRKICMLDDHVCLAFAGLTADARVLINRARLECQSHRLTVE 97 (207)
T ss_pred HHHHHHHcCCCEEEEEeCCEEEEEEecCCC-CcccCCCccCcEEEECCCEEEEEecchhhHHHHHHHHHHHHHHHHHHHC
Confidence 456789999999999999999999999955 5677788999999999999999999999999999988851
Q ss_pred ------------------------cccccceeeEEEEEeC-CcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccC
Q psy9489 161 ------------------------ITPLTTGTSVLGLVFN-GGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGND 215 (279)
Q Consensus 161 ------------------------~~pi~~g~tvlgi~~~-~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~ 215 (279)
.+|+.....+.|++.+ ++.|+..|+.|++ ...+..+.|+|+
T Consensus 98 ~~i~~~~la~~ls~~~~~y~~~~~~rP~~vs~ii~G~D~~~~p~Ly~iD~~G~~--------------~~~~~~a~G~gs 163 (207)
T cd03755 98 DPVTVEYITRYIAGLQQRYTQSGGVRPFGISTLIVGFDPDGTPRLYQTDPSGTY--------------SAWKANAIGRNS 163 (207)
T ss_pred CCCCHHHHHHHHHHHHHHHhcccCcccceeEEEEEEEeCCCCeEEEEECCCcCE--------------EcceEEEECCCC
Confidence 1133333344488754 7899999999987 666789999999
Q ss_pred hhhHHHHHHHHHhhcccccccccCCCCCHHHHHHHHH
Q psy9489 216 YADFQYLNDIVKQKILDDDLHNDGFVLKPKSLHSWLT 252 (279)
Q Consensus 216 ~aD~~~l~~~l~~~~~~~~~~ee~~~l~~~~la~~is 252 (279)
+.+..+|+++|+++|+.+|+.++..++|...+.
T Consensus 164 ----~~~~~~Le~~~~~~ms~eeai~l~~~~l~~~~~ 196 (207)
T cd03755 164 ----KTVREFLEKNYKEEMTRDDTIKLAIKALLEVVQ 196 (207)
T ss_pred ----HHHHHHHHhhccCCCCHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999988875
No 25
>KOG0179|consensus
Probab=99.87 E-value=4.5e-22 Score=167.16 Aligned_cols=166 Identities=16% Similarity=0.192 Sum_probs=132.5
Q ss_pred eecCCCCCCCccccCCCcCcCcc-CCccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCccccccc
Q psy9489 74 YHDFPNVLPHYFRRSGSFSTPLT-TGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQY 152 (279)
Q Consensus 74 f~~~~~~~~~~~~~~~~~~~~~~-~G~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~ 152 (279)
++.+|+.... .+.+.+|+|+. +|+|++||++.|+.|||+|||.+.|+.|.+|+.+|||+++|+++++.+|++||+..
T Consensus 6 ~~~~~~~~s~--~~~~~~f~PY~~NGGT~vaIaG~dFavvA~DTR~s~gy~I~sR~~~Ki~~l~D~~vl~~sGF~aD~l~ 83 (235)
T KOG0179|consen 6 IESASGGSSK--TMDHERFSPYEDNGGTTVAIAGEDFAVVAGDTRMSSGYNINSRDQSKIFKLGDNIVLGSSGFYADTLA 83 (235)
T ss_pred eeecCCCccC--ccccccCCccccCCceEEEEcCCceEEEecccccccceeeeccccchheeccCceEEecccchhhHHH
Confidence 4555643222 35667899998 99999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhccc-----------------------------ccccceeeEEEEEeC-CcEEEEEcCCCccCceeeecCCCceE
Q psy9489 153 LNDIVKQKI-----------------------------TPLTTGTSVLGLVFN-GGVILAADSAGYYGSMMRFNDCPRIM 202 (279)
Q Consensus 153 l~~~l~~~~-----------------------------~pi~~g~tvlgi~~~-~gvlia~D~~gs~g~li~~~~~~kI~ 202 (279)
|+..+++.+ -|+...+.+-|++.+ .|.|+..||.|++
T Consensus 84 L~k~i~~r~~~Y~~~h~k~ms~~s~A~lls~~LY~kRFFPYYv~~ilaGiDeeGKG~VySyDPvGsy------------- 150 (235)
T KOG0179|consen 84 LVKVIKSRIKQYEHDHNKKMSIHSAAQLLSTILYSKRFFPYYVFNILAGIDEEGKGAVYSYDPVGSY------------- 150 (235)
T ss_pred HHHHHHHHHHHHhhcccccccHHHHHHHHHHHHhhcccccceeeeeeecccccCceeEEeecCCcce-------------
Confidence 999888521 244455666688865 5899999999998
Q ss_pred EecccEEEEeccChhhHHHHHHHHHhhccc-----------ccccccCCCCCHHHHHHHHHHHHhhcc
Q psy9489 203 QINKFTILGAGNDYADFQYLNDIVKQKILD-----------DDLHNDGFVLKPKSLHSWLTRVLYNRR 259 (279)
Q Consensus 203 ~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~-----------~~~~ee~~~l~~~~la~~isr~lys~r 259 (279)
-...+.++||+. ..+..+|+++... .++++++.+|..++...+.+|++|+..
T Consensus 151 -er~~~~AgGsa~----~mI~PfLDnQi~~kn~~~e~~~~~~Ls~e~ai~lv~d~F~SAaERdI~tGD 213 (235)
T KOG0179|consen 151 -ERVTCRAGGSAA----SMIQPFLDNQIGHKNQNLENAERTPLSLERAIRLVKDAFTSAAERDIYTGD 213 (235)
T ss_pred -eeeeeecCCcch----hhhhhhhhhhccCcCcccccCcccccCHHHHHHHHHHHhhhhhhcccccCC
Confidence 445678888888 8899999887642 234456666666777777777887764
No 26
>TIGR03633 arc_protsome_A proteasome endopeptidase complex, archaeal, alpha subunit. This protein family describes the archaeal proteasome alpha subunit, homologous to both the beta subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.
Probab=99.87 E-value=5e-22 Score=174.52 Aligned_cols=148 Identities=17% Similarity=0.213 Sum_probs=125.4
Q ss_pred CcCcCccCCccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhcc---------
Q psy9489 90 SFSTPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQK--------- 160 (279)
Q Consensus 90 ~~~~~~~~G~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~~--------- 160 (279)
.+++++++|+|+|||+++||||||+|+|.+ ++++..++.+||++|++++++++||..+|++.+.+.++..
T Consensus 21 ya~~av~~G~tvigi~~~dgvvlaad~r~~-~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~ 99 (224)
T TIGR03633 21 YAREAVKRGTTAVGIKTKDGVVLAVDKRIT-SKLVEPSSIEKIFKIDDHIGAATSGLVADARVLIDRARIEAQINRLTYG 99 (224)
T ss_pred HHHHHHHcCCCEEEEEECCEEEEEEeccCC-ccccCCCccceEEEECCCEEEEEeecHHhHHHHHHHHHHHHHHHHHHHC
Confidence 456789999999999999999999999987 7788889999999999999999999999999999887641
Q ss_pred ------------------------cccccceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccCh
Q psy9489 161 ------------------------ITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDY 216 (279)
Q Consensus 161 ------------------------~~pi~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~ 216 (279)
.+|......+.|++..++.|+..|+.|++ ...++.+.|+|+
T Consensus 100 ~~~~~~~la~~ls~~l~~~~~~~~~rP~~v~~ll~G~d~~~~~Ly~~D~~G~~--------------~~~~~~a~G~g~- 164 (224)
T TIGR03633 100 EPIDVETLAKKICDLKQQYTQHGGVRPFGVALLIAGVDDGGPRLFETDPSGAL--------------LEYKATAIGAGR- 164 (224)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCCCccccceEEEEEEEeCCcCEEEEECCCCCe--------------ecceEEEECCCC-
Confidence 01222233344888667899999999987 566789999999
Q ss_pred hhHHHHHHHHHhhcccccccccCCCCCHHHHHHHHHHHHhh
Q psy9489 217 ADFQYLNDIVKQKILDDDLHNDGFVLKPKSLHSWLTRVLYN 257 (279)
Q Consensus 217 aD~~~l~~~l~~~~~~~~~~ee~~~l~~~~la~~isr~lys 257 (279)
..+..+|++.|+++++.+|+.++..+++.++.. +..+
T Consensus 165 ---~~~~~~L~~~~~~~~~~eeai~l~~~al~~~~~-d~~~ 201 (224)
T TIGR03633 165 ---QAVTEFLEKEYREDLSLDEAIELALKALYSAVE-DKLT 201 (224)
T ss_pred ---HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhc-ccCC
Confidence 999999999999999999999999999988776 4433
No 27
>KOG0177|consensus
Probab=99.86 E-value=9.1e-23 Score=168.94 Aligned_cols=76 Identities=26% Similarity=0.308 Sum_probs=71.7
Q ss_pred CccccccccccccCCeeeccccchhhhhhhhhhhcCCCCCCHHHHHHHHHHHHHHHhcc--------ccccCCCCCCCCC
Q psy9489 1 FLGTVDKLGTAYEDKILSFGFGTHIAVPLLRQETEKNPQMSKEEAIALIKTCMDLLYVR--------DARSGAKNGPSLG 72 (279)
Q Consensus 1 ~l~~~d~~~~~~~~~~~~~g~g~~~~~~~l~~~~~~~~~~~~~ea~~l~~~c~~~~~~r--------d~~~~~~~g~~~~ 72 (279)
+|+||||||++.++||+|||||++||+|||||+|+ ||||.|||++|++||+.||++| .++++||+|+...
T Consensus 114 ~L~~iDyla~~~~vpy~~hGy~~~f~~sIlDr~Y~--pdmt~eea~~lmkKCv~El~kRlvin~~~f~v~IVdkdGir~~ 191 (200)
T KOG0177|consen 114 ELYYIDYLATLVSVPYAAHGYGSYFCLSILDRYYK--PDMTIEEALDLMKKCVLELKKRLVINLPGFIVKIVDKDGIRKL 191 (200)
T ss_pred ceeeehhhhhcccCCcccccchhhhhHHHHHhhhC--CCCCHHHHHHHHHHHHHHHHHhcccCCCCcEEEEEcCCCceec
Confidence 58999999999999999999999999999999997 8999999999999999999999 8899999999988
Q ss_pred eeecCC
Q psy9489 73 KYHDFP 78 (279)
Q Consensus 73 ~f~~~~ 78 (279)
...+++
T Consensus 192 ~~i~~~ 197 (200)
T KOG0177|consen 192 DDINFI 197 (200)
T ss_pred cccccc
Confidence 776654
No 28
>PF00227 Proteasome: Proteasome subunit; InterPro: IPR001353 ATP-dependent protease complexes are present in all three kingdoms of life, where they rid the cell of misfolded or damaged proteins and control the level of certain regulatory proteins. They include the proteasome in Eukaryotes, Archaea, and Actinomycetales and the HslVU (ClpQY, clpXP) complex in other eubacteria. Genes homologous to eubacterial HslV (ClpQ) and HslU (ClpY, clpX) have also been demonstrated in to be present in the genome of trypanosomatid protozoa []. The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). The prokaryotic ATP-dependent proteasome is coded for by the heat-shock locus VU (HslVU). It consists of HslV, the protease (MEROPS peptidase subfamily T1B), and HslU, IPR004491 from INTERPRO, the ATPase and chaperone belonging to the AAA/Clp/Hsp100 family. The crystal structure of Thermotoga maritima HslV has been determined to 2.1-A resolution. The structure of the dodecameric enzyme is well conserved compared to those from Escherichia coli and Haemophilus influenzae [, ]. This entry contains threonine peptidases and non-peptidase homologs belong to MEROPS peptidase family T1 (proteasome family, clan PB(T)). The family consists of the protease components of the archaeal and bacterial proteasomes and the alpha and beta subunits of the eukaryotic proteasome. ; GO: 0004298 threonine-type endopeptidase activity, 0051603 proteolysis involved in cellular protein catabolic process, 0005839 proteasome core complex; PDB: 3KRD_1 3H6F_M 2FHH_F 3HF9_F 2FHG_D 3HFA_B 3H6I_K 3MI0_A 3MFE_1 3MKA_F ....
Probab=99.86 E-value=8.8e-22 Score=167.92 Aligned_cols=147 Identities=27% Similarity=0.366 Sum_probs=125.9
Q ss_pred ccCCccEEEEEeCCeEEEEEeCCCccCCceeeCC-CCceEEecCceEeeecCcccccccchhhhhccc------------
Q psy9489 95 LTTGTSVLGLVFNGGVILAADSAGYYGSMMRFND-CPRIMQINKFTILGAGNDYADFQYLNDIVKQKI------------ 161 (279)
Q Consensus 95 ~~~G~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~-~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~~~------------ 161 (279)
|++|+|+|||+++||||||+|+|.+.|+.+..++ .+||++|+++++++++|..+|++.+.+.++...
T Consensus 1 v~~G~t~vgi~~~dgvvla~d~~~~~g~~~~~~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~ 80 (190)
T PF00227_consen 1 VNNGTTVVGIKGKDGVVLAADKRISYGSKLRSPNTVDKIFKINDNIIIGFSGLTADFQYLIRRLREEAQEYRFSYGRPIS 80 (190)
T ss_dssp HHTSBEEEEEEESSEEEEEEEEEEEETTEEEESSTSSSEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHSSGTC
T ss_pred CCCCeEEEEEEECCEEEEEEccccccccccccccccceeeeccCcceeeccccccchHHHHhhhcccchhhhhccCcccc
Confidence 4689999999999999999999999998887666 799999999999999999999999999988510
Q ss_pred ---------------------ccccceeeEEEEEeCC-cEEEEEcCCCccCceeeecCCCceEEecc-cEEEEeccChhh
Q psy9489 162 ---------------------TPLTTGTSVLGLVFNG-GVILAADSAGYYGSMMRFNDCPRIMQINK-FTILGAGNDYAD 218 (279)
Q Consensus 162 ---------------------~pi~~g~tvlgi~~~~-gvlia~D~~gs~g~li~~~~~~kI~~i~~-~~~~~gSG~~aD 218 (279)
+|......+.|++.++ +.|+..|+.|++ ... ++.+.|+|+
T Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~p~~~~~li~G~d~~~~~~l~~vd~~G~~--------------~~~~~~~aiG~g~--- 143 (190)
T PF00227_consen 81 PEYLAKAIASLIQNYTYRSGRRPYGVSLLIAGYDEDGGPQLYSVDPSGSY--------------IECKRFAAIGSGS--- 143 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTSTTSEEEEEEEEETTTEEEEEEEETTSEE--------------EEBSSEEEESTTH---
T ss_pred chhhhhhhHHHHhhhcccccccCccccceeeeeccccccceeeecccccc--------------ccccccccchhcc---
Confidence 1222223344888665 889999999987 566 699999999
Q ss_pred HHHHHHHHHhhcccccccccCCCCCHHHHHHHHHHHHhhcc
Q psy9489 219 FQYLNDIVKQKILDDDLHNDGFVLKPKSLHSWLTRVLYNRR 259 (279)
Q Consensus 219 ~~~l~~~l~~~~~~~~~~ee~~~l~~~~la~~isr~lys~r 259 (279)
+.+..+|++.|+++++++|+.++..+++..+..++..+..
T Consensus 144 -~~~~~~l~~~~~~~~~~~ea~~~~~~~l~~~~~~d~~~~~ 183 (190)
T PF00227_consen 144 -QFAQPILEKLYKPDLSLEEAIELALKALKEAIDRDILSGD 183 (190)
T ss_dssp -HHHHHHHHHHHTTTSSHHHHHHHHHHHHHHHHHHBTTSTS
T ss_pred -hhhhHHHHhhccCCCCHHHHHHHHHHHHHHHHhhCCccCC
Confidence 9999999999999999999999999999999988877654
No 29
>cd01913 protease_HslV Protease HslV and the ATPase/chaperone HslU are part of an ATP-dependent proteolytic system that is the prokaryotic homolog of the proteasome. HslV is a dimer of hexamers (a dodecamer) that forms a central proteolytic chamber with active sites on the interior walls of the cavity. HslV shares significant sequence and structural similarity with the proteasomal beta-subunit and both are members of the Ntn-family of hydrolases. HslV has a nucleophilic threonine residue at its N-terminus that is exposed after processing of the propeptide and is directly involved in active site catalysis.
Probab=99.86 E-value=1.9e-21 Score=163.10 Aligned_cols=138 Identities=15% Similarity=0.127 Sum_probs=115.6
Q ss_pred ccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecC-ceEeeecCcccccccchhhhhccccccc------------
Q psy9489 99 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINK-FTILGAGNDYADFQYLNDIVKQKITPLT------------ 165 (279)
Q Consensus 99 ~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~-~~~~~~sG~~aD~~~l~~~l~~~~~pi~------------ 165 (279)
||++||+++||||||+|+|.+.|.++.+++.+||++|++ |++|+.||..||+|+|.+.++.+.+-..
T Consensus 1 tTivgi~~~dgVvlaaD~r~t~G~~v~~~~~~Ki~~i~d~~i~~~~aG~~aD~~~l~~~~~~~~~~y~~~~~~~aa~l~~ 80 (171)
T cd01913 1 TTILAVRKNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVIAGFAGSTADAFTLFERFEAKLEQYPGNLLRAAVELAK 80 (171)
T ss_pred CeEEEEEECCEEEEEECCceEeccEEEcCCcceEEEeCCCCEEEEecccHHHHHHHHHHHHHHHHHhhchHHHHHHHHHH
Confidence 699999999999999999999999999999999999999 9999999999999999999986321100
Q ss_pred ----------ceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecc--cEEEEeccChhhHHHHHHHHHhhcccc
Q psy9489 166 ----------TGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINK--FTILGAGNDYADFQYLNDIVKQKILDD 233 (279)
Q Consensus 166 ----------~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~--~~~~~gSG~~aD~~~l~~~l~~~~~~~ 233 (279)
..+.++. .+...++..|+.|+. +++ ++.++|||+ .++++.++.+|+++
T Consensus 81 ~l~~~~~~~~l~a~~iv--~~~~~ly~id~~G~~--------------ie~~~~~~a~GSGS----~ya~g~ld~~yk~~ 140 (171)
T cd01913 81 DWRTDRYLRRLEAMLIV--ADKEHTLLISGNGDV--------------IEPDDGIAAIGSGG----NYALAAARALLDHT 140 (171)
T ss_pred HHHhccCcCceEEEEEE--eCCCcEEEECCCCCE--------------eccCCCeEEEeCCH----HHHHHHHHHhhccC
Confidence 1122222 233478888888865 555 599999999 99999999999984
Q ss_pred -cccccCCCCCHHHHHHHHHHHHhhcc
Q psy9489 234 -DLHNDGFVLKPKSLHSWLTRVLYNRR 259 (279)
Q Consensus 234 -~~~ee~~~l~~~~la~~isr~lys~r 259 (279)
|+ +.++..+++..++.|+.+|.-
T Consensus 141 ~ms---~~~la~~Av~~A~~rd~~tg~ 164 (171)
T cd01913 141 DLS---AEEIARKALKIAADICIYTNH 164 (171)
T ss_pred CCC---HHHHHHHHHHHHHhhCcccCC
Confidence 88 349999999999999999864
No 30
>cd03749 proteasome_alpha_type_1 proteasome_alpha_type_1. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.85 E-value=1e-21 Score=171.06 Aligned_cols=144 Identities=14% Similarity=0.137 Sum_probs=120.6
Q ss_pred CcCcCccCCccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhccc--------
Q psy9489 90 SFSTPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKI-------- 161 (279)
Q Consensus 90 ~~~~~~~~G~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~~~-------- 161 (279)
.+++++++|+|+|||+++||||||+|+|.+.+ + .++.+||++|++++++++||+.+|++.+.+.++.+.
T Consensus 19 ya~~av~~G~t~IgIk~~dgVvlaad~r~~~~-l--~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~ 95 (211)
T cd03749 19 YAMEAVKQGSATVGLKSKTHAVLVALKRATSE-L--SSYQKKIFKVDDHIGIAIAGLTADARVLSRYMRQECLNYRFVYD 95 (211)
T ss_pred HHHHHHhcCCCEEEEEeCCEEEEEEeccCccc-c--CCccccEEEeCCCEEEEEEeChHhHHHHHHHHHHHHHHHHHHhC
Confidence 45779999999999999999999999996544 3 457799999999999999999999999999998511
Q ss_pred -------------------------ccccceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccCh
Q psy9489 162 -------------------------TPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDY 216 (279)
Q Consensus 162 -------------------------~pi~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~ 216 (279)
+|+..+..+.|++.+++.|+..|+.|++ ...++.+.|+|+
T Consensus 96 ~~~~v~~la~~is~~~~~~t~~~~~rP~~v~~ii~G~D~~gp~Ly~~Dp~G~~--------------~~~~~~a~G~g~- 160 (211)
T cd03749 96 SPIPVSRLVSKVAEKAQINTQRYGRRPYGVGLLIAGYDESGPHLFQTCPSGNY--------------FEYKATSIGARS- 160 (211)
T ss_pred CCCCHHHHHHHHHHHHHHHhcccCCCCceEEEEEEEEcCCCCeEEEECCCcCE--------------eeeeEEEECCCc-
Confidence 1322233344888778999999999987 666789999999
Q ss_pred hhHHHHHHHHHhhcc--cccccccCCCCCHHHHHHHHHHH
Q psy9489 217 ADFQYLNDIVKQKIL--DDDLHNDGFVLKPKSLHSWLTRV 254 (279)
Q Consensus 217 aD~~~l~~~l~~~~~--~~~~~ee~~~l~~~~la~~isr~ 254 (279)
+.+..+||++|+ ++|+.+|+.++..++|.+++.++
T Consensus 161 ---~~a~~~Le~~~~~~~~ms~ee~i~~~~~~l~~~~~~~ 197 (211)
T cd03749 161 ---QSARTYLERHFEEFEDCSLEELIKHALRALRETLPGE 197 (211)
T ss_pred ---HHHHHHHHHhhccccCCCHHHHHHHHHHHHHHHhccC
Confidence 999999999998 58899998888888888887754
No 31
>cd03753 proteasome_alpha_type_5 proteasome_alpha_type_5. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.85 E-value=1.2e-21 Score=170.77 Aligned_cols=145 Identities=17% Similarity=0.182 Sum_probs=122.7
Q ss_pred CcCcCccCCccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhccc--------
Q psy9489 90 SFSTPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKI-------- 161 (279)
Q Consensus 90 ~~~~~~~~G~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~~~-------- 161 (279)
.+++++++|+|+|||+++||||||+|+|.+. .++..++.+||++|+++++++++|..+|+|.+.+.++...
T Consensus 19 ya~~a~~~G~t~igik~~dgVvlaad~r~~~-~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~ 97 (213)
T cd03753 19 YAIEAIKLGSTAIGIKTKEGVVLAVEKRITS-PLMEPSSVEKIMEIDDHIGCAMSGLIADARTLIDHARVEAQNHRFTYN 97 (213)
T ss_pred HHHHHHhcCCCEEEEEeCCEEEEEEecccCC-cCcCCCccceEEEEcCCEEEEEecCHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4567889999999999999999999999874 6677889999999999999999999999999998887410
Q ss_pred ------------------------------ccccceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEE
Q psy9489 162 ------------------------------TPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILG 211 (279)
Q Consensus 162 ------------------------------~pi~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~ 211 (279)
+|......+.|++.+++.|+..|+.|++ ...++.+.
T Consensus 98 ~~i~~~~~~~~ls~~~~~~~~~~~~~~~~~rP~~v~~ii~G~D~~gp~Ly~vd~~G~~--------------~~~~~~a~ 163 (213)
T cd03753 98 EPMTVESVTQAVSDLALQFGEGDDGKKAMSRPFGVALLIAGVDENGPQLFHTDPSGTF--------------TRCDAKAI 163 (213)
T ss_pred CCCCHHHHHHHHHHHHHHHhCcccccccccccceEEEEEEEEcCCCCEEEEECCCCCe--------------ecccEEEE
Confidence 1222223334887778899999999987 66789999
Q ss_pred eccChhhHHHHHHHHHhhcccccccccCCCCCHHHHHHHHHH
Q psy9489 212 AGNDYADFQYLNDIVKQKILDDDLHNDGFVLKPKSLHSWLTR 253 (279)
Q Consensus 212 gSG~~aD~~~l~~~l~~~~~~~~~~ee~~~l~~~~la~~isr 253 (279)
|+|+ +.+..+|+++|+++++.+|+.++..++|.....+
T Consensus 164 G~~~----~~~~~~L~~~~~~~ls~eeai~l~~~~l~~~~~~ 201 (213)
T cd03753 164 GSGS----EGAQSSLQEKYHKDMTLEEAEKLALSILKQVMEE 201 (213)
T ss_pred CCCc----HHHHHHHHhhccCCCCHHHHHHHHHHHHHHHhcc
Confidence 9999 9999999999999999999999999988876554
No 32
>TIGR03692 ATP_dep_HslV ATP-dependent protease HslVU, peptidase subunit. The ATP-dependent protease HslVU, a complex of hexameric HslU active as a protein-unfolding ATPase and dodecameric HslV, the catalytic threonine protease.
Probab=99.85 E-value=3.9e-21 Score=161.15 Aligned_cols=139 Identities=14% Similarity=0.141 Sum_probs=115.0
Q ss_pred ccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEe-cCceEeeecCcccccccchhhhhcccc---------------
Q psy9489 99 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQI-NKFTILGAGNDYADFQYLNDIVKQKIT--------------- 162 (279)
Q Consensus 99 ~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i-~~~~~~~~sG~~aD~~~l~~~l~~~~~--------------- 162 (279)
||++||+++||||||+|+|.+.|.++.+++.+||++| ++|++++.||..||+|+|.+.++.+.+
T Consensus 1 tTivgi~~~dgVvlaaD~r~s~g~~v~~~~~~Ki~~i~~d~i~~~~aG~~aD~q~l~~~~~~~~~~y~~~~~~~~a~l~~ 80 (171)
T TIGR03692 1 TTILAVRRNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLEEYQGNLTRAAVELAK 80 (171)
T ss_pred CeEEEEEECCEEEEEECCceEeceEEEcCCCCeEEEeCCCCEEEEecchHHHHHHHHHHHHHHHHHccCchHHHHHHHHH
Confidence 6999999999999999999999999999999999999 599999999999999999999997321
Q ss_pred -----ccc--ceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecc--cEEEEeccChhhHHHHHHHHHhhcccc
Q psy9489 163 -----PLT--TGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINK--FTILGAGNDYADFQYLNDIVKQKILDD 233 (279)
Q Consensus 163 -----pi~--~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~--~~~~~gSG~~aD~~~l~~~l~~~~~~~ 233 (279)
|.. ....++. .+...++..|+.|+. +++ ++.++|||+ .++++.++.+|++
T Consensus 81 ~~~~~~~~~~l~a~~iv--~~~~~ly~i~~~G~~--------------ie~~~~~~a~GSGS----~~a~g~ld~~y~~- 139 (171)
T TIGR03692 81 DWRTDRYLRRLEAMLIV--ADKETSLLISGTGDV--------------IEPEDGIAAIGSGG----NYALAAARALLRN- 139 (171)
T ss_pred HHhhcccccccEEEEEE--EcCCCEEEEcCCCcE--------------eccCCCeEEEeCCH----HHHHHHHHHhhhc-
Confidence 100 1122222 234478888888875 553 699999999 9999999999952
Q ss_pred cccccCCCCCHHHHHHHHHHHHhhcc
Q psy9489 234 DLHNDGFVLKPKSLHSWLTRVLYNRR 259 (279)
Q Consensus 234 ~~~ee~~~l~~~~la~~isr~lys~r 259 (279)
+..++.++..+++..++.|+.+|.-
T Consensus 140 -~~~sa~~la~~Av~~A~~rd~~sg~ 164 (171)
T TIGR03692 140 -TDLSAEEIAREALKIAADICIYTNH 164 (171)
T ss_pred -CCCCHHHHHHHHHHHHHhhCccCCC
Confidence 2234899999999999999999864
No 33
>PRK03996 proteasome subunit alpha; Provisional
Probab=99.85 E-value=1.7e-21 Score=173.03 Aligned_cols=145 Identities=17% Similarity=0.220 Sum_probs=123.8
Q ss_pred CcCcCccCCccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhcc---------
Q psy9489 90 SFSTPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQK--------- 160 (279)
Q Consensus 90 ~~~~~~~~G~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~~--------- 160 (279)
.+++++++|+|+|||+++||||||+|+|.+ +.++..++.+||++|+++++++++|..+|++.+.+.++..
T Consensus 28 ya~~av~~G~t~igik~~dgVvlaad~r~~-~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~ 106 (241)
T PRK03996 28 YAREAVKRGTTAVGVKTKDGVVLAVDKRIT-SPLIEPSSIEKIFKIDDHIGAASAGLVADARVLIDRARVEAQINRLTYG 106 (241)
T ss_pred HHHHHHHhCCCEEEEEeCCEEEEEEeccCC-CcccCCCccceEEEEcCCEEEEEcccHHHHHHHHHHHHHHHHHHHHHhC
Confidence 456788999999999999999999999987 7788889999999999999999999999999999887741
Q ss_pred ------------------------cccccceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccCh
Q psy9489 161 ------------------------ITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDY 216 (279)
Q Consensus 161 ------------------------~~pi~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~ 216 (279)
.+|+.....+.|++.+++.|+..|+.|++ ...++.+.|+|+
T Consensus 107 ~~i~~~~la~~ls~~~~~~~~~~~~rP~~~~~ilaG~d~~gp~Ly~id~~G~~--------------~~~~~~a~G~g~- 171 (241)
T PRK03996 107 EPIGVETLTKKICDHKQQYTQHGGVRPFGVALLIAGVDDGGPRLFETDPSGAY--------------LEYKATAIGAGR- 171 (241)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCCCccchheEEEEEEEeCCcCEEEEECCCCCe--------------ecceEEEECCCc-
Confidence 01222233344787667899999999987 566789999999
Q ss_pred hhHHHHHHHHHhhcccccccccCCCCCHHHHHHHHHH
Q psy9489 217 ADFQYLNDIVKQKILDDDLHNDGFVLKPKSLHSWLTR 253 (279)
Q Consensus 217 aD~~~l~~~l~~~~~~~~~~ee~~~l~~~~la~~isr 253 (279)
..+..+|+++|+++++.+|+.++..+++.++..+
T Consensus 172 ---~~~~~~Le~~~~~~~s~eeai~l~~~al~~~~~~ 205 (241)
T PRK03996 172 ---DTVMEFLEKNYKEDLSLEEAIELALKALAKANEG 205 (241)
T ss_pred ---HHHHHHHHHhcccCCCHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999988887654
No 34
>KOG0173|consensus
Probab=99.84 E-value=2.2e-21 Score=167.05 Aligned_cols=149 Identities=16% Similarity=0.240 Sum_probs=126.1
Q ss_pred cCccCCccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhccc---------c-
Q psy9489 93 TPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKI---------T- 162 (279)
Q Consensus 93 ~~~~~G~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~~~---------~- 162 (279)
...++|||++||+||||||++||+|++.|+.+..++++||+.|.++|+||.+|.+||...+.+.+.+++ +
T Consensus 32 ~~tkTGTtIvgv~~k~gvIlgADtRaT~G~IvaDKnC~KIH~ia~~IyccGAGtAADte~vt~m~ss~l~Lh~l~t~R~~ 111 (271)
T KOG0173|consen 32 KATKTGTTIVGVIFKDGVILGADTRATEGPIVADKNCEKIHFIAPNIYCCGAGTAADTEMVTRMISSNLELHRLNTGRKP 111 (271)
T ss_pred cccccCcEEEEEEeCCeEEEeecccccCCCeeecchhHHHhhcccceEEccCCchhhHHHHHHHHHHHHHHHHhccCCCC
Confidence 355799999999999999999999999999999999999999999999999999999999988777532 1
Q ss_pred ccc----------------ceeeEE--EEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHH
Q psy9489 163 PLT----------------TGTSVL--GLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLND 224 (279)
Q Consensus 163 pi~----------------~g~tvl--gi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~ 224 (279)
++. .|+.+| |++..++.++..-+-||.. .-.+.+.|||+ +.++.
T Consensus 112 rVv~A~~mlkQ~LFrYqG~IgA~LiiGGvD~TGpHLy~i~phGStd--------------~~Pf~alGSGs----laAms 173 (271)
T KOG0173|consen 112 RVVTALRMLKQHLFRYQGHIGAALILGGVDPTGPHLYSIHPHGSTD--------------KLPFTALGSGS----LAAMS 173 (271)
T ss_pred ceeeHHHHHHHHHHHhcCcccceeEEccccCCCCceEEEcCCCCcC--------------ccceeeeccch----HHHHH
Confidence 222 123333 6667777777777777662 23589999999 88889
Q ss_pred HHHhhcccccccccCCCCCHHHHHHHHHHHHhhcc
Q psy9489 225 IVKQKILDDDLHNDGFVLKPKSLHSWLTRVLYNRR 259 (279)
Q Consensus 225 ~l~~~~~~~~~~ee~~~l~~~~la~~isr~lys~r 259 (279)
+||..|+++|+.||+.+|..++++.-|.+++.|.-
T Consensus 174 vlEsr~k~dlt~eea~~Lv~eAi~AGi~nDLgSGs 208 (271)
T KOG0173|consen 174 VLESRWKPDLTKEEAIKLVCEAIAAGIFNDLGSGS 208 (271)
T ss_pred HHHHhcCcccCHHHHHHHHHHHHHhhhccccCCCC
Confidence 99999999999999999999999999999998753
No 35
>cd01912 proteasome_beta proteasome beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.84 E-value=1.2e-20 Score=161.06 Aligned_cols=142 Identities=24% Similarity=0.323 Sum_probs=121.7
Q ss_pred ccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhccc-----------------
Q psy9489 99 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKI----------------- 161 (279)
Q Consensus 99 ~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~~~----------------- 161 (279)
||+|||+++||||||+|+|.+.+.++.+++.+|||+|+++++++.+|+.+|++.+.+.++...
T Consensus 1 tt~i~i~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (189)
T cd01912 1 TTIVGIKGKDGVVLAADTRASAGSLVASRNFDKIFKISDNILLGTAGSAADTQALTRLLKRNLRLYELRNGRELSVKAAA 80 (189)
T ss_pred CcEEEEEeCCEEEEEEcCCcccCcEEEcCCcCcEEEccCCEEEEccccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 689999999999999999999999988999999999999999999999999999999887410
Q ss_pred ------------ccccceeeEEEEEe-CCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHh
Q psy9489 162 ------------TPLTTGTSVLGLVF-NGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQ 228 (279)
Q Consensus 162 ------------~pi~~g~tvlgi~~-~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~ 228 (279)
.|......+.|++. .++.|+..|+.|++ ...++++.|+|+ +.+..+|++
T Consensus 81 ~~l~~~~~~~~~~P~~~~~iv~G~d~~~~~~l~~id~~G~~--------------~~~~~~a~G~~~----~~~~~~Le~ 142 (189)
T cd01912 81 NLLSNILYSYRGFPYYVSLIVGGVDKGGGPFLYYVDPLGSL--------------IEAPFVATGSGS----KYAYGILDR 142 (189)
T ss_pred HHHHHHHHhcCCCCeEEEEEEEEEcCCCCeEEEEECCCCCe--------------EecCEEEEcccH----HHHHHHHHh
Confidence 12222223337875 57899999999987 667799999999 999999999
Q ss_pred hcccccccccCCCCCHHHHHHHHHHHHhhc
Q psy9489 229 KILDDDLHNDGFVLKPKSLHSWLTRVLYNR 258 (279)
Q Consensus 229 ~~~~~~~~ee~~~l~~~~la~~isr~lys~ 258 (279)
.|+++++++++.++..+++.+...++..+.
T Consensus 143 ~~~~~~s~~ea~~~~~~~l~~~~~~d~~~~ 172 (189)
T cd01912 143 GYKPDMTLEEAVELVKKAIDSAIERDLSSG 172 (189)
T ss_pred ccCCCCCHHHHHHHHHHHHHHHHHhcCccC
Confidence 999999999999999999998888877654
No 36
>cd03754 proteasome_alpha_type_6 proteasome_alpha_type_6. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.84 E-value=4.3e-21 Score=167.65 Aligned_cols=148 Identities=11% Similarity=0.096 Sum_probs=123.6
Q ss_pred CcCcCcc-CCccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhccc-------
Q psy9489 90 SFSTPLT-TGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKI------- 161 (279)
Q Consensus 90 ~~~~~~~-~G~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~~~------- 161 (279)
.++++++ +|+|+|||+++||||||+|+|.+. +++..++.+||++|+++++++.||+.+|++.+.+.++...
T Consensus 20 ya~~a~~~~g~t~igi~~~d~Vvlaad~r~~~-~~i~~~~~~Ki~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~ 98 (215)
T cd03754 20 YAFKAVKNAGLTSVAVRGKDCAVVVTQKKVPD-KLIDPSTVTHLFRITDEIGCVMTGMIADSRSQVQRARYEAAEFKYKY 98 (215)
T ss_pred hHHHHHhcCCccEEEEEeCCEEEEEEeccccc-cccCCcccCceEEEcCCEEEEEEechhhHHHHHHHHHHHHHHHHHHH
Confidence 5677887 588999999999999999999764 5666678999999999999999999999999999998510
Q ss_pred --------------------------ccccceeeEEEEEe-CCcEEEEEcCCCccCceeeecCCCceEEecccEEEEecc
Q psy9489 162 --------------------------TPLTTGTSVLGLVF-NGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGN 214 (279)
Q Consensus 162 --------------------------~pi~~g~tvlgi~~-~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG 214 (279)
+|+.....+.|++. +++.|+..|+.|++ ...++.+.|+|
T Consensus 99 ~~~i~v~~la~~ls~~~q~yt~~~~~RP~~v~~ii~G~D~~~gp~Ly~~Dp~Gs~--------------~~~~~~a~G~g 164 (215)
T cd03754 99 GYEMPVDVLAKRIADINQVYTQHAYMRPLGVSMILIGIDEELGPQLYKCDPAGYF--------------AGYKATAAGVK 164 (215)
T ss_pred CCCCCHHHHHHHHHHHHHHHhCCCCCcCCeeEEEEEEEeCCCCeEEEEEcCCccE--------------EeEEEEEECCC
Confidence 13333333448884 57899999999988 66789999999
Q ss_pred ChhhHHHHHHHHHhhcccc--c--ccccCCCCCHHHHHHHHHHHHh
Q psy9489 215 DYADFQYLNDIVKQKILDD--D--LHNDGFVLKPKSLHSWLTRVLY 256 (279)
Q Consensus 215 ~~aD~~~l~~~l~~~~~~~--~--~~ee~~~l~~~~la~~isr~ly 256 (279)
+ +.+..+||++|+++ | +.+|+.++..+++.+++.|++.
T Consensus 165 s----~~~~~~Le~~~~~~~~~~~s~eeai~l~~~al~~~~~rd~~ 206 (215)
T cd03754 165 E----QEATNFLEKKLKKKPDLIESYEETVELAISCLQTVLSTDFK 206 (215)
T ss_pred c----HHHHHHHHHHhccccccCCCHHHHHHHHHHHHHHHhcccCC
Confidence 9 99999999999984 5 7889999999999888887643
No 37
>cd03760 proteasome_beta_type_4 proteasome beta type-4 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.82 E-value=8.3e-20 Score=157.39 Aligned_cols=114 Identities=53% Similarity=0.971 Sum_probs=105.4
Q ss_pred ceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhcccccccccCCCCCHH
Q psy9489 166 TGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDLHNDGFVLKPK 245 (279)
Q Consensus 166 ~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~~ee~~~l~~~ 245 (279)
+|+|+|||+++|+|++++|++.+++.++.+++.+|||+++++++++.+|..+|++.+.+.++.+.+..+.++++.+++++
T Consensus 1 ~G~T~igi~~kdgVvlaad~r~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~~ 80 (197)
T cd03760 1 TGTSVIAIKYKDGVIIAADTLGSYGSLARFKNVERIFKVGDNTLLGASGDYADFQYLKRLLDQLVIDDECLDDGHSLSPK 80 (197)
T ss_pred CCceEEEEEeCCcEEEEEcCcccccceeecCCCCcEEEecCcEEEEeCcchHHHHHHHHHHHHHHHHHHHHhCCCCCCHH
Confidence 47899999999999999999998899999999999999999999999999999999999999887644566778899999
Q ss_pred HHHHHHHHHHhhccCCCCccceEEEEEEEeC-CCC
Q psy9489 246 SLHSWLTRVLYNRRSQFDPLWINAFVAGMQN-GEP 279 (279)
Q Consensus 246 ~la~~isr~lys~r~~~~P~~vs~ii~G~D~-~~p 279 (279)
.+++.+++.+|++|.+++||+|++||||||+ ++|
T Consensus 81 ~la~~i~~~~y~~~~~~rP~~v~~iiaG~D~~~gp 115 (197)
T cd03760 81 EIHSYLTRVLYNRRSKMNPLWNTLVVGGVDNEGEP 115 (197)
T ss_pred HHHHHHHHHHHHHhhcCCCceEEEEEEEEcCCCCE
Confidence 9999999999999888999999999999996 565
No 38
>cd01906 proteasome_protease_HslV proteasome_protease_HslV. This group contains the eukaryotic proteosome alpha and beta subunits and the prokaryotic protease hslV subunit. Proteasomes are large multimeric self-compartmentalizing proteases, involved in the clearance of misfolded proteins, the breakdown of regulatory proteins, and the processing of proteins such as the preparation of peptides for immune presentation. Two main proteasomal types are distinguished by their different tertiary structures: the eukaryotic/archeal 20S proteasome and the prokaryotic proteasome-like heat shock protein encoded by heat shock locus V, hslV. The proteasome core particle is a highly conserved cylindrical structure made up of non-identical subunits that have their active sites on the inner walls of a large central cavity. The proteasome subunits of bacteria, archaea, and eukaryotes all share a conserved Ntn (N terminal nucleophile) hydrolase fold and a catalytic mechanism involving an N-terminal nucleo
Probab=99.82 E-value=5.3e-20 Score=155.88 Aligned_cols=141 Identities=26% Similarity=0.298 Sum_probs=120.7
Q ss_pred ccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhccc-----------------
Q psy9489 99 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKI----------------- 161 (279)
Q Consensus 99 ~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~~~----------------- 161 (279)
||+|||+++||||||+|+|.+.+..+.+++.+|||+|+++++++++|..+|++.+.+.++...
T Consensus 1 tt~igi~~~dgvvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (182)
T cd01906 1 TTIVGIKGKDGVVLAADKRVTSGLLVASSTVEKIFKIDDHIGCAFAGLAADAQTLVERLRKEAQLYRLRYGEPIPVEALA 80 (182)
T ss_pred CcEEEEEeCCEEEEEEecccCCcCeecCCCcceEEEECCCEEEEEeeCHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 689999999999999999999888888999999999999999999999999999999988510
Q ss_pred --------------ccccceeeEEEEEe-CCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHH
Q psy9489 162 --------------TPLTTGTSVLGLVF-NGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIV 226 (279)
Q Consensus 162 --------------~pi~~g~tvlgi~~-~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l 226 (279)
.|......+.|++. .++.|+..|+.|++ ...++.+.|+|+ +++..+|
T Consensus 81 ~~l~~~~~~~~~~~~p~~~~~lv~G~d~~~~~~Ly~id~~G~~--------------~~~~~~a~G~g~----~~~~~~L 142 (182)
T cd01906 81 KLLANLLYEYTQSLRPLGVSLLVAGVDEEGGPQLYSVDPSGSY--------------IEYKATAIGSGS----QYALGIL 142 (182)
T ss_pred HHHHHHHHHhCCCccChheEEEEEEEeCCCCcEEEEECCCCCE--------------eeccEEEECCCc----HHHHHHH
Confidence 23323333447875 57899999999987 556899999999 9999999
Q ss_pred HhhcccccccccCCCCCHHHHHHHHHHHHhh
Q psy9489 227 KQKILDDDLHNDGFVLKPKSLHSWLTRVLYN 257 (279)
Q Consensus 227 ~~~~~~~~~~ee~~~l~~~~la~~isr~lys 257 (279)
++.|+++++.+|+..+..+++.....++..+
T Consensus 143 ~~~~~~~~s~~ea~~l~~~~l~~~~~~~~~~ 173 (182)
T cd01906 143 EKLYKPDMTLEEAIELALKALKSALERDLYS 173 (182)
T ss_pred HHHccCCCCHHHHHHHHHHHHHHHHcccCCC
Confidence 9999999999999888888888888876654
No 39
>TIGR03691 20S_bact_alpha proteasome, alpha subunit, bacterial type. Members of this family are the alpha subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In most Actinobacteria (an exception is Propionibacterium acnes), the proteasome is accompanied by a system of tagging proteins for degradation with Pup.
Probab=99.81 E-value=2.6e-20 Score=163.99 Aligned_cols=152 Identities=13% Similarity=0.147 Sum_probs=120.6
Q ss_pred eeecCCCCCCCccccCCCcCcCccCCccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCccccccc
Q psy9489 73 KYHDFPNVLPHYFRRSGSFSTPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQY 152 (279)
Q Consensus 73 ~f~~~~~~~~~~~~~~~~~~~~~~~G~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~ 152 (279)
.||.+|..-- .++...+++++++|+|+|||+++||||||+|++ +++.+||++|+||++|+++|+.+|++.
T Consensus 4 ~~~~~~~~~~--~~~~EYA~kav~~g~T~VGIk~kdgVVLaaek~--------~~~~~KI~~I~d~ig~~~sG~~~D~~~ 73 (228)
T TIGR03691 4 PFYVSPEQIM--RDRAELARKGIARGRSVVVLTYADGILFVAENP--------SRSLHKISELYDRIGFAAVGKYNEFEN 73 (228)
T ss_pred CcccCHHHHH--hhHHHHHHHHHHcCCcEEEEEeCCeEEEEEecC--------CCCcCcEEEecCCEEEEEcCCHHHHHH
Confidence 4666663210 045556788999999999999999999999997 246899999999999999999999999
Q ss_pred chhhhhc---------ccc----------------------cccceeeE--EEEEe--CCcEEEEEcCCCccCceeeecC
Q psy9489 153 LNDIVKQ---------KIT----------------------PLTTGTSV--LGLVF--NGGVILAADSAGYYGSMMRFND 197 (279)
Q Consensus 153 l~~~l~~---------~~~----------------------pi~~g~tv--lgi~~--~~gvlia~D~~gs~g~li~~~~ 197 (279)
+++..+. ... ..+.+.++ .|++. +++.|+.+|+.|++
T Consensus 74 lv~~~r~~a~~~~~~~~~~~~~v~~la~~~tq~~~~~~~~~~RP~gvs~Li~G~d~~~~gp~Ly~vDpsG~~-------- 145 (228)
T TIGR03691 74 LRRAGIRYADMRGYSYDRRDVTGRGLANAYAQTLGTIFTEQQKPYEVEICVAEVGETPDQDQLYRITFDGSI-------- 145 (228)
T ss_pred HHHHHHHHHHHHhhhcCCCCccHHHHHHHHHhhcccccccccCcceEEEEEEEEcCCCCCCEEEEECCCCCc--------
Confidence 9986663 000 01133333 37763 46899999999987
Q ss_pred CCceEEeccc-EEEEeccChhhHHHHHHHHHhhcccccccccCCCCCHHHHHHHHH
Q psy9489 198 CPRIMQINKF-TILGAGNDYADFQYLNDIVKQKILDDDLHNDGFVLKPKSLHSWLT 252 (279)
Q Consensus 198 ~~kI~~i~~~-~~~~gSG~~aD~~~l~~~l~~~~~~~~~~ee~~~l~~~~la~~is 252 (279)
...+ +.+.|+|+ +.+..+|+++|+++|+.+|+.++..++|.+.+.
T Consensus 146 ------~~~~~~~aiG~gs----~~a~~~Lek~y~~~ms~eeai~la~~aL~~~~~ 191 (228)
T TIGR03691 146 ------VDERGFVVMGGTT----EPIATALKESYRDGLSLADALGLAVQALRAGGN 191 (228)
T ss_pred ------eeccceEEECCCh----HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhc
Confidence 5545 79999999 999999999999999999999999999988754
No 40
>cd03750 proteasome_alpha_type_2 proteasome_alpha_type_2. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.80 E-value=2.6e-19 Score=157.59 Aligned_cols=122 Identities=16% Similarity=0.261 Sum_probs=113.0
Q ss_pred hhhcccccccceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhcccccc
Q psy9489 156 IVKQKITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDL 235 (279)
Q Consensus 156 ~l~~~~~pi~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~ 235 (279)
.+++..+++..|+++||++++||||+++|++.+ ++++.+++.+||++++++++++.+|..+|++.+.+.++.+.. .++
T Consensus 16 QveyA~~av~~G~t~igik~~dgVvlaad~~~~-~~l~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~-~~~ 93 (227)
T cd03750 16 QIEYALAAVSSGAPSVGIKAANGVVLATEKKVP-SPLIDESSVHKVEQITPHIGMVYSGMGPDFRVLVKKARKIAQ-QYY 93 (227)
T ss_pred HHHHHHHHHHcCCCEEEEEeCCEEEEEEeecCC-ccccCCCCcceEEEEcCCEEEEEeEcHHhHHHHHHHHHHHHH-HHH
Confidence 466778899999999999999999999999987 688888899999999999999999999999999999999998 788
Q ss_pred cccCCCCCHHHHHHHHHHHH--hhccCCCCccceEEEEEEEeCCCC
Q psy9489 236 HNDGFVLKPKSLHSWLTRVL--YNRRSQFDPLWINAFVAGMQNGEP 279 (279)
Q Consensus 236 ~ee~~~l~~~~la~~isr~l--ys~r~~~~P~~vs~ii~G~D~~~p 279 (279)
+.++.+++++.+++.+++.+ |++|+++|||+|++||||||++||
T Consensus 94 ~~~~~~~~v~~la~~l~~~~~~~t~~~~~rP~~v~~li~G~D~~g~ 139 (227)
T cd03750 94 LVYGEPIPVSQLVREIASVMQEYTQSGGVRPFGVSLLIAGWDEGGP 139 (227)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHhcCCCCCCChheEEEEEEEeCCCC
Confidence 88999999999999999988 777888899999999999997665
No 41
>cd03759 proteasome_beta_type_3 proteasome beta type-3 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.80 E-value=4.3e-19 Score=152.73 Aligned_cols=111 Identities=23% Similarity=0.361 Sum_probs=102.5
Q ss_pred ceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhcccccccccCCCCCHH
Q psy9489 166 TGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDLHNDGFVLKPK 245 (279)
Q Consensus 166 ~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~~ee~~~l~~~ 245 (279)
.|+|+|||+++|||++|+|++.+.+..+..++.+|||+++++++++.||..+|++.+.+.++.+.. .++++++.+++++
T Consensus 2 ~G~t~igik~~dgVvlaad~~~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~-~~~~~~~~~~~~~ 80 (195)
T cd03759 2 NGGAVVAMAGKDCVAIASDLRLGVQQQTVSTDFQKVFRIGDRLYIGLAGLATDVQTLAQKLRFRVN-LYRLREEREIKPK 80 (195)
T ss_pred CCceEEEEEcCCEEEEEEccccccCCEeEecCCCeEEEeCCCEEEEccchHHHHHHHHHHHHHHHH-HHHHHhCCCCCHH
Confidence 588999999999999999999888776777889999999999999999999999999999999988 7888899999999
Q ss_pred HHHHHHHHHHhhccCCCCccceEEEEEEEeC-CCC
Q psy9489 246 SLHSWLTRVLYNRRSQFDPLWINAFVAGMQN-GEP 279 (279)
Q Consensus 246 ~la~~isr~lys~r~~~~P~~vs~ii~G~D~-~~p 279 (279)
.+++.+++.+|++| ++||+|++||||||+ ++|
T Consensus 81 ~la~~l~~~ly~~r--~~P~~v~~ii~G~D~~~~p 113 (195)
T cd03759 81 TFSSLISSLLYEKR--FGPYFVEPVVAGLDPDGKP 113 (195)
T ss_pred HHHHHHHHHHHHhc--CCCceEEEEEEEEcCCCCE
Confidence 99999999999987 679999999999995 445
No 42
>KOG0176|consensus
Probab=99.80 E-value=8.2e-20 Score=152.35 Aligned_cols=148 Identities=16% Similarity=0.176 Sum_probs=127.5
Q ss_pred CcCcCccCCccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhc--------cc
Q psy9489 90 SFSTPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQ--------KI 161 (279)
Q Consensus 90 ~~~~~~~~G~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~--------~~ 161 (279)
++.++++.|+|+|||+.++|||||+++|.+ +.+..+..++||++|++||+|++||+.||++.+++..+- ..
T Consensus 26 YaieAikLGsTaIGv~TkEgVvL~vEKrit-SpLm~p~sveKi~eid~HIgca~SGl~aDarTlve~arv~~qnh~f~Y~ 104 (241)
T KOG0176|consen 26 YAIEAIKLGSTAIGVKTKEGVVLAVEKRIT-SPLMEPSSVEKIVEIDDHIGCAMSGLIADARTLVERARVETQNHWFTYG 104 (241)
T ss_pred hHHHHHhcCCceeeeeccceEEEEEecccc-CcccCchhhhhheehhhceeeeccccccchHHHHHHHHHHhhhceeecC
Confidence 567899999999999999999999999955 899999999999999999999999999999999998873 00
Q ss_pred ccc----------------------------cceeeEE--EEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEE
Q psy9489 162 TPL----------------------------TTGTSVL--GLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILG 211 (279)
Q Consensus 162 ~pi----------------------------~~g~tvl--gi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~ 211 (279)
+++ ++|..+| |++.+++.++..||.|++ +..+.-+.
T Consensus 105 e~i~VEs~tq~v~~LaLrFGe~~~~~~~msRPFGValliAG~D~~gpqL~h~dPSGtf--------------~~~~AKAI 170 (241)
T KOG0176|consen 105 EPISVESLTQAVSDLALRFGEGDDEEAIMSRPFGVALLIAGHDETGPQLYHLDPSGTF--------------IRYKAKAI 170 (241)
T ss_pred CcccHHHHHHHHHHHHhHhCCCcchhhhhcCCcceEEEEeeccCCCceEEEeCCCCce--------------EEecceec
Confidence 111 1444444 888889999999999998 77778889
Q ss_pred eccChhhHHHHHHHHHhhcccccccccCCCCCHHHHHHHHHHHHh
Q psy9489 212 AGNDYADFQYLNDIVKQKILDDDLHNDGFVLKPKSLHSWLTRVLY 256 (279)
Q Consensus 212 gSG~~aD~~~l~~~l~~~~~~~~~~ee~~~l~~~~la~~isr~ly 256 (279)
|||+ .-+.+.|+++|+++++++|+..+....|...+..-+-
T Consensus 171 GSgs----Ega~~~L~~e~~~~ltL~ea~~~~L~iLkqVMeeKl~ 211 (241)
T KOG0176|consen 171 GSGS----EGAESSLQEEYHKDLTLKEAEKIVLKILKQVMEEKLN 211 (241)
T ss_pred cccc----hHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHhcC
Confidence 9999 8889999999999999999999988888888876553
No 43
>cd03757 proteasome_beta_type_1 proteasome beta type-1 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.79 E-value=7.2e-19 Score=153.30 Aligned_cols=111 Identities=24% Similarity=0.380 Sum_probs=104.3
Q ss_pred ceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhcccccccccCCCCCHH
Q psy9489 166 TGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDLHNDGFVLKPK 245 (279)
Q Consensus 166 ~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~~ee~~~l~~~ 245 (279)
.|+|+|||+++|||++|+|++.+++.++..++.+||+++++++++++||..+|++.+.+.++.+.+ .++++++.+++++
T Consensus 7 ~G~Tvigik~~dgVvlaaD~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~-~~~~~~g~~i~~~ 85 (212)
T cd03757 7 NGGTVLAIAGNDFAVIAGDTRLSEGYSILSRDSPKIFKLTDKCVLGSSGFQADILALTKRLKARIK-MYKYSHNKEMSTE 85 (212)
T ss_pred CCccEEEEEcCCEEEEEECCccccCCEeEeCCCCeEEEcCCCEEEEccchHHHHHHHHHHHHHHHH-HHhHHhCCCCCHH
Confidence 789999999999999999999999888888999999999999999999999999999999999987 7888899999999
Q ss_pred HHHHHHHHHHhhccCCCCccceEEEEEEEeC-CCC
Q psy9489 246 SLHSWLTRVLYNRRSQFDPLWINAFVAGMQN-GEP 279 (279)
Q Consensus 246 ~la~~isr~lys~r~~~~P~~vs~ii~G~D~-~~p 279 (279)
.+++.+++.+|++| ++||+|++||||||+ ++|
T Consensus 86 ~la~~ls~~ly~~R--~~P~~~~~iiaG~D~~~~p 118 (212)
T cd03757 86 AIAQLLSTILYSRR--FFPYYVFNILAGIDEEGKG 118 (212)
T ss_pred HHHHHHHHHHHhhc--CCCeEEEEEEEEEcCCCCE
Confidence 99999999999987 689999999999995 444
No 44
>cd03761 proteasome_beta_type_5 proteasome beta type-5 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.79 E-value=1.1e-18 Score=149.42 Aligned_cols=109 Identities=22% Similarity=0.338 Sum_probs=103.1
Q ss_pred eeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhcccccccccCCCCCHHHH
Q psy9489 168 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDLHNDGFVLKPKSL 247 (279)
Q Consensus 168 ~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~~ee~~~l~~~~l 247 (279)
+|+||++++|||++++|++.+++.++.+++.+|||+++++++++.+|..+|++.+.+.++.+.+ .++++++.+++++++
T Consensus 1 tT~igi~~kdgVvla~d~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~-~y~~~~~~~i~~~~l 79 (188)
T cd03761 1 TTTLAFIFQGGVIVAVDSRATAGSYIASQTVKKVIEINPYLLGTMAGGAADCQYWERVLGRECR-LYELRNKERISVAAA 79 (188)
T ss_pred CcEEEEEECCEEEEEEcCCccCCcEEEcCCcceEEEccCcEEEEeCccHHHHHHHHHHHHHHHH-HHHHHHCCCCCHHHH
Confidence 4789999999999999999999889999999999999999999999999999999999999998 788889999999999
Q ss_pred HHHHHHHHhhccCCCCccceEEEEEEEeCCCC
Q psy9489 248 HSWLTRVLYNRRSQFDPLWINAFVAGMQNGEP 279 (279)
Q Consensus 248 a~~isr~lys~r~~~~P~~vs~ii~G~D~~~p 279 (279)
++.+++.+|++| ..||+|++||||||++||
T Consensus 80 a~~ls~~l~~~~--~~~~~v~~li~G~D~~g~ 109 (188)
T cd03761 80 SKLLSNMLYQYK--GMGLSMGTMICGWDKTGP 109 (188)
T ss_pred HHHHHHHHHhcC--CCCeEEEEEEEEEeCCCC
Confidence 999999999987 569999999999998776
No 45
>TIGR03634 arc_protsome_B proteasome endopeptidase complex, archaeal, beta subunit. This protein family describes the archaeal proteasome beta subunit, homologous to both the alpha subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.
Probab=99.79 E-value=1.2e-18 Score=148.64 Aligned_cols=110 Identities=25% Similarity=0.427 Sum_probs=103.3
Q ss_pred eeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhcccccccccCCCCCHHH
Q psy9489 167 GTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDLHNDGFVLKPKS 246 (279)
Q Consensus 167 g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~~ee~~~l~~~~ 246 (279)
|+++||+++++||++++|++.++++++..++.+|||+++++++++.||..+|++.+.+.++.+.+ .++.+++.+++++.
T Consensus 1 G~t~igi~~~dgVvla~d~~~~~~~~i~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~-~~~~~~~~~~~~~~ 79 (185)
T TIGR03634 1 GTTTVGIKCKDGVVLAADKRASMGNFVASKNAKKVFQIDDYIAMTIAGSVGDAQSLVRILKAEAK-LYELRRGRPMSVKA 79 (185)
T ss_pred CCcEEEEEeCCEEEEEEcCcccCCCEEecCCcccEEEcCCCEEEEcCchHHHHHHHHHHHHHHHH-HHHHHHCCCCCHHH
Confidence 57899999999999999999998999999999999999999999999999999999999999887 67778899999999
Q ss_pred HHHHHHHHHhhccCCCCccceEEEEEEEeCCCC
Q psy9489 247 LHSWLTRVLYNRRSQFDPLWINAFVAGMQNGEP 279 (279)
Q Consensus 247 la~~isr~lys~r~~~~P~~vs~ii~G~D~~~p 279 (279)
+++++++.+|..+ ++||+|++||||||++||
T Consensus 80 ~a~~l~~~~~~~~--~rP~~v~~ivaG~d~~g~ 110 (185)
T TIGR03634 80 LATLLSNILNSNR--FFPFIVQLLVGGVDEEGP 110 (185)
T ss_pred HHHHHHHHHHhcC--CCCeEEEEEEEEEeCCCC
Confidence 9999999999875 889999999999998766
No 46
>cd03751 proteasome_alpha_type_3 proteasome_alpha_type_3. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.78 E-value=9.4e-19 Score=152.58 Aligned_cols=122 Identities=16% Similarity=0.222 Sum_probs=110.0
Q ss_pred hhhcccccccceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhcccccc
Q psy9489 156 IVKQKITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDL 235 (279)
Q Consensus 156 ~l~~~~~pi~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~ 235 (279)
.+++.++++..|+++|||+++||||+|+|++.+. .+...++.+||+++++++++++||..+|++.+.+.++.+.+ .++
T Consensus 19 Qveya~~a~~~G~tvIgik~kdgVvla~d~r~~~-~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~-~y~ 96 (212)
T cd03751 19 QVEYANKAVENSGTAIGIRCKDGVVLAVEKLVTS-KLYEPGSNKRIFNVDRHIGIAVAGLLADGRHLVSRAREEAE-NYR 96 (212)
T ss_pred HHHHHHHHHhcCCCEEEEEeCCEEEEEEEccccc-cccCcchhcceeEecCcEEEEEEEChHhHHHHHHHHHHHHH-HHH
Confidence 4567778889999999999999999999999865 67777789999999999999999999999999999999987 788
Q ss_pred cccCCCCCHHHHHHHHHHHH--hhccCCCCccceEEEEEEEeCCCC
Q psy9489 236 HNDGFVLKPKSLHSWLTRVL--YNRRSQFDPLWINAFVAGMQNGEP 279 (279)
Q Consensus 236 ~ee~~~l~~~~la~~isr~l--ys~r~~~~P~~vs~ii~G~D~~~p 279 (279)
++++.+++++.+++.+++.+ |++++++|||+|++||||||++||
T Consensus 97 ~~~~~~~~v~~la~~ls~~~~~~t~~~~~rP~~vs~li~G~D~~gp 142 (212)
T cd03751 97 DNYGTPIPVKVLADRVAMYMHAYTLYSSVRPFGCSVLLGGYDSDGP 142 (212)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHhccCCCcCCceEEEEEEEEeCCcC
Confidence 88999999999999999976 566667889999999999997666
No 47
>PTZ00488 Proteasome subunit beta type-5; Provisional
Probab=99.78 E-value=2.2e-18 Score=153.41 Aligned_cols=117 Identities=18% Similarity=0.290 Sum_probs=108.1
Q ss_pred ccccccceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhcccccccccC
Q psy9489 160 KITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDLHNDG 239 (279)
Q Consensus 160 ~~~pi~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~~ee~ 239 (279)
+.-|++.|+|+|||+++||||+++|++.+++.++..++.+||++++++++++.+|..+|++.+.+.++.+.+ .++++++
T Consensus 32 ~~~~~~~G~T~IgIk~kdgVvlAaD~r~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~lr~~~~-~y~~~~g 110 (247)
T PTZ00488 32 KAIEFAHGTTTLAFKYGGGIIIAVDSKATAGPYIASQSVKKVIEINPTLLGTMAGGAADCSFWERELAMQCR-LYELRNG 110 (247)
T ss_pred cccccCCCceEEEEEeCCEEEEEEecCcccCCEEEcCCcCceEEcCCCEEEEeCcCHHHHHHHHHHHHHHHH-HHHHHHC
Confidence 334788999999999999999999999999999999999999999999999999999999999999999987 7888899
Q ss_pred CCCCHHHHHHHHHHHHhhccCCCCccceEEEEEEEeCCCC
Q psy9489 240 FVLKPKSLHSWLTRVLYNRRSQFDPLWINAFVAGMQNGEP 279 (279)
Q Consensus 240 ~~l~~~~la~~isr~lys~r~~~~P~~vs~ii~G~D~~~p 279 (279)
.+++++.+++.+++.+|++| ..|+.+++||||||++||
T Consensus 111 ~~isv~~la~~ls~~l~~~R--~~~~~v~~iiaG~D~~gp 148 (247)
T PTZ00488 111 ELISVAAASKILANIVWNYK--GMGLSMGTMICGWDKKGP 148 (247)
T ss_pred CCCCHHHHHHHHHHHHHhcC--CCCeeEEEEEEEEeCCCC
Confidence 99999999999999999988 457778899999997766
No 48
>cd03755 proteasome_alpha_type_7 proteasome_alpha_type_7. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.78 E-value=1.5e-18 Score=150.79 Aligned_cols=122 Identities=14% Similarity=0.218 Sum_probs=110.7
Q ss_pred hhhcccccccceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhcccccc
Q psy9489 156 IVKQKITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDL 235 (279)
Q Consensus 156 ~l~~~~~pi~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~ 235 (279)
.+++..+++..|+++||++++|+|++++|++.+ ..++..++.+||++++++++++.||..+|++.+.+.++.+.+ .++
T Consensus 16 Qveya~~av~~G~t~Igik~~dgVvlaad~~~~-~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~-~~~ 93 (207)
T cd03755 16 QVEYAQEAVRKGTTAVGVRGKDCVVLGVEKKSV-AKLQDPRTVRKICMLDDHVCLAFAGLTADARVLINRARLECQ-SHR 93 (207)
T ss_pred HHHHHHHHHHcCCCEEEEEeCCEEEEEEecCCC-CcccCCCccCcEEEECCCEEEEEecchhhHHHHHHHHHHHHH-HHH
Confidence 466777889999999999999999999999854 357777789999999999999999999999999999999998 788
Q ss_pred cccCCCCCHHHHHHHHHHHH--hhccCCCCccceEEEEEEEeC-CCC
Q psy9489 236 HNDGFVLKPKSLHSWLTRVL--YNRRSQFDPLWINAFVAGMQN-GEP 279 (279)
Q Consensus 236 ~ee~~~l~~~~la~~isr~l--ys~r~~~~P~~vs~ii~G~D~-~~p 279 (279)
++++.+++++.+++.+++.+ |++|.++|||+|++||||||+ ++|
T Consensus 94 ~~~~~~i~~~~la~~ls~~~~~y~~~~~~rP~~vs~ii~G~D~~~~p 140 (207)
T cd03755 94 LTVEDPVTVEYITRYIAGLQQRYTQSGGVRPFGISTLIVGFDPDGTP 140 (207)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHhcccCcccceeEEEEEEEeCCCCe
Confidence 88999999999999999999 788888999999999999995 465
No 49
>cd03765 proteasome_beta_bacterial Bacterial proteasome, beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.78 E-value=1.3e-18 Score=153.75 Aligned_cols=140 Identities=16% Similarity=0.213 Sum_probs=112.5
Q ss_pred ccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEec----CceEeeecCcccccccchhhhhcc--------cc-cc-
Q psy9489 99 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQIN----KFTILGAGNDYADFQYLNDIVKQK--------IT-PL- 164 (279)
Q Consensus 99 ~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~----~~~~~~~sG~~aD~~~l~~~l~~~--------~~-pi- 164 (279)
|=+|||+++||||||||+|.+.+ ++..++.+||++|+ +|++|+.||..||+|.+.+.++.+ .+ ++
T Consensus 1 ~~~vGIk~kdGVVLaadkr~~~~-l~~~~~~~KI~~I~~~~d~~I~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~~~~ 79 (236)
T cd03765 1 TYCLGIKLDAGLVFASDSRTNAG-VDNISTYRKMFVFSVPGERVIVLLTAGNLATTQAVISLLQRDLEDPEETNLLNAPT 79 (236)
T ss_pred CeEEEEEeCCeEEEEEccCccCC-CccccccceEEEecCCCCCEEEEEcCCcHHHHHHHHHHHHHHHHhhHHhhCCCCCC
Confidence 34799999999999999997655 44445899999998 899999999999999999988751 11 11
Q ss_pred ----------------------------cceeeEE--EEE-eCCcEEEEEcCCCccCceeeecCCCceEEecc----cEE
Q psy9489 165 ----------------------------TTGTSVL--GLV-FNGGVILAADSAGYYGSMMRFNDCPRIMQINK----FTI 209 (279)
Q Consensus 165 ----------------------------~~g~tvl--gi~-~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~----~~~ 209 (279)
..+.++| |++ .+++.|+.+|+.|++ ++. ++.
T Consensus 80 v~~la~~i~~~l~~~~~q~~~~~~~~~rp~gvslIigG~D~~~Gp~LY~idpsG~~--------------~e~~a~~~~~ 145 (236)
T cd03765 80 MFDAARYVGETLREVQEQDREALKKAGIDFSASFILGGQIKGEEPRLFLIYPQGNF--------------IEATPDTPFL 145 (236)
T ss_pred HHHHHHHHHHHHHHHHhhcccccccCCcceEEEEEEEeEECCCCCEEEEECCCCCE--------------EeecCCCcee
Confidence 1233333 776 457899999999987 332 445
Q ss_pred EEeccChhhHHHHHHHHHhhcccccccccCCCCCHHHHHHHHHHHHhhc
Q psy9489 210 LGAGNDYADFQYLNDIVKQKILDDDLHNDGFVLKPKSLHSWLTRVLYNR 258 (279)
Q Consensus 210 ~~gSG~~aD~~~l~~~l~~~~~~~~~~ee~~~l~~~~la~~isr~lys~ 258 (279)
+.| |+ +++..+|+++|+++|+++|+.++..++|.+.+.|+..+.
T Consensus 146 AiG-~~----~~a~~~Lek~yk~~ms~eeai~la~~al~~a~~rd~~sg 189 (236)
T cd03765 146 QIG-ET----KYGKPILDRVITPDTSLEDAAKCALVSMDSTMRSNLSVG 189 (236)
T ss_pred eeC-Cc----hhhHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhcCCCC
Confidence 666 45 889999999999999999999999999999999988764
No 50
>cd03764 proteasome_beta_archeal Archeal proteasome, beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme for non-lysosomal protein degradation in both the cytosol and the nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are both members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.78 E-value=2.8e-18 Score=146.68 Aligned_cols=109 Identities=24% Similarity=0.382 Sum_probs=102.4
Q ss_pred eeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhcccccccccCCCCCHHHH
Q psy9489 168 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDLHNDGFVLKPKSL 247 (279)
Q Consensus 168 ~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~~ee~~~l~~~~l 247 (279)
+|+||++++|||++++|++.++|+++.+++.+||+.++++++++.+|..+|++.+.+.++.+.+ .+..+++.+++++++
T Consensus 1 tt~iai~~~dgvvia~d~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~-~~~~~~~~~~~~~~l 79 (188)
T cd03764 1 TTTVGIVCKDGVVLAADKRASMGNFIASKNVKKIFQIDDKIAMTIAGSVGDAQSLVRILKAEAR-LYELRRGRPMSIKAL 79 (188)
T ss_pred CcEEEEEeCCEEEEEEccccccCCEEecCCcccEEEccCCEEEEcCccHHHHHHHHHHHHHHHH-HHHHHHCCCCCHHHH
Confidence 4789999999999999999999999999999999999999999999999999999999999887 778888999999999
Q ss_pred HHHHHHHHhhccCCCCccceEEEEEEEeCCCC
Q psy9489 248 HSWLTRVLYNRRSQFDPLWINAFVAGMQNGEP 279 (279)
Q Consensus 248 a~~isr~lys~r~~~~P~~vs~ii~G~D~~~p 279 (279)
++.+++.+|..| ++||+|++||||||+++|
T Consensus 80 ~~~i~~~~~~~~--~~P~~~~~lvaG~d~~~~ 109 (188)
T cd03764 80 ATLLSNILNSSK--YFPYIVQLLIGGVDEEGP 109 (188)
T ss_pred HHHHHHHHHhcC--CCCcEEEEEEEEEeCCCC
Confidence 999999999876 789999999999998665
No 51
>COG0638 PRE1 20S proteasome, alpha and beta subunits [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=2.1e-18 Score=152.66 Aligned_cols=120 Identities=22% Similarity=0.292 Sum_probs=107.8
Q ss_pred cccccccc-eeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhcccccccc
Q psy9489 159 QKITPLTT-GTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDLHN 237 (279)
Q Consensus 159 ~~~~pi~~-g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~~e 237 (279)
+..+++.. |+|+||++++||||+++|++.+++.++..++.+|||++++|++++.||..+|++.+.++++.+.+ .+++.
T Consensus 21 ~a~~a~~~~gtT~vgik~~dgVVlaadkr~t~~~~~~~~~~~Ki~~I~d~i~~~~sG~~aDa~~lv~~~r~~a~-~~~~~ 99 (236)
T COG0638 21 YALEAVKRGGTTTVGIKGKDGVVLAADKRATSGLLIASSNVEKIFKIDDHIGMAIAGLAADAQVLVRYARAEAQ-LYRLR 99 (236)
T ss_pred HHHHHHHcCCceEEEEEecCEEEEEEeccCCCCceecccccceEEEecCCEEEEeccCcHhHHHHHHHHHHHHH-HHHHH
Confidence 34445555 49999999999999999999999989999999999999999999999999999999999998887 78888
Q ss_pred cCCCCCHHHHHHHHHHHHhhccCCCCccceEEEEEEEeCCCC
Q psy9489 238 DGFVLKPKSLHSWLTRVLYNRRSQFDPLWINAFVAGMQNGEP 279 (279)
Q Consensus 238 e~~~l~~~~la~~isr~lys~r~~~~P~~vs~ii~G~D~~~p 279 (279)
++.+++++.+++.+++.++..+...+||+|+++|||+|+++|
T Consensus 100 ~~~~i~v~~la~~ls~~l~~~~~~~rP~gv~~iiaG~d~~~p 141 (236)
T COG0638 100 YGEPISVEALAKLLSNILQEYTQSGRPYGVSLLVAGVDDGGP 141 (236)
T ss_pred hCCCCCHHHHHHHHHHHHHHhccCcccceEEEEEEEEcCCCC
Confidence 999999999999999999877633589999999999998665
No 52
>cd03756 proteasome_alpha_archeal proteasome_alpha_archeal. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.77 E-value=2.7e-18 Score=149.48 Aligned_cols=122 Identities=20% Similarity=0.267 Sum_probs=111.0
Q ss_pred hhhcccccccceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhcccccc
Q psy9489 156 IVKQKITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDL 235 (279)
Q Consensus 156 ~l~~~~~pi~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~ 235 (279)
.+++..+++..|+++||+++++||++++|++.+ +.++..++.+||++++++++++.||..+|++.+.+.++.+.+ .+.
T Consensus 17 Q~eya~~av~~G~t~igik~~dgvvla~d~~~~-~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~l~~~~~-~~~ 94 (211)
T cd03756 17 QVEYAREAVKRGTTALGIKCKEGVVLAVDKRIT-SKLVEPESIEKIYKIDDHVGAATSGLVADARVLIDRARVEAQ-IHR 94 (211)
T ss_pred HHHHHHHHHHcCCCEEEEEECCEEEEEEeccCC-CcccCCCccceEEEEcCCEEEEEecCHHHHHHHHHHHHHHHH-HHH
Confidence 566778889999999999999999999999976 577778899999999999999999999999999999999888 788
Q ss_pred cccCCCCCHHHHHHHHHHHH--hhccCCCCccceEEEEEEEeCCCC
Q psy9489 236 HNDGFVLKPKSLHSWLTRVL--YNRRSQFDPLWINAFVAGMQNGEP 279 (279)
Q Consensus 236 ~ee~~~l~~~~la~~isr~l--ys~r~~~~P~~vs~ii~G~D~~~p 279 (279)
++++.+++++.+++.+++.+ |++++++|||+|++||||||+++|
T Consensus 95 ~~~~~~~~~~~la~~ls~~~~~~~~~~~~rP~~v~~ll~G~D~~~~ 140 (211)
T cd03756 95 LTYGEPIDVEVLVKKICDLKQQYTQHGGVRPFGVALLIAGVDDGGP 140 (211)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHhcCCCCeechhEEEEEEEEeCCCC
Confidence 88899999999999999987 566667899999999999998665
No 53
>TIGR03633 arc_protsome_A proteasome endopeptidase complex, archaeal, alpha subunit. This protein family describes the archaeal proteasome alpha subunit, homologous to both the beta subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.
Probab=99.77 E-value=3.1e-18 Score=150.45 Aligned_cols=122 Identities=19% Similarity=0.276 Sum_probs=110.6
Q ss_pred hhhcccccccceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhcccccc
Q psy9489 156 IVKQKITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDL 235 (279)
Q Consensus 156 ~l~~~~~pi~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~ 235 (279)
.+++..+++..|+++||++++++||+++|++.+ ++++..++.+||++++++++++.||..+|++.+.+.++.+.. .+.
T Consensus 18 Qieya~~av~~G~tvigi~~~dgvvlaad~r~~-~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~-~~~ 95 (224)
T TIGR03633 18 QVEYAREAVKRGTTAVGIKTKDGVVLAVDKRIT-SKLVEPSSIEKIFKIDDHIGAATSGLVADARVLIDRARIEAQ-INR 95 (224)
T ss_pred HHHHHHHHHHcCCCEEEEEECCEEEEEEeccCC-ccccCCCccceEEEECCCEEEEEeecHHhHHHHHHHHHHHHH-HHH
Confidence 466777889999999999999999999999986 677778899999999999999999999999999999998887 677
Q ss_pred cccCCCCCHHHHHHHHHHHH--hhccCCCCccceEEEEEEEeCCCC
Q psy9489 236 HNDGFVLKPKSLHSWLTRVL--YNRRSQFDPLWINAFVAGMQNGEP 279 (279)
Q Consensus 236 ~ee~~~l~~~~la~~isr~l--ys~r~~~~P~~vs~ii~G~D~~~p 279 (279)
++++.+++++.+++.+++.+ |+++++.|||+|++||||+|+++|
T Consensus 96 ~~~~~~~~~~~la~~ls~~l~~~~~~~~~rP~~v~~ll~G~d~~~~ 141 (224)
T TIGR03633 96 LTYGEPIDVETLAKKICDLKQQYTQHGGVRPFGVALLIAGVDDGGP 141 (224)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHhcCCCCccccceEEEEEEEeCCcC
Confidence 88899999999999999987 566667889999999999998765
No 54
>cd03758 proteasome_beta_type_2 proteasome beta type-2 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.76 E-value=6.3e-18 Score=145.29 Aligned_cols=110 Identities=22% Similarity=0.360 Sum_probs=100.7
Q ss_pred eeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhcccccccccCCCCCHHHH
Q psy9489 168 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDLHNDGFVLKPKSL 247 (279)
Q Consensus 168 ~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~~ee~~~l~~~~l 247 (279)
+|++|++++|||++++|++.+++.++.+++.+|||+++++++++.||..+|++.+.+.++.+.. .++++++.+++++.+
T Consensus 2 ~t~igi~~~dgVvlaad~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~-~~~~~~~~~i~~~~l 80 (193)
T cd03758 2 ETLIGIKGKDFVILAADTSAARSILVLKDDEDKIYKLSDHKLMACSGEAGDRLQFAEYIQKNIQ-LYKMRNGYELSPKAA 80 (193)
T ss_pred ceEEEEEeCCEEEEEEcCccccCcEEEecCcccEEEeCCCeEEEEccchHHHHHHHHHHHHHHH-HHHHHhCCCCCHHHH
Confidence 5789999999999999999999999999999999999999999999999999999999999988 688889999999999
Q ss_pred HHHHHHHHhh-ccCCCCccceEEEEEEEeC-CCC
Q psy9489 248 HSWLTRVLYN-RRSQFDPLWINAFVAGMQN-GEP 279 (279)
Q Consensus 248 a~~isr~lys-~r~~~~P~~vs~ii~G~D~-~~p 279 (279)
++.+++.++. .|.+ +||++++||||||+ ++|
T Consensus 81 a~~l~~~~~~~~~~~-rP~~~~~li~G~d~~~~p 113 (193)
T cd03758 81 ANFTRRELAESLRSR-TPYQVNLLLAGYDKVEGP 113 (193)
T ss_pred HHHHHHHHHHHhhcC-CCeEEEEEEEEEcCCCCc
Confidence 9999999853 3433 79999999999995 566
No 55
>cd01911 proteasome_alpha proteasome alpha subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 different alpha and 10 different beta proteasome subunit genes while archaea have one of each.
Probab=99.75 E-value=6.5e-18 Score=146.86 Aligned_cols=122 Identities=16% Similarity=0.238 Sum_probs=109.4
Q ss_pred hhhcccccccceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhcccccc
Q psy9489 156 IVKQKITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDL 235 (279)
Q Consensus 156 ~l~~~~~pi~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~ 235 (279)
.+++..+++..|+++||+++++||++++|++.+. +++..++.+||++++++++++.||..+|++.+.+.++.... .+.
T Consensus 16 q~eya~~~~~~G~tvigi~~~dgVvlaaD~~~~~-~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~-~~~ 93 (209)
T cd01911 16 QVEYALEAVKNGSTAVGIKGKDGVVLAVEKKVTS-KLLDPSSVEKIFKIDDHIGCAVAGLTADARVLVNRARVEAQ-NYR 93 (209)
T ss_pred HHHHHHHHHHcCCCEEEEEECCEEEEEEEecCCc-cccCCcccceEEEecCCeEEEeccCcHhHHHHHHHHHHHHH-HHH
Confidence 4566678888999999999999999999999875 56667899999999999999999999999999999999887 678
Q ss_pred cccCCCCCHHHHHHHHHHHH--hhccCCCCccceEEEEEEEeCC-CC
Q psy9489 236 HNDGFVLKPKSLHSWLTRVL--YNRRSQFDPLWINAFVAGMQNG-EP 279 (279)
Q Consensus 236 ~ee~~~l~~~~la~~isr~l--ys~r~~~~P~~vs~ii~G~D~~-~p 279 (279)
++++.+++++.+++.+++.+ |++|.+.||++|++||||||++ +|
T Consensus 94 ~~~g~~~~~~~la~~ls~~~~~~~~~~~~rP~~v~~iv~G~d~~~~~ 140 (209)
T cd01911 94 YTYGEPIPVEVLVKRIADLAQVYTQYGGVRPFGVSLLIAGYDEEGGP 140 (209)
T ss_pred HHhCCCCCHHHHHHHHHHHHHHHhcccCccChhheEEEEEEcCCCCc
Confidence 88899999999999999987 6777778899999999999964 55
No 56
>PRK03996 proteasome subunit alpha; Provisional
Probab=99.75 E-value=8.6e-18 Score=149.22 Aligned_cols=122 Identities=19% Similarity=0.266 Sum_probs=110.4
Q ss_pred hhhcccccccceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhcccccc
Q psy9489 156 IVKQKITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDL 235 (279)
Q Consensus 156 ~l~~~~~pi~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~ 235 (279)
.+++..+++..|+++||+++++|||+++|++.+ ++++..++.+||+.++++++++.||..+|++.+.+.++.+.. .+.
T Consensus 25 Q~eya~~av~~G~t~igik~~dgVvlaad~r~~-~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~~~~~~-~~~ 102 (241)
T PRK03996 25 QVEYAREAVKRGTTAVGVKTKDGVVLAVDKRIT-SPLIEPSSIEKIFKIDDHIGAASAGLVADARVLIDRARVEAQ-INR 102 (241)
T ss_pred HHHHHHHHHHhCCCEEEEEeCCEEEEEEeccCC-CcccCCCccceEEEEcCCEEEEEcccHHHHHHHHHHHHHHHH-HHH
Confidence 456677888999999999999999999999987 677778899999999999999999999999999999998887 677
Q ss_pred cccCCCCCHHHHHHHHHHHH--hhccCCCCccceEEEEEEEeCCCC
Q psy9489 236 HNDGFVLKPKSLHSWLTRVL--YNRRSQFDPLWINAFVAGMQNGEP 279 (279)
Q Consensus 236 ~ee~~~l~~~~la~~isr~l--ys~r~~~~P~~vs~ii~G~D~~~p 279 (279)
+.++.+++++.+++.+++.+ |+++++.|||+|++||||||++||
T Consensus 103 ~~~~~~i~~~~la~~ls~~~~~~~~~~~~rP~~~~~ilaG~d~~gp 148 (241)
T PRK03996 103 LTYGEPIGVETLTKKICDHKQQYTQHGGVRPFGVALLIAGVDDGGP 148 (241)
T ss_pred HHhCCCCCHHHHHHHHHHHHHHhcCCCCccchheEEEEEEEeCCcC
Confidence 78889999999999999987 566667889999999999998665
No 57
>cd03762 proteasome_beta_type_6 proteasome beta type-6 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.75 E-value=1.7e-17 Score=141.82 Aligned_cols=108 Identities=23% Similarity=0.249 Sum_probs=100.9
Q ss_pred eeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhcccccccccCCCCCHHHH
Q psy9489 168 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDLHNDGFVLKPKSL 247 (279)
Q Consensus 168 ~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~~ee~~~l~~~~l 247 (279)
+|++|++++|||++++|++.++|.++.+++.+||++++++++++.+|..+|++.+.+.++.+.+ .+++.++.+++++.+
T Consensus 1 ~t~igi~~~dgVvla~D~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~-~~~~~~~~~~~~~~~ 79 (188)
T cd03762 1 TTIIAVEYDGGVVLGADSRTSTGSYVANRVTDKLTQLHDRIYCCRSGSAADTQAIADYVRYYLD-MHSIELGEPPLVKTA 79 (188)
T ss_pred CeEEEEEECCeEEEEEcccccCCceEEcCCcccEEEccCCEEEEecccHHHHHHHHHHHHHHHH-HhHHhhCCCCCHHHH
Confidence 4789999999999999999999999999999999999999999999999999999999999988 788889999999999
Q ss_pred HHHHHHHHhhccCCCCccceEEEEEEEeC-CCC
Q psy9489 248 HSWLTRVLYNRRSQFDPLWINAFVAGMQN-GEP 279 (279)
Q Consensus 248 a~~isr~lys~r~~~~P~~vs~ii~G~D~-~~p 279 (279)
++.+++.+|.+| +||+|++||||||+ ++|
T Consensus 80 a~~l~~~~~~~~---~~~~~~~ii~G~d~~~gp 109 (188)
T cd03762 80 ASLFKNLCYNYK---EMLSAGIIVAGWDEQNGG 109 (188)
T ss_pred HHHHHHHHHhcc---ccceeeEEEEEEcCCCCc
Confidence 999999999876 68999999999995 555
No 58
>TIGR03690 20S_bact_beta proteasome, beta subunit, bacterial type. Members of this family are the beta subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In Streptomyces, maturation during proteasome assembly was shown to remove a 53-amino acid propeptide. Most of the length of the propeptide is not included in this model.
Probab=99.74 E-value=2.1e-17 Score=144.80 Aligned_cols=109 Identities=17% Similarity=0.306 Sum_probs=101.4
Q ss_pred eeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhcccccccccCCCCCHHH
Q psy9489 167 GTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDLHNDGFVLKPKS 246 (279)
Q Consensus 167 g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~~ee~~~l~~~~ 246 (279)
|+|+||++++|||++++|++.++|+++.+++.+||++++++++++.+|..+|++.+.+.++.+.+ .++++++.+++++.
T Consensus 2 G~T~igi~~kdgVvlaad~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~aD~~~l~~~~r~~~~-~~~~~~~~~i~~~~ 80 (219)
T TIGR03690 2 GTTIVALTYPGGVLMAGDRRATQGNMIASRDVEKVYPTDEYSAVGIAGTAGLAIELVRLFQVELE-HYEKIEGVPLTLDG 80 (219)
T ss_pred CcEEEEEEECCEEEEEECCccccCcEEEcCCcceEEEcCCcEEEEecccHHHHHHHHHHHHHHHH-HHHHHHCCCCCHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999988 78888999999999
Q ss_pred HHHHHHHHHhhc-cCCCCccceEEEEEEEeC
Q psy9489 247 LHSWLTRVLYNR-RSQFDPLWINAFVAGMQN 276 (279)
Q Consensus 247 la~~isr~lys~-r~~~~P~~vs~ii~G~D~ 276 (279)
+++.+++.++.. ...++||+|++||||||+
T Consensus 81 la~~ls~~~~~~~~~~~rp~~v~~iiaG~D~ 111 (219)
T TIGR03690 81 KANRLAAMVRGNLPAAMQGLAVVPLLAGYDL 111 (219)
T ss_pred HHHHHHHHHHhhhhhccCCceEEEEEEEECC
Confidence 999999999753 224789999999999995
No 59
>cd03754 proteasome_alpha_type_6 proteasome_alpha_type_6. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.74 E-value=1.5e-17 Score=145.33 Aligned_cols=122 Identities=10% Similarity=0.126 Sum_probs=108.3
Q ss_pred hhhcccccccc-eeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhccccc
Q psy9489 156 IVKQKITPLTT-GTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDD 234 (279)
Q Consensus 156 ~l~~~~~pi~~-g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~ 234 (279)
.+++.++++.. |+++||++++|+|++++|++.+. +++..++.+||++++++++++.||..+|++.+.+.++.+.+ .+
T Consensus 17 Qveya~~a~~~~g~t~igi~~~d~Vvlaad~r~~~-~~i~~~~~~Ki~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~-~~ 94 (215)
T cd03754 17 QVEYAFKAVKNAGLTSVAVRGKDCAVVVTQKKVPD-KLIDPSTVTHLFRITDEIGCVMTGMIADSRSQVQRARYEAA-EF 94 (215)
T ss_pred HHHhHHHHHhcCCccEEEEEeCCEEEEEEeccccc-cccCCcccCceEEEcCCEEEEEEechhhHHHHHHHHHHHHH-HH
Confidence 45666778764 77999999999999999999765 56666688999999999999999999999999999999998 78
Q ss_pred ccccCCCCCHHHHHHHHHHH--HhhccCCCCccceEEEEEEEeC-CCC
Q psy9489 235 LHNDGFVLKPKSLHSWLTRV--LYNRRSQFDPLWINAFVAGMQN-GEP 279 (279)
Q Consensus 235 ~~ee~~~l~~~~la~~isr~--lys~r~~~~P~~vs~ii~G~D~-~~p 279 (279)
+++++.+++++.+++.+++. +|++|.+.|||+|++||||||+ +||
T Consensus 95 ~~~~~~~i~v~~la~~ls~~~q~yt~~~~~RP~~v~~ii~G~D~~~gp 142 (215)
T cd03754 95 KYKYGYEMPVDVLAKRIADINQVYTQHAYMRPLGVSMILIGIDEELGP 142 (215)
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHhCCCCCcCCeeEEEEEEEeCCCCe
Confidence 89999999999999999986 6888877889999999999995 565
No 60
>KOG0180|consensus
Probab=99.74 E-value=2.5e-18 Score=140.66 Aligned_cols=157 Identities=19% Similarity=0.135 Sum_probs=117.3
Q ss_pred CCccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhcc-----------ccccc
Q psy9489 97 TGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQK-----------ITPLT 165 (279)
Q Consensus 97 ~G~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~~-----------~~pi~ 165 (279)
+|++++|+++|+||.||+|.|....+...+.+.+|||+|.|++++|.+|++.|.|.+.+.++.+ ++|-.
T Consensus 7 nGg~vvAM~gk~cvaIa~D~RlG~q~~tistdf~ki~~igdr~y~GL~glatDvqtl~~~~~fr~nLy~lre~R~i~P~~ 86 (204)
T KOG0180|consen 7 NGGSVVAMAGKNCVAIASDLRLGVQSQTISTDFQKIFKIGDRLYLGLTGLATDVQTLLERLRFRKNLYELREEREIKPET 86 (204)
T ss_pred cCceEEEEeCCceEEEEeccccceeeeeeeccchhheecCCeeEEeccccchhHHHHHHHHHHHHhHHHhhhhcccCcHH
Confidence 8999999999999999999999888888999999999999999999999999999999999862 23322
Q ss_pred ------------------ceeeEEEEEeC-CcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHH
Q psy9489 166 ------------------TGTSVLGLVFN-GGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIV 226 (279)
Q Consensus 166 ------------------~g~tvlgi~~~-~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l 226 (279)
....+.|+... .+-+.+.|..|+. ...+.+++.|+++ .++++.+
T Consensus 87 ~s~mvS~~lYekRfgpYf~~PvVAGl~~~~kPfIc~mD~IGc~-------------~~~~DFVvsGTa~----e~L~GmC 149 (204)
T KOG0180|consen 87 FSSMVSSLLYEKRFGPYFTEPVVAGLDDDNKPFICGMDLIGCI-------------DAPKDFVVSGTAS----EQLYGMC 149 (204)
T ss_pred HHHHHHHHHHHhhcCCcccceeEeccCCCCCeeEeecccccCc-------------CccCCeEEecchH----HHHHHHH
Confidence 22333355433 3445556777654 3567899999999 9999999
Q ss_pred HhhcccccccccCCCCCHHHHHHHHHHHHhhccCCCCccceEEEEEEEeC
Q psy9489 227 KQKILDDDLHNDGFVLKPKSLHSWLTRVLYNRRSQFDPLWINAFVAGMQN 276 (279)
Q Consensus 227 ~~~~~~~~~~ee~~~l~~~~la~~isr~lys~r~~~~P~~vs~ii~G~D~ 276 (279)
|..|+|+|+.++-.+-..+++.+++.|+..| .+++.+-|.+-|+
T Consensus 150 E~ly~pnmepd~LFetisQa~Lna~DRDalS------GwGa~vyiI~kdk 193 (204)
T KOG0180|consen 150 EALYEPNMEPDELFETISQALLNAVDRDALS------GWGAVVYIITKDK 193 (204)
T ss_pred HHhcCCCCCHHHHHHHHHHHHHhHhhhhhhc------cCCeEEEEEccch
Confidence 9999986555444444444444444444443 5777666666553
No 61
>cd03752 proteasome_alpha_type_4 proteasome_alpha_type_4. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.74 E-value=1.7e-17 Score=144.74 Aligned_cols=123 Identities=15% Similarity=0.156 Sum_probs=109.6
Q ss_pred hhhcccccccceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhcccccc
Q psy9489 156 IVKQKITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDL 235 (279)
Q Consensus 156 ~l~~~~~pi~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~ 235 (279)
.+++..+++..|+++||++++++|++++|++.+.+.++..++.+||++++++++++.||..+|++.+.+.++.+.. .++
T Consensus 18 Qveya~~a~~~G~t~igi~~~dgVvla~d~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~-~~~ 96 (213)
T cd03752 18 QVEYAMEAISHAGTCLGILAKDGIVLAAEKKVTSKLLDQSFSSEKIYKIDDHIACAVAGITSDANILINYARLIAQ-RYL 96 (213)
T ss_pred HHHhHHHHHhcCCCEEEEEeCCEEEEEEEeccCCcccCCCcCcceEEEecCCEEEEEecChHhHHHHHHHHHHHHH-HHH
Confidence 4566778889999999999999999999999887766666799999999999999999999999999999999998 788
Q ss_pred cccCCCCCHHHHHHHHHHHH--hhccCCCCccceEEEEEEEeC-CCC
Q psy9489 236 HNDGFVLKPKSLHSWLTRVL--YNRRSQFDPLWINAFVAGMQN-GEP 279 (279)
Q Consensus 236 ~ee~~~l~~~~la~~isr~l--ys~r~~~~P~~vs~ii~G~D~-~~p 279 (279)
++++.+++++.+++.++..+ |++..+.|||+|++||+|||+ +||
T Consensus 97 ~~~~~~i~v~~la~~ls~~~~~~t~~~~~RP~~v~~li~G~D~~~g~ 143 (213)
T cd03752 97 YSYQEPIPVEQLVQRLCDIKQGYTQYGGLRPFGVSFLYAGWDKHYGF 143 (213)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHhcCCCcccceeEEEEEEEeCCCCC
Confidence 88999999999999998865 665556789999999999995 454
No 62
>cd03749 proteasome_alpha_type_1 proteasome_alpha_type_1. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.74 E-value=1.7e-17 Score=144.49 Aligned_cols=120 Identities=16% Similarity=0.174 Sum_probs=106.0
Q ss_pred hhhcccccccceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhcccccc
Q psy9489 156 IVKQKITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDL 235 (279)
Q Consensus 156 ~l~~~~~pi~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~ 235 (279)
.+++.++++..|+++|||+++|+|++++|++.+. .+ .++.+||++++++++++.||..+|++.+.+.++.+.+ .++
T Consensus 16 Qveya~~av~~G~t~IgIk~~dgVvlaad~r~~~-~l--~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~-~~~ 91 (211)
T cd03749 16 QVEYAMEAVKQGSATVGLKSKTHAVLVALKRATS-EL--SSYQKKIFKVDDHIGIAIAGLTADARVLSRYMRQECL-NYR 91 (211)
T ss_pred HHHHHHHHHhcCCCEEEEEeCCEEEEEEeccCcc-cc--CCccccEEEeCCCEEEEEEeChHhHHHHHHHHHHHHH-HHH
Confidence 3566778888999999999999999999998654 33 3466999999999999999999999999999999998 789
Q ss_pred cccCCCCCHHHHHHHHHHHHh--hccCCCCccceEEEEEEEeCCCC
Q psy9489 236 HNDGFVLKPKSLHSWLTRVLY--NRRSQFDPLWINAFVAGMQNGEP 279 (279)
Q Consensus 236 ~ee~~~l~~~~la~~isr~ly--s~r~~~~P~~vs~ii~G~D~~~p 279 (279)
++++.+++++.+++.+++.++ +++.+.|||+|+++|+|||++||
T Consensus 92 ~~~~~~~~v~~la~~is~~~~~~t~~~~~rP~~v~~ii~G~D~~gp 137 (211)
T cd03749 92 FVYDSPIPVSRLVSKVAEKAQINTQRYGRRPYGVGLLIAGYDESGP 137 (211)
T ss_pred HHhCCCCCHHHHHHHHHHHHHHHhcccCCCCceEEEEEEEEcCCCC
Confidence 999999999999999998764 45666789999999999998666
No 63
>KOG0179|consensus
Probab=99.73 E-value=1.5e-17 Score=139.95 Aligned_cols=116 Identities=22% Similarity=0.377 Sum_probs=109.4
Q ss_pred cccccc-ceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhccccccccc
Q psy9489 160 KITPLT-TGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDLHND 238 (279)
Q Consensus 160 ~~~pi~-~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~~ee 238 (279)
+..|+. +|.|+++|...|+.|+|.|++.+.|..+..++.+|||++.+++++++||.+||...+...++.+.+ .|..++
T Consensus 21 ~f~PY~~NGGT~vaIaG~dFavvA~DTR~s~gy~I~sR~~~Ki~~l~D~~vl~~sGF~aD~l~L~k~i~~r~~-~Y~~~h 99 (235)
T KOG0179|consen 21 RFSPYEDNGGTTVAIAGEDFAVVAGDTRMSSGYNINSRDQSKIFKLGDNIVLGSSGFYADTLALVKVIKSRIK-QYEHDH 99 (235)
T ss_pred cCCccccCCceEEEEcCCceEEEecccccccceeeeccccchheeccCceEEecccchhhHHHHHHHHHHHHH-HHhhcc
Confidence 456765 788999999999999999999999999999999999999999999999999999999999999999 788888
Q ss_pred CCCCCHHHHHHHHHHHHhhccCCCCccceEEEEEEEeCCC
Q psy9489 239 GFVLKPKSLHSWLTRVLYNRRSQFDPLWINAFVAGMQNGE 278 (279)
Q Consensus 239 ~~~l~~~~la~~isr~lys~r~~~~P~~vs~ii~G~D~~~ 278 (279)
..+|++.++|+.+++.||++| |+||++..||+|+|++|
T Consensus 100 ~k~ms~~s~A~lls~~LY~kR--FFPYYv~~ilaGiDeeG 137 (235)
T KOG0179|consen 100 NKKMSIHSAAQLLSTILYSKR--FFPYYVFNILAGIDEEG 137 (235)
T ss_pred cccccHHHHHHHHHHHHhhcc--cccceeeeeeecccccC
Confidence 999999999999999999999 99999999999999854
No 64
>cd03763 proteasome_beta_type_7 proteasome beta type-7 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.73 E-value=4e-17 Score=139.75 Aligned_cols=108 Identities=19% Similarity=0.314 Sum_probs=100.7
Q ss_pred eeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhcccccccccCCCCCHHHH
Q psy9489 168 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDLHNDGFVLKPKSL 247 (279)
Q Consensus 168 ~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~~ee~~~l~~~~l 247 (279)
+++|||+++|||++++|++.+++.++..++.+|||+++++++++.+|..+|++.+.+.++.+.+ .++++++.+++++.+
T Consensus 1 tt~igi~~~dgvvlaad~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~-~~~~~~~~~~~~~~~ 79 (189)
T cd03763 1 TTIVGVVFKDGVVLGADTRATEGPIVADKNCEKIHYIAPNIYCCGAGTAADTEAVTNMISSNLE-LHRLNTGRKPRVVTA 79 (189)
T ss_pred CeEEEEEECCeEEEEEcCCcccCceEEcCCccceEEecCCEEEEcCccHHHHHHHHHHHHHHHH-HHHHHhCCCCCHHHH
Confidence 4789999999999999999999989999999999999999999999999999999999999988 778888999999999
Q ss_pred HHHHHHHHhhccCCCCccceEEEEEEEeCCCC
Q psy9489 248 HSWLTRVLYNRRSQFDPLWINAFVAGMQNGEP 279 (279)
Q Consensus 248 a~~isr~lys~r~~~~P~~vs~ii~G~D~~~p 279 (279)
++++++.+|..+ .|++|++||||||++||
T Consensus 80 a~~l~~~l~~~~---~p~~v~~ivaG~d~~g~ 108 (189)
T cd03763 80 LTMLKQHLFRYQ---GHIGAALVLGGVDYTGP 108 (189)
T ss_pred HHHHHHHHHHcC---CccceeEEEEeEcCCCC
Confidence 999999998764 49999999999997766
No 65
>cd03753 proteasome_alpha_type_5 proteasome_alpha_type_5. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.73 E-value=3e-17 Score=143.14 Aligned_cols=122 Identities=17% Similarity=0.241 Sum_probs=108.1
Q ss_pred hhhcccccccceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhcccccc
Q psy9489 156 IVKQKITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDL 235 (279)
Q Consensus 156 ~l~~~~~pi~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~ 235 (279)
.+++..+++..|+++||+++++||++++|++.+. +++..++.+||+.++++++++.||..+|++.+.+.++.+.+ .+.
T Consensus 16 Q~eya~~a~~~G~t~igik~~dgVvlaad~r~~~-~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~-~~~ 93 (213)
T cd03753 16 QVEYAIEAIKLGSTAIGIKTKEGVVLAVEKRITS-PLMEPSSVEKIMEIDDHIGCAMSGLIADARTLIDHARVEAQ-NHR 93 (213)
T ss_pred HHHHHHHHHhcCCCEEEEEeCCEEEEEEecccCC-cCcCCCccceEEEEcCCEEEEEecCHHHHHHHHHHHHHHHH-HHH
Confidence 4566778889999999999999999999999875 66777889999999999999999999999999999999888 678
Q ss_pred cccCCCCCHHHHHHHHHHHHhh--cc-----CCCCccceEEEEEEEeCCCC
Q psy9489 236 HNDGFVLKPKSLHSWLTRVLYN--RR-----SQFDPLWINAFVAGMQNGEP 279 (279)
Q Consensus 236 ~ee~~~l~~~~la~~isr~lys--~r-----~~~~P~~vs~ii~G~D~~~p 279 (279)
+.++.+++++.+++.+++.++. ++ ...+||+|++||||||++||
T Consensus 94 ~~~~~~i~~~~~~~~ls~~~~~~~~~~~~~~~~~rP~~v~~ii~G~D~~gp 144 (213)
T cd03753 94 FTYNEPMTVESVTQAVSDLALQFGEGDDGKKAMSRPFGVALLIAGVDENGP 144 (213)
T ss_pred HHhCCCCCHHHHHHHHHHHHHHHhCcccccccccccceEEEEEEEEcCCCC
Confidence 8889999999999999998864 32 22589999999999998776
No 66
>PTZ00246 proteasome subunit alpha; Provisional
Probab=99.72 E-value=3e-17 Score=146.79 Aligned_cols=123 Identities=15% Similarity=0.116 Sum_probs=108.6
Q ss_pred hhhcccccccceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhcccccc
Q psy9489 156 IVKQKITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDL 235 (279)
Q Consensus 156 ~l~~~~~pi~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~ 235 (279)
.+++.++++..|+++||++++|+||+++|++.+.+.++..++.+||++++++++++.+|..+|++.+.+.++.+.. .+.
T Consensus 20 QvEYA~~av~~g~t~Igik~~dgVvlaad~r~s~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~-~~~ 98 (253)
T PTZ00246 20 QVEYALEAINNASLTVGILCKEGVILGADKPISSKLLDPGKINEKIYKIDSHIFCAVAGLTADANILINQCRLYAQ-RYR 98 (253)
T ss_pred HHHHHHHHHHhCCCEEEEEECCEEEEEEecCCCCcCccCCCCcccEEEecCCEEEEEEEcHHHHHHHHHHHHHHHH-HHH
Confidence 4567778899999999999999999999999988777777789999999999999999999999999999998877 567
Q ss_pred cccCCCCCHHHHHHHHHHHH--hhccCCCCccceEEEEEEEeC-CCC
Q psy9489 236 HNDGFVLKPKSLHSWLTRVL--YNRRSQFDPLWINAFVAGMQN-GEP 279 (279)
Q Consensus 236 ~ee~~~l~~~~la~~isr~l--ys~r~~~~P~~vs~ii~G~D~-~~p 279 (279)
++.+.+++++.+++.++..+ |++++++|||+|++||||||+ ++|
T Consensus 99 ~~~~~~~~v~~l~~~l~~~~q~~~~~~~~rP~~v~~li~G~D~~~gp 145 (253)
T PTZ00246 99 YTYGEPQPVEQLVVQICDLKQSYTQFGGLRPFGVSFLFAGYDENLGY 145 (253)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHhccccCcccCCEEEEEEEEeCCCCc
Confidence 77788899999999988765 566677899999999999994 555
No 67
>cd01912 proteasome_beta proteasome beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.71 E-value=1.3e-16 Score=136.28 Aligned_cols=109 Identities=28% Similarity=0.467 Sum_probs=101.2
Q ss_pred eeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhcccccccccCCCCCHHHH
Q psy9489 168 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDLHNDGFVLKPKSL 247 (279)
Q Consensus 168 ~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~~ee~~~l~~~~l 247 (279)
+++||+++++||++|+|++.+++.....++.+|||+++++++++.+|..+|++.+.+.++.+.. .++.+++.+++++.+
T Consensus 1 tt~i~i~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~-~~~~~~~~~~~~~~l 79 (189)
T cd01912 1 TTIVGIKGKDGVVLAADTRASAGSLVASRNFDKIFKISDNILLGTAGSAADTQALTRLLKRNLR-LYELRNGRELSVKAA 79 (189)
T ss_pred CcEEEEEeCCEEEEEEcCCcccCcEEEcCCcCcEEEccCCEEEEccccHHHHHHHHHHHHHHHH-HHHHHhCCCCCHHHH
Confidence 4789999999999999999999888778999999999999999999999999999999999998 788888999999999
Q ss_pred HHHHHHHHhhccCCCCccceEEEEEEEeC-CCC
Q psy9489 248 HSWLTRVLYNRRSQFDPLWINAFVAGMQN-GEP 279 (279)
Q Consensus 248 a~~isr~lys~r~~~~P~~vs~ii~G~D~-~~p 279 (279)
++.+++.+|.+|. +||++++||||+|+ ++|
T Consensus 80 ~~~l~~~~~~~~~--~P~~~~~iv~G~d~~~~~ 110 (189)
T cd01912 80 ANLLSNILYSYRG--FPYYVSLIVGGVDKGGGP 110 (189)
T ss_pred HHHHHHHHHhcCC--CCeEEEEEEEEEcCCCCe
Confidence 9999999998873 79999999999996 555
No 68
>cd01906 proteasome_protease_HslV proteasome_protease_HslV. This group contains the eukaryotic proteosome alpha and beta subunits and the prokaryotic protease hslV subunit. Proteasomes are large multimeric self-compartmentalizing proteases, involved in the clearance of misfolded proteins, the breakdown of regulatory proteins, and the processing of proteins such as the preparation of peptides for immune presentation. Two main proteasomal types are distinguished by their different tertiary structures: the eukaryotic/archeal 20S proteasome and the prokaryotic proteasome-like heat shock protein encoded by heat shock locus V, hslV. The proteasome core particle is a highly conserved cylindrical structure made up of non-identical subunits that have their active sites on the inner walls of a large central cavity. The proteasome subunits of bacteria, archaea, and eukaryotes all share a conserved Ntn (N terminal nucleophile) hydrolase fold and a catalytic mechanism involving an N-terminal nucleo
Probab=99.69 E-value=3e-16 Score=132.82 Aligned_cols=111 Identities=24% Similarity=0.321 Sum_probs=101.5
Q ss_pred eeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhcccccccccCCCCCHHHH
Q psy9489 168 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDLHNDGFVLKPKSL 247 (279)
Q Consensus 168 ~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~~ee~~~l~~~~l 247 (279)
+++||+++++|+++++|++.+.+.....++.+|||.++++++++.+|..+|++.+.+.++.+.. .+..+++.+++++.+
T Consensus 1 tt~igi~~~dgvvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~-~~~~~~~~~~~~~~l 79 (182)
T cd01906 1 TTIVGIKGKDGVVLAADKRVTSGLLVASSTVEKIFKIDDHIGCAFAGLAADAQTLVERLRKEAQ-LYRLRYGEPIPVEAL 79 (182)
T ss_pred CcEEEEEeCCEEEEEEecccCCcCeecCCCcceEEEECCCEEEEEeeCHHHHHHHHHHHHHHHH-HHHHHhCCCCCHHHH
Confidence 4789999999999999999998877778999999999999999999999999999999999998 677888999999999
Q ss_pred HHHHHHHHhhccCCCCccceEEEEEEEeC-CCC
Q psy9489 248 HSWLTRVLYNRRSQFDPLWINAFVAGMQN-GEP 279 (279)
Q Consensus 248 a~~isr~lys~r~~~~P~~vs~ii~G~D~-~~p 279 (279)
++.+++.++..|...+|+++++++||+|+ ++|
T Consensus 80 ~~~l~~~~~~~~~~~~p~~~~~lv~G~d~~~~~ 112 (182)
T cd01906 80 AKLLANLLYEYTQSLRPLGVSLLVAGVDEEGGP 112 (182)
T ss_pred HHHHHHHHHHhCCCccChheEEEEEEEeCCCCc
Confidence 99999999877644689999999999996 555
No 69
>PF00227 Proteasome: Proteasome subunit; InterPro: IPR001353 ATP-dependent protease complexes are present in all three kingdoms of life, where they rid the cell of misfolded or damaged proteins and control the level of certain regulatory proteins. They include the proteasome in Eukaryotes, Archaea, and Actinomycetales and the HslVU (ClpQY, clpXP) complex in other eubacteria. Genes homologous to eubacterial HslV (ClpQ) and HslU (ClpY, clpX) have also been demonstrated in to be present in the genome of trypanosomatid protozoa []. The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). The prokaryotic ATP-dependent proteasome is coded for by the heat-shock locus VU (HslVU). It consists of HslV, the protease (MEROPS peptidase subfamily T1B), and HslU, IPR004491 from INTERPRO, the ATPase and chaperone belonging to the AAA/Clp/Hsp100 family. The crystal structure of Thermotoga maritima HslV has been determined to 2.1-A resolution. The structure of the dodecameric enzyme is well conserved compared to those from Escherichia coli and Haemophilus influenzae [, ]. This entry contains threonine peptidases and non-peptidase homologs belong to MEROPS peptidase family T1 (proteasome family, clan PB(T)). The family consists of the protease components of the archaeal and bacterial proteasomes and the alpha and beta subunits of the eukaryotic proteasome. ; GO: 0004298 threonine-type endopeptidase activity, 0051603 proteolysis involved in cellular protein catabolic process, 0005839 proteasome core complex; PDB: 3KRD_1 3H6F_M 2FHH_F 3HF9_F 2FHG_D 3HFA_B 3H6I_K 3MI0_A 3MFE_1 3MKA_F ....
Probab=99.67 E-value=3.7e-16 Score=133.17 Aligned_cols=113 Identities=30% Similarity=0.455 Sum_probs=98.0
Q ss_pred cceeeEEEEEeCCcEEEEEcCCCccCceeeecC-CCceEEecccEEEEeccChhhHHHHHHHHHhhcccccccccCCCCC
Q psy9489 165 TTGTSVLGLVFNGGVILAADSAGYYGSMMRFND-CPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDLHNDGFVLK 243 (279)
Q Consensus 165 ~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~-~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~~ee~~~l~ 243 (279)
..|++++|+++++++++++|++.++|+.+..++ .+||++++++++++.||..+|++.+.+.++.+.+ .+++.++.+++
T Consensus 2 ~~G~t~vgi~~~dgvvla~d~~~~~g~~~~~~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~-~~~~~~~~~~~ 80 (190)
T PF00227_consen 2 NNGTTVVGIKGKDGVVLAADKRISYGSKLRSPNTVDKIFKINDNIIIGFSGLTADFQYLIRRLREEAQ-EYRFSYGRPIS 80 (190)
T ss_dssp HTSBEEEEEEESSEEEEEEEEEEEETTEEEESSTSSSEEEEETTEEEEEEESHHHHHHHHHHHHHHHH-HHHHHHSSGTC
T ss_pred CCCeEEEEEEECCEEEEEEccccccccccccccccceeeeccCcceeeccccccchHHHHhhhcccch-hhhhccCcccc
Confidence 478999999999999999999999888887766 6999999999999999999999999999999998 78888999999
Q ss_pred HHHHHHHHHHHH--hhccCCCCccceEEEEEEEeCCC
Q psy9489 244 PKSLHSWLTRVL--YNRRSQFDPLWINAFVAGMQNGE 278 (279)
Q Consensus 244 ~~~la~~isr~l--ys~r~~~~P~~vs~ii~G~D~~~ 278 (279)
++.+++.+.+.+ +.++.+++|+++++++||||+.+
T Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~p~~~~~li~G~d~~~ 117 (190)
T PF00227_consen 81 PEYLAKAIASLIQNYTYRSGRRPYGVSLLIAGYDEDG 117 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTSTTSEEEEEEEEETTT
T ss_pred chhhhhhhHHHHhhhcccccccCccccceeeeecccc
Confidence 996666666544 22334478999999999999653
No 70
>KOG0174|consensus
Probab=99.65 E-value=3.8e-16 Score=130.17 Aligned_cols=111 Identities=23% Similarity=0.292 Sum_probs=105.6
Q ss_pred ccccceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhcccccccccCCC
Q psy9489 162 TPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDLHNDGFV 241 (279)
Q Consensus 162 ~pi~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~~ee~~~ 241 (279)
.++++|++++++.|++||++++|++.+.|.++.++-.+|+.++.++++++-||+.||.|.+.++++.+.. .|+.+++.+
T Consensus 14 ~evstGTTImAv~y~gGVvlGaDSRTs~GayvanRvtDKlT~itD~i~cCRSGSAADtQaiaD~~~Y~L~-~~~~q~~~~ 92 (224)
T KOG0174|consen 14 EEVSTGTTIMAVEYDGGVVLGADSRTSTGAYVANRVTDKLTPITDNIYCCRSGSAADTQAIADIVRYHLE-LYTIQENKP 92 (224)
T ss_pred cccccCceEEEEEEcCcEEEeccCCccchHHHHhhhcccceeccccEEEecCCchhhHHHHHHHHHHHHH-HhhhhcCCC
Confidence 4688999999999999999999999999999999999999999999999999999999999999999888 899999999
Q ss_pred CCHHHHHHHHHHHHhhccCCCCccceEEEEEEEeC
Q psy9489 242 LKPKSLHSWLTRVLYNRRSQFDPLWINAFVAGMQN 276 (279)
Q Consensus 242 l~~~~la~~isr~lys~r~~~~P~~vs~ii~G~D~ 276 (279)
..+...++.+++..|..| ..+..++|+||||+
T Consensus 93 p~v~~aA~l~r~~~Y~~r---e~L~AgliVAGwD~ 124 (224)
T KOG0174|consen 93 PLVHTAASLFREICYNYR---EMLSAGLIVAGWDE 124 (224)
T ss_pred chHHHHHHHHHHHHHhCH---HhhhcceEEeeccc
Confidence 999999999999999988 45899999999996
No 71
>KOG0177|consensus
Probab=99.63 E-value=9.4e-16 Score=127.39 Aligned_cols=142 Identities=15% Similarity=0.173 Sum_probs=120.6
Q ss_pred ccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhcccc-----------c----
Q psy9489 99 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKIT-----------P---- 163 (279)
Q Consensus 99 ~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~~~~-----------p---- 163 (279)
.|++||+++|+|++||||..+.+.++...+.+|++++++++++.++|..+|+.++.+.+.+++. |
T Consensus 2 e~llGIkg~dfvilAsDt~~~~si~~~k~~~dK~~~ls~~~lm~~~Ge~GDt~qF~eyi~~Ni~LYkirnGyeLSp~~aa 81 (200)
T KOG0177|consen 2 ETLLGIKGPDFVILASDTSAARSILVLKDDHDKIHRLSDHILMATVGEAGDTVQFTEYIQKNIQLYKIRNGYELSPSAAA 81 (200)
T ss_pred ceEEEeecCCEEEEeecchhhcceEEecccccceEEeccceeeeeecCCCceehHHHHHHhhhhHHhhhcCCcCCHHHHH
Confidence 4799999999999999999999999999999999999999999999999999999999987431 1
Q ss_pred ----------------ccceeeEE-EEEeC-CcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHH
Q psy9489 164 ----------------LTTGTSVL-GLVFN-GGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDI 225 (279)
Q Consensus 164 ----------------i~~g~tvl-gi~~~-~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~ 225 (279)
+.. ..++ |.+-+ ++-+...|..++. ..-++++.|.|+ .+..++
T Consensus 82 hFtR~~La~~LRsr~~yqV-~~LvaGYd~~~gp~L~~iDyla~~--------------~~vpy~~hGy~~----~f~~sI 142 (200)
T KOG0177|consen 82 HFTRRELAESLRSRTPYQV-NILVAGYDPEEGPELYYIDYLATL--------------VSVPYAAHGYGS----YFCLSI 142 (200)
T ss_pred HHHHHHHHHHHhcCCCceE-EEEEeccCCCCCCceeeehhhhhc--------------ccCCcccccchh----hhhHHH
Confidence 111 1222 55433 5577788888865 556788899999 999999
Q ss_pred HHhhcccccccccCCCCCHHHHHHHHHHHHhhcc
Q psy9489 226 VKQKILDDDLHNDGFVLKPKSLHSWLTRVLYNRR 259 (279)
Q Consensus 226 l~~~~~~~~~~ee~~~l~~~~la~~isr~lys~r 259 (279)
++++|+++|+.++|.++..+++.+.-+|++...+
T Consensus 143 lDr~Y~pdmt~eea~~lmkKCv~El~kRlvin~~ 176 (200)
T KOG0177|consen 143 LDRYYKPDMTIEEALDLMKKCVLELKKRLVINLP 176 (200)
T ss_pred HHhhhCCCCCHHHHHHHHHHHHHHHHHhcccCCC
Confidence 9999999999999999999999999999888765
No 72
>KOG0176|consensus
Probab=99.61 E-value=2e-15 Score=126.20 Aligned_cols=121 Identities=17% Similarity=0.241 Sum_probs=108.6
Q ss_pred hhcccccccceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhccccccc
Q psy9489 157 VKQKITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDLH 236 (279)
Q Consensus 157 l~~~~~pi~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~~ 236 (279)
+++.++++..|+|.||++.++||+++++++.++ +++.+.++.||+.+++|+.|+.||..+|++.+++..+.+.+ ++.+
T Consensus 24 VEYaieAikLGsTaIGv~TkEgVvL~vEKritS-pLm~p~sveKi~eid~HIgca~SGl~aDarTlve~arv~~q-nh~f 101 (241)
T KOG0176|consen 24 VEYAIEAIKLGSTAIGVKTKEGVVLAVEKRITS-PLMEPSSVEKIVEIDDHIGCAMSGLIADARTLVERARVETQ-NHWF 101 (241)
T ss_pred hhhHHHHHhcCCceeeeeccceEEEEEeccccC-cccCchhhhhheehhhceeeeccccccchHHHHHHHHHHhh-hcee
Confidence 456778999999999999999999999999765 89999999999999999999999999999999999999998 8888
Q ss_pred ccCCCCCHHHHHHHHHHHHhh-------ccCCCCccceEEEEEEEeCCCC
Q psy9489 237 NDGFVLKPKSLHSWLTRVLYN-------RRSQFDPLWINAFVAGMQNGEP 279 (279)
Q Consensus 237 ee~~~l~~~~la~~isr~lys-------~r~~~~P~~vs~ii~G~D~~~p 279 (279)
-++++++++.+..+++.+... .+.-.|||+|+++|||+|++||
T Consensus 102 ~Y~e~i~VEs~tq~v~~LaLrFGe~~~~~~~msRPFGValliAG~D~~gp 151 (241)
T KOG0176|consen 102 TYGEPISVESLTQAVSDLALRFGEGDDEEAIMSRPFGVALLIAGHDETGP 151 (241)
T ss_pred ecCCcccHHHHHHHHHHHHhHhCCCcchhhhhcCCcceEEEEeeccCCCc
Confidence 899999999999999987631 2223479999999999998776
No 73
>KOG0184|consensus
Probab=99.61 E-value=8.9e-15 Score=124.36 Aligned_cols=160 Identities=13% Similarity=0.126 Sum_probs=119.9
Q ss_pred CcCcCccCCccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhcc--------c
Q psy9489 90 SFSTPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQK--------I 161 (279)
Q Consensus 90 ~~~~~~~~G~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~~--------~ 161 (279)
.+..++.+++|+||||+|||||+++|+..+ +.+..++..+||+.|++|++++++|+.+|.+++....+.. .
T Consensus 26 YA~KAven~~T~IGIk~kdGVVl~vEKli~-SkLy~p~sn~ri~~V~r~iG~avaGl~~Dg~~l~~~ar~ea~~~~~~y~ 104 (254)
T KOG0184|consen 26 YAQKAVENSGTCIGIKCKDGVVLAVEKLIT-SKLYEPGSNERIFSVDRHIGMAVAGLIPDGRHLVNRARDEAASWRKNYG 104 (254)
T ss_pred HHHHHHhcCCcEEEEecCCeEEEEEeeeec-ccccccCCCCceEeecccccEEEeccccchHHHHHHHHHHHHHHHHhcC
Confidence 456699999999999999999999999955 8888889999999999999999999999999999888741 1
Q ss_pred cccc-----------------------ceeeE-E-EEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccCh
Q psy9489 162 TPLT-----------------------TGTSV-L-GLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDY 216 (279)
Q Consensus 162 ~pi~-----------------------~g~tv-l-gi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~ 216 (279)
.|++ +|.+. + +.+-+++.|+-.|+.|.+ ...+-++.|-|.
T Consensus 105 ~piP~~~la~rva~yvh~~Tly~~vRpfG~~~~~~~yd~~g~~LymiepSG~~--------------~~Y~~aaiGKgr- 169 (254)
T KOG0184|consen 105 DPIPGKHLADRVADYVHAFTLYSSVRPFGASTILGSYDDEGPQLYMIEPSGSS--------------YGYKGAAIGKGR- 169 (254)
T ss_pred CCCchHHHHHHHHhhhheeehhhccccccceEEEEEEeCCCceEEEEcCCCCc--------------cceeeeeccchh-
Confidence 1221 23332 2 556567899999999977 566778888888
Q ss_pred hhHHHHHHHHHhhcccccccccCCCCCHHHHHHHHHHHHhhccC--CCCccceEEEEEEEeC
Q psy9489 217 ADFQYLNDIVKQKILDDDLHNDGFVLKPKSLHSWLTRVLYNRRS--QFDPLWINAFVAGMQN 276 (279)
Q Consensus 217 aD~~~l~~~l~~~~~~~~~~ee~~~l~~~~la~~isr~lys~r~--~~~P~~vs~ii~G~D~ 276 (279)
|.+...|++.-. ..|+.+.+.....+.+|-.+. +-.-|-..+-++|...
T Consensus 170 ---q~aKtElEKL~~--------~~mt~~e~VkeaakIiY~~HDe~KdK~feiEm~wvg~eT 220 (254)
T KOG0184|consen 170 ---QAAKTELEKLKI--------DEMTCKELVKEAAKIIYKVHDENKDKEFEIEMGWVGEET 220 (254)
T ss_pred ---HHHHHHHHhccc--------ccccHHHHHHHHHheeEeecccccCcceEEEEEEEEeec
Confidence 777777664333 278888999888999874321 1123445555555543
No 74
>KOG0175|consensus
Probab=99.58 E-value=5.7e-15 Score=127.94 Aligned_cols=113 Identities=21% Similarity=0.359 Sum_probs=107.8
Q ss_pred ccceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhcccccccccCCCCC
Q psy9489 164 LTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDLHNDGFVLK 243 (279)
Q Consensus 164 i~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~~ee~~~l~ 243 (279)
+..|+|.||+++++|||+|+|++.+.|+++....+.||..|+++..-+.+|..||+++..++|..+++ .+.+.+.+.++
T Consensus 68 ~~hGTTTLAF~f~~GvivAvDSRAs~G~YIasqtv~KVIeIn~ylLGTmAGgAADCqfWer~L~kecR-L~eLRnkeriS 146 (285)
T KOG0175|consen 68 FAHGTTTLAFKFKGGVIVAVDSRASAGSYIASQTVKKVIEINPYLLGTMAGGAADCQFWERVLAKECR-LHELRNKERIS 146 (285)
T ss_pred ecCCceEEEEEecCcEEEEEeccccccceeechhhceeeeechhhhhcccCcchhhHHHHHHHHHHHH-HHHHhcCccee
Confidence 34799999999999999999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred HHHHHHHHHHHHhhccCCCCccceEEEEEEEeCCCC
Q psy9489 244 PKSLHSWLTRVLYNRRSQFDPLWINAFVAGMQNGEP 279 (279)
Q Consensus 244 ~~~la~~isr~lys~r~~~~P~~vs~ii~G~D~~~p 279 (279)
+.+.++.+++.+|.+|+ ..+.+...|+|||+.||
T Consensus 147 VsaASKllsN~~y~YkG--mGLsmGtMi~G~Dk~GP 180 (285)
T KOG0175|consen 147 VSAASKLLSNMVYQYKG--MGLSMGTMIAGWDKKGP 180 (285)
T ss_pred hHHHHHHHHHHHhhccC--cchhheeeEeeccCCCC
Confidence 99999999999999984 47889999999999887
No 75
>cd03765 proteasome_beta_bacterial Bacterial proteasome, beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.57 E-value=2.4e-14 Score=126.52 Aligned_cols=109 Identities=13% Similarity=0.195 Sum_probs=93.5
Q ss_pred eEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEec----ccEEEEeccChhhHHHHHHHHHhhcccccccccCC-CCC
Q psy9489 169 SVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQIN----KFTILGAGNDYADFQYLNDIVKQKILDDDLHNDGF-VLK 243 (279)
Q Consensus 169 tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~----~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~~ee~~-~l~ 243 (279)
-+|||+++||||+++|++.+. +++...+.+||++++ +++++++||..+|++.+.+.++.+.+ .+++..+. +++
T Consensus 2 ~~vGIk~kdGVVLaadkr~~~-~l~~~~~~~KI~~I~~~~d~~I~~~~sG~~aD~~~l~~~~r~~~~-~~~~~~g~~~~~ 79 (236)
T cd03765 2 YCLGIKLDAGLVFASDSRTNA-GVDNISTYRKMFVFSVPGERVIVLLTAGNLATTQAVISLLQRDLE-DPEETNLLNAPT 79 (236)
T ss_pred eEEEEEeCCeEEEEEccCccC-CCccccccceEEEecCCCCCEEEEEcCCcHHHHHHHHHHHHHHHH-hhHHhhCCCCCC
Confidence 468999999999999999765 455555799999998 88999999999999999999999998 78999999 799
Q ss_pred HHHHHHHHHHHHhh---ccC-----CCCccceEEEEEEEe-CCCC
Q psy9489 244 PKSLHSWLTRVLYN---RRS-----QFDPLWINAFVAGMQ-NGEP 279 (279)
Q Consensus 244 ~~~la~~isr~lys---~r~-----~~~P~~vs~ii~G~D-~~~p 279 (279)
++.+++.++..++. +.. +.+||+|++|||||| +.||
T Consensus 80 v~~la~~i~~~l~~~~~q~~~~~~~~~rp~gvslIigG~D~~~Gp 124 (236)
T cd03765 80 MFDAARYVGETLREVQEQDREALKKAGIDFSASFILGGQIKGEEP 124 (236)
T ss_pred HHHHHHHHHHHHHHHHhhcccccccCCcceEEEEEEEeEECCCCC
Confidence 99999999987532 211 247999999999999 4566
No 76
>KOG0184|consensus
Probab=99.57 E-value=9.4e-15 Score=124.22 Aligned_cols=133 Identities=14% Similarity=0.166 Sum_probs=115.8
Q ss_pred ecCcccccccchhhhhcccccccceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHH
Q psy9489 143 AGNDYADFQYLNDIVKQKITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYL 222 (279)
Q Consensus 143 ~sG~~aD~~~l~~~l~~~~~pi~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l 222 (279)
.+=+..|-|.+ .+++..+++..++|+|||++++||++++++.-++ ++..+...+||+.+++|+.++.+|..+|.+++
T Consensus 12 ~s~fSpdGrvf--QveYA~KAven~~T~IGIk~kdGVVl~vEKli~S-kLy~p~sn~ri~~V~r~iG~avaGl~~Dg~~l 88 (254)
T KOG0184|consen 12 ASTFSPDGRVF--QVEYAQKAVENSGTCIGIKCKDGVVLAVEKLITS-KLYEPGSNERIFSVDRHIGMAVAGLIPDGRHL 88 (254)
T ss_pred ceeeCCCCcee--hHHHHHHHHhcCCcEEEEecCCeEEEEEeeeecc-cccccCCCCceEeecccccEEEeccccchHHH
Confidence 34456777766 5677788999999999999999999999998765 88888999999999999999999999999999
Q ss_pred HHHHHhhcccccccccCCCCCHHHHHHHHHHHH--hhccCCCCccceEEEEEEEeCCCC
Q psy9489 223 NDIVKQKILDDDLHNDGFVLKPKSLHSWLTRVL--YNRRSQFDPLWINAFVAGMQNGEP 279 (279)
Q Consensus 223 ~~~l~~~~~~~~~~ee~~~l~~~~la~~isr~l--ys~r~~~~P~~vs~ii~G~D~~~p 279 (279)
....+.+.. .++.+++.+++.+.+++.+...+ +++....|||+++.++++||++||
T Consensus 89 ~~~ar~ea~-~~~~~y~~piP~~~la~rva~yvh~~Tly~~vRpfG~~~~~~~yd~~g~ 146 (254)
T KOG0184|consen 89 VNRARDEAA-SWRKNYGDPIPGKHLADRVADYVHAFTLYSSVRPFGASTILGSYDDEGP 146 (254)
T ss_pred HHHHHHHHH-HHHHhcCCCCchHHHHHHHHhhhheeehhhccccccceEEEEEEeCCCc
Confidence 999999887 67777888999999999999977 355455779999999999998776
No 77
>KOG0178|consensus
Probab=99.56 E-value=3.4e-15 Score=126.00 Aligned_cols=146 Identities=18% Similarity=0.192 Sum_probs=113.5
Q ss_pred CcCcCccCCccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhcc--------c
Q psy9489 90 SFSTPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQK--------I 161 (279)
Q Consensus 90 ~~~~~~~~G~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~~--------~ 161 (279)
.+++++++.+|+|||..+||||||+++|.+.--+-.+-..+||++|+|++.|+++|+.+|+..|++.+|.. .
T Consensus 23 yAmeais~aGt~iGila~DGvvLa~e~k~t~kll~t~~~~EKiY~l~d~iaC~vaGlt~DAnvL~n~aRi~AQ~yl~~y~ 102 (249)
T KOG0178|consen 23 YAMEAISHAGTCIGILASDGVVLAGENKVTSKLLDTSIPMEKIYKLNDNIACAVAGLTSDANVLKNYARIIAQRYLFRYG 102 (249)
T ss_pred HHHHHHhhhcceeEEEecCceEEEeecccchhhhhccccHHHhhhcCCceEEEEecccccHHHHHHHHHHHHHHHHHHhC
Confidence 46788999999999999999999999997644444456789999999999999999999999999888731 1
Q ss_pred ccc-----------------------cceeeEE--EEEeC-CcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccC
Q psy9489 162 TPL-----------------------TTGTSVL--GLVFN-GGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGND 215 (279)
Q Consensus 162 ~pi-----------------------~~g~tvl--gi~~~-~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~ 215 (279)
+++ ++|.++| |.+.+ +..++.+||+|.||+| +..+.|..+
T Consensus 103 e~iP~eqLv~~lcdiKQayTQygG~RPFGVSfLYaGwd~~~gyqLy~SdPSGny~gW--------------ka~ciG~N~ 168 (249)
T KOG0178|consen 103 EEIPCEQLVTFLCDIKQAYTQYGGKRPFGVSFLYAGWDDRYGYQLYQSDPSGNYGGW--------------KATCIGANS 168 (249)
T ss_pred CCCcHHHHHHHHHHHHHHHhhccCcCCCceeeeeeceecCcceEEEecCCCCCcccc--------------ceeeeccch
Confidence 111 2566766 66544 7899999999999765 567777777
Q ss_pred hhhHHHHHHHHHhhcccccc-cccCCCCCHHHHHHHHHH
Q psy9489 216 YADFQYLNDIVKQKILDDDL-HNDGFVLKPKSLHSWLTR 253 (279)
Q Consensus 216 ~aD~~~l~~~l~~~~~~~~~-~ee~~~l~~~~la~~isr 253 (279)
..+.+.|+..|+++.. ++++..+.++.+...+..
T Consensus 169 ----~Aa~s~Lkqdykdd~~~~~eA~~laikvL~kt~d~ 203 (249)
T KOG0178|consen 169 ----GAAQSMLKQDYKDDENDLEEAKALAIKVLSKTLDS 203 (249)
T ss_pred ----HHHHHHHHhhhccccccHHHHHHHHHHHHHhhccc
Confidence 7788999999987655 666666666665555443
No 78
>KOG0181|consensus
Probab=99.54 E-value=4.1e-15 Score=124.09 Aligned_cols=145 Identities=16% Similarity=0.171 Sum_probs=116.3
Q ss_pred CCCcCcCccCCccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhc--------
Q psy9489 88 SGSFSTPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQ-------- 159 (279)
Q Consensus 88 ~~~~~~~~~~G~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~-------- 159 (279)
..+++.++.+|.+.|||+-.||||||++++ ..+.++....++|+++|.+||+|..||+.+|++.+++..++
T Consensus 22 ieyAL~Av~~G~~SvGi~A~nGvVlatekk-~~s~L~~~~sv~KV~~i~~~IG~vYSGmgpD~RvlV~~~rkiAe~Yy~v 100 (233)
T KOG0181|consen 22 IEYALTAVVNGQTSVGIKAANGVVLATEKK-DVSPLVDEESVRKVEKITPHIGCVYSGMGPDYRVLVHKSRKIAEQYYRV 100 (233)
T ss_pred HHHHHHHHhCCCCceeeeecCceEEEeccC-CCCccchhhhhhhHhhccCCcceEEecCCCceeehhhHHHHHHHHHHHH
Confidence 456788999999999999999999999998 44889999999999999999999999999999999988775
Q ss_pred ccccc-----------------------cceeeEE--EEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEecc
Q psy9489 160 KITPL-----------------------TTGTSVL--GLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGN 214 (279)
Q Consensus 160 ~~~pi-----------------------~~g~tvl--gi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG 214 (279)
..+|+ .+|.+++ |...+.+.++.+||.|+| ...+..+.|-+
T Consensus 101 Y~e~~pt~qlv~~~asvmQEyTqsgGvrPFGvslliaG~~~~~p~LyQvdPSGsy--------------f~wkatA~Gkn 166 (233)
T KOG0181|consen 101 YGEPIPTTQLVQEVASVMQEYTQSGGVRPFGVSLLIAGWDEGGPLLYQVDPSGSY--------------FAWKATAMGKN 166 (233)
T ss_pred hcCCCCHHHHHHHHHHHHHHHhhcCCccccceEEEEeecCCCceeEEEECCccce--------------eehhhhhhccC
Confidence 11221 1455554 666678899999999998 55666777778
Q ss_pred ChhhHHHHHHHHHhhcccccccccCCCCCHHHHHHHH
Q psy9489 215 DYADFQYLNDIVKQKILDDDLHNDGFVLKPKSLHSWL 251 (279)
Q Consensus 215 ~~aD~~~l~~~l~~~~~~~~~~ee~~~l~~~~la~~i 251 (279)
. .....+++++|.++++++++....+-.|.+..
T Consensus 167 ~----v~aktFlEkR~~edleldd~ihtailtlkE~f 199 (233)
T KOG0181|consen 167 Y----VNAKTFLEKRYNEDLELDDAIHTAILTLKESF 199 (233)
T ss_pred c----chHHHHHHHHhccccccchHHHHHHHHHHHHh
Confidence 8 77889999999988888876544444444443
No 79
>TIGR03691 20S_bact_alpha proteasome, alpha subunit, bacterial type. Members of this family are the alpha subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In most Actinobacteria (an exception is Propionibacterium acnes), the proteasome is accompanied by a system of tagging proteins for degradation with Pup.
Probab=99.52 E-value=6.5e-14 Score=123.37 Aligned_cols=118 Identities=15% Similarity=0.158 Sum_probs=97.0
Q ss_pred chhhhhcccccccceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhccc
Q psy9489 153 LNDIVKQKITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILD 232 (279)
Q Consensus 153 l~~~l~~~~~pi~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~ 232 (279)
+.+.-++..+++..|+++|||+++||||+++|++- ++.+|||.++++++++.+|..+|++.+.+..+.+++
T Consensus 13 ~~~~~EYA~kav~~g~T~VGIk~kdgVVLaaek~~--------~~~~KI~~I~d~ig~~~sG~~~D~~~lv~~~r~~a~- 83 (228)
T TIGR03691 13 MRDRAELARKGIARGRSVVVLTYADGILFVAENPS--------RSLHKISELYDRIGFAAVGKYNEFENLRRAGIRYAD- 83 (228)
T ss_pred HhhHHHHHHHHHHcCCcEEEEEeCCeEEEEEecCC--------CCcCcEEEecCCEEEEEcCCHHHHHHHHHHHHHHHH-
Confidence 34555667788889999999999999999999962 457999999999999999999999999999888887
Q ss_pred ccccccC-CCCCHHHHHHHHHHHHhh-ccCCCCccceEEEEEEEeC--CCC
Q psy9489 233 DDLHNDG-FVLKPKSLHSWLTRVLYN-RRSQFDPLWINAFVAGMQN--GEP 279 (279)
Q Consensus 233 ~~~~ee~-~~l~~~~la~~isr~lys-~r~~~~P~~vs~ii~G~D~--~~p 279 (279)
.+.+..+ .+++++.+++.+++.+.. .+.+.|||+|++||||||+ +||
T Consensus 84 ~~~~~~~~~~~~v~~la~~~tq~~~~~~~~~~RP~gvs~Li~G~d~~~~gp 134 (228)
T TIGR03691 84 MRGYSYDRRDVTGRGLANAYAQTLGTIFTEQQKPYEVEICVAEVGETPDQD 134 (228)
T ss_pred HHhhhcCCCCccHHHHHHHHHhhcccccccccCcceEEEEEEEEcCCCCCC
Confidence 5555554 689999999888876642 1233679999999999984 455
No 80
>KOG0183|consensus
Probab=99.52 E-value=2e-14 Score=121.60 Aligned_cols=144 Identities=11% Similarity=0.173 Sum_probs=112.2
Q ss_pred CcCcCccCCccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhc-----c----
Q psy9489 90 SFSTPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQ-----K---- 160 (279)
Q Consensus 90 ~~~~~~~~G~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~-----~---- 160 (279)
++++++..|+|++|++++|+|||+.+++ |...+...+.+.||..+++|+++++||+.||++.+++..+- +
T Consensus 22 YAqEAvrkGstaVgvrg~~~vvlgvEkk-Sv~~Lq~~r~~rkI~~ld~hV~mafaGl~aDArilinrArvecqShrlt~e 100 (249)
T KOG0183|consen 22 YAQEAVRKGSTAVGVRGNNCVVLGVEKK-SVPKLQDERTVRKISMLDDHVVMAFAGLTADARILINRARVECQSHRLTLE 100 (249)
T ss_pred hHHHHHhcCceEEEeccCceEEEEEeec-chhhhhhhhhhhhheeecceeeEEecCCCccceeehhhHhHhhhhhhcccC
Confidence 5678999999999999999999999999 77899999999999999999999999999999999988763 0
Q ss_pred ------------------------cccccceeeEEEEEeCC-cEEEEEcCCCccCceeeecCCCceEEecccEEEEeccC
Q psy9489 161 ------------------------ITPLTTGTSVLGLVFNG-GVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGND 215 (279)
Q Consensus 161 ------------------------~~pi~~g~tvlgi~~~~-gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~ 215 (279)
.+|....+.+.|++.++ +.++.+||.|.+ -....-++|-++
T Consensus 101 dpvtveyitRyiA~~kQrYTqs~grRPFGvs~Li~GfD~~g~p~lyqtePsG~f--------------~ewka~aiGr~s 166 (249)
T KOG0183|consen 101 DPVTVEYITRYIAGLKQRYTQSNGRRPFGVSTLIGGFDPDGTPRLYQTEPSGIF--------------SEWKANAIGRSS 166 (249)
T ss_pred CCcHHHHHHHHHHHhhhhhhccCCcccccceEEEEeeCCCCCeeeEeeCCCcch--------------hhhhcccccccc
Confidence 02322233444887654 789999999987 233455566666
Q ss_pred hhhHHHHHHHHHhhcccc--cccccCCCCCHHHHHHHHH
Q psy9489 216 YADFQYLNDIVKQKILDD--DLHNDGFVLKPKSLHSWLT 252 (279)
Q Consensus 216 ~aD~~~l~~~l~~~~~~~--~~~ee~~~l~~~~la~~is 252 (279)
+.+.++|+++|.+. .+..++.+|++++|.+.++
T Consensus 167 ----k~VrEflEK~y~e~~~~~~~~~ikL~ir~LleVvq 201 (249)
T KOG0183|consen 167 ----KTVREFLEKNYKEEAIATEGETIKLAIRALLEVVQ 201 (249)
T ss_pred ----HHHHHHHHHhcccccccccccHHHHHHHHHHHHhh
Confidence 89999999999854 2234556666666666655
No 81
>cd01901 Ntn_hydrolase The Ntn hydrolases (N-terminal nucleophile) are a diverse superfamily of of enzymes that are activated autocatalytically via an N-terminally lcated nucleophilic amino acid. N-terminal nucleophile (NTN-) hydrolase superfamily, which contains a four-layered alpha, beta, beta, alpha core structure. This family of hydrolases includes penicillin acylase, the 20S proteasome alpha and beta subunits, and glutamate synthase. The mechanism of activation of these proteins is conserved, although they differ in their substrate specificities. All known members catalyze the hydrolysis of amide bonds in either proteins or small molecules, and each one of them is synthesized as a preprotein. For each, an autocatalytic endoproteolytic process generates a new N-terminal residue. This mature N-terminal residue is central to catalysis and acts as both a polarizing base and a nucleophile during the reaction. The N-terminal amino group acts as the proton acceptor and activates either t
Probab=99.51 E-value=8.2e-14 Score=114.19 Aligned_cols=131 Identities=21% Similarity=0.196 Sum_probs=105.1
Q ss_pred ccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhccc-----------------
Q psy9489 99 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKI----------------- 161 (279)
Q Consensus 99 ~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~~~----------------- 161 (279)
+|+||++++||||+|+|++.+.+......+..||++++++++++.+|..+|++.+.+.++...
T Consensus 1 ~t~i~i~~~~gvila~d~~~~~~~~~~~~~~~ki~~~~~~~~~~~sG~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (164)
T cd01901 1 STSVAIKGKGGVVLAADKRLSSGLPVAGSPVIKIGKNEDGIAWGLAGLAADAQTLVRRLREALQLYRLRYGEPISVVALA 80 (164)
T ss_pred CcEEEEEeCCEEEEEEecccCccCeecCCCcceEEEecCCeEEEEecChHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 589999999999999999999888887889999999999999999999999999999888522
Q ss_pred -------------ccccceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecc-cEEEEeccChhhHHHHHHHHH
Q psy9489 162 -------------TPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINK-FTILGAGNDYADFQYLNDIVK 227 (279)
Q Consensus 162 -------------~pi~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~-~~~~~gSG~~aD~~~l~~~l~ 227 (279)
.|......+.|.+.+++-++..|+.|+. ... .+.+.|+|+ ..+...++
T Consensus 81 ~~~~~~~~~~~~~~p~~~~~iiag~~~~~~~l~~id~~g~~--------------~~~~~~~~~G~~~----~~~~~~l~ 142 (164)
T cd01901 81 KELAKLLQVYTQGRPFGVNLIVAGVDEGGGNLYYIDPSGPV--------------IENPGAVATGSRS----QRAKSLLE 142 (164)
T ss_pred HHHHHHHHHhcCCCCcceEEEEEEEcCCCCEEEEECCCcCE--------------eecCcEEEECCCC----HHHHHHHH
Confidence 1122222233554456899999999876 445 789999999 99999999
Q ss_pred hhcccccccccCCCCCHHHH
Q psy9489 228 QKILDDDLHNDGFVLKPKSL 247 (279)
Q Consensus 228 ~~~~~~~~~ee~~~l~~~~l 247 (279)
..++++++.+++.++..+++
T Consensus 143 ~~~~~~~~~~~~~~~~~~~l 162 (164)
T cd01901 143 KLYKPDMTLEEAVELALKAL 162 (164)
T ss_pred HHhcCCCCHHHHHHHHHHHH
Confidence 99997777666655544443
No 82
>KOG0180|consensus
Probab=99.47 E-value=1.9e-13 Score=112.20 Aligned_cols=111 Identities=24% Similarity=0.320 Sum_probs=104.4
Q ss_pred ceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhcccccccccCCCCCHH
Q psy9489 166 TGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDLHNDGFVLKPK 245 (279)
Q Consensus 166 ~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~~ee~~~l~~~ 245 (279)
+|++++++..+++|.+|+|.+....+.....+.+|||.+.++.+++.+|...|.+.+.+.++.+.+ .|+++|..++-++
T Consensus 7 nGg~vvAM~gk~cvaIa~D~RlG~q~~tistdf~ki~~igdr~y~GL~glatDvqtl~~~~~fr~n-Ly~lre~R~i~P~ 85 (204)
T KOG0180|consen 7 NGGSVVAMAGKNCVAIASDLRLGVQSQTISTDFQKIFKIGDRLYLGLTGLATDVQTLLERLRFRKN-LYELREEREIKPE 85 (204)
T ss_pred cCceEEEEeCCceEEEEeccccceeeeeeeccchhheecCCeeEEeccccchhHHHHHHHHHHHHh-HHHhhhhcccCcH
Confidence 688999999999999999999888778888999999999999999999999999999999999998 8999999999999
Q ss_pred HHHHHHHHHHhhccCCCCccceEEEEEEEeC-CCC
Q psy9489 246 SLHSWLTRVLYNRRSQFDPLWINAFVAGMQN-GEP 279 (279)
Q Consensus 246 ~la~~isr~lys~r~~~~P~~vs~ii~G~D~-~~p 279 (279)
.+++.++..+|++| |.||.+..++||+|+ ++|
T Consensus 86 ~~s~mvS~~lYekR--fgpYf~~PvVAGl~~~~kP 118 (204)
T KOG0180|consen 86 TFSSMVSSLLYEKR--FGPYFTEPVVAGLDDDNKP 118 (204)
T ss_pred HHHHHHHHHHHHhh--cCCcccceeEeccCCCCCe
Confidence 99999999999999 889999999999986 344
No 83
>KOG0178|consensus
Probab=99.45 E-value=1.7e-13 Score=115.72 Aligned_cols=119 Identities=15% Similarity=0.226 Sum_probs=104.7
Q ss_pred hhcccccccceeeEEEEEeCCcEEEEEcCCCccCceee-ecCCCceEEecccEEEEeccChhhHHHHHHHHHhhcccccc
Q psy9489 157 VKQKITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMR-FNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDL 235 (279)
Q Consensus 157 l~~~~~pi~~g~tvlgi~~~~gvlia~D~~gs~g~li~-~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~ 235 (279)
+++.++.++...++|||..+|||+++.+.+.+. .++. ....+|||+++++++|+.+|..+|+..+.+.++-..+ .+.
T Consensus 21 VEyAmeais~aGt~iGila~DGvvLa~e~k~t~-kll~t~~~~EKiY~l~d~iaC~vaGlt~DAnvL~n~aRi~AQ-~yl 98 (249)
T KOG0178|consen 21 VEYAMEAISHAGTCIGILASDGVVLAGENKVTS-KLLDTSIPMEKIYKLNDNIACAVAGLTSDANVLKNYARIIAQ-RYL 98 (249)
T ss_pred HHHHHHHHhhhcceeEEEecCceEEEeecccch-hhhhccccHHHhhhcCCceEEEEecccccHHHHHHHHHHHHH-HHH
Confidence 445678888999999999999999999887654 4443 3567999999999999999999999999999998888 788
Q ss_pred cccCCCCCHHHHHHHHHHHH--hhccCCCCccceEEEEEEEeCC
Q psy9489 236 HNDGFVLKPKSLHSWLTRVL--YNRRSQFDPLWINAFVAGMQNG 277 (279)
Q Consensus 236 ~ee~~~l~~~~la~~isr~l--ys~r~~~~P~~vs~ii~G~D~~ 277 (279)
...+++++++.|...+...- |++.++.|||+||.+.+|||++
T Consensus 99 ~~y~e~iP~eqLv~~lcdiKQayTQygG~RPFGVSfLYaGwd~~ 142 (249)
T KOG0178|consen 99 FRYGEEIPCEQLVTFLCDIKQAYTQYGGKRPFGVSFLYAGWDDR 142 (249)
T ss_pred HHhCCCCcHHHHHHHHHHHHHHHhhccCcCCCceeeeeeceecC
Confidence 88999999999999998855 8888889999999999999974
No 84
>KOG0183|consensus
Probab=99.41 E-value=4.7e-13 Score=113.39 Aligned_cols=128 Identities=11% Similarity=0.161 Sum_probs=111.0
Q ss_pred ccccccchhhhhcccccccceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHH
Q psy9489 147 YADFQYLNDIVKQKITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIV 226 (279)
Q Consensus 147 ~aD~~~l~~~l~~~~~pi~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l 226 (279)
..|-+-| .+++.++++..|++.+|++.++.++++++++ |...+...+...||..+++|++++.+|..+|+..+++..
T Consensus 12 SPDGhL~--QVEYAqEAvrkGstaVgvrg~~~vvlgvEkk-Sv~~Lq~~r~~rkI~~ld~hV~mafaGl~aDArilinrA 88 (249)
T KOG0183|consen 12 SPDGHLF--QVEYAQEAVRKGSTAVGVRGNNCVVLGVEKK-SVPKLQDERTVRKISMLDDHVVMAFAGLTADARILINRA 88 (249)
T ss_pred CCCCCEE--eeHhHHHHHhcCceEEEeccCceEEEEEeec-chhhhhhhhhhhhheeecceeeEEecCCCccceeehhhH
Confidence 4455444 3466678888999999999999999999988 456888888999999999999999999999999999999
Q ss_pred HhhcccccccccCCCCCHHHHHHHHHHHH--hhccCCCCccceEEEEEEEeCCC
Q psy9489 227 KQKILDDDLHNDGFVLKPKSLHSWLTRVL--YNRRSQFDPLWINAFVAGMQNGE 278 (279)
Q Consensus 227 ~~~~~~~~~~ee~~~l~~~~la~~isr~l--ys~r~~~~P~~vs~ii~G~D~~~ 278 (279)
+-+++ .|++.-..+++++.|..+++..- |++-.+-|||++|++|+|+|+.+
T Consensus 89 rvecq-Shrlt~edpvtveyitRyiA~~kQrYTqs~grRPFGvs~Li~GfD~~g 141 (249)
T KOG0183|consen 89 RVECQ-SHRLTLEDPVTVEYITRYIAGLKQRYTQSNGRRPFGVSTLIGGFDPDG 141 (249)
T ss_pred hHhhh-hhhcccCCCcHHHHHHHHHHHhhhhhhccCCcccccceEEEEeeCCCC
Confidence 99998 78888888999999999999866 76655668999999999999753
No 85
>cd01901 Ntn_hydrolase The Ntn hydrolases (N-terminal nucleophile) are a diverse superfamily of of enzymes that are activated autocatalytically via an N-terminally lcated nucleophilic amino acid. N-terminal nucleophile (NTN-) hydrolase superfamily, which contains a four-layered alpha, beta, beta, alpha core structure. This family of hydrolases includes penicillin acylase, the 20S proteasome alpha and beta subunits, and glutamate synthase. The mechanism of activation of these proteins is conserved, although they differ in their substrate specificities. All known members catalyze the hydrolysis of amide bonds in either proteins or small molecules, and each one of them is synthesized as a preprotein. For each, an autocatalytic endoproteolytic process generates a new N-terminal residue. This mature N-terminal residue is central to catalysis and acts as both a polarizing base and a nucleophile during the reaction. The N-terminal amino group acts as the proton acceptor and activates either t
Probab=99.40 E-value=4.7e-12 Score=103.70 Aligned_cols=110 Identities=22% Similarity=0.154 Sum_probs=99.9
Q ss_pred eeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhcccccccccCCCCCHHHH
Q psy9489 168 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDLHNDGFVLKPKSL 247 (279)
Q Consensus 168 ~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~~ee~~~l~~~~l 247 (279)
++++|+.++++++++.|++.+.+.........|++.++++++++.+|..+|.+.+...++.+.+ .+++.++.++++..+
T Consensus 1 ~t~i~i~~~~gvila~d~~~~~~~~~~~~~~~ki~~~~~~~~~~~sG~~~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 79 (164)
T cd01901 1 STSVAIKGKGGVVLAADKRLSSGLPVAGSPVIKIGKNEDGIAWGLAGLAADAQTLVRRLREALQ-LYRLRYGEPISVVAL 79 (164)
T ss_pred CcEEEEEeCCEEEEEEecccCccCeecCCCcceEEEecCCeEEEEecChHHHHHHHHHHHHHHH-HHHHHHCCCCCHHHH
Confidence 4788999999999999999988777767889999999999999999999999999999999998 778888999999999
Q ss_pred HHHHHHHHhhccCCCCccceEEEEEEEeCCCC
Q psy9489 248 HSWLTRVLYNRRSQFDPLWINAFVAGMQNGEP 279 (279)
Q Consensus 248 a~~isr~lys~r~~~~P~~vs~ii~G~D~~~p 279 (279)
++.+++.++..|. .+|++++++|||+|+++|
T Consensus 80 ~~~~~~~~~~~~~-~~p~~~~~iiag~~~~~~ 110 (164)
T cd01901 80 AKELAKLLQVYTQ-GRPFGVNLIVAGVDEGGG 110 (164)
T ss_pred HHHHHHHHHHhcC-CCCcceEEEEEEEcCCCC
Confidence 9999999987764 689999999999996443
No 86
>KOG0181|consensus
Probab=99.37 E-value=6e-13 Score=111.22 Aligned_cols=120 Identities=16% Similarity=0.258 Sum_probs=105.9
Q ss_pred hcccccccceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhcccccccc
Q psy9489 158 KQKITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDLHN 237 (279)
Q Consensus 158 ~~~~~pi~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~~e 237 (279)
++.+.++..|.+.+|++-.+|+++++++.-. ..+.....++|++.+.+++.++.||..+|.+.+....++..+ .|..-
T Consensus 23 eyAL~Av~~G~~SvGi~A~nGvVlatekk~~-s~L~~~~sv~KV~~i~~~IG~vYSGmgpD~RvlV~~~rkiAe-~Yy~v 100 (233)
T KOG0181|consen 23 EYALTAVVNGQTSVGIKAANGVVLATEKKDV-SPLVDEESVRKVEKITPHIGCVYSGMGPDYRVLVHKSRKIAE-QYYRV 100 (233)
T ss_pred HHHHHHHhCCCCceeeeecCceEEEeccCCC-CccchhhhhhhHhhccCCcceEEecCCCceeehhhHHHHHHH-HHHHH
Confidence 4456677789999999999999999998643 367888899999999999999999999999999999988887 47777
Q ss_pred cCCCCCHHHHHHHHHHHH--hhccCCCCccceEEEEEEEeCCCC
Q psy9489 238 DGFVLKPKSLHSWLTRVL--YNRRSQFDPLWINAFVAGMQNGEP 279 (279)
Q Consensus 238 e~~~l~~~~la~~isr~l--ys~r~~~~P~~vs~ii~G~D~~~p 279 (279)
+++.+++..+...++..+ |++.++.|||+|+++|+|||+++|
T Consensus 101 Y~e~~pt~qlv~~~asvmQEyTqsgGvrPFGvslliaG~~~~~p 144 (233)
T KOG0181|consen 101 YGEPIPTTQLVQEVASVMQEYTQSGGVRPFGVSLLIAGWDEGGP 144 (233)
T ss_pred hcCCCCHHHHHHHHHHHHHHHhhcCCccccceEEEEeecCCCce
Confidence 889999999999999988 788888999999999999998776
No 87
>PRK05456 ATP-dependent protease subunit HslV; Provisional
Probab=99.34 E-value=1.2e-11 Score=104.32 Aligned_cols=100 Identities=20% Similarity=0.186 Sum_probs=82.3
Q ss_pred eeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEe-cccEEEEeccChhhHHHHHHHHHhhcccccccccCCCCCHH
Q psy9489 167 GTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQI-NKFTILGAGNDYADFQYLNDIVKQKILDDDLHNDGFVLKPK 245 (279)
Q Consensus 167 g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i-~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~~ee~~~l~~~ 245 (279)
++|++|++++|||++++|++.++|.++.+++.+||+++ +++++++.+|+.+|+|.+.++++.+.+ .|+. ++ ++
T Consensus 1 gtTivgi~~~dgVvlaaD~r~s~g~~v~~~~~~KI~~i~~d~i~~~~aG~~aD~q~l~~~l~~~~~-~y~~----~~-~~ 74 (172)
T PRK05456 1 GTTILAVRRNGKVAIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLE-EHQG----NL-LR 74 (172)
T ss_pred CcEEEEEEECCEEEEEECCceEeCcEEEcCCCceEEEeCCCCEEEEEeccHHHHHHHHHHHHHHHH-HccC----cc-HH
Confidence 47899999999999999999999999999999999999 999999999999999999999999988 5552 22 57
Q ss_pred HHHHHHHHHHhhccCCCCccceEEEEEEE
Q psy9489 246 SLHSWLTRVLYNRRSQFDPLWINAFVAGM 274 (279)
Q Consensus 246 ~la~~isr~lys~r~~~~P~~vs~ii~G~ 274 (279)
+.++..+... +.+ ..+|+.+++|++++
T Consensus 75 ~~a~l~~~l~-~~~-~~~~l~~~~lv~d~ 101 (172)
T PRK05456 75 AAVELAKDWR-TDR-YLRRLEAMLIVADK 101 (172)
T ss_pred HHHHHHHHHH-hcc-CCCccEEEEEEEcC
Confidence 7776664432 222 12578899999643
No 88
>cd01913 protease_HslV Protease HslV and the ATPase/chaperone HslU are part of an ATP-dependent proteolytic system that is the prokaryotic homolog of the proteasome. HslV is a dimer of hexamers (a dodecamer) that forms a central proteolytic chamber with active sites on the interior walls of the cavity. HslV shares significant sequence and structural similarity with the proteasomal beta-subunit and both are members of the Ntn-family of hydrolases. HslV has a nucleophilic threonine residue at its N-terminus that is exposed after processing of the propeptide and is directly involved in active site catalysis.
Probab=99.34 E-value=9e-12 Score=104.68 Aligned_cols=99 Identities=18% Similarity=0.139 Sum_probs=81.4
Q ss_pred eeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecc-cEEEEeccChhhHHHHHHHHHhhcccccccccCCCCCHHH
Q psy9489 168 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINK-FTILGAGNDYADFQYLNDIVKQKILDDDLHNDGFVLKPKS 246 (279)
Q Consensus 168 ~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~-~~~~~gSG~~aD~~~l~~~l~~~~~~~~~~ee~~~l~~~~ 246 (279)
+|++|++++|||++++|++.++|.++..++.+||+++++ +++++.+|+.+|++.+.++++.+.+ .|+.+.. +.
T Consensus 1 tTivgi~~~dgVvlaaD~r~t~G~~v~~~~~~Ki~~i~d~~i~~~~aG~~aD~~~l~~~~~~~~~-~y~~~~~-----~~ 74 (171)
T cd01913 1 TTILAVRKNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVIAGFAGSTADAFTLFERFEAKLE-QYPGNLL-----RA 74 (171)
T ss_pred CeEEEEEECCEEEEEECCceEeccEEEcCCcceEEEeCCCCEEEEecccHHHHHHHHHHHHHHHH-HhhchHH-----HH
Confidence 578999999999999999999999999999999999998 9999999999999999999999998 6666543 45
Q ss_pred HHHHHHHHHhhccCCCCccc-eEEEEEEEe
Q psy9489 247 LHSWLTRVLYNRRSQFDPLW-INAFVAGMQ 275 (279)
Q Consensus 247 la~~isr~lys~r~~~~P~~-vs~ii~G~D 275 (279)
+++.+...+ +.| .+|+. +.++++++|
T Consensus 75 aa~l~~~l~-~~~--~~~~l~a~~iv~~~~ 101 (171)
T cd01913 75 AVELAKDWR-TDR--YLRRLEAMLIVADKE 101 (171)
T ss_pred HHHHHHHHH-hcc--CcCceEEEEEEeCCC
Confidence 566654443 223 34665 777777654
No 89
>TIGR03692 ATP_dep_HslV ATP-dependent protease HslVU, peptidase subunit. The ATP-dependent protease HslVU, a complex of hexameric HslU active as a protein-unfolding ATPase and dodecameric HslV, the catalytic threonine protease.
Probab=99.32 E-value=1.7e-11 Score=103.02 Aligned_cols=99 Identities=19% Similarity=0.186 Sum_probs=80.9
Q ss_pred eeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEe-cccEEEEeccChhhHHHHHHHHHhhcccccccccCCCCCHHH
Q psy9489 168 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQI-NKFTILGAGNDYADFQYLNDIVKQKILDDDLHNDGFVLKPKS 246 (279)
Q Consensus 168 ~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i-~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~~ee~~~l~~~~ 246 (279)
+|++|++++|||++++|++.++|.++..++.+||+++ +++++++.+|+.+|++.+.++++.+.+ .|+.+ + .+.
T Consensus 1 tTivgi~~~dgVvlaaD~r~s~g~~v~~~~~~Ki~~i~~d~i~~~~aG~~aD~q~l~~~~~~~~~-~y~~~----~-~~~ 74 (171)
T TIGR03692 1 TTILAVRRNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLE-EYQGN----L-TRA 74 (171)
T ss_pred CeEEEEEECCEEEEEECCceEeceEEEcCCCCeEEEeCCCCEEEEecchHHHHHHHHHHHHHHHH-HccCc----h-HHH
Confidence 5789999999999999999999999999999999999 599999999999999999999999998 56653 2 467
Q ss_pred HHHHHHHHHhhccCCCCcc-ceEEEEEEEe
Q psy9489 247 LHSWLTRVLYNRRSQFDPL-WINAFVAGMQ 275 (279)
Q Consensus 247 la~~isr~lys~r~~~~P~-~vs~ii~G~D 275 (279)
+++.+++. ..++ ..|+ .+.++++|+|
T Consensus 75 ~a~l~~~~-~~~~--~~~~l~a~~iv~~~~ 101 (171)
T TIGR03692 75 AVELAKDW-RTDR--YLRRLEAMLIVADKE 101 (171)
T ss_pred HHHHHHHH-hhcc--cccccEEEEEEEcCC
Confidence 77777662 2222 2344 4777777664
No 90
>KOG0173|consensus
Probab=99.26 E-value=1.3e-11 Score=107.05 Aligned_cols=112 Identities=21% Similarity=0.324 Sum_probs=101.1
Q ss_pred ccceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhcccccccccCCCCC
Q psy9489 164 LTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDLHNDGFVLK 243 (279)
Q Consensus 164 i~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~~ee~~~l~ 243 (279)
.++|++++|+.++|+||+++|++.+-|+.+..++++||+.+.++++++|.|..+|...+...+-.+.+ .+++...++..
T Consensus 34 tkTGTtIvgv~~k~gvIlgADtRaT~G~IvaDKnC~KIH~ia~~IyccGAGtAADte~vt~m~ss~l~-Lh~l~t~R~~r 112 (271)
T KOG0173|consen 34 TKTGTTIVGVIFKDGVILGADTRATEGPIVADKNCEKIHFIAPNIYCCGAGTAADTEMVTRMISSNLE-LHRLNTGRKPR 112 (271)
T ss_pred cccCcEEEEEEeCCeEEEeecccccCCCeeecchhHHHhhcccceEEccCCchhhHHHHHHHHHHHHH-HHHhccCCCCc
Confidence 45789999999999999999999999999999999999999999999999999999999998888887 78888888888
Q ss_pred HHHHHHHHHHHHhhccCCCCccceEEEEEEEeCCCC
Q psy9489 244 PKSLHSWLTRVLYNRRSQFDPLWINAFVAGMQNGEP 279 (279)
Q Consensus 244 ~~~la~~isr~lys~r~~~~P~~vs~ii~G~D~~~p 279 (279)
+-+....+++.|+.+.+ -.+..+||||+|.-||
T Consensus 113 Vv~A~~mlkQ~LFrYqG---~IgA~LiiGGvD~TGp 145 (271)
T KOG0173|consen 113 VVTALRMLKQHLFRYQG---HIGAALILGGVDPTGP 145 (271)
T ss_pred eeeHHHHHHHHHHHhcC---cccceeEEccccCCCC
Confidence 88888899988876653 4889999999998776
No 91
>KOG0182|consensus
Probab=99.21 E-value=2.9e-11 Score=102.39 Aligned_cols=146 Identities=14% Similarity=0.128 Sum_probs=114.5
Q ss_pred CCcCcCccC-CccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhc--------
Q psy9489 89 GSFSTPLTT-GTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQ-------- 159 (279)
Q Consensus 89 ~~~~~~~~~-G~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~-------- 159 (279)
..+++++++ |=|+||+++||++|+++.++.. .+++.+.++.-+|+|+.+|+|+++|..+|.+..++..+.
T Consensus 26 EYafkAin~~gltsVavrgkDcavvvsqKkvp-DKLld~~tvt~~f~itk~ig~v~tG~~aDar~~v~rar~eAa~~~yk 104 (246)
T KOG0182|consen 26 EYAFKAINQAGLTSVAVRGKDCAVVVTQKKVP-DKLLDSSTVTHLFRITKKIGCVITGMIADARSQVQRARYEAAEFRYK 104 (246)
T ss_pred ehHHHHhhcCCCceEEEcCCceEEEEecccCc-ccccccccceeEEEeeccceEEEecCCcchHHHHHHHHHHHHhhhhh
Confidence 356788885 8999999999999999999954 899999999999999999999999999999999988874
Q ss_pred -------------------------ccccccceeeEEEEEeC-CcEEEEEcCCCccCceeeecCCCceEEecccEEEEec
Q psy9489 160 -------------------------KITPLTTGTSVLGLVFN-GGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAG 213 (279)
Q Consensus 160 -------------------------~~~pi~~g~tvlgi~~~-~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gS 213 (279)
.++|.....+++|++.+ ++.++-+|+.|-| ..-+..++|-
T Consensus 105 ~Gyemp~DiL~k~~Ad~~QvytQ~a~mRplg~~~~~i~~D~E~gP~vYk~DpAGyy--------------~g~kAtaaG~ 170 (246)
T KOG0182|consen 105 YGYEMPCDILAKRMADKSQVYTQNAAMRPLGVAATLIGVDEERGPSVYKTDPAGYY--------------YGFKATAAGV 170 (246)
T ss_pred cCCCCCHHHHHHHHhhHHHHHhhhhhhcccceeEEEEEeccccCcceEeecCcccc--------------ccceeeeccc
Confidence 12344455677888764 6889999999865 3444555555
Q ss_pred cChhhHHHHHHHHHhhcccc--cccccCCCCCHHHHHHHHHH
Q psy9489 214 NDYADFQYLNDIVKQKILDD--DLHNDGFVLKPKSLHSWLTR 253 (279)
Q Consensus 214 G~~aD~~~l~~~l~~~~~~~--~~~ee~~~l~~~~la~~isr 253 (279)
-. +.+..+|++.++.+ .+.++..++.+.+|...+.-
T Consensus 171 Kq----~e~tsfLEKk~Kk~~~~t~~e~ve~ai~al~~sl~~ 208 (246)
T KOG0182|consen 171 KQ----QEATSFLEKKYKKDIDLTFEETVETAISALQSSLGI 208 (246)
T ss_pred ch----hhHHHHHHHhhccCccchHHHHHHHHHHHHHHHHhc
Confidence 56 88999999999876 33555555555555555543
No 92
>KOG0182|consensus
Probab=99.14 E-value=2.4e-10 Score=96.94 Aligned_cols=121 Identities=12% Similarity=0.134 Sum_probs=107.2
Q ss_pred hhcccccccc-eeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhcccccc
Q psy9489 157 VKQKITPLTT-GTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDL 235 (279)
Q Consensus 157 l~~~~~pi~~-g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~ 235 (279)
+++..+++.. |-+.++++.+|..++.+.+..+ ++++.+..+..+|++..++.++.+|..+|+.+.....+.+.. .++
T Consensus 25 VEYafkAin~~gltsVavrgkDcavvvsqKkvp-DKLld~~tvt~~f~itk~ig~v~tG~~aDar~~v~rar~eAa-~~~ 102 (246)
T KOG0182|consen 25 VEYAFKAINQAGLTSVAVRGKDCAVVVTQKKVP-DKLLDSSTVTHLFRITKKIGCVITGMIADARSQVQRARYEAA-EFR 102 (246)
T ss_pred eehHHHHhhcCCCceEEEcCCceEEEEecccCc-ccccccccceeEEEeeccceEEEecCCcchHHHHHHHHHHHH-hhh
Confidence 3445567765 6678899999999999888864 588999999999999999999999999999999999999988 788
Q ss_pred cccCCCCCHHHHHHHHHHHH--hhccCCCCccceEEEEEEEeCC-CC
Q psy9489 236 HNDGFVLKPKSLHSWLTRVL--YNRRSQFDPLWINAFVAGMQNG-EP 279 (279)
Q Consensus 236 ~ee~~~l~~~~la~~isr~l--ys~r~~~~P~~vs~ii~G~D~~-~p 279 (279)
+.++.+++++.|+..+.... |+++..+||++|.+++.|+|++ ||
T Consensus 103 yk~Gyemp~DiL~k~~Ad~~QvytQ~a~mRplg~~~~~i~~D~E~gP 149 (246)
T KOG0182|consen 103 YKYGYEMPCDILAKRMADKSQVYTQNAAMRPLGVAATLIGVDEERGP 149 (246)
T ss_pred hhcCCCCCHHHHHHHHhhHHHHHhhhhhhcccceeEEEEEeccccCc
Confidence 99999999999999999855 8999999999999999999975 56
No 93
>KOG0863|consensus
Probab=99.09 E-value=2.9e-10 Score=97.49 Aligned_cols=120 Identities=19% Similarity=0.176 Sum_probs=96.0
Q ss_pred hhhcccccccceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhcccccc
Q psy9489 156 IVKQKITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDL 235 (279)
Q Consensus 156 ~l~~~~~pi~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~ 235 (279)
.+++.++++..|+..+|++.+.-.++.+-++... -.....+|||++++|+.+..+|..+|...+.++|+.++. .++
T Consensus 21 QvEya~EavkqGsatVGLks~thaVLvAl~r~~s---eLss~QkKi~~iD~h~g~siAGLt~Darvl~~Ylr~ec~-~~~ 96 (264)
T KOG0863|consen 21 QVEYAMEAVKQGSATVGLKSRTHAVLVALKRAQS---ELSSHQKKIFKIDDHIGISIAGLTADARVLSRYLRQECL-NSR 96 (264)
T ss_pred HHHHHHHHHhcccceEeecccceEEEeeeccchh---HHHHhhheeEecccccceEEeccCcchHHHHHHHHHHHh-hhh
Confidence 4556778888999999999887555544333221 112346899999999999999999999999999999998 778
Q ss_pred cccCCCCCHHHHHHHHHHHHh--hccCCCCccceEEEEEEEeCCCC
Q psy9489 236 HNDGFVLKPKSLHSWLTRVLY--NRRSQFDPLWINAFVAGMQNGEP 279 (279)
Q Consensus 236 ~ee~~~l~~~~la~~isr~ly--s~r~~~~P~~vs~ii~G~D~~~p 279 (279)
.....++++.-+.+-+.+.+. ++|-+-|||+|.++++|||+.||
T Consensus 97 ~~~~r~~pv~rl~~~l~~k~q~~Tq~ygrRpYGVGllv~gYDe~G~ 142 (264)
T KOG0863|consen 97 FIYGRPLPVLRLVEDLGDKAQENTQRYGRRPYGVGLLVAGYDESGP 142 (264)
T ss_pred hccCCcccHHHHHHHHHHHHhhhhhhhCCccccceEEEEeecCCCc
Confidence 888899999999998888773 34434469999999999998876
No 94
>KOG0863|consensus
Probab=99.04 E-value=4.5e-10 Score=96.39 Aligned_cols=160 Identities=13% Similarity=0.108 Sum_probs=109.0
Q ss_pred CcCcCccCCccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhcc--------c
Q psy9489 90 SFSTPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQK--------I 161 (279)
Q Consensus 90 ~~~~~~~~G~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~~--------~ 161 (279)
.++++++.|+++||+|.++..||+|=+|.. +-+ +...+||++|++|++++.||+.+|.+.+.+.+++. .
T Consensus 24 ya~EavkqGsatVGLks~thaVLvAl~r~~-seL--ss~QkKi~~iD~h~g~siAGLt~Darvl~~Ylr~ec~~~~~~~~ 100 (264)
T KOG0863|consen 24 YAMEAVKQGSATVGLKSRTHAVLVALKRAQ-SEL--SSHQKKIFKIDDHIGISIAGLTADARVLSRYLRQECLNSRFIYG 100 (264)
T ss_pred HHHHHHhcccceEeecccceEEEeeeccch-hHH--HHhhheeEecccccceEEeccCcchHHHHHHHHHHHhhhhhccC
Confidence 457799999999999999999999999954 322 34568999999999999999999999999999961 0
Q ss_pred -------------------------ccccceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccCh
Q psy9489 162 -------------------------TPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDY 216 (279)
Q Consensus 162 -------------------------~pi~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~ 216 (279)
+|+..|--+.|.+..++.|+-..|.|.+ .+-+-...|+=+
T Consensus 101 r~~pv~rl~~~l~~k~q~~Tq~ygrRpYGVGllv~gYDe~G~hl~e~~Psg~v--------------~e~~g~sIGsRS- 165 (264)
T KOG0863|consen 101 RPLPVLRLVEDLGDKAQENTQRYGRRPYGVGLLVAGYDESGPHLYEFCPSGNV--------------FECKGMSIGSRS- 165 (264)
T ss_pred CcccHHHHHHHHHHHHhhhhhhhCCccccceEEEEeecCCCceeEEEcCCccE--------------EEEeeeecccch-
Confidence 1333333344565567778877887765 444556667777
Q ss_pred hhHHHHHHHHHhhcccccccccCCCCCHHHHHH-HHHHHHhhccC--CCCccceEEEEEEEeC
Q psy9489 217 ADFQYLNDIVKQKILDDDLHNDGFVLKPKSLHS-WLTRVLYNRRS--QFDPLWINAFVAGMQN 276 (279)
Q Consensus 217 aD~~~l~~~l~~~~~~~~~~ee~~~l~~~~la~-~isr~lys~r~--~~~P~~vs~ii~G~D~ 276 (279)
|.+..+|+.++.+ +. +.+++.|.. .+.-+--+... .+....|++-|.|.|.
T Consensus 166 ---QsARTyLEr~~e~-f~-----~~~~eELI~~gi~Alr~tlp~de~lt~~nvsI~Ivgkd~ 219 (264)
T KOG0863|consen 166 ---QSARTYLERNLEE-FE-----DSSPEELIKHGIMALRETLPEDEDLTGENVSIAIVGKDE 219 (264)
T ss_pred ---hhHHHHHHHHHHH-Hh-----cCCHHHHHHHHHHHHHhhcCcccccccceeEEEEEeCCC
Confidence 7788888877662 22 334443332 22212122221 2345668888888764
No 95
>COG5405 HslV ATP-dependent protease HslVU (ClpYQ), peptidase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=1e-06 Score=72.24 Aligned_cols=126 Identities=15% Similarity=0.177 Sum_probs=89.7
Q ss_pred CCccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecC-ceEeeecCcccccccchhhhhccccccccee---eE--
Q psy9489 97 TGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINK-FTILGAGNDYADFQYLNDIVKQKITPLTTGT---SV-- 170 (279)
Q Consensus 97 ~G~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~-~~~~~~sG~~aD~~~l~~~l~~~~~pi~~g~---tv-- 170 (279)
++||+++++-++=|+||+|...|.|..+...+..|+-+|.+ +++.|.+|..||+..|.+.++.+.+..+ +. ..
T Consensus 3 h~TTiv~vr~~gkv~iagDGQVtlG~tvmK~narKvRkl~~gkvlaGFAGstADaftLfe~fe~kle~~~-g~L~raave 81 (178)
T COG5405 3 HMTTIVAVRKNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLEQYQ-GDLFRAAVE 81 (178)
T ss_pred eeEEEEEEeeCCeEEEecCceEeecceeeeccHHHHHHHcCCcEEEEecccchhHHHHHHHHHHHHHHcc-CcHHHHHHH
Confidence 68999999999999999999999999999999998888875 8999999999999999988886443222 10 00
Q ss_pred EEEE--e------CCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhcc
Q psy9489 171 LGLV--F------NGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKIL 231 (279)
Q Consensus 171 lgi~--~------~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~ 231 (279)
++=+ . -...++.+|+...+ +.+.+- -++.-++.+.+.|||. .++..-.+..++
T Consensus 82 laKdwr~Dk~lr~LEAmllVad~~~il---~isG~g-dV~epe~~~~aIGSGg----nyAl~AarAl~~ 142 (178)
T COG5405 82 LAKDWRTDKYLRKLEAMLLVADKTHIL---IITGNG-DVIEPEDDIIAIGSGG----NYALSAARALME 142 (178)
T ss_pred HHHhhhhhhHHHHHhhheeEeCCCcEE---EEecCc-ceecCCCCeEEEcCCc----hHHHHHHHHHHh
Confidence 0000 0 02344455665432 222222 2233355689999999 888888887775
No 96
>COG5405 HslV ATP-dependent protease HslVU (ClpYQ), peptidase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.32 E-value=0.0057 Score=50.48 Aligned_cols=66 Identities=20% Similarity=0.244 Sum_probs=57.6
Q ss_pred ceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEe-cccEEEEeccChhhHHHHHHHHHhhcc
Q psy9489 166 TGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQI-NKFTILGAGNDYADFQYLNDIVKQKIL 231 (279)
Q Consensus 166 ~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i-~~~~~~~gSG~~aD~~~l~~~l~~~~~ 231 (279)
.++|+++++-++-++++.|...+.|..+...+..|+.++ ..++.++..|+.+|+..+.+.++..++
T Consensus 3 h~TTiv~vr~~gkv~iagDGQVtlG~tvmK~narKvRkl~~gkvlaGFAGstADaftLfe~fe~kle 69 (178)
T COG5405 3 HMTTIVAVRKNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLE 69 (178)
T ss_pred eeEEEEEEeeCCeEEEecCceEeecceeeeccHHHHHHHcCCcEEEEecccchhHHHHHHHHHHHHH
Confidence 468899999999999999999999999888877666554 458999999999999999999998887
No 97
>COG3484 Predicted proteasome-type protease [Posttranslational modification, protein turnover, chaperones]
Probab=79.04 E-value=4.9 Score=34.75 Aligned_cols=62 Identities=16% Similarity=0.307 Sum_probs=44.3
Q ss_pred eEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEec---c-cEEEEeccChhhHHHHHHHHHhhcc
Q psy9489 169 SVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQIN---K-FTILGAGNDYADFQYLNDIVKQKIL 231 (279)
Q Consensus 169 tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~---~-~~~~~gSG~~aD~~~l~~~l~~~~~ 231 (279)
-++|+..+.|.++++|++...| .=.....+|+|..+ + -+++.-+|..|-.|.+...|++..+
T Consensus 3 YCv~l~l~~GlVf~sDsRTNAG-vD~istfkKl~~~~~pGdRvlvl~taGNLA~tQaV~~ll~e~~~ 68 (255)
T COG3484 3 YCVGLILDFGLVFGSDSRTNAG-VDYISTFKKLFVFELPGDRVLVLCTAGNLAITQAVLHLLDERIQ 68 (255)
T ss_pred eEEEEEeccceEEecccccccC-chHHHHHHHHhhccCCCceEEEEEecCccHHHHHHHHHHHHHhh
Confidence 3678888999999999986543 11123345555442 2 2667778999999999999998775
No 98
>KOG2848|consensus
Probab=74.29 E-value=4 Score=36.58 Aligned_cols=57 Identities=16% Similarity=0.261 Sum_probs=41.2
Q ss_pred CCHHHHHHHHHHHHHHHhccccccCCCCCCCCCeeecCCCCCCCccccCCCcCcCccCCccEEEEEeCCeEE
Q psy9489 40 MSKEEAIALIKTCMDLLYVRDARSGAKNGPSLGKYHDFPNVLPHYFRRSGSFSTPLTTGTSVLGLVFNGGVI 111 (279)
Q Consensus 40 ~~~~ea~~l~~~c~~~~~~rd~~~~~~~g~~~~~f~~~~~~~~~~~~~~~~~~~~~~~G~t~lgi~~~~gVv 111 (279)
+.+|+|.+.+.+|++++.+++.+ ...||-+.- .....+-|.++|.-.+|++.+==+|
T Consensus 143 ~r~~~Ai~~l~~~~~~mkk~~~k-----------vWvFPEGTR----n~~g~llPFKKGAF~lAvqaqVPIV 199 (276)
T KOG2848|consen 143 SRREKAIDTLDKCAERMKKENRK-----------VWVFPEGTR----NKEGRLLPFKKGAFHLAVQAQVPIV 199 (276)
T ss_pred CCHHHHHHHHHHHHHHHHhCCee-----------EEEccCCcc----CCCCcccccccceeeeehhcCCCEE
Confidence 67899999999999999987764 456884431 1223456888888888887765444
No 99
>PF04485 NblA: Phycobilisome degradation protein nblA ; InterPro: IPR007574 In the cyanobacterium Synechococcus species PCC 7942 (P35087 from SWISSPROT), nblA triggers degradation of light-harvesting phycobiliproteins in response to deprivation nutrients including nitrogen, phosphorus and sulphur. The mechanism of nblA function is not known, but it has been hypothesised that nblA may act by disrupting phycobilisome structure, activating a protease or tagging phycobiliproteins for proteolysis. Members of this family have also been identified in the chloroplasts of some red algae.; PDB: 3CS5_D 1OJH_L 2QDO_B 2Q8V_A.
Probab=72.99 E-value=5.5 Score=26.91 Aligned_cols=33 Identities=12% Similarity=0.364 Sum_probs=24.5
Q ss_pred hhhhhhhhhhcCCCCCCHHHHHHHHHHHHHHHhccc
Q psy9489 25 IAVPLLRQETEKNPQMSKEEAIALIKTCMDLLYVRD 60 (279)
Q Consensus 25 ~~~~~l~~~~~~~~~~~~~ea~~l~~~c~~~~~~rd 60 (279)
|-+-.+++... +||+|||.++|.+-++-+--||
T Consensus 10 F~L~~~~~qv~---~ls~Eqaq~~Lve~~rqmmike 42 (53)
T PF04485_consen 10 FKLRSFKDQVQ---KLSREQAQELLVELYRQMMIKE 42 (53)
T ss_dssp HHHHHHHHHHC---TS-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH---HhCHHHHHHHHHHHHHHHHHHH
Confidence 44556677764 7999999999999888776665
No 100
>KOG1930|consensus
Probab=71.49 E-value=2.3 Score=40.52 Aligned_cols=19 Identities=37% Similarity=0.574 Sum_probs=15.3
Q ss_pred hhhcCCCCCCHHHHHHHHHH
Q psy9489 32 QETEKNPQMSKEEAIALIKT 51 (279)
Q Consensus 32 ~~~~~~~~~~~~ea~~l~~~ 51 (279)
+||= +|+||+|||++||++
T Consensus 212 KyWY-KP~isREQAIalLrd 230 (483)
T KOG1930|consen 212 KYWY-KPNISREQAIALLRD 230 (483)
T ss_pred cccc-CCCCCHHHHHHHhhc
Confidence 4553 389999999999975
No 101
>COG3484 Predicted proteasome-type protease [Posttranslational modification, protein turnover, chaperones]
Probab=70.27 E-value=4.6 Score=34.90 Aligned_cols=60 Identities=17% Similarity=0.315 Sum_probs=44.6
Q ss_pred ccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEec----CceEeeecCcccccccchhhhhc
Q psy9489 99 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQIN----KFTILGAGNDYADFQYLNDIVKQ 159 (279)
Q Consensus 99 ~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~----~~~~~~~sG~~aD~~~l~~~l~~ 159 (279)
|=+||++-..|.|.++|+|...| +-.-...+|+|.-. .-++++.+|-.|=.|.+...+.+
T Consensus 2 TYCv~l~l~~GlVf~sDsRTNAG-vD~istfkKl~~~~~pGdRvlvl~taGNLA~tQaV~~ll~e 65 (255)
T COG3484 2 TYCVGLILDFGLVFGSDSRTNAG-VDYISTFKKLFVFELPGDRVLVLCTAGNLAITQAVLHLLDE 65 (255)
T ss_pred ceEEEEEeccceEEecccccccC-chHHHHHHHHhhccCCCceEEEEEecCccHHHHHHHHHHHH
Confidence 34799999999999999996555 21223456666443 34678999999999999888875
No 102
>PHA02823 chemokine binding protein; Provisional
Probab=65.30 E-value=3.7 Score=35.54 Aligned_cols=31 Identities=29% Similarity=0.563 Sum_probs=21.9
Q ss_pred hhhhhhcCC-CCCCHHHHHHHHHHHHHHHhcc
Q psy9489 29 LLRQETEKN-PQMSKEEAIALIKTCMDLLYVR 59 (279)
Q Consensus 29 ~l~~~~~~~-~~~~~~ea~~l~~~c~~~~~~r 59 (279)
=++-+..++ |-||+|||.+|+++|.--+.-|
T Consensus 131 S~~Pw~~~~~~sitr~ealal~~~CevsIdiK 162 (255)
T PHA02823 131 SVSPGQGKDSPAITREEALAMIKDCEVSIDIK 162 (255)
T ss_pred ccCCCCCCCCccccHHHHHHHHhhceeeEEEE
Confidence 334444333 4599999999999998766554
No 103
>PF09894 DUF2121: Uncharacterized protein conserved in archaea (DUF2121); InterPro: IPR016754 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. They do show distant similarity to NTPases and to nucleic acid binding enzymes.
Probab=65.11 E-value=8.3 Score=33.03 Aligned_cols=34 Identities=21% Similarity=0.271 Sum_probs=28.6
Q ss_pred hhhhhhhhhhhcCCCCCCHHHHHHHHHHHHHHHhcc
Q psy9489 24 HIAVPLLRQETEKNPQMSKEEAIALIKTCMDLLYVR 59 (279)
Q Consensus 24 ~~~~~~l~~~~~~~~~~~~~ea~~l~~~c~~~~~~r 59 (279)
-+|-..|.++|. |.|+.+++.+++++||+++-..
T Consensus 131 ~ia~~~lkk~~~--~k~~l~~i~~i~~~i~~~~a~~ 164 (194)
T PF09894_consen 131 EIANKELKKYWK--PKMSLKDIENIFEKIMEEVASK 164 (194)
T ss_pred HHHHHHHHHhcC--CCCCHHHHHHHHHHHHHHHhhc
Confidence 356678899986 7899999999999999998543
No 104
>PF09999 DUF2240: Uncharacterized protein conserved in archaea (DUF2240); InterPro: IPR018716 This family of various hypothetical archaeal proteins has no known function.
Probab=59.75 E-value=6.3 Score=32.29 Aligned_cols=23 Identities=22% Similarity=0.260 Sum_probs=19.4
Q ss_pred hhhhhcCCCCCCHHHHHHHHHHHHHHHh
Q psy9489 30 LRQETEKNPQMSKEEAIALIKTCMDLLY 57 (279)
Q Consensus 30 l~~~~~~~~~~~~~ea~~l~~~c~~~~~ 57 (279)
||+.| ||.+||.+|++.+.++=.
T Consensus 29 ~D~~W-----mspdqAk~li~~A~~eGL 51 (144)
T PF09999_consen 29 FDRKW-----MSPDQAKRLIDEAIEEGL 51 (144)
T ss_pred eecCC-----CCHHHHHHHHHHHHHCCC
Confidence 46666 999999999999998743
No 105
>PF02022 Integrase_Zn: Integrase Zinc binding domain The structure of the N-terminal zinc binding domain.; InterPro: IPR003308 Retroviral integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains: an N-terminal zinc binding domain, a central catalytic core and a C-terminal DNA-binding domain [, ]. Often found as part of the POL polyprotein.; GO: 0008270 zinc ion binding; PDB: 1E0E_A 3F9K_F 1E27_C 1K6Y_B 1WJD_A 1WJB_A 1WJF_A 1WJE_B 3HPG_B 3HPH_C ....
Probab=51.26 E-value=12 Score=23.76 Aligned_cols=20 Identities=20% Similarity=0.433 Sum_probs=14.5
Q ss_pred hhhhhhcCCCCCCHHHHHHHHHHH
Q psy9489 29 LLRQETEKNPQMSKEEAIALIKTC 52 (279)
Q Consensus 29 ~l~~~~~~~~~~~~~ea~~l~~~c 52 (279)
-|+..+ ++++.+|+++++.|
T Consensus 14 ~L~~~f----~ip~~vAk~IV~~C 33 (40)
T PF02022_consen 14 ALRHKF----GIPRLVAKQIVNQC 33 (40)
T ss_dssp HHHHHH----T--HHHHHHHHHHS
T ss_pred HHHHHH----ccCHHHHHHHHHHC
Confidence 456555 59999999999998
No 106
>PF10655 DUF2482: Hypothetical protein of unknown function (DUF2482); InterPro: IPR018917 This entry is represented by Bacteriophage 80, Orf10. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. All the members of this very small, very short family are derived from bacteriophages, of the SA bacteriophages 11, Mu50B, system, and from the Staphylococcal_phi-Mu50B-like_prophages subsystem. All members are hypothetical proteins.
Probab=50.09 E-value=13 Score=28.00 Aligned_cols=20 Identities=30% Similarity=0.365 Sum_probs=18.7
Q ss_pred CCCCHHHHHHHHHHHHHHHh
Q psy9489 38 PQMSKEEAIALIKTCMDLLY 57 (279)
Q Consensus 38 ~~~~~~ea~~l~~~c~~~~~ 57 (279)
.|||+||-++||-+=-+|||
T Consensus 6 KdMTqeelr~llseK~~ELy 25 (100)
T PF10655_consen 6 KDMTQEELRDLLSEKNGELY 25 (100)
T ss_pred hhhhHHHHHHHHHHhhHHHH
Confidence 48999999999999999998
No 107
>PRK10465 hydrogenase 2-specific chaperone; Provisional
Probab=49.49 E-value=20 Score=29.79 Aligned_cols=42 Identities=19% Similarity=0.397 Sum_probs=33.7
Q ss_pred cccchhhhhhhhhhhcCCCCCCHHHHHHHHHHHHHHHhccccccCCC
Q psy9489 20 GFGTHIAVPLLRQETEKNPQMSKEEAIALIKTCMDLLYVRDARSGAK 66 (279)
Q Consensus 20 g~g~~~~~~~l~~~~~~~~~~~~~ea~~l~~~c~~~~~~rd~~~~~~ 66 (279)
|.|.|++=||+---- +-.+.|||+++-+.|++.|. +....|.
T Consensus 101 ~~G~y~sCSLfSPm~---~f~~~~~A~~~A~a~l~~ll--s~pv~~~ 142 (159)
T PRK10465 101 GVSQYLSCSLMSPLD---PSLSAEQGVRLADDCARMLL--SLPVTNP 142 (159)
T ss_pred CCcceeEeeccCCcc---cccCHHHHHHHHHHHHHHHh--cCcccCC
Confidence 789999999887664 35899999999999999987 4444443
No 108
>PF13368 Toprim_C_rpt: Topoisomerase C-terminal repeat
Probab=47.60 E-value=15 Score=25.27 Aligned_cols=33 Identities=18% Similarity=0.412 Sum_probs=21.6
Q ss_pred cCCeeeccccchhhhhhhhhhhcCCCCCCHHHHHHHHH
Q psy9489 13 EDKILSFGFGTHIAVPLLRQETEKNPQMSKEEAIALIK 50 (279)
Q Consensus 13 ~~~~~~~g~g~~~~~~~l~~~~~~~~~~~~~ea~~l~~ 50 (279)
.-||+.+| +.+..+| +. .. ..++|.|||++||.
T Consensus 14 fGPYv~~g-~~~~slp--k~-~~-~~~itle~a~~ll~ 46 (61)
T PF13368_consen 14 FGPYVKHG-KKNASLP--KD-ED-PEEITLEEAVELLA 46 (61)
T ss_pred CCceEEEC-CcccccC--CC-CC-cccCCHHHHHHHHh
Confidence 46777777 5555555 22 21 24699999999886
No 109
>PF02885 Glycos_trans_3N: Glycosyl transferase family, helical bundle domain Prosite entry for Thymidine and pyrimidine-nucleoside phosphorylases; InterPro: IPR017459 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. The glycosyl transferase family includes anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase (2.4.2.2 from EC) catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism. This N-terminal domain is found in various family 3 glycosyl transferases, including anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism.; PDB: 2DSJ_B 2ELC_B 2BPQ_A 1ZVW_B 3QR9_B 1V8G_B 2WK5_C 2J0F_C 2WK6_B 1UOU_A ....
Probab=46.07 E-value=20 Score=24.90 Aligned_cols=27 Identities=26% Similarity=0.405 Sum_probs=18.4
Q ss_pred hhhhhhhhcCCCCCCHHHHHHHHHHHHH
Q psy9489 27 VPLLRQETEKNPQMSKEEAIALIKTCMD 54 (279)
Q Consensus 27 ~~~l~~~~~~~~~~~~~ea~~l~~~c~~ 54 (279)
.++|++..++ .++|.||+.++++..+.
T Consensus 3 ~~~l~~l~~g-~~Ls~~e~~~~~~~i~~ 29 (66)
T PF02885_consen 3 KEILKKLRDG-EDLSREEAKAAFDAILD 29 (66)
T ss_dssp HHHHHHHHTT-----HHHHHHHHHHHHT
T ss_pred HHHHHHHHcC-CCCCHHHHHHHHHHHHc
Confidence 4678888864 78999999999987764
No 110
>PF09894 DUF2121: Uncharacterized protein conserved in archaea (DUF2121); InterPro: IPR016754 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. They do show distant similarity to NTPases and to nucleic acid binding enzymes.
Probab=45.90 E-value=14 Score=31.60 Aligned_cols=19 Identities=16% Similarity=0.340 Sum_probs=17.4
Q ss_pred cEEEEEeCCeEEEEEeCCC
Q psy9489 100 SVLGLVFNGGVILAADSAG 118 (279)
Q Consensus 100 t~lgi~~~~gVvlaaD~r~ 118 (279)
-+||..+++|.|||.|+|.
T Consensus 3 LII~y~GknGaViaGDkR~ 21 (194)
T PF09894_consen 3 LIIAYYGKNGAVIAGDKRN 21 (194)
T ss_pred EEEEEecCCCcEEecccee
Confidence 5899999999999999993
No 111
>PF02563 Poly_export: Polysaccharide biosynthesis/export protein; InterPro: IPR003715 The extracellular polysaccharide colanic acid (CA) is produced by species of the family Enterobacteriaceae. In Escherichia coli (strain K12) the CA cluster comprises 19 genes. The wzx gene encodes a protein with multiple transmembrane segments that may function in export of the CA repeat unit from the cytoplasm into the periplasm in a process analogous to O-unit export. The CA gene clusters may be involved in the export of polysaccharide from the cell [].; GO: 0015159 polysaccharide transmembrane transporter activity, 0015774 polysaccharide transport, 0016020 membrane; PDB: 2W8I_E 2W8H_E 2J58_D.
Probab=44.64 E-value=11 Score=27.48 Aligned_cols=36 Identities=31% Similarity=0.403 Sum_probs=26.0
Q ss_pred cchhhhhhhhhhhcCCCCCCHHHHHHHHHHHHHHHhccc
Q psy9489 22 GTHIAVPLLRQETEKNPQMSKEEAIALIKTCMDLLYVRD 60 (279)
Q Consensus 22 g~~~~~~~l~~~~~~~~~~~~~ea~~l~~~c~~~~~~rd 60 (279)
-+.+.+|++-+-.= .+||.+||.+.|++.++. ++|+
T Consensus 38 dG~I~lP~iG~v~v--~G~T~~e~~~~I~~~l~~-~~~~ 73 (82)
T PF02563_consen 38 DGTISLPLIGPVKV--AGLTLEEAEEEIKQRLQK-YYRD 73 (82)
T ss_dssp TSEEEETTTEEEE---TT--HHHHHHHHHHHHTT-TSSS
T ss_pred CCcEeecccceEEE--CCCCHHHHHHHHHHHHHH-HhcC
Confidence 35677888877643 689999999999999988 5554
No 112
>PF10397 ADSL_C: Adenylosuccinate lyase C-terminus; InterPro: IPR019468 Adenylosuccinate lyase catalyses two steps in the synthesis of purine nucleotides: the conversion of succinylaminoimidazole-carboxamide ribotide into aminoimidazole-carboxamide ribotide (the fifth step of de novo IMP biosynthesis); the formation of adenosine monophosphate (AMP) from adenylosuccinate (the final step in the synthesis of AMP from IMP) []. This entry represents the C-terminal, seven alpha-helical, domain of adenylosuccinate lyase [].; PDB: 1YIS_A 1C3U_B 1C3C_A 3C8T_A 2PFM_B 1RE5_D 1Q5N_A 2VD6_D 2J91_B 2X75_A.
Probab=43.79 E-value=27 Score=25.27 Aligned_cols=35 Identities=14% Similarity=0.186 Sum_probs=24.7
Q ss_pred cchhhhhhhhhhhcCCCCCCHHHHHHHHHHHHHHHhc
Q psy9489 22 GTHIAVPLLRQETEKNPQMSKEEAIALIKTCMDLLYV 58 (279)
Q Consensus 22 g~~~~~~~l~~~~~~~~~~~~~ea~~l~~~c~~~~~~ 58 (279)
|-.++-++|-.--+ .+|+++||+++++++...-..
T Consensus 2 Gli~SE~v~~~L~~--~G~gR~~Ah~lv~~~a~~a~~ 36 (81)
T PF10397_consen 2 GLIFSERVMLALAE--KGLGRQEAHELVQEAAMEAWE 36 (81)
T ss_dssp TGGGHHHHHHHHHH--TTH-HHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHH--HccCHHHHHHHHHHHHHHHHH
Confidence 34556667776665 469999999999997766553
No 113
>PF05924 SAMP: SAMP Motif; InterPro: IPR009224 This short region is found repeated in the mid region of the adenomatous polyposis proteins (APCs). This motif binds axin [].; GO: 0008013 beta-catenin binding, 0016055 Wnt receptor signaling pathway; PDB: 1EMU_B 2RQU_B.
Probab=43.16 E-value=18 Score=19.31 Aligned_cols=8 Identities=13% Similarity=0.879 Sum_probs=7.0
Q ss_pred HHHHHHHH
Q psy9489 47 ALIKTCMD 54 (279)
Q Consensus 47 ~l~~~c~~ 54 (279)
+||++|+.
T Consensus 4 eiL~~CI~ 11 (20)
T PF05924_consen 4 EILQECIG 11 (20)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 89999985
No 114
>PF04839 PSRP-3_Ycf65: Plastid and cyanobacterial ribosomal protein (PSRP-3 / Ycf65); InterPro: IPR006924 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This small acidic protein is found in 30S ribosomal subunit of cyanobacteria and plant plastids. In plants it has been named plastid-specific ribosomal protein 3 (PSRP-3), and in cyanobacteria it is named Ycf65. Plastid-specific ribosomal proteins may mediate the effects of nuclear factors on plastid translation. The acidic PSRPs are thought to contribute to protein-protein interactions in the 30S subunit, and are not thought to bind RNA [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome, 0009536 plastid; PDB: 2KT9_A.
Probab=42.27 E-value=33 Score=22.70 Aligned_cols=30 Identities=27% Similarity=0.500 Sum_probs=24.0
Q ss_pred hhhhhhcCCCCCCHHHHHHHHHHHHHHHhc
Q psy9489 29 LLRQETEKNPQMSKEEAIALIKTCMDLLYV 58 (279)
Q Consensus 29 ~l~~~~~~~~~~~~~ea~~l~~~c~~~~~~ 58 (279)
.|+...+.+|=|++.|.+.||.++.+++-|
T Consensus 15 ~lk~eLe~K~WIs~~e~i~lLN~~TeiIN~ 44 (49)
T PF04839_consen 15 QLKNELESKPWISEKERIELLNQATEIINY 44 (49)
T ss_dssp HHHHHHHHSTTS-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 466677666789999999999999998865
No 115
>KOG3466|consensus
Probab=40.85 E-value=45 Score=27.07 Aligned_cols=46 Identities=20% Similarity=0.253 Sum_probs=34.9
Q ss_pred hhhhhhcCCCCCCHHHHHHHHHHHHHHHhccccccCCCCCCCCCeeecCCCCC
Q psy9489 29 LLRQETEKNPQMSKEEAIALIKTCMDLLYVRDARSGAKNGPSLGKYHDFPNVL 81 (279)
Q Consensus 29 ~l~~~~~~~~~~~~~ea~~l~~~c~~~~~~rd~~~~~~~g~~~~~f~~~~~~~ 81 (279)
|||..+..+.+-...+|..||...-+|+.++-= |+|..|..-|+++
T Consensus 43 ~~RARFden~~kD~~k~~~LLa~ge~E~w~~rH-------pqP~ifp~spGGs 88 (157)
T KOG3466|consen 43 IIRARFDENDEKDVDKAIRLLAEGERELWEWRH-------PQPYIFPDSPGGS 88 (157)
T ss_pred HHHHHhhhhhhhhHHHHHHHHHHHHHHHHhhcC-------CCccccCCCCCCC
Confidence 556666545556778999999999999997643 7888888888663
No 116
>PF04064 DUF384: Domain of unknown function (DUF384); InterPro: IPR007206 This is a protein of unknown function. It is found C-terminal to another domain of unknown function (IPR007205 from INTERPRO).
Probab=36.78 E-value=48 Score=22.72 Aligned_cols=29 Identities=21% Similarity=0.314 Sum_probs=22.1
Q ss_pred hhhhhhhhhcCCCCCCHHHHHHHHHHHHHHHh
Q psy9489 26 AVPLLRQETEKNPQMSKEEAIALIKTCMDLLY 57 (279)
Q Consensus 26 ~~~~l~~~~~~~~~~~~~ea~~l~~~c~~~~~ 57 (279)
+.||||..|++. +-++..+..++++..|.
T Consensus 20 vY~IlRe~h~~E---~d~~V~e~~erlV~iLi 48 (58)
T PF04064_consen 20 VYPILRELHKWE---EDEEVQEACERLVQILI 48 (58)
T ss_pred chHHHHHHHhcc---CCHHHHHHHHHHHHHHh
Confidence 468999999753 34788888888887775
No 117
>PF08269 Cache_2: Cache domain; InterPro: IPR013163 Cache is an extracellular domain that is predicted to have a role in small-molecule recognition in a wide range of proteins, including the animal dihydropyridine-sensitive voltage-gated Ca2+ channel; alpha-2delta subunit, and various bacterial chemotaxis receptors. The name Cache comes from CAlcium channels and CHEmotaxis receptors. This domain consists of an N-terminal part with three predicted strands and an alpha-helix, and a C-terminal part with a strand dyad followed by a relatively unstructured region. The N-terminal portion of the (unpermuted) Cache domain contains three predicted strands that could form a sheet analogous to that present in the core of the PAS domain structure. Cache domains are particularly widespread in bacteria, with Vibrio cholerae. The animal calcium channel alpha-2delta subunits might have acquired a part of their extracellular domains from a bacterial source []. The Cache domain appears to have arisen from the GAF-PAS fold despite their divergent functions []. This entry is composed of the type 2 Cache domain.; PDB: 2QHK_A 4EXO_A.
Probab=34.71 E-value=27 Score=25.77 Aligned_cols=35 Identities=20% Similarity=0.228 Sum_probs=20.4
Q ss_pred hhhhhhhhhhcCC--CCCCHHHHHHHHHHHHHHHhcc
Q psy9489 25 IAVPLLRQETEKN--PQMSKEEAIALIKTCMDLLYVR 59 (279)
Q Consensus 25 ~~~~~l~~~~~~~--~~~~~~ea~~l~~~c~~~~~~r 59 (279)
.+.+++..+++.. ..+|+|||.+++.+-++.+.|-
T Consensus 18 ~a~~~i~~~~~~~~~g~ls~eea~~~a~~~l~~~r~~ 54 (95)
T PF08269_consen 18 SAISLIESYYAQAQAGKLSEEEAQQQAREALRALRYG 54 (95)
T ss_dssp HHHHHTHHHHHC-STT-----TTHHHHHHHHHH--SB
T ss_pred HHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccC
Confidence 4566777776533 2599999999999999888873
No 118
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=33.42 E-value=59 Score=25.20 Aligned_cols=28 Identities=14% Similarity=0.221 Sum_probs=23.7
Q ss_pred hhhhhhcCCCCCCHHHHHHHHHHHHHHHh
Q psy9489 29 LLRQETEKNPQMSKEEAIALIKTCMDLLY 57 (279)
Q Consensus 29 ~l~~~~~~~~~~~~~ea~~l~~~c~~~~~ 57 (279)
+.|..++ +.+||.|||.+++.+-|++++
T Consensus 29 lvDelVk-kGeln~eEak~~vddl~~q~k 56 (108)
T COG3937 29 LVDELVK-KGELNAEEAKRFVDDLLRQAK 56 (108)
T ss_pred HHHHHHH-cCCCCHHHHHHHHHHHHHHHH
Confidence 5677775 368999999999999999887
No 119
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=32.71 E-value=42 Score=23.56 Aligned_cols=28 Identities=21% Similarity=0.419 Sum_probs=21.9
Q ss_pred cchhhhhhhhhhhcCCCCCCHHHHHHHH
Q psy9489 22 GTHIAVPLLRQETEKNPQMSKEEAIALI 49 (279)
Q Consensus 22 g~~~~~~~l~~~~~~~~~~~~~ea~~l~ 49 (279)
|-|++.=.+.++.++||.++++.-+++.
T Consensus 14 Gff~ar~~~~k~l~~NPpine~mir~M~ 41 (64)
T PF03672_consen 14 GFFIARKYMEKQLKENPPINEKMIRAMM 41 (64)
T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHH
Confidence 5566777888888889999998776665
No 120
>PF14591 AF0941-like: AF0941-like; PDB: 1YOZ_B.
Probab=32.24 E-value=43 Score=26.65 Aligned_cols=21 Identities=24% Similarity=0.455 Sum_probs=15.1
Q ss_pred hhhhhhcCCCCCCHHHHHHHHHH
Q psy9489 29 LLRQETEKNPQMSKEEAIALIKT 51 (279)
Q Consensus 29 ~l~~~~~~~~~~~~~ea~~l~~~ 51 (279)
++..+.. .+||+|||.+++++
T Consensus 49 Il~~~~~--Gdi~eEEA~~ll~e 69 (127)
T PF14591_consen 49 ILEDYKS--GDIDEEEALQLLDE 69 (127)
T ss_dssp HHHHHHT--TSS-HHHHHHHHHH
T ss_pred HHHHHHc--CCCCHHHHHHHHHH
Confidence 4555554 68999999999876
No 121
>TIGR01255 pyr_form_ly_1 formate acetyltransferase 1. This model describes formate acetyltransferase 1. More distantly related putative formate acetyltransferases have also been identified, including formate acetyltransferase 2 from E. coli, which is excluded from this model.
Probab=31.99 E-value=46 Score=34.55 Aligned_cols=44 Identities=9% Similarity=0.129 Sum_probs=30.4
Q ss_pred cccccccCCeeeccccc--hhhhhhhhhhhcCCCCCCHHHHHHHHHH
Q psy9489 7 KLGTAYEDKILSFGFGT--HIAVPLLRQETEKNPQMSKEEAIALIKT 51 (279)
Q Consensus 7 ~~~~~~~~~~~~~g~g~--~~~~~~l~~~~~~~~~~~~~ea~~l~~~ 51 (279)
||+...+.+-.|..+|- -|..|.+.+-.+ +..||+|||.+||+-
T Consensus 247 ~l~~~~E~ng~a~S~GR~Dq~L~pYyerDl~-~G~lTeeeAqELid~ 292 (744)
T TIGR01255 247 YLAVVKVINGAAMSLGRTSTFLDIYIERDLA-RGTITEQEAQEFVDD 292 (744)
T ss_pred HHHheeeccCcccCCCccchHHHHHHHhHHh-cCCCCHHHHHHHHHH
Confidence 56777777777777774 244466666654 234999999999943
No 122
>PF02609 Exonuc_VII_S: Exonuclease VII small subunit; InterPro: IPR003761 Exonuclease VII is composed of two non-identical subunits; one large subunit and 4 small ones []. This enzyme catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield nucleoside 5'-phosphates.; GO: 0008855 exodeoxyribonuclease VII activity, 0006308 DNA catabolic process, 0009318 exodeoxyribonuclease VII complex; PDB: 1VP7_F.
Probab=30.67 E-value=63 Score=21.38 Aligned_cols=21 Identities=24% Similarity=0.442 Sum_probs=13.2
Q ss_pred CCCCCHHHHHHHHHHHHHHHh
Q psy9489 37 NPQMSKEEAIALIKTCMDLLY 57 (279)
Q Consensus 37 ~~~~~~~ea~~l~~~c~~~~~ 57 (279)
++++|.||+.++.++.++.+.
T Consensus 17 ~~~~sLdes~~lyeeg~~l~~ 37 (53)
T PF02609_consen 17 SGELSLDESLKLYEEGMELIK 37 (53)
T ss_dssp TT-S-HHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHH
Confidence 368888888777777666554
No 123
>PF11939 DUF3457: Protein of unknown function (DUF3457); InterPro: IPR023994 Members of this family are chaperones for the assembly of [NiFe] hydrogenases, in the family of HybE, which is specific for hydrogenase-2 of Escherichia coli. Members often have an additional N-terminal rubredoxin domain. ; PDB: 2KC5_A.
Probab=30.46 E-value=37 Score=28.16 Aligned_cols=36 Identities=19% Similarity=0.342 Sum_probs=27.0
Q ss_pred cccchhhhhhhhhhhcCCCCCCHHHHHHHHHHHHHHHhc
Q psy9489 20 GFGTHIAVPLLRQETEKNPQMSKEEAIALIKTCMDLLYV 58 (279)
Q Consensus 20 g~g~~~~~~~l~~~~~~~~~~~~~ea~~l~~~c~~~~~~ 58 (279)
|.|.|.+-||+---- +-.+.|+|+++-+.|++.|+.
T Consensus 93 ~~G~y~sCSLfSPm~---~f~~~~~A~~~A~a~l~~l~~ 128 (155)
T PF11939_consen 93 GLGQYLSCSLFSPMD---EFADQEQAVATAEAALRALLS 128 (155)
T ss_dssp TTEEEEEEEEE-------TT--HHHHHHHHHHHHHHHHT
T ss_pred CCCceeEeeccCCCc---cccCHHHHHHHHHHHHHHHhC
Confidence 689999999887764 358999999999999999995
No 124
>smart00252 SH2 Src homology 2 domains. Src homology 2 domains bind phosphotyrosine-containing polypeptides via 2 surface pockets. Specificity is provided via interaction with residues that are distinct from the phosphotyrosine. Only a single occurrence of a SH2 domain has been found in S. cerevisiae.
Probab=30.00 E-value=26 Score=24.96 Aligned_cols=14 Identities=43% Similarity=0.482 Sum_probs=12.4
Q ss_pred CCCCHHHHHHHHHH
Q psy9489 38 PQMSKEEAIALIKT 51 (279)
Q Consensus 38 ~~~~~~ea~~l~~~ 51 (279)
+.|+++||.++|++
T Consensus 6 g~i~r~~Ae~lL~~ 19 (84)
T smart00252 6 GFISREEAEKLLKN 19 (84)
T ss_pred ccCCHHHHHHHHhc
Confidence 58999999999965
No 125
>PRK14065 exodeoxyribonuclease VII small subunit; Provisional
Probab=29.46 E-value=79 Score=23.44 Aligned_cols=28 Identities=25% Similarity=0.516 Sum_probs=20.6
Q ss_pred hhhhhhcCCCCCCHHHHHHHHHHHHHHHhc
Q psy9489 29 LLRQETEKNPQMSKEEAIALIKTCMDLLYV 58 (279)
Q Consensus 29 ~l~~~~~~~~~~~~~ea~~l~~~c~~~~~~ 58 (279)
||++-- +|++|.+|.++|-++.+..|.+
T Consensus 37 iLe~Ln--dpeisL~eSvkLYkeG~~lL~e 64 (86)
T PRK14065 37 AIDRLN--DPNLSLKDGMDLYKTAMQELFL 64 (86)
T ss_pred HHHHhc--CCCCCHHHHHHHHHHHHHHHHH
Confidence 455553 4889999888888888887763
No 126
>PF00887 ACBP: Acyl CoA binding protein; InterPro: IPR000582 Acyl-CoA-binding protein (ACBP) is a small (10 Kd) protein that binds medium- and long-chain acyl-CoA esters with very high affinity and may function as an intracellular carrier of acyl-CoA esters []. ACBP is also known as diazepam binding inhibitor (DBI) or endozepine (EP) because of its ability to displace diazepam from the benzodiazepine (BZD) recognition site located on the GABA type A receptor. It is therefore possible that this protein also acts as a neuropeptide to modulate the action of the GABA receptor []. ACBP is a highly conserved protein of about 90 residues that is found in all four eukaryotic kingdoms, Animalia, Plantae, Fungi and Protista, and in some eubacterial species []. Although ACBP occurs as a completely independent protein, intact ACB domains have been identified in a number of large, multifunctional proteins in a variety of eukaryotic species. These include large membrane-associated proteins with N-terminal ACB domains, multifunctional enzymes with both ACB and peroxisomal enoyl-CoA Delta(3), Delta(2)-enoyl-CoA isomerase domains, and proteins with both an ACB domain and ankyrin repeats (IPR002110 from INTERPRO) []. The ACB domain consists of four alpha-helices arranged in a bowl shape with a highly exposed acyl-CoA-binding site. The ligand is bound through specific interactions with residues on the protein, most notably several conserved positive charges that interact with the phosphate group on the adenosine-3'phosphate moiety, and the acyl chain is sandwiched between the hydrophobic surfaces of CoA and the protein []. Other proteins containing an ACB domain include: Endozepine-like peptide (ELP) (gene DBIL5) from mouse []. ELP is a testis-specific ACBP homologue that may be involved in the energy metabolism of the mature sperm. MA-DBI, a transmembrane protein of unknown function which has been found in mammals. MA-DBI contains a N-terminal ACB domain. DRS-1 [], a human protein of unknown function that contains a N-terminal ACB domain and a C-terminal enoyl-CoA isomerase/hydratase domain. ; GO: 0000062 fatty-acyl-CoA binding; PDB: 2CB8_A 2FJ9_A 2LBB_A 1ST7_A 3EPY_B 2FDQ_C 1NTI_A 1HB8_A 1ACA_A 1NVL_A ....
Probab=29.31 E-value=57 Score=23.85 Aligned_cols=26 Identities=27% Similarity=0.161 Sum_probs=20.2
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHHHHh
Q psy9489 32 QETEKNPQMSKEEAIALIKTCMDLLY 57 (279)
Q Consensus 32 ~~~~~~~~~~~~ea~~l~~~c~~~~~ 57 (279)
+.|+...+||+|||....-+.++++.
T Consensus 58 ~AW~~l~gms~~eA~~~Yi~~v~~~~ 83 (87)
T PF00887_consen 58 DAWKALKGMSKEEAMREYIELVEELI 83 (87)
T ss_dssp HHHHTTTTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHccCCCHHHHHHHHHHHHHHHH
Confidence 34655678999999998888777765
No 127
>PF00017 SH2: SH2 domain; InterPro: IPR000980 The Src homology 2 (SH2) domain is a protein domain of about 100 amino-acid residues first identified as a conserved sequence region between the oncoproteins Src and Fps []. Similar sequences were later found in many other intracellular signal-transducing proteins []. SH2 domains function as regulatory modules of intracellular signalling cascades by interacting with high affinity to phosphotyrosine-containing target peptides in a sequence-specific, SH2 domains recognise between 3-6 residues C-terminal to the phosphorylated tyrosine in a fashion that differs from one SH2 domain to another, and strictly phosphorylation-dependent manner [, , , ]. They are found in a wide variety of protein contexts e.g., in association with catalytic domains of phospholipase Cy (PLCy) and the non-receptor protein tyrosine kinases; within structural proteins such as fodrin and tensin; and in a group of small adaptor molecules, i.e Crk and Nck. The domains are frequently found as repeats in a single protein sequence and will then often bind both mono- and di-phosphorylated substrates. The structure of the SH2 domain belongs to the alpha+beta class, its overall shape forming a compact flattened hemisphere. The core structural elements comprise a central hydrophobic anti-parallel beta-sheet, flanked by 2 short alpha-helices. The loop between strands 2 and 3 provides many of the binding interactions with the phosphate group of its phosphopeptide ligand, and is hence designated the phosphate binding loop, the phosphorylated ligand binds perpendicular to the beta-sheet and typically interacts with the phosphate binding loop and a hydrophobic binding pocket that interacts with a pY+3 side chain. The N- and C-termini of the domain are close together in space and on the opposite face from the phosphopeptide binding surface and it has been speculated that this has facilitated their integration into surface-exposed regions of host proteins [].; GO: 0005515 protein binding; PDB: 1M27_A 1KA6_A 1D4W_B 1D4T_A 1D1Z_B 1KA7_A 1UUR_A 1UUS_A 1BLJ_A 1BLK_A ....
Probab=29.08 E-value=22 Score=24.93 Aligned_cols=41 Identities=29% Similarity=0.432 Sum_probs=27.2
Q ss_pred CCCCHHHHHHHHHHHHHHHhccccccCCCCCCCCCeeecCCCCCCCccccCCCcCcCccCCccEEEEEeCC
Q psy9489 38 PQMSKEEAIALIKTCMDLLYVRDARSGAKNGPSLGKYHDFPNVLPHYFRRSGSFSTPLTTGTSVLGLVFNG 108 (279)
Q Consensus 38 ~~~~~~ea~~l~~~c~~~~~~rd~~~~~~~g~~~~~f~~~~~~~~~~~~~~~~~~~~~~~G~t~lgi~~~~ 108 (279)
++|+++||.++|++ +..+|.|-.=|... ..|.-+|.++.++
T Consensus 4 g~isr~~Ae~~L~~----------------~~~~G~FLvR~s~~--------------~~~~~~Lsv~~~~ 44 (77)
T PF00017_consen 4 GFISRQEAERLLMQ----------------GKPDGTFLVRPSSS--------------KPGKYVLSVRFDG 44 (77)
T ss_dssp ESSHHHHHHHHHHT----------------TSSTTEEEEEEESS--------------STTSEEEEEEETT
T ss_pred CCCCHHHHHHHHHh----------------cCCCCeEEEEeccc--------------ccccccccccccc
Confidence 58999999999964 13567676443221 3355677777777
No 128
>PRK01844 hypothetical protein; Provisional
Probab=26.92 E-value=56 Score=23.49 Aligned_cols=28 Identities=21% Similarity=0.330 Sum_probs=21.6
Q ss_pred cchhhhhhhhhhhcCCCCCCHHHHHHHH
Q psy9489 22 GTHIAVPLLRQETEKNPQMSKEEAIALI 49 (279)
Q Consensus 22 g~~~~~~~l~~~~~~~~~~~~~ea~~l~ 49 (279)
|-|++--.+.++.++||.++++.-+...
T Consensus 21 Gff~ark~~~k~lk~NPpine~mir~Mm 48 (72)
T PRK01844 21 GFFIARKYMMNYLQKNPPINEQMLKMMM 48 (72)
T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHH
Confidence 4456668889999999999997766554
No 129
>cd00173 SH2 Src homology 2 domains; Signal transduction, involved in recognition of phosphorylated tyrosine (pTyr). SH2 domains typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites.
Probab=26.86 E-value=35 Score=24.68 Aligned_cols=14 Identities=43% Similarity=0.539 Sum_probs=12.4
Q ss_pred CCCCHHHHHHHHHH
Q psy9489 38 PQMSKEEAIALIKT 51 (279)
Q Consensus 38 ~~~~~~ea~~l~~~ 51 (279)
.+|+++||.++|+.
T Consensus 5 g~i~r~~Ae~~L~~ 18 (94)
T cd00173 5 GPISREEAEELLKK 18 (94)
T ss_pred cCCCHHHHHHHHhc
Confidence 58999999999965
No 130
>cd01678 PFL1 Pyruvate formate lyase 1. Pyruvate formate lyase catalyzes a key step in anaerobic glycolysis, the conversion of pyruvate and CoenzymeA to formate and acetylCoA. The PFL mechanism involves an unusual radical cleavage of pyruvate in which two cysteines and one glycine form radicals that are required for catalysis. PFL has a ten-stranded alpha/beta barrel domain that is structurally similar to those of all three ribonucleotide reductase (RNR) classes as well as benzylsuccinate synthase and B12-independent glycerol dehydratase.
Probab=26.14 E-value=58 Score=33.87 Aligned_cols=43 Identities=16% Similarity=0.208 Sum_probs=28.3
Q ss_pred cccccccCCeeeccccch--hhhhhhhhhhcCCCCCCHHHHHHHHH
Q psy9489 7 KLGTAYEDKILSFGFGTH--IAVPLLRQETEKNPQMSKEEAIALIK 50 (279)
Q Consensus 7 ~~~~~~~~~~~~~g~g~~--~~~~~l~~~~~~~~~~~~~ea~~l~~ 50 (279)
||+...+.+-.+.-+|-. |-.|.+.+-.++ ..||+|||.+||+
T Consensus 249 ~la~~~E~ng~a~S~GR~DqyL~pyyerDl~~-G~iteeeAqELid 293 (738)
T cd01678 249 YLAAIKEQNGAAMSLGRVSTFLDIYIERDLKA-GTITEAEAQELID 293 (738)
T ss_pred HHHHHhhccccccCCCchhHHHHHHHHHHHHc-CCCCHHHHHHHHH
Confidence 456666666555556643 445666666642 3499999999994
No 131
>PF11417 Inhibitor_G39P: Loader and inhibitor of phage G40P; InterPro: IPR024424 G39P inhibits the initiation of DNA replication by blocking G40P replicative helicase. G39P has a bipartite stricture consisting of a folded N-terminal domain and an unfolded C-terminal domain. The C-terminal is essential for helicase interaction [].; PDB: 1NO1_B.
Probab=25.41 E-value=47 Score=23.75 Aligned_cols=10 Identities=50% Similarity=0.747 Sum_probs=4.4
Q ss_pred CCHHHHHHHH
Q psy9489 40 MSKEEAIALI 49 (279)
Q Consensus 40 ~~~~ea~~l~ 49 (279)
||++|+.+||
T Consensus 1 Mtk~E~~~ll 10 (71)
T PF11417_consen 1 MTKEETAKLL 10 (71)
T ss_dssp --HHHHHHHH
T ss_pred CCHHHHHHHH
Confidence 4555555555
No 132
>PRK00523 hypothetical protein; Provisional
Probab=25.35 E-value=62 Score=23.24 Aligned_cols=28 Identities=14% Similarity=0.415 Sum_probs=21.4
Q ss_pred cchhhhhhhhhhhcCCCCCCHHHHHHHH
Q psy9489 22 GTHIAVPLLRQETEKNPQMSKEEAIALI 49 (279)
Q Consensus 22 g~~~~~~~l~~~~~~~~~~~~~ea~~l~ 49 (279)
|-|++-=.+.++.++||.++++.-++..
T Consensus 22 Gffiark~~~k~l~~NPpine~mir~M~ 49 (72)
T PRK00523 22 GYFVSKKMFKKQIRENPPITENMIRAMY 49 (72)
T ss_pred HHHHHHHHHHHHHHHCcCCCHHHHHHHH
Confidence 4455667889999889999997766554
No 133
>KOG3361|consensus
Probab=23.96 E-value=60 Score=26.24 Aligned_cols=43 Identities=30% Similarity=0.383 Sum_probs=33.2
Q ss_pred cccccccccCCeeeccccchhhhhhhhhhhcCCCCCCHHHHHHHH
Q psy9489 5 VDKLGTAYEDKILSFGFGTHIAVPLLRQETEKNPQMSKEEAIALI 49 (279)
Q Consensus 5 ~d~~~~~~~~~~~~~g~g~~~~~~~l~~~~~~~~~~~~~ea~~l~ 49 (279)
||--|.-....|=..|-|+-+|.|-+-..|- ..+|.|||.++-
T Consensus 73 vd~~g~I~dakFKTFGCGSAIASSS~aTewv--kgkt~dea~kIk 115 (157)
T KOG3361|consen 73 VDDSGVIEDAKFKTFGCGSAIASSSLATEWV--KGKTLDEALKIK 115 (157)
T ss_pred ECCCCcEEEeeeeecccchHhhhhHHHHHHH--ccccHHHHHhcc
Confidence 4555666667788889999999977766664 489999998764
No 134
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=23.56 E-value=52 Score=26.46 Aligned_cols=21 Identities=5% Similarity=0.079 Sum_probs=18.9
Q ss_pred CCCCHHHHHHHHHHHHHHHhc
Q psy9489 38 PQMSKEEAIALIKTCMDLLYV 58 (279)
Q Consensus 38 ~~~~~~ea~~l~~~c~~~~~~ 58 (279)
.+....+.+.+|++|++|+-|
T Consensus 107 ~~~~~~~~R~~L~~~l~Ei~y 127 (134)
T PF08232_consen 107 DESKWKKSRQLLRKYLQEIGY 127 (134)
T ss_pred cHHHHHHHHHHHHHHHHHHHH
Confidence 457889999999999999998
No 135
>PF07087 DUF1353: Protein of unknown function (DUF1353); InterPro: IPR010767 This entry is represented by Campylobacter phage CGC-2007, Cje0229. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical phage and bacterial proteins of around 100 residues in length. The function of this family is unknown.
Probab=23.17 E-value=1.2e+02 Score=22.86 Aligned_cols=36 Identities=17% Similarity=0.165 Sum_probs=28.7
Q ss_pred cchhhhhhhhhhhcCCC---CCCHHHHHHHHHHHHHHHh
Q psy9489 22 GTHIAVPLLRQETEKNP---QMSKEEAIALIKTCMDLLY 57 (279)
Q Consensus 22 g~~~~~~~l~~~~~~~~---~~~~~ea~~l~~~c~~~~~ 57 (279)
|.|+--+++-+++=... ..+++||-+++.++|+++-
T Consensus 44 g~y~~AavvHD~l~~~~~~~~~~r~~aD~iF~~am~~~G 82 (95)
T PF07087_consen 44 GKYLKAAVVHDYLYSRGNDRGRSRKEADRIFREAMRELG 82 (95)
T ss_pred cchhhHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHHhC
Confidence 77887788766663333 6899999999999999875
No 136
>PRK09570 rpoH DNA-directed RNA polymerase subunit H; Reviewed
Probab=22.96 E-value=64 Score=23.62 Aligned_cols=13 Identities=46% Similarity=0.547 Sum_probs=11.7
Q ss_pred CCCHHHHHHHHHH
Q psy9489 39 QMSKEEAIALIKT 51 (279)
Q Consensus 39 ~~~~~ea~~l~~~ 51 (279)
-||.||+.+||++
T Consensus 17 iLs~eE~~~lL~~ 29 (79)
T PRK09570 17 ILSEEEAKKLLKE 29 (79)
T ss_pred ECCHHHHHHHHHH
Confidence 3999999999976
No 137
>smart00389 HOX Homeodomain. DNA-binding factors that are involved in the transcriptional regulation of key developmental processes
Probab=22.54 E-value=1.1e+02 Score=19.63 Aligned_cols=27 Identities=33% Similarity=0.347 Sum_probs=22.8
Q ss_pred hhhhhhhhhcCCCCCCHHHHHHHHHHH
Q psy9489 26 AVPLLRQETEKNPQMSKEEAIALIKTC 52 (279)
Q Consensus 26 ~~~~l~~~~~~~~~~~~~ea~~l~~~c 52 (279)
.+.+|.++|+.++..+.+|-.+|.+.|
T Consensus 11 ~~~~L~~~f~~~~~P~~~~~~~la~~~ 37 (56)
T smart00389 11 QLEELEKEFQKNPYPSREEREELAAKL 37 (56)
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 578899999877888999988888776
No 138
>cd00435 ACBP Acyl CoA binding protein (ACBP) binds thiol esters of long fatty acids and coenzyme A in a one-to-one binding mode with high specificity and affinity. Acyl-CoAs are important intermediates in fatty lipid synthesis and fatty acid degradation and play a role in regulation of intermediary metabolism and gene regulation. The suggested role of ACBP is to act as a intracellular acyl-CoA transporter and pool former. ACBPs are present in a large group of eukaryotic species and several tissue-specific isoforms have been detected.
Probab=22.54 E-value=1e+02 Score=22.59 Aligned_cols=25 Identities=24% Similarity=0.162 Sum_probs=18.7
Q ss_pred hhcCCCCCCHHHHHHHHHHHHHHHh
Q psy9489 33 ETEKNPQMSKEEAIALIKTCMDLLY 57 (279)
Q Consensus 33 ~~~~~~~~~~~ea~~l~~~c~~~~~ 57 (279)
.|+.-.+||+|||.+..-+-+.++.
T Consensus 57 AW~~l~~ms~~eA~~~YV~~~~~l~ 81 (85)
T cd00435 57 AWNSLKGMSKEDAMKAYIAKVEELI 81 (85)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 4555578999999988777666653
No 139
>PF03861 ANTAR: ANTAR domain; InterPro: IPR005561 ANTAR (AmiR and NasR transcription antitermination regulators) is an RNA-binding domain found in bacterial transcription antitermination regulatory proteins []. This domain has been detected in various response regulators of two-component systems, which are structured around two proteins, a histidine kinase and a response regulator. This domain is also found in one-component sensory regulators from a variety of bacteria. Most response regulators interact with DNA, however ANTAR-containing regulators interact with RNA. The majority of the domain consists of a coiled-coil.; PDB: 4AKK_A 1SD5_A 1S8N_A 1QO0_E.
Probab=21.33 E-value=1.1e+02 Score=20.39 Aligned_cols=15 Identities=27% Similarity=0.419 Sum_probs=11.0
Q ss_pred CCCHHHHHHHHHHHH
Q psy9489 39 QMSKEEAIALIKTCM 53 (279)
Q Consensus 39 ~~~~~ea~~l~~~c~ 53 (279)
++|++||+++|.+.-
T Consensus 27 g~~e~~A~~~Lr~~A 41 (56)
T PF03861_consen 27 GLSEDEAYRLLRRQA 41 (56)
T ss_dssp T--HHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHH
Confidence 599999999998753
No 140
>PF11469 Ribonucleas_3_2: Ribonuclease III; InterPro: IPR021568 This archaeal family of proteins has no known function. ; PDB: 1ZTD_A.
Probab=21.18 E-value=65 Score=24.94 Aligned_cols=26 Identities=19% Similarity=0.293 Sum_probs=16.4
Q ss_pred hhhhhhhhcCCCCCCHHHHHHHHHHHH
Q psy9489 27 VPLLRQETEKNPQMSKEEAIALIKTCM 53 (279)
Q Consensus 27 ~~~l~~~~~~~~~~~~~ea~~l~~~c~ 53 (279)
=.++-..|-+ ..||.|||+++|++-+
T Consensus 63 EA~iAyAWLe-g~it~eEaveil~~nl 88 (120)
T PF11469_consen 63 EALIAYAWLE-GKITIEEAVEILKANL 88 (120)
T ss_dssp HHHHHHHHHT-TSS-HHHHHHHHHCT-
T ss_pred HHHHHHHHHh-ccccHHHHHHHHHhcC
Confidence 3444455531 4699999999998755
No 141
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=21.07 E-value=58 Score=20.98 Aligned_cols=34 Identities=35% Similarity=0.521 Sum_probs=22.5
Q ss_pred ccccchhhhhhhhhhhcCCCCCCHHHHHHHHHHHHHHH
Q psy9489 19 FGFGTHIAVPLLRQETEKNPQMSKEEAIALIKTCMDLL 56 (279)
Q Consensus 19 ~g~g~~~~~~~l~~~~~~~~~~~~~ea~~l~~~c~~~~ 56 (279)
=||.-.=+...+++... .|+++.|| ++++|++.|
T Consensus 13 LGy~~~e~~~av~~~~~-~~~~~~e~---~ik~aLk~L 46 (47)
T PF07499_consen 13 LGYSKAEAQKAVSKLLE-KPGMDVEE---LIKQALKLL 46 (47)
T ss_dssp TTS-HHHHHHHHHHHHH-STTS-HHH---HHHHHHCCC
T ss_pred cCCCHHHHHHHHHHhhc-CCCCCHHH---HHHHHHhhc
Confidence 46777777777888775 47888766 777777643
No 142
>PF02042 RWP-RK: RWP-RK domain; InterPro: IPR003035 This domain is named RWP-RK after a conserved motif at the C terminus of the domain. The domain is found in algal minus dominance proteins as well as plant proteins involved in nitrogen-controlled development [].
Probab=21.07 E-value=67 Score=21.54 Aligned_cols=36 Identities=17% Similarity=0.128 Sum_probs=28.0
Q ss_pred chhhhhhhhhhhcCCCCCCHHHHHHHHHHHHHHHhcccccc
Q psy9489 23 THIAVPLLRQETEKNPQMSKEEAIALIKTCMDLLYVRDARS 63 (279)
Q Consensus 23 ~~~~~~~l~~~~~~~~~~~~~ea~~l~~~c~~~~~~rd~~~ 63 (279)
+.+.+--|++|++ |+.+||-+.|.-|...|.+ -||.
T Consensus 3 ~~lt~~~L~~~fh----lp~~eAA~~Lgv~~T~LKr-~CR~ 38 (52)
T PF02042_consen 3 KSLTLEDLSQYFH----LPIKEAAKELGVSVTTLKR-RCRR 38 (52)
T ss_pred CccCHHHHHHHhC----CCHHHHHHHhCCCHHHHHH-HHHH
Confidence 4567778899984 9999999999999777654 4553
No 143
>PRK14068 exodeoxyribonuclease VII small subunit; Provisional
Probab=20.95 E-value=1.2e+02 Score=21.86 Aligned_cols=19 Identities=37% Similarity=0.478 Sum_probs=11.2
Q ss_pred CCCCCHHHHHHHHHHHHHH
Q psy9489 37 NPQMSKEEAIALIKTCMDL 55 (279)
Q Consensus 37 ~~~~~~~ea~~l~~~c~~~ 55 (279)
+++++.||+.++.++.++.
T Consensus 24 ~gdl~Leesl~lyeeG~~L 42 (76)
T PRK14068 24 NETVSLEESLDLYQRGMKL 42 (76)
T ss_pred cCCCCHHHHHHHHHHHHHH
Confidence 3678877766555554433
No 144
>PF12668 DUF3791: Protein of unknown function (DUF3791); InterPro: IPR024269 This entry represents proteins of unknown function.
Probab=20.93 E-value=77 Score=21.67 Aligned_cols=25 Identities=24% Similarity=0.220 Sum_probs=16.5
Q ss_pred hhhhhhhhhcCCCCCCHHHHHHHHHH
Q psy9489 26 AVPLLRQETEKNPQMSKEEAIALIKT 51 (279)
Q Consensus 26 ~~~~l~~~~~~~~~~~~~ea~~l~~~ 51 (279)
++.++.++-+ +.+||.+||.+++++
T Consensus 4 ~v~~Ie~~A~-~~~~s~~ea~~~~~~ 28 (62)
T PF12668_consen 4 VVFCIEEFAK-KLNISGEEAYNYFKR 28 (62)
T ss_pred HHHHHHHHHH-HHCcCHHHHHHHHHH
Confidence 3334444433 247999999999986
No 145
>KOG3997|consensus
Probab=20.86 E-value=80 Score=27.93 Aligned_cols=31 Identities=19% Similarity=0.164 Sum_probs=21.3
Q ss_pred chhhhhhhhhhhcCCCCCCHHHHHHHHHHHHHHHh
Q psy9489 23 THIAVPLLRQETEKNPQMSKEEAIALIKTCMDLLY 57 (279)
Q Consensus 23 ~~~~~~~l~~~~~~~~~~~~~ea~~l~~~c~~~~~ 57 (279)
|+|.-| .|.|. .|+||+|+|....| |.++-+
T Consensus 31 AmFvks--qRkw~-sp~msee~ae~f~k-aa~~~~ 61 (281)
T KOG3997|consen 31 AMFVKS--QRKWN-SPPMSEEVAEKFWK-AARETN 61 (281)
T ss_pred HHHHhC--ccccC-CCCccHHHHHHHHH-HHHhcc
Confidence 344444 45553 38999999888876 888755
No 146
>PLN02641 anthranilate phosphoribosyltransferase
Probab=20.68 E-value=93 Score=29.17 Aligned_cols=27 Identities=22% Similarity=0.299 Sum_probs=21.5
Q ss_pred hhhhhhhhcCCCCCCHHHHHHHHHHHHH
Q psy9489 27 VPLLRQETEKNPQMSKEEAIALIKTCMD 54 (279)
Q Consensus 27 ~~~l~~~~~~~~~~~~~ea~~l~~~c~~ 54 (279)
-+++++-.++ ++||+|||+++++.-|.
T Consensus 5 ~~~l~~l~~g-~~Lt~eEa~~~~~~il~ 31 (343)
T PLN02641 5 RQLIESLIQG-TDLTEEEAEAALDFLLD 31 (343)
T ss_pred HHHHHHHhCC-CCCCHHHHHHHHHHHHc
Confidence 3567777764 69999999999988764
No 147
>PF14850 Pro_dh-DNA_bdg: DNA-binding domain of Proline dehydrogenase; PDB: 2FZM_A 3E2Q_A 3E2S_A 2FZN_A 1K87_A 1TJ2_A 3ITG_B 3E2R_A 1TJ1_A 1TIW_A ....
Probab=20.47 E-value=64 Score=25.35 Aligned_cols=35 Identities=29% Similarity=0.504 Sum_probs=24.8
Q ss_pred CCCHHHHHHHHHHHHHHHhcc-------ccccCCCCCCCCCeeecC
Q psy9489 39 QMSKEEAIALIKTCMDLLYVR-------DARSGAKNGPSLGKYHDF 77 (279)
Q Consensus 39 ~~~~~ea~~l~~~c~~~~~~r-------d~~~~~~~g~~~~~f~~~ 77 (279)
.++-+|++.|+ |+.|-.-| |.-+-|| +..+.|..-
T Consensus 11 ~Lss~EGvaLM--cLAEALLRVPD~~T~d~LI~DK--l~~~dW~~H 52 (114)
T PF14850_consen 11 SLSSQEGVALM--CLAEALLRVPDAATADALIRDK--LGSGDWKSH 52 (114)
T ss_dssp T--HHHHHHHH--HHHHHHHTSSSHHHHHHHHHHT--TTTT-HHHH
T ss_pred CCCcHHHHHHH--HHHHHHHcCCCHHHHHHHHHHH--HhcCChhhc
Confidence 69999999985 99999888 6666777 667666543
No 148
>TIGR01280 xseB exodeoxyribonuclease VII, small subunit. This protein is the small subunit for exodeoxyribonuclease VII. Exodeoxyribonuclease VII is made of a complex of four small subunits to one large subunit. The complex degrades single-stranded DNA into large acid-insoluble oligonucleotides. These nucleotides are then degraded further into acid-soluble oligonucleotides.
Probab=20.29 E-value=1.4e+02 Score=21.02 Aligned_cols=18 Identities=28% Similarity=0.410 Sum_probs=11.0
Q ss_pred CCCCCHHHHHHHHHHHHH
Q psy9489 37 NPQMSKEEAIALIKTCMD 54 (279)
Q Consensus 37 ~~~~~~~ea~~l~~~c~~ 54 (279)
+++++.||+.++.++.++
T Consensus 19 ~~~l~Leesl~lyeeG~~ 36 (67)
T TIGR01280 19 SGDLALEEALNLFERGMA 36 (67)
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 367888776655554443
No 149
>PHA01810 hypothetical protein
Probab=20.27 E-value=1.2e+02 Score=21.91 Aligned_cols=33 Identities=27% Similarity=0.469 Sum_probs=27.2
Q ss_pred hhhhhhhhcCCCCCCHHHHHHHHHHHHHHHhcc
Q psy9489 27 VPLLRQETEKNPQMSKEEAIALIKTCMDLLYVR 59 (279)
Q Consensus 27 ~~~l~~~~~~~~~~~~~ea~~l~~~c~~~~~~r 59 (279)
+-++.+...|+|--|.+.|..|+.-|-+.|.--
T Consensus 19 lqlfnkliqwnpaytfdnainlvsacqqlllny 51 (100)
T PHA01810 19 LQLFNKLIQWNPAYTFDNAINLVSACQQLLLNY 51 (100)
T ss_pred HHHHHHHHhcCcccccchHHHHHHHHHHHHHhc
Confidence 456777777889999999999999998877533
No 150
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.26 E-value=1e+02 Score=22.07 Aligned_cols=28 Identities=21% Similarity=0.411 Sum_probs=20.9
Q ss_pred cchhhhhhhhhhhcCCCCCCHHHHHHHH
Q psy9489 22 GTHIAVPLLRQETEKNPQMSKEEAIALI 49 (279)
Q Consensus 22 g~~~~~~~l~~~~~~~~~~~~~ea~~l~ 49 (279)
|-+++.-++.++.++||.+++|.-+.++
T Consensus 21 G~fiark~~~k~lk~NPpine~~iR~M~ 48 (71)
T COG3763 21 GFFIARKQMKKQLKDNPPINEEMIRMMM 48 (71)
T ss_pred HHHHHHHHHHHHHhhCCCCCHHHHHHHH
Confidence 3456678888999999999986655443
No 151
>smart00463 SMR Small MutS-related domain.
Probab=20.25 E-value=1.2e+02 Score=21.48 Aligned_cols=22 Identities=14% Similarity=0.298 Sum_probs=18.5
Q ss_pred CCCHHHHHHHHHHHHHHHhccc
Q psy9489 39 QMSKEEAIALIKTCMDLLYVRD 60 (279)
Q Consensus 39 ~~~~~ea~~l~~~c~~~~~~rd 60 (279)
.|+.+||+++|++=+.....+.
T Consensus 8 G~~~~eA~~~l~~~l~~~~~~~ 29 (80)
T smart00463 8 GLTVEEALTALDKFLNNARLKG 29 (80)
T ss_pred CCCHHHHHHHHHHHHHHHHHcC
Confidence 5999999999999888777553
Done!