Query psy9489
Match_columns 279
No_of_seqs 353 out of 1756
Neff 7.6
Searched_HMMs 29240
Date Fri Aug 16 20:41:41 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9489.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9489hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nzj_K Proteasome component PR 99.9 1.7E-26 5.7E-31 208.5 9.8 173 69-259 38-248 (287)
2 1g0u_M Proteasome component PR 99.9 3.9E-25 1.3E-29 197.7 7.6 171 69-258 11-225 (266)
3 3nzj_H Proteasome component PU 99.9 1.7E-24 6E-29 192.9 10.5 149 92-258 23-199 (261)
4 1yar_H Proteasome beta subunit 99.9 2.1E-24 7.3E-29 187.4 10.4 146 94-258 4-178 (217)
5 1iru_M 20S proteasome; cell cy 99.9 3.9E-24 1.3E-28 185.0 11.3 149 92-258 2-190 (213)
6 1iru_N 20S proteasome; cell cy 99.9 1.7E-24 5.7E-29 188.1 8.4 150 92-259 2-185 (219)
7 1ryp_H 20S proteasome; multica 99.9 5.6E-24 1.9E-28 183.0 9.8 149 92-258 3-179 (205)
8 1ryp_M 20S proteasome; multica 99.9 1.2E-23 4E-28 183.3 10.7 150 92-259 2-200 (222)
9 1iru_J 20S proteasome; cell cy 99.9 2.3E-23 7.8E-28 179.1 10.5 149 93-258 2-182 (205)
10 3h4p_a Proteasome subunit beta 99.9 1.3E-23 4.4E-28 182.7 8.5 143 98-258 1-174 (219)
11 1ryp_N 20S proteasome; multica 99.9 1.2E-23 4.1E-28 184.5 8.3 150 92-259 2-193 (233)
12 1ryp_A 20S proteasome; multica 99.9 9.3E-24 3.2E-28 186.3 7.2 146 90-254 21-208 (243)
13 1iru_L 20S proteasome; cell cy 99.9 5.3E-23 1.8E-27 176.7 10.5 142 99-258 1-171 (204)
14 3unf_H Proteasome subunit beta 99.9 5.1E-23 1.7E-27 180.7 10.5 142 99-258 1-170 (234)
15 1yar_A Proteasome alpha subuni 99.9 1.6E-23 5.4E-28 183.7 6.8 147 90-255 26-205 (233)
16 1ryp_C 20S proteasome; multica 99.9 1.4E-23 4.7E-28 185.3 6.4 146 90-253 23-202 (244)
17 1j2q_H Proteasome beta subunit 99.9 4.5E-23 1.5E-27 176.9 9.4 142 99-258 1-172 (202)
18 1iru_B 20S proteasome; cell cy 99.9 8.5E-24 2.9E-28 185.4 4.9 146 90-254 23-201 (233)
19 1q5r_H Proteasome beta-type su 99.9 5E-23 1.7E-27 186.4 9.3 150 91-258 58-247 (294)
20 1iru_C 20S proteasome; cell cy 99.9 1.5E-23 5.2E-28 186.9 5.5 150 90-257 23-207 (261)
21 1ryp_L 20S proteasome; multica 99.9 1.1E-22 3.6E-27 175.9 10.6 142 99-258 1-172 (212)
22 1ryp_E 20S proteasome; multica 99.9 3E-23 1E-27 182.9 7.3 145 90-253 18-202 (242)
23 1iru_E 20S proteasome; cell cy 99.9 3.1E-23 1.1E-27 182.7 7.2 145 90-253 26-208 (241)
24 1ryp_I 20S proteasome; multica 99.9 1.2E-22 4.2E-27 176.9 10.5 142 99-258 1-170 (222)
25 2z3b_A ATP-dependent protease 99.9 1.9E-22 6.6E-27 170.2 11.3 140 96-259 3-172 (180)
26 3h4p_A Proteasome subunit alph 99.9 1.8E-23 6.1E-28 186.8 4.8 145 90-253 30-207 (264)
27 1iru_A 20S proteasome; cell cy 99.9 3.6E-23 1.2E-27 182.8 6.7 146 90-254 27-209 (246)
28 1ryp_J 20S proteasome; multica 99.9 1.4E-22 4.7E-27 174.1 10.1 145 96-258 6-181 (204)
29 1iru_H 20S proteasome; cell cy 99.9 1.2E-22 4.3E-27 174.5 9.7 142 99-258 1-171 (205)
30 1ryp_D 20S proteasome; multica 99.9 8.1E-23 2.8E-27 180.1 8.0 145 90-252 20-202 (241)
31 1j2p_A Alpha-ring, proteasome 99.9 7E-23 2.4E-27 181.0 7.6 144 90-253 26-202 (246)
32 1ryp_G 20S proteasome; multica 99.9 5.3E-23 1.8E-27 181.6 6.4 149 90-257 22-206 (244)
33 2jay_A Proteasome; hydrolase; 99.9 1.2E-22 4.3E-27 183.6 8.6 149 91-258 51-239 (291)
34 1iru_K 20S proteasome; cell cy 99.9 1.9E-22 6.6E-27 172.8 9.3 142 99-258 2-175 (201)
35 1iru_I 20S proteasome; cell cy 99.9 4.1E-22 1.4E-26 174.9 11.2 142 99-258 1-170 (234)
36 1ryp_K 20S proteasome; multica 99.9 2.2E-22 7.4E-27 172.0 8.9 142 99-258 2-176 (198)
37 3nzj_F Proteasome component C1 99.9 1.1E-22 3.6E-27 183.7 6.0 146 90-254 26-207 (288)
38 1ryp_B 20S proteasome; multica 99.9 1.6E-22 5.3E-27 179.2 6.7 145 90-253 23-202 (250)
39 1g3k_A ATP-dependent protease 99.9 1E-21 3.5E-26 164.8 10.9 137 99-259 1-165 (174)
40 1iru_G 20S proteasome; cell cy 99.9 8.6E-23 2.9E-27 181.3 3.7 144 90-252 25-202 (254)
41 1q5q_H Proteasome beta-type su 99.9 6.7E-22 2.3E-26 173.6 8.8 142 99-258 1-182 (235)
42 1iru_D 20S proteasome; cell cy 99.9 1.2E-22 4.2E-27 179.7 3.8 144 90-252 21-200 (248)
43 3unf_N Proteasome subunit beta 99.9 9E-22 3.1E-26 168.3 8.9 141 99-258 1-170 (199)
44 1ryp_F 20S proteasome; multica 99.9 1.8E-22 6.2E-27 176.9 4.4 141 90-251 23-200 (233)
45 1m4y_A ATP-dependent protease 99.8 2E-21 6.7E-26 162.6 9.9 136 99-259 1-164 (171)
46 1iru_F 20S proteasome; cell cy 99.8 2.7E-22 9.1E-27 179.1 4.5 144 90-254 24-202 (263)
47 1q5q_A Proteasome alpha-type s 99.8 3.1E-22 1.1E-26 178.3 3.4 147 79-251 6-192 (259)
48 3mi0_A Proteasome subunit alph 99.8 1E-21 3.6E-26 173.7 6.6 138 88-251 17-192 (248)
49 1iru_N 20S proteasome; cell cy 99.8 4E-20 1.4E-24 160.4 10.9 118 161-279 2-120 (219)
50 1ryp_N 20S proteasome; multica 99.8 1.1E-19 3.9E-24 159.1 11.8 118 161-279 2-125 (233)
51 1ryp_A 20S proteasome; multica 99.8 8E-20 2.7E-24 161.0 10.5 122 156-279 18-143 (243)
52 1g0u_M Proteasome component PR 99.8 2.3E-19 7.9E-24 160.2 11.6 121 158-279 32-158 (266)
53 1iru_B 20S proteasome; cell cy 99.8 2.3E-19 7.7E-24 157.2 11.0 122 156-279 20-143 (233)
54 1yar_H Proteasome beta subunit 99.8 7.6E-19 2.6E-23 152.3 12.2 113 163-279 4-116 (217)
55 1iru_M 20S proteasome; cell cy 99.8 1.2E-18 4.1E-23 150.4 12.7 114 162-278 3-117 (213)
56 3h4p_A Proteasome subunit alph 99.8 4.1E-19 1.4E-23 158.5 9.8 122 156-279 27-150 (264)
57 1ryp_C 20S proteasome; multica 99.8 7.9E-19 2.7E-23 154.7 10.9 123 156-279 20-145 (244)
58 1yar_A Proteasome alpha subuni 99.8 1.1E-18 3.7E-23 152.8 11.7 122 156-279 23-146 (233)
59 1ryp_D 20S proteasome; multica 99.8 1.2E-18 4.1E-23 153.3 11.8 123 156-279 17-143 (241)
60 1iru_A 20S proteasome; cell cy 99.8 8.3E-19 2.8E-23 154.8 10.4 121 157-279 25-149 (246)
61 1ryp_M 20S proteasome; multica 99.8 2.1E-18 7.1E-23 150.0 12.6 111 165-278 7-118 (222)
62 1ryp_G 20S proteasome; multica 99.8 7.6E-19 2.6E-23 155.0 9.8 122 156-279 19-142 (244)
63 1j2q_H Proteasome beta subunit 99.8 1.9E-18 6.4E-23 148.0 12.0 109 168-279 1-109 (202)
64 1iru_G 20S proteasome; cell cy 99.8 1.1E-18 3.6E-23 154.9 10.2 121 157-279 23-146 (254)
65 1iru_E 20S proteasome; cell cy 99.8 1.2E-18 4E-23 153.4 10.1 122 156-279 23-151 (241)
66 1iru_D 20S proteasome; cell cy 99.8 1.3E-18 4.5E-23 153.8 10.4 122 156-279 18-142 (248)
67 3h4p_a Proteasome subunit beta 99.8 2.1E-18 7.2E-23 149.7 10.5 110 167-279 1-111 (219)
68 3nzj_F Proteasome component C1 99.8 1.3E-18 4.5E-23 156.9 9.4 121 157-279 24-146 (288)
69 1j2p_A Alpha-ring, proteasome 99.8 2.8E-18 9.7E-23 151.4 11.2 121 156-279 23-145 (246)
70 1ryp_F 20S proteasome; multica 99.8 3.4E-18 1.2E-22 149.7 11.3 119 157-279 21-141 (233)
71 1iru_C 20S proteasome; cell cy 99.8 3.5E-18 1.2E-22 152.1 11.3 123 156-279 20-145 (261)
72 3unf_N Proteasome subunit beta 99.7 7.5E-18 2.6E-22 143.8 11.8 108 168-279 1-109 (199)
73 1iru_J 20S proteasome; cell cy 99.7 6.4E-18 2.2E-22 145.0 11.3 111 166-279 7-119 (205)
74 1iru_L 20S proteasome; cell cy 99.7 1E-17 3.5E-22 143.6 12.3 109 168-279 1-109 (204)
75 1ryp_J 20S proteasome; multica 99.7 1.4E-17 4.8E-22 142.8 12.5 110 166-279 7-118 (204)
76 3nzj_K Proteasome component PR 99.7 9.3E-18 3.2E-22 151.3 11.9 115 162-279 70-185 (287)
77 3nzj_H Proteasome component PU 99.7 1E-17 3.4E-22 149.2 11.8 115 161-279 23-137 (261)
78 1ryp_E 20S proteasome; multica 99.7 5.3E-18 1.8E-22 149.3 9.9 122 156-279 15-145 (242)
79 1iru_F 20S proteasome; cell cy 99.7 1.3E-17 4.4E-22 148.7 11.2 119 157-279 22-142 (263)
80 1ryp_H 20S proteasome; multica 99.7 1.9E-17 6.7E-22 142.0 12.0 114 161-279 3-117 (205)
81 1ryp_B 20S proteasome; multica 99.7 1.5E-17 5E-22 147.2 11.0 123 156-279 20-145 (250)
82 1iru_K 20S proteasome; cell cy 99.7 2.2E-17 7.7E-22 141.2 11.2 110 168-279 2-113 (201)
83 1ryp_K 20S proteasome; multica 99.7 3.2E-17 1.1E-21 139.8 11.8 111 168-279 2-114 (198)
84 1ryp_L 20S proteasome; multica 99.7 3.2E-17 1.1E-21 141.4 11.9 109 168-279 1-110 (212)
85 1iru_H 20S proteasome; cell cy 99.7 3.5E-17 1.2E-21 140.4 12.0 108 168-279 1-109 (205)
86 3unf_H Proteasome subunit beta 99.7 4.1E-17 1.4E-21 143.1 12.0 108 168-279 1-108 (234)
87 1ryp_I 20S proteasome; multica 99.7 5.6E-17 1.9E-21 141.0 12.0 108 168-279 1-108 (222)
88 1q5q_H Proteasome beta-type su 99.7 4.3E-17 1.5E-21 142.9 10.9 109 168-277 1-110 (235)
89 3mi0_A Proteasome subunit alph 99.7 4.5E-17 1.5E-21 143.9 11.1 118 151-279 11-136 (248)
90 1q5r_H Proteasome beta-type su 99.7 3.8E-17 1.3E-21 147.7 10.6 116 161-277 59-175 (294)
91 1iru_I 20S proteasome; cell cy 99.7 8.6E-17 2.9E-21 141.0 12.4 108 168-279 1-108 (234)
92 2jay_A Proteasome; hydrolase; 99.7 9.4E-17 3.2E-21 145.0 9.9 113 164-277 54-167 (291)
93 1q5q_A Proteasome alpha-type s 99.7 1.8E-16 6.3E-21 140.9 11.0 116 153-279 13-136 (259)
94 1m4y_A ATP-dependent protease 99.4 4.5E-13 1.5E-17 111.6 11.2 97 168-272 1-98 (171)
95 2z3b_A ATP-dependent protease 99.4 1.5E-12 5.2E-17 109.4 10.7 100 165-272 3-104 (180)
96 1g3k_A ATP-dependent protease 99.4 2.4E-12 8.1E-17 107.5 11.7 98 168-275 1-99 (174)
97 1ojh_A NBLA; degradation prote 66.8 5.3 0.00018 27.1 3.3 33 25-60 13-45 (65)
98 2q8v_A NBLA protein; phycobili 63.1 6.9 0.00024 26.4 3.3 33 25-60 18-50 (63)
99 1cq3_A Viral chemokine inhibit 62.1 1.9 6.5E-05 35.8 0.4 30 30-59 110-140 (233)
100 3cs5_A Phycobilisome degradati 48.5 4.9 0.00017 26.8 0.6 32 26-60 17-48 (59)
101 2kc5_A Hydrogenase-2 operon pr 43.4 10 0.00036 30.5 1.9 35 20-57 101-135 (162)
102 2cop_A Acyl-coenzyme A binding 39.7 41 0.0014 25.0 4.6 27 32-58 63-89 (109)
103 1r1p_A GRB2-related adaptor pr 38.8 10 0.00036 27.4 1.1 14 38-51 14-27 (100)
104 2xf7_A GP23.1; viral protein; 36.9 14 0.00048 23.0 1.3 21 28-49 22-42 (51)
105 3s9k_A Tyrosine-protein kinase 34.9 23 0.00077 26.1 2.6 15 38-52 14-28 (118)
106 2ekx_A Cytoplasmic tyrosine-pr 33.7 19 0.00065 26.3 1.9 15 38-52 16-30 (110)
107 3hkz_Y DNA-directed RNA polyme 32.9 22 0.00074 25.5 2.0 36 29-66 50-85 (104)
108 4ayb_Q DNA-directed RNA polyme 31.5 38 0.0013 24.3 3.0 35 29-65 50-84 (104)
109 2cb8_A Acyl-COA-binding protei 31.5 44 0.0015 23.7 3.5 26 32-57 57-82 (87)
110 1nrv_A Growth factor receptor- 31.4 26 0.00091 25.2 2.4 14 38-51 10-23 (105)
111 1jyr_A Growth factor receptor- 31.1 22 0.00076 25.3 1.9 14 38-51 8-21 (96)
112 2dm0_A Tyrosine-protein kinase 31.1 27 0.00092 26.2 2.4 15 38-52 21-35 (125)
113 4gwp_D Mediator of RNA polymer 30.8 17 0.00058 27.5 1.1 19 39-57 98-116 (121)
114 1ztd_A Hypothetical protein PF 30.7 22 0.00075 26.7 1.7 25 28-53 75-99 (133)
115 3pqz_A Growth factor receptor- 29.6 29 0.001 25.5 2.4 14 38-51 19-32 (117)
116 3epy_A Acyl-COA-binding domain 29.2 50 0.0017 23.5 3.5 26 32-57 59-84 (89)
117 3tkz_A Tyrosine-protein phosph 28.6 30 0.001 25.1 2.3 15 38-52 12-26 (109)
118 1nkz_B Light-harvesting protei 28.3 31 0.001 21.1 1.8 14 39-52 2-15 (41)
119 1d4t_A T cell signal transduct 28.1 32 0.0011 24.7 2.4 14 38-51 9-22 (104)
120 1hbk_A ACBP, acyl-COA binding 27.8 41 0.0014 23.9 2.8 25 33-57 60-84 (89)
121 1i3z_A EWS/FLI1 activated tran 27.5 25 0.00085 25.2 1.6 14 38-51 8-21 (103)
122 2cia_A Cytoplasmic protein NCK 27.2 35 0.0012 24.5 2.4 14 38-51 10-23 (102)
123 1st7_A ACBP, acyl-COA-binding 27.0 42 0.0014 23.7 2.7 26 32-57 56-81 (86)
124 2ge9_A Tyrosine-protein kinase 26.7 33 0.0011 25.7 2.2 15 38-52 16-30 (125)
125 2gsb_A RAS GTPase-activating p 26.0 34 0.0012 25.4 2.2 15 38-52 21-35 (119)
126 2wh5_A Acyl-COA-binding domain 25.4 62 0.0021 23.9 3.5 26 33-58 68-93 (106)
127 2eob_A 1-phosphatidylinositol- 25.0 36 0.0012 25.5 2.1 14 38-51 24-37 (124)
128 2lbb_A Acyl COA binding protei 24.5 51 0.0017 23.9 2.8 25 33-57 67-91 (96)
129 1hmj_A RPB5, protein (subunit 24.5 37 0.0013 23.8 1.9 13 39-51 14-26 (78)
130 2dlz_A Protein VAV-2; RHO fami 24.1 32 0.0011 25.5 1.7 14 38-51 21-34 (118)
131 4h62_V Mediator of RNA polymer 24.0 64 0.0022 17.7 2.4 17 40-56 9-25 (31)
132 2el8_A Signal-transducing adap 22.7 48 0.0017 24.5 2.5 14 38-51 26-39 (118)
133 2lnw_A VAV-2, guanine nucleoti 22.7 46 0.0016 24.8 2.4 14 38-51 27-40 (122)
134 2hdv_A SH2-B PH domain contain 22.5 21 0.00072 26.2 0.4 15 38-52 14-28 (111)
135 1lgh_B LH II, B800/850, light 22.4 41 0.0014 21.0 1.6 15 39-53 7-21 (45)
136 2aug_A Growth factor receptor- 22.2 36 0.0012 25.6 1.7 14 38-51 31-44 (126)
137 2ysx_A Signaling inositol poly 22.0 35 0.0012 25.2 1.6 15 38-52 15-29 (119)
138 3ov1_A Growth factor receptor- 21.6 41 0.0014 24.9 1.9 14 38-51 11-24 (117)
139 1ka6_A SH2 domain protein 1A; 21.2 49 0.0017 24.8 2.3 14 38-51 9-22 (128)
140 1aot_F FYN protein-tyrosine ki 21.1 42 0.0014 24.0 1.8 14 38-51 10-23 (106)
141 3fau_A NEDD4-binding protein 2 20.9 75 0.0026 21.8 3.0 19 39-57 7-25 (82)
142 2d9i_A NEDD4-binding protein 2 20.6 74 0.0025 22.5 3.0 19 39-57 15-33 (96)
143 2o2a_A Hypothetical protein GB 20.4 47 0.0016 25.4 1.9 56 14-70 64-123 (128)
144 1rja_A Tyrosine-protein kinase 20.3 38 0.0013 24.1 1.4 14 38-51 7-20 (100)
145 2cs0_A Hematopoietic SH2 domai 20.1 49 0.0017 24.5 2.0 13 38-50 21-33 (119)
No 1
>3nzj_K Proteasome component PRE2; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_K* 3nzx_K* 4b4t_5
Probab=99.93 E-value=1.7e-26 Score=208.52 Aligned_cols=173 Identities=20% Similarity=0.277 Sum_probs=126.3
Q ss_pred CC-CCeeecCCCCCCCcc--ccCC-----CcCcCccCCccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceE
Q psy9489 69 PS-LGKYHDFPNVLPHYF--RRSG-----SFSTPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTI 140 (279)
Q Consensus 69 ~~-~~~f~~~~~~~~~~~--~~~~-----~~~~~~~~G~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~ 140 (279)
++ |..|..||..+|.+| .+.. ....++.+|||+|||+++||||||+|+|.+.|.++.+++.+||++|+++++
T Consensus 38 ~~~~~~~~~p~~~~p~~~~~~~~~~~~~~~~~~~v~~GtT~vgik~~dGVVlAaD~r~t~G~li~~~~~~KI~~I~d~i~ 117 (287)
T 3nzj_K 38 QRLAPSLTVPPIASPQQFLRAHTDDSRNPDCKIKIAHGTTTLAFRFQGGIIVAVDSRATAGNWVASQTVKKVIEINPFLL 117 (287)
T ss_dssp --------------------------------------CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEE
T ss_pred CCCCcccccCCCCCHHHHHHHhcccccccchhhheccCceEEEEEECCEEEEEEccccccCceeecCCcceEEEEcCcEE
Confidence 44 778999999999998 2222 234578999999999999999999999999999999999999999999999
Q ss_pred eeecCcccccccchhhhhccc-----------------------------ccccceeeEEEEE-eCCcEEEEEcCCCccC
Q psy9489 141 LGAGNDYADFQYLNDIVKQKI-----------------------------TPLTTGTSVLGLV-FNGGVILAADSAGYYG 190 (279)
Q Consensus 141 ~~~sG~~aD~~~l~~~l~~~~-----------------------------~pi~~g~tvlgi~-~~~gvlia~D~~gs~g 190 (279)
+++||..||+|.|.+.++... .|+..+..+.|++ ..++.|+..|+.|++
T Consensus 118 ~~~aG~~AD~~~l~~~lr~~~~~y~~~~~~~isv~~la~~ls~~l~~~r~~p~~v~~lvaG~D~~~gp~Ly~iDp~G~~- 196 (287)
T 3nzj_K 118 GTMAGGAADCQFWETWLGSQCRLHELREKERISVAAASKILSNLVYQYKGAGLSMGTMICGYTRKEGPTIYYVDSDGTR- 196 (287)
T ss_dssp EECEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTSCCCEEEEEEEEETTTEEEEEEEETTCCE-
T ss_pred EEecCCHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEEEEcCCCCCEEEEECCCceE-
Confidence 999999999999999988511 1222223344787 457899999999987
Q ss_pred ceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhcccccccccCCCCCHHHHHHHHHHHHhhcc
Q psy9489 191 SMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDLHNDGFVLKPKSLHSWLTRVLYNRR 259 (279)
Q Consensus 191 ~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~~ee~~~l~~~~la~~isr~lys~r 259 (279)
+..++++.|+|+ +++..+|++.|+++|+++|+.++..+++.+++.|+.++..
T Consensus 197 -------------~~~~~~AiGsgs----~~a~~~Le~~y~~dms~eEAi~la~~aL~~a~~rD~~sg~ 248 (287)
T 3nzj_K 197 -------------LKGDIFCVGSGQ----TFAYGVLDSNYKWDLSVEDALYLGKRSILAAAHRDAYSGG 248 (287)
T ss_dssp -------------EECSEEEESTTH----HHHHHHHHTSCCTTCCHHHHHHHHHHHHHHHHHHBTTCCS
T ss_pred -------------EEcCeEEEecch----HHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhhCcCCCC
Confidence 677899999999 9999999999999999999999999999999999988753
No 2
>1g0u_M Proteasome component PRE4; ubiquitin, degradation, protease, NTN-hydrolase; 2.40A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 2zcy_M* 3bdm_M* 3mg6_M* 3mg7_M* 3mg8_M* 3nzj_M* 3nzw_M* 3nzx_M*
Probab=99.91 E-value=3.9e-25 Score=197.72 Aligned_cols=171 Identities=20% Similarity=0.288 Sum_probs=130.8
Q ss_pred CCCCeee-cCCCCC-CCccccCCCcCcCccCCccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCc
Q psy9489 69 PSLGKYH-DFPNVL-PHYFRRSGSFSTPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGND 146 (279)
Q Consensus 69 ~~~~~f~-~~~~~~-~~~~~~~~~~~~~~~~G~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~ 146 (279)
| |++|| .||... +....|..++++|+++|+|+|||+++||||||+|+|.+.|.++.+++.+||++|++++++++||.
T Consensus 11 ~-~~~~~~~~~~~~~~~~~~~~~~~~~av~~GtT~vgi~~~dgVVlAaD~r~t~g~~i~~~~~~KI~~i~d~i~~~~aG~ 89 (266)
T 1g0u_M 11 P-ADSTYGAYNTQIANAGASPMVNTQQPIVTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGD 89 (266)
T ss_dssp ------------------------CCCCCEEECCEEEEEETTEEEEEEECCEEETTEEEECCCCCEEECTTSEEEEEEEE
T ss_pred C-CccccccCCcccccccccchhhhccCcccCceEEEEEECCEEEEEEcCCcccCceeecCCcCcEEEcCCCEEEEeccC
Confidence 5 88888 777553 21113567789999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccchhhhhcc-----c--------cccc---------------------ceee--EEEEEeC-CcEEEEEcCCCcc
Q psy9489 147 YADFQYLNDIVKQK-----I--------TPLT---------------------TGTS--VLGLVFN-GGVILAADSAGYY 189 (279)
Q Consensus 147 ~aD~~~l~~~l~~~-----~--------~pi~---------------------~g~t--vlgi~~~-~gvlia~D~~gs~ 189 (279)
.||+|.|.+.++.. . ++++ .+.. +.|++.+ ++.|+..|+.|++
T Consensus 90 ~aD~~~l~~~lr~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~ly~~r~~~~P~~v~~lvaG~D~~~gp~Ly~idp~G~~ 169 (266)
T 1g0u_M 90 ISDMQHIERLLKDLVTENAYDNPLADAEEALEPSYIFEYLATVMYQRRSKMNPLWNAIIVAGVQSNGDQFLRYVNLLGVT 169 (266)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCTTTTTTTSCCHHHHHHHHHHHHHHHHHTTCCCCEEEEEEEECTTSCEEEEEEETTCCE
T ss_pred HHHHHHHHHHHHHHHHHhhhccchhhcCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEEEEcCCCCEEEEEECCCCCE
Confidence 99999999987751 1 1111 1223 2377654 7899999999987
Q ss_pred CceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhccc-----ccccccCCCCCHHHHHHHHHHHHhhc
Q psy9489 190 GSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILD-----DDLHNDGFVLKPKSLHSWLTRVLYNR 258 (279)
Q Consensus 190 g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~-----~~~~ee~~~l~~~~la~~isr~lys~ 258 (279)
...++.+.|+|+ +++..+||+.|++ +|+++|+.++..+++...+.++.++.
T Consensus 170 --------------~~~~~~aiGsgs----~~a~~~Le~~~~~~~~~~~ms~eeA~~la~~al~~a~~rd~~sg 225 (266)
T 1g0u_M 170 --------------YSSPTLATGFGA----HMANPLLRKVVDRESDIPKTTVQVAEEAIVNAMRVLYYRDARSS 225 (266)
T ss_dssp --------------ECCSEEECTHHH----HTHHHHHTTTCSSGGGGGGCCHHHHHHHHHHHHHHHHHHBTTCC
T ss_pred --------------EeCCEEEEccCH----HHHHHHHHHhhcccccCCCCCHHHHHHHHHHHHHHHHHhcCCCC
Confidence 667899999999 9999999999998 89999999999999999999988764
No 3
>3nzj_H Proteasome component PUP1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_H* 3nzx_H* 4b4t_2
Probab=99.91 E-value=1.7e-24 Score=192.92 Aligned_cols=149 Identities=17% Similarity=0.265 Sum_probs=125.4
Q ss_pred CcCccCCccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhccc--------cc
Q psy9489 92 STPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKI--------TP 163 (279)
Q Consensus 92 ~~~~~~G~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~~~--------~p 163 (279)
++++++|+|+|||+++||||||+|+|.+.|.++.+++++||++|++|+++++||..||+|.+.+.++.+. ++
T Consensus 23 ~kav~~GtTivgi~~kdGVVlAaD~r~t~g~li~~~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~lr~~~~~~~~~~~~~ 102 (261)
T 3nzj_H 23 PKATSTGTTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGSNIELHSLYTSRE 102 (261)
T ss_dssp -------CCEEEEEETTEEEEEEECCEEETTEEEETTCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred CcccccCceEEEEEECCEEEEEEcCCcccCCeeccCCcceEEEEcCCEEEEeccCHHHHHHHHHHHHHHHHHhHHhhCCC
Confidence 5688999999999999999999999999999999999999999999999999999999999999988521 11
Q ss_pred cc------------------ceee--EEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHH
Q psy9489 164 LT------------------TGTS--VLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLN 223 (279)
Q Consensus 164 i~------------------~g~t--vlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~ 223 (279)
++ .+.. +.|++.+++.|+..|+.|++ ...++.+.|+|+ +++.
T Consensus 103 ~~v~~~a~~l~~~l~~~~~~~gv~llvaG~D~~Gp~Ly~iDp~G~~--------------~~~~~~aiGsgs----~~a~ 164 (261)
T 3nzj_H 103 PRVVSALQMLKQHLFKYQGHIGAYLIVAGVDPTGSHLFSIHAHGST--------------DVGYYLSLGSGS----LAAM 164 (261)
T ss_dssp CCHHHHHHHHHHHHHHTTTCSCEEEEEEEEETTEEEEEEECTTSCE--------------EECSEEEESTTH----HHHH
T ss_pred CCHHHHHHHHHHHHHHhcCcccEEEEEEEEeCCCCEEEEECCCccE--------------EecCeEEeccch----HHHH
Confidence 11 2233 33787777899999999987 677899999999 9999
Q ss_pred HHHHhhcccccccccCCCCCHHHHHHHHHHHHhhc
Q psy9489 224 DIVKQKILDDDLHNDGFVLKPKSLHSWLTRVLYNR 258 (279)
Q Consensus 224 ~~l~~~~~~~~~~ee~~~l~~~~la~~isr~lys~ 258 (279)
.+||+.|+++|+++|+.++..++|.+.+.+++++.
T Consensus 165 ~~Le~~~~~~ms~eEA~~la~~al~~a~~rD~~sg 199 (261)
T 3nzj_H 165 AVLESHWKQDLTKEEAIKLASDAIQAGIWNDLGSG 199 (261)
T ss_dssp HHHHHHCCSSCCHHHHHHHHHHHHHHHHHHCTTCC
T ss_pred HHHHHHhccCCCHHHHHHHHHHHHHHHHhhCCCCC
Confidence 99999999999999999999999999999988764
No 4
>1yar_H Proteasome beta subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_H 1yau_H 3ipm_H 1pma_B 3jrm_H 3c92_H 3c91_H 3jse_H 3jtl_H
Probab=99.91 E-value=2.1e-24 Score=187.38 Aligned_cols=146 Identities=16% Similarity=0.252 Sum_probs=125.4
Q ss_pred CccCCccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhccc------------
Q psy9489 94 PLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKI------------ 161 (279)
Q Consensus 94 ~~~~G~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~~~------------ 161 (279)
++.+|+|+|||+++||||||+|+|.+.|+++.+++.+||++|++++++++||..||+|.+.+.++...
T Consensus 4 ~~~~Gtt~vgi~~~dgVvlaaD~r~~~g~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~ 83 (217)
T 1yar_H 4 TLETGTTTVGITLKDAVIMATERRVTMENFIMHKNGKKLFQIDTYTGMTIAGLVGDAQVLVRYMKAELELYRLQRRVNMP 83 (217)
T ss_dssp -----CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred CCCCCccEEEEEeCCEEEEEEcCCCCCCCEEecCccCCeEEeCCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHHCCCCC
Confidence 56799999999999999999999999999999999999999999999999999999999999998510
Q ss_pred -----------------ccccceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHH
Q psy9489 162 -----------------TPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLND 224 (279)
Q Consensus 162 -----------------~pi~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~ 224 (279)
.|...+..+.|++ +++.|+..|+.|++ ...++.+.|+|+ +++..
T Consensus 84 v~~la~~l~~~~~~~r~rp~~v~~lvaG~D-~gp~Ly~idp~G~~--------------~~~~~~aiGsgs----~~a~~ 144 (217)
T 1yar_H 84 IEAVATLLSNMLNQVKYMPYMVQLLVGGID-TAPHVFSIDAAGGS--------------VEDIYASTGSGS----PFVYG 144 (217)
T ss_dssp HHHHHHHHHHHHHHTTTSCCCEEEEEEEES-SSEEEEEECTTCCE--------------EEESEEEESTTH----HHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCceEEEEEEEEC-CCCEEEEECCCCCe--------------EecCEEEEcCCH----HHHHH
Confidence 1332333344888 88999999999987 566899999999 99999
Q ss_pred HHHhhcccccccccCCCCCHHHHHHHHHHHHhhc
Q psy9489 225 IVKQKILDDDLHNDGFVLKPKSLHSWLTRVLYNR 258 (279)
Q Consensus 225 ~l~~~~~~~~~~ee~~~l~~~~la~~isr~lys~ 258 (279)
+|++.|+++++.+|+.++..+++...+.++.++.
T Consensus 145 ~Le~~~~~~~s~eea~~la~~al~~~~~rd~~s~ 178 (217)
T 1yar_H 145 VLESQYSEKMTVDEGVDLVIRAISAAKQRDSASG 178 (217)
T ss_dssp HHHHHCCTTCCHHHHHHHHHHHHHHHHHHCTTCC
T ss_pred HHHhhcccCCCHHHHHHHHHHHHHHHHhccCCCC
Confidence 9999999999999999999999999999987764
No 5
>1iru_M 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_L* 3une_L 3unf_L* 3unh_L
Probab=99.91 E-value=3.9e-24 Score=184.95 Aligned_cols=149 Identities=19% Similarity=0.244 Sum_probs=128.0
Q ss_pred CcCcc-CCccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhccc---------
Q psy9489 92 STPLT-TGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKI--------- 161 (279)
Q Consensus 92 ~~~~~-~G~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~~~--------- 161 (279)
|+|+. +|+|+|||+++||||||+|+|.+.+.++.+++.+||++|++|+++++||..||+|.|.+.++...
T Consensus 2 ~~p~v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~ 81 (213)
T 1iru_M 2 FSPYVFNGGTILAIAGEDFAIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNK 81 (213)
T ss_dssp CCSCCCCCCEEEEEEETTEEEEEEECCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred CCCccCCCCcEEEEEeCCEEEEEECCCcccCCEEecCCCCcEEEcCCCEEEEccccHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 56766 99999999999999999999999999999999999999999999999999999999999998511
Q ss_pred --------------------ccccceeeEEEEEeCC-cEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHH
Q psy9489 162 --------------------TPLTTGTSVLGLVFNG-GVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQ 220 (279)
Q Consensus 162 --------------------~pi~~g~tvlgi~~~~-gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~ 220 (279)
.|+..+..+.|++.++ +.|+..|+.|++ ...++.+.|+|+ +
T Consensus 82 ~~~v~~la~~l~~~~y~~r~~P~~v~~lvaG~D~~g~p~Ly~id~~G~~--------------~~~~~~aiGsg~----~ 143 (213)
T 1iru_M 82 AMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDEEGKGAVYSFDPVGSY--------------QRDSFKAGGSAS----A 143 (213)
T ss_dssp CCCHHHHHHHHHHHHHHTTTSCCCEEEEEEEECTTSCEEEEEECTTSCE--------------EEESEEEEETTH----H
T ss_pred CCCHHHHHHHHHHHHHhhCCCCceEEEEEEEEcCCCCEEEEEECCCCCE--------------EECCEEEEeeCH----H
Confidence 1222223333776544 789999999987 567899999999 9
Q ss_pred HHHHHHHhh---------cccccccccCCCCCHHHHHHHHHHHHhhc
Q psy9489 221 YLNDIVKQK---------ILDDDLHNDGFVLKPKSLHSWLTRVLYNR 258 (279)
Q Consensus 221 ~l~~~l~~~---------~~~~~~~ee~~~l~~~~la~~isr~lys~ 258 (279)
++..+|++. |+++++++|+.++..+++.+++.++.++.
T Consensus 144 ~a~~~Le~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~~d~~s~ 190 (213)
T 1iru_M 144 MLQPLLDNQVGFKNMQNVEHVPLSLDRAMRLVKDVFISAAERDVYTG 190 (213)
T ss_dssp HHHHHHHHHTTCCSCSSCCCCCCCHHHHHHHHHHHHHHHHHHBTTSC
T ss_pred HHHHHHhhccccccccccCCCCCCHHHHHHHHHHHHHHHHHhCCccC
Confidence 999999999 77789999999999999999999887764
No 6
>1iru_N 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_M* 3une_M 3unf_M* 3unh_M
Probab=99.90 E-value=1.7e-24 Score=188.12 Aligned_cols=150 Identities=30% Similarity=0.451 Sum_probs=130.7
Q ss_pred CcCccCCccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhccc---------c
Q psy9489 92 STPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKI---------T 162 (279)
Q Consensus 92 ~~~~~~G~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~~~---------~ 162 (279)
++|+.+|+|+|||+++||||||+|+|.+.|.++.+++.+||++|++|+++++||..||+|.|.+.++.+. +
T Consensus 2 ~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~ 81 (219)
T 1iru_N 2 QNPMVTGTSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGASGDYADFQYLKQVLGQMVIDEELLGDGH 81 (219)
T ss_dssp CSCCSEECCCEEEEETTEEEEEEECCEEETTEEEECSCCCEEEETTTEEEEEEEEHHHHHHHHHHHHHHHHHHHHHCSSC
T ss_pred CCCccCCceEEEEEeCCEEEEEECCccccCcEEecCCCCceEEeCCCEEEEeccCHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 5789999999999999999999999999999999999999999999999999999999999999887511 1
Q ss_pred -----------------------cccceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhH
Q psy9489 163 -----------------------PLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADF 219 (279)
Q Consensus 163 -----------------------pi~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~ 219 (279)
|+..+..+.|++..++.|+..|+.|++ ...++.+.|+|+
T Consensus 82 ~~~v~~la~~l~~~ly~~r~~~~P~~v~~lvaG~D~~gp~Ly~id~~G~~--------------~~~~~~aiGsgs---- 143 (219)
T 1iru_N 82 SYSPRAIHSWLTRAMYSRRSKMNPLWNTMVIGGYADGESFLGYVDMLGVA--------------YEAPSLATGYGA---- 143 (219)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTCCCCEEEEEEEEETTEEEEEEECSSCCE--------------EECSEEECTTHH----
T ss_pred CCCHHHHHHHHHHHHHHhcccCCCceEEEEEEEEECCCCEEEEECCCCCe--------------EECCeEEECccH----
Confidence 121222333787667899999999987 667899999999
Q ss_pred HHHHHHHHhhccc--ccccccCCCCCHHHHHHHHHHHHhhcc
Q psy9489 220 QYLNDIVKQKILD--DDLHNDGFVLKPKSLHSWLTRVLYNRR 259 (279)
Q Consensus 220 ~~l~~~l~~~~~~--~~~~ee~~~l~~~~la~~isr~lys~r 259 (279)
+++..+|++.|++ +|+++|+.++..+++.+.+.++.++..
T Consensus 144 ~~a~~~Le~~~~~~~~mt~eea~~l~~~al~~~~~~d~~sg~ 185 (219)
T 1iru_N 144 YLAQPLLREVLEKQPVLSQTEARDLVERCMRVLYYRDARSYN 185 (219)
T ss_dssp HHTHHHHHHHHTSCSCCCHHHHHHHHHHHHHHHHHHBTTCCS
T ss_pred HHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHhcCcCCC
Confidence 9999999999999 999999999999999999999887643
No 7
>1ryp_H 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 3nzj_N* 3nzw_N* 3nzx_N* 1vsy_H 3l5q_B 1g65_N* 1fnt_H 1g0u_N* 1jd2_N* 1z7q_H 2f16_N* 2fak_N* 2fny_N* 2gpl_N* 2zcy_N* 3bdm_N* 3d29_N* 3dy3_N* 3dy4_N* 3e47_N* ...
Probab=99.90 E-value=5.6e-24 Score=183.01 Aligned_cols=149 Identities=16% Similarity=0.200 Sum_probs=129.8
Q ss_pred CcCccCCccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhccc--------c-
Q psy9489 92 STPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKI--------T- 162 (279)
Q Consensus 92 ~~~~~~G~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~~~--------~- 162 (279)
++++++|+|+|||+++||||||+|+|.+.++++.+++.+||++|++|+++++||..||++.+.+.++.+. +
T Consensus 3 ~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~ 82 (205)
T 1ryp_H 3 KGEVSLGASIMAVTFKDGVILGADSRTTTGAYIANRVTDKLTRVHDKIWCCRSGSAADTQAIADIVQYHLELYTSQYGTP 82 (205)
T ss_dssp TTCCBCCCCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEEBHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred CCCCcCCceEEEEEeCCEEEEEEcCCcccCcEEEcCCcCceEEcCCCEEEEccCCHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 5789999999999999999999999999999999999999999999999999999999999999988621 1
Q ss_pred ccc----------------ceeeEE--EEEe-CCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHH
Q psy9489 163 PLT----------------TGTSVL--GLVF-NGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLN 223 (279)
Q Consensus 163 pi~----------------~g~tvl--gi~~-~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~ 223 (279)
++. .+..+| |++. +++.|+..|+.|++ ...++.+.|+|+ +++.
T Consensus 83 ~v~~la~~l~~~~~~~~~~~~~~~lvaG~D~~~gp~Ly~id~~G~~--------------~~~~~~aiGsgs----~~a~ 144 (205)
T 1ryp_H 83 STETAASVFKELCYENKDNLTAGIIVAGYDDKNKGEVYTIPLGGSV--------------HKLPYAIAGSGS----TFIY 144 (205)
T ss_dssp CHHHHHHHHHHHHHHTTTTCCEEEEEEEEETTTEEEEEEECTTSCC--------------EEESEEEESGGG----GGGH
T ss_pred CHHHHHHHHHHHHHhhhcCceEEEEEEEEecCCCcEEEEECCCccE--------------EecCEEEEEecH----HHHH
Confidence 110 233333 7764 56899999999987 567899999999 9999
Q ss_pred HHHHhhcccccccccCCCCCHHHHHHHHHHHHhhc
Q psy9489 224 DIVKQKILDDDLHNDGFVLKPKSLHSWLTRVLYNR 258 (279)
Q Consensus 224 ~~l~~~~~~~~~~ee~~~l~~~~la~~isr~lys~ 258 (279)
.+|++.|+++|+++|+.++..+++.+++.++.++.
T Consensus 145 ~~Le~~~~~~~s~eea~~l~~~al~~a~~~d~~sg 179 (205)
T 1ryp_H 145 GYCDKNFRENMSKEETVDFIKHSLSQAIKWDGSSG 179 (205)
T ss_dssp HHHHHHCCTTCCHHHHHHHHHHHHHHHHHHBTTCC
T ss_pred HHHHhccCCCCCHHHHHHHHHHHHHHHHHhCCccC
Confidence 99999999999999999999999999999988764
No 8
>1ryp_M 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_M* 1jd2_L* 1g65_L 1vsy_M 1z7q_M 2f16_L* 2fak_L* 2fny_L* 2gpl_L* 3d29_L* 3dy3_L* 3dy4_L* 3e47_L* 3gpj_L* 3gpt_L* 3gpw_L* 3hye_L* 3l5q_Q 3mg0_L* 3mg4_L* ...
Probab=99.90 E-value=1.2e-23 Score=183.31 Aligned_cols=150 Identities=18% Similarity=0.173 Sum_probs=128.0
Q ss_pred CcCcc-CCccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhcc--------c-
Q psy9489 92 STPLT-TGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQK--------I- 161 (279)
Q Consensus 92 ~~~~~-~G~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~~--------~- 161 (279)
|+|+. +|+|+|||+++||||||+|+|.+.|.++.+++.+||++|++++++++||..||++.|.+.++.. .
T Consensus 2 ~~p~v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~ 81 (222)
T 1ryp_M 2 FNPYGDNGGTILGIAGEDFAVLAGDTRNITDYSINSRYEPKVFDCGDNIVMSANGFAADGDALVKRFKNSVKWYHFDHND 81 (222)
T ss_dssp CCCCCCCCCEEEEEECSSCEEEEEECCEEETTEEEESCCCCCEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred CCccccCCccEEEEEeCCEEEEEEecccccCCEecCCCcCcEEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 55665 9999999999999999999999999999999999999999999999999999999999998741 1
Q ss_pred cccc-------------------cee--eEEEEEeCC-cEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhH
Q psy9489 162 TPLT-------------------TGT--SVLGLVFNG-GVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADF 219 (279)
Q Consensus 162 ~pi~-------------------~g~--tvlgi~~~~-gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~ 219 (279)
++++ .+. .+.|++.++ +.|+..|+.|++ ...++.+.|+|+
T Consensus 82 ~~~~v~~la~~l~~~ly~~r~~P~~v~~ivaG~D~~g~p~Ly~~dp~G~~--------------~~~~~~a~Gsg~---- 143 (222)
T 1ryp_M 82 KKLSINSAARNIQHLLYGKRFFPYYVHTIIAGLDEDGKGAVYSFDPVGSY--------------EREQCRAGGAAA---- 143 (222)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTSCCCEEEEEEEECTTSCEEEEEECTTSCE--------------EEESEEEEETTH----
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCceEEEEEEEEcCCCCeEEEEECCCcCE--------------EecCEEEEcCcH----
Confidence 2221 122 333776444 799999999987 567899999999
Q ss_pred HHHHHHHHhh-----------------cccccccccCCCCCHHHHHHHHHHHHhhcc
Q psy9489 220 QYLNDIVKQK-----------------ILDDDLHNDGFVLKPKSLHSWLTRVLYNRR 259 (279)
Q Consensus 220 ~~l~~~l~~~-----------------~~~~~~~ee~~~l~~~~la~~isr~lys~r 259 (279)
+++..+|++. |+++++++|+.++..+++.+++.+++++..
T Consensus 144 ~~a~~~Le~~~~~~~~~~~~~~~~~~~~~~~~s~eeA~~la~~al~~a~~rd~~sg~ 200 (222)
T 1ryp_M 144 SLIMPFLDNQVNFKNQYEPGTNGKVKKPLKYLSVEEVIKLVRDSFTSATERHIQVGD 200 (222)
T ss_dssp HHHHHHHHHHTSCTTCBCTTSTTCSBCCCCCCCHHHHHHHHHHHHHHHHHHBTTCCS
T ss_pred HHHHHHHhcccccccccccccccccccCCCCCCHHHHHHHHHHHHHHHHHhcccCCC
Confidence 9999999998 778899999999999999999999887653
No 9
>1iru_J 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_I* 3une_I 3unf_I* 3unh_I
Probab=99.89 E-value=2.3e-23 Score=179.12 Aligned_cols=149 Identities=14% Similarity=0.111 Sum_probs=125.5
Q ss_pred cCcc-CCccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhccc--------c-
Q psy9489 93 TPLT-TGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKI--------T- 162 (279)
Q Consensus 93 ~~~~-~G~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~~~--------~- 162 (279)
+|+. +|+|+|||+++||||||+|+|.+.+.++.+++.+||++|++|+++++||..||+|.|.+.++.+. +
T Consensus 2 ~~~~~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~ 81 (205)
T 1iru_J 2 SIMSYNGGAVMAMKGKNCVAIAADRRFGIQAQLVTTDFQKIFPMGDRLYIGLAGLATDVQTVAQRLKFRLNLYELKEGRQ 81 (205)
T ss_dssp CCTTSSCCEEEEEECSSEEEEEEECCEEETTEEEESCCCCEEECSTTEEEECCSCHHHHHHHHHHHHHHHHHHHHHSSSC
T ss_pred CcccCCCCeEEEEEeCCEEEEEECCccccCCeEeecCCccEEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 3444 89999999999999999999999999999999999999999999999999999999999988521 1
Q ss_pred --------------------cccceeeEEEEEe--CCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHH
Q psy9489 163 --------------------PLTTGTSVLGLVF--NGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQ 220 (279)
Q Consensus 163 --------------------pi~~g~tvlgi~~--~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~ 220 (279)
|+..+..+.|++. +++.|+..|+.|++ .....+.+.|+|+ +
T Consensus 82 ~~v~~la~~l~~~~y~~r~~P~~v~~lvaG~D~~~~~p~Ly~idp~G~~-------------~~~~~~~aiG~gs----~ 144 (205)
T 1iru_J 82 IKPYTLMSMVANLLYEKRFGPYYTEPVIAGLDPKTFKPFICSLDLIGCP-------------MVTDDFVVSGTCA----E 144 (205)
T ss_dssp CCHHHHHHHHHHHHHTTTTSCCSCCCEEEEECTTSCCEEEEEECTTCCE-------------EECSSEEEEETTH----H
T ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEEEEEEeCCCCCeEEEEECCCCCc-------------cccCCeeEeeeCH----H
Confidence 2222233347763 57899999999975 1234678999999 9
Q ss_pred HHHHHHHhhcccccccccCCCCCHHHHHHHHHHHHhhc
Q psy9489 221 YLNDIVKQKILDDDLHNDGFVLKPKSLHSWLTRVLYNR 258 (279)
Q Consensus 221 ~l~~~l~~~~~~~~~~ee~~~l~~~~la~~isr~lys~ 258 (279)
++..+|++.|+++++++|+.++..+++.+.+.++.++.
T Consensus 145 ~a~~~Le~~~~~~~s~eea~~l~~~al~~~~~~d~~s~ 182 (205)
T 1iru_J 145 QMYGMCESLWEPNMDPDHLFETISQAMLNAVDRDAVSG 182 (205)
T ss_dssp HHHHHHHHHCCSSCCHHHHHHHHHHHHHHHGGGBTTSC
T ss_pred HHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHhCcccC
Confidence 99999999999999999999999999999888877654
No 10
>3h4p_a Proteasome subunit beta; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=99.89 E-value=1.3e-23 Score=182.72 Aligned_cols=143 Identities=17% Similarity=0.253 Sum_probs=124.3
Q ss_pred CccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhccc----------------
Q psy9489 98 GTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKI---------------- 161 (279)
Q Consensus 98 G~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~~~---------------- 161 (279)
|+|+|||+++||||||+|+|.+.|.++.+++.+||++|++|+++++||..||+|.|.+.++...
T Consensus 1 Gtt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~l 80 (219)
T 3h4p_a 1 MTTTVGLICDDAVILATDKRASLGNLVADKEAKKLYKIDDYIAMTIAGSVGDAQAIVRLLIAEAKLYKMRTGRNIPPLAC 80 (219)
T ss_dssp -CCEEEEEETTEEEEECCCCEEETTEEEETTCCCEEEEETTEEEECCSCHHHHHHHHHHHHHHHHHHHHHTSSCCCHHHH
T ss_pred CccEEEEEECCEEEEEEcCCcccCCEeeccccceeEEecCCEEEEeeEcHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 7999999999999999999999999999999999999999999999999999999999998511
Q ss_pred -------------ccccceeeEEEEEe-CCcEEEEEcCCCccCceeeecCCCceEEeccc-EEEEeccChhhHHHHHHHH
Q psy9489 162 -------------TPLTTGTSVLGLVF-NGGVILAADSAGYYGSMMRFNDCPRIMQINKF-TILGAGNDYADFQYLNDIV 226 (279)
Q Consensus 162 -------------~pi~~g~tvlgi~~-~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~-~~~~gSG~~aD~~~l~~~l 226 (279)
.|+..+..+.|++. +++.|+..|+.|++ ...+ +.+.|+|+ +++..+|
T Consensus 81 a~~l~~~~~~~~~~P~~v~~lvaG~D~~~gp~Ly~idp~G~~--------------~~~~~~~aiG~gs----~~a~~~L 142 (219)
T 3h4p_a 81 ATLLSNILHSSRMFPFLTQIIIGGYDLLEGAKLFSLDPLGGM--------------NEEKTFTATGSGS----PIAYGVL 142 (219)
T ss_dssp HHHHHHHHHHTTTTTCCCCCEEEEEETTTEEEEEEECSSCCE--------------EECSSEEEESTTH----HHHHHHH
T ss_pred HHHHHHHHHHhcCCCceEEEEEEEEeCCCCcEEEEECCCCce--------------EecCCEEEEcCCH----HHHHHHH
Confidence 13223333448876 57899999999987 5566 99999999 9999999
Q ss_pred HhhcccccccccCCCCCHHHHHHHHHHHHhhc
Q psy9489 227 KQKILDDDLHNDGFVLKPKSLHSWLTRVLYNR 258 (279)
Q Consensus 227 ~~~~~~~~~~ee~~~l~~~~la~~isr~lys~ 258 (279)
++.|+++++++|+.++..++|.+.+.++.++.
T Consensus 143 e~~~~~~ms~eea~~la~~al~~~~~rd~~sg 174 (219)
T 3h4p_a 143 EAGYDRDMSVEEGIKLALNALKSAMERDTFSG 174 (219)
T ss_dssp HTSCCTTCCHHHHHHHHHHHHHHHHTSCSSCC
T ss_pred HHhcCCCCCHHHHHHHHHHHHHHHHhhcCCCC
Confidence 99999999999999999999999998877664
No 11
>1ryp_N 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_N* 1jd2_M* 1g65_M 1vsy_N 1z7q_N 2f16_M* 2fak_M* 2fny_M* 2gpl_M* 3d29_M* 3dy3_M* 3dy4_M* 3e47_M* 3gpj_M* 3gpt_M* 3gpw_M* 3hye_M* 3l5q_R 3mg0_M* 3mg4_M* ...
Probab=99.89 E-value=1.2e-23 Score=184.47 Aligned_cols=150 Identities=23% Similarity=0.354 Sum_probs=129.8
Q ss_pred CcCccCCccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhcc-----c-----
Q psy9489 92 STPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQK-----I----- 161 (279)
Q Consensus 92 ~~~~~~G~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~~-----~----- 161 (279)
++|+++|+|+|||+++||||||+|+|.+.|.++.+++.+||++|++|+++++||..||+|.|.+.++.. .
T Consensus 2 ~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~ 81 (233)
T 1ryp_N 2 QQPIVTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIERLLKDLVTENAYDNPLA 81 (233)
T ss_dssp CCCCEEECCEEEEEETTEEEEEEECCEEETTEEEESCCCCEEEETTTEEEEEEEEHHHHHHHHHHHHHHHHHHHTTCTTT
T ss_pred cccccCCceEEEEEECCEEEEEEcCccccCCeeecCCcCceEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHhhccchh
Confidence 578999999999999999999999999999999999999999999999999999999999999987741 1
Q ss_pred ---cccc---------------------ceee--EEEEEeC-CcEEEEEcCCCccCceeeecCCCceEEecccEEEEecc
Q psy9489 162 ---TPLT---------------------TGTS--VLGLVFN-GGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGN 214 (279)
Q Consensus 162 ---~pi~---------------------~g~t--vlgi~~~-~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG 214 (279)
++++ .+.. +.|++.+ ++.|+..|+.|++ ...++.+.|+|
T Consensus 82 ~~~~~~~v~~la~~l~~~ly~~r~~~~P~~v~~lvaG~D~~~gp~Ly~id~~G~~--------------~~~~~~aiGsg 147 (233)
T 1ryp_N 82 DAEEALEPSYIFEYLATVMYQRRSKMNPLWNAIIVAGVQSNGDQFLRYVNLLGVT--------------YSSPTLATGFG 147 (233)
T ss_dssp TTTTSCCHHHHHHHHHHHHHHHHHTTCCCCEEEEEEEECTTSCEEEEEEETTCCE--------------ECCSEEECTHH
T ss_pred hcCCCCCHHHHHHHHHHHHHHhcCCCCCceEEEEEEEEcCCCCEEEEEECCCcCe--------------EEcCEEEECcC
Confidence 1111 1222 3377654 7899999999987 66789999999
Q ss_pred ChhhHHHHHHHHHhhccc-----ccccccCCCCCHHHHHHHHHHHHhhcc
Q psy9489 215 DYADFQYLNDIVKQKILD-----DDLHNDGFVLKPKSLHSWLTRVLYNRR 259 (279)
Q Consensus 215 ~~aD~~~l~~~l~~~~~~-----~~~~ee~~~l~~~~la~~isr~lys~r 259 (279)
+ +++..+|++.|++ +|+++|+.++..+++...+.++.++..
T Consensus 148 s----~~a~~~Le~~~~~~~~~~~ms~eea~~la~~al~~~~~rd~~sg~ 193 (233)
T 1ryp_N 148 A----HMANPLLRKVVDRESDIPKTTVQVAEEAIVNAMRVLYYRDARSSR 193 (233)
T ss_dssp H----HHHHHHHTTTCSSGGGGGGCCHHHHHHHHHHHHHHHHHHBTTCCS
T ss_pred H----HHHHHHHHHhhccccccCCCCHHHHHHHHHHHHHHHHHhcccCCC
Confidence 9 9999999999998 899999999999999999999887643
No 12
>1ryp_A 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_G* 1g65_G 1vsy_A 2f16_G* 2fak_G* 2fny_G* 2gpl_G* 3d29_G* 3dy3_G* 3dy4_G* 3e47_G* 3gpj_G* 3gpt_G* 3gpw_G* 3hye_G* 3l5q_A 3mg0_G* 3mg4_G* 3oeu_G* 3oev_G* ...
Probab=99.89 E-value=9.3e-24 Score=186.31 Aligned_cols=146 Identities=11% Similarity=0.070 Sum_probs=125.9
Q ss_pred CcCcCccC-CccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhcc--------
Q psy9489 90 SFSTPLTT-GTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQK-------- 160 (279)
Q Consensus 90 ~~~~~~~~-G~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~~-------- 160 (279)
.+++++++ |+|+|||+++||||||+|+|.+ ++++.+++.+||++|++|+++++||+.||+|.|.+.++..
T Consensus 21 YA~~av~~~Gtt~vgi~~~dgVvlaad~r~~-~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~r~~~~~~~~~~ 99 (243)
T 1ryp_A 21 YAFKATNQTNINSLAVRGKDCTVVISQKKVP-DKLLDPTTVSYIFCISRTIGMVVNGPIPDARNAALRAKAEAAEFRYKY 99 (243)
T ss_dssp HHHHHTTTTCCCEEEEECSSEEEEEEECCCC-CTTBCGGGCCSEEECSSSCEEEEESCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCcEEEEEeCCEEEEEEEecCC-ccccCCCcCCceEEECCCEEEEEEecHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678999 9999999999999999999988 9999999999999999999999999999999999998851
Q ss_pred -------------------------cccccceeeEEEEEe-CCcEEEEEcCCCccCceeeecCCCceEEecccEEEEecc
Q psy9489 161 -------------------------ITPLTTGTSVLGLVF-NGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGN 214 (279)
Q Consensus 161 -------------------------~~pi~~g~tvlgi~~-~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG 214 (279)
..|+..+..+.|++. .++.|+..|+.|++ ...++.+.|+|
T Consensus 100 ~~~~~v~~la~~l~~~l~~y~~~~~~rP~~v~~lvaG~D~~~gp~Ly~~dp~G~~--------------~~~~~~a~G~g 165 (243)
T 1ryp_A 100 GYDMPCDVLAKRMANLSQIYTQRAYMRPLGVILTFVSVDEELGPSIYKTDPAGYY--------------VGYKATATGPK 165 (243)
T ss_dssp SSCCCHHHHHHHHHHHHHHHHHBTTSCCCSCEEEEEEEETTTEEEEEEECTTSCE--------------EEBSEEEESTT
T ss_pred CCCCCHHHHHHHHHHHHHHHhccCCccccceEEEEEEEcCCCCcEEEEEcCCCCE--------------EEEEEEEECCC
Confidence 113323334448875 57899999999987 66789999999
Q ss_pred ChhhHHHHHHHHHhhccc-------ccccccCCCCCHHHHHHHHHHH
Q psy9489 215 DYADFQYLNDIVKQKILD-------DDLHNDGFVLKPKSLHSWLTRV 254 (279)
Q Consensus 215 ~~aD~~~l~~~l~~~~~~-------~~~~ee~~~l~~~~la~~isr~ 254 (279)
+ +.+..+|++.|++ +|+++|+.++..+++.+.+.++
T Consensus 166 s----~~a~~~Le~~~~~~~~~~~~~ms~eea~~l~~~al~~~~~rd 208 (243)
T 1ryp_A 166 Q----QEITTNLENHFKKSKIDHINEESWEKVVEFAITHMIDALGTE 208 (243)
T ss_dssp H----HHHHHHHHHHHHHHCSSSCCCSSHHHHHHHHHHHHHHHHTCC
T ss_pred c----HHHHHHHHHHhhhcccccccCCCHHHHHHHHHHHHHHHhccc
Confidence 9 9999999999998 8888888888888888887765
No 13
>1iru_L 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_K* 3une_K 3unf_K* 3unh_K
Probab=99.88 E-value=5.3e-23 Score=176.69 Aligned_cols=142 Identities=21% Similarity=0.280 Sum_probs=124.0
Q ss_pred ccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhccc-----------------
Q psy9489 99 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKI----------------- 161 (279)
Q Consensus 99 ~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~~~----------------- 161 (279)
||+|||+++||||||+|+|.+.|+++.+++.+||++|++|+++++||..||+|.|.+.++.+.
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (204)
T 1iru_L 1 TTTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLARQCRIYELRNKERISVAAAS 80 (204)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECCBCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CeEEEEEeCCEEEEEEcCCcccCCEEEcCcccceEEcCCCEEEEccCcHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 699999999999999999999999999999999999999999999999999999999987511
Q ss_pred ----------c--cccceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhh
Q psy9489 162 ----------T--PLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQK 229 (279)
Q Consensus 162 ----------~--pi~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~ 229 (279)
+ |+..+..+.|++.+++.++..|+.|++ ...++.+.|+|+ +++..+|++.
T Consensus 81 ~~l~~~~~~~r~~~~~v~~lvaG~D~~gp~Ly~idp~G~~--------------~~~~~~aiG~gs----~~a~~~Le~~ 142 (204)
T 1iru_L 81 KLLANMVYQYKGMGLSMGTMICGWDKRGPGLYYVDSEGNR--------------ISGATFSVGSGS----VYAYGVMDRG 142 (204)
T ss_dssp HHHHHHHHTTTTSCCCBEEEEEEECSSSEEEEEEESSSCE--------------EECSEEEESTTH----HHHHHHHHTT
T ss_pred HHHHHHHHHhCCCCeeEEEEEEEEeCCCCEEEEECCCCcE--------------EEeCCEEEEcCH----HHHHHHHhcc
Confidence 1 111223334777678899999999987 667889999999 9999999999
Q ss_pred cccccccccCCCCCHHHHHHHHHHHHhhc
Q psy9489 230 ILDDDLHNDGFVLKPKSLHSWLTRVLYNR 258 (279)
Q Consensus 230 ~~~~~~~ee~~~l~~~~la~~isr~lys~ 258 (279)
|+++++.+|+.++..+++.+.+.++.++.
T Consensus 143 ~~~~~s~eea~~l~~~al~~~~~rd~~s~ 171 (204)
T 1iru_L 143 YSYDLEVEQAYDLARRAIYQATYRDAYSG 171 (204)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHHBTTCC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHhCccCC
Confidence 99999999999999999999999887664
No 14
>3unf_H Proteasome subunit beta type-10; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_H
Probab=99.88 E-value=5.1e-23 Score=180.74 Aligned_cols=142 Identities=20% Similarity=0.206 Sum_probs=125.0
Q ss_pred ccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhccc--------cccc-----
Q psy9489 99 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKI--------TPLT----- 165 (279)
Q Consensus 99 ~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~~~--------~pi~----- 165 (279)
||+|||+++||||||+|+|.+.|.++.+++++||++|++|+++++||..||+|.+.+.++.+. ++++
T Consensus 1 TT~vgi~~kdgVVlaaD~r~t~g~~v~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (234)
T 3unf_H 1 TTIAGLVFRDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGVAADTEMTTRMAASKMELHALSTGREPRVATVT 80 (234)
T ss_dssp CEEEEEECSSEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHCSCCCHHHHH
T ss_pred CeEEEEEeCCEEEEEECCCcccCCEeccCccccEEEecCCEEEEecccHHHHHHHHHHHHHHHHhhHHhcCCCCCHHHHH
Confidence 799999999999999999999999999999999999999999999999999999999988521 1111
Q ss_pred -------------ceee--EEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhc
Q psy9489 166 -------------TGTS--VLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKI 230 (279)
Q Consensus 166 -------------~g~t--vlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~ 230 (279)
.+.. +.|++.+++.|+..|+.|++ ...++.+.|+|+ +++..+|++.|
T Consensus 81 ~~l~~~l~~~~~p~~v~llvaG~D~~gp~Ly~idp~G~~--------------~~~~~~aiGsgs----~~a~~~Le~~~ 142 (234)
T 3unf_H 81 RILRQTLFRYQGHVGASLVVGGVDLNGPQLYEVHPHGSY--------------SRLPFTALGSGQ----GAAVALLEDRF 142 (234)
T ss_dssp HHHHHHHHHTTTCSCEEEEEEEEETTEEEEEEECTTSCE--------------EECSEEEEETTH----HHHHHHHHHHC
T ss_pred HHHHHHHHhcCCCccEEEEEEEEeCCCCEEEEECCCCCE--------------EeccEEEEcCCc----hhhHHHHHhcc
Confidence 2233 33787777899999999987 678899999999 99999999999
Q ss_pred ccccccccCCCCCHHHHHHHHHHHHhhc
Q psy9489 231 LDDDLHNDGFVLKPKSLHSWLTRVLYNR 258 (279)
Q Consensus 231 ~~~~~~ee~~~l~~~~la~~isr~lys~ 258 (279)
+++|+++|+.++..+++.+.+.+++++.
T Consensus 143 ~~~ms~eeA~~la~~al~~~~~~D~~sg 170 (234)
T 3unf_H 143 QPNMTLEAAQELLVEAITAGILSDLGSG 170 (234)
T ss_dssp CSSCCHHHHHHHHHHHHHHHHHHBTTCC
T ss_pred CCCCCHHHHHHHHHHHHHHHHhhcCCCC
Confidence 9999999999999999999999988764
No 15
>1yar_A Proteasome alpha subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_A 1pma_A 3c91_A 3c92_A 3ipm_A 2ku1_A 2ku2_A 1yau_A 3jrm_A 3jse_A 3jtl_A
Probab=99.88 E-value=1.6e-23 Score=183.65 Aligned_cols=147 Identities=18% Similarity=0.205 Sum_probs=123.3
Q ss_pred CcCcCccCCccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhccc--------
Q psy9489 90 SFSTPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKI-------- 161 (279)
Q Consensus 90 ~~~~~~~~G~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~~~-------- 161 (279)
.+++++++|||+|||+++||||||+|+|.+.+ ++.+++.+||++|++|+++++||..||+|.+.+.++.+.
T Consensus 26 ya~~av~~Gtt~vgi~~~dgVvlaaD~r~~~~-~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~ 104 (233)
T 1yar_A 26 YAREAVKKGSTALGMKFANGVLLISDKKVRSR-LIEQNSIEKIQLIDDYVAAVTSGLVADARVLVDFARISAQQEKVTYG 104 (233)
T ss_dssp HHHHHHTTSCCEEEEEETTEEEEEECCCCCCT-TBCSTTCCSEEEEETTEEEEEEEBHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred hHHHHHhcCCcEEEEEECCEEEEEEeccCCcc-cccccccCeEEEecCCEEEEEeeCHHHHHHHHHHHHHHHHHHHHHHC
Confidence 34678999999999999999999999998875 788899999999999999999999999999999988510
Q ss_pred -------------------------ccccceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccCh
Q psy9489 162 -------------------------TPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDY 216 (279)
Q Consensus 162 -------------------------~pi~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~ 216 (279)
+|...+..+.|++.+++.|+..|+.|++ +..++.+.|+|+
T Consensus 105 ~~~~v~~~a~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~~gp~Ly~id~~G~~--------------~~~~~~aiG~gs- 169 (233)
T 1yar_A 105 SLVNIENLVKRVADQMQQYTQYGGVRPYGVSLIFAGIDQIGPRLFDCDPAGTI--------------NEYKATAIGSGK- 169 (233)
T ss_dssp SCCCHHHHHHHHHHHHHHTTTBTTBCCCCEEEEEEEECSSCEEEEEECTTCCE--------------EEBSEEEESTTH-
T ss_pred CCCCHHHHHHHHHHHHHHhcCcCCcCcceEEEEEEEEeCCCCEEEEECCCCCE--------------EeeeEEEEcCCc-
Confidence 1222223333776668899999999987 667899999999
Q ss_pred hhHHHHHHHHHhhcccccccccCCCCCHHHHHHHHHHHH
Q psy9489 217 ADFQYLNDIVKQKILDDDLHNDGFVLKPKSLHSWLTRVL 255 (279)
Q Consensus 217 aD~~~l~~~l~~~~~~~~~~ee~~~l~~~~la~~isr~l 255 (279)
+++..+|++.|+++++++|+.++..+++.+.+.+++
T Consensus 170 ---~~a~~~Le~~~~~~~s~eea~~la~~al~~~~~~d~ 205 (233)
T 1yar_A 170 ---DAVVSFLEREYKENLPEKEAVTLGIKALKSSLEEGE 205 (233)
T ss_dssp ---HHHHHHHHHHCCTTCCHHHHHHHHHHHHHHTSCSSC
T ss_pred ---HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhccC
Confidence 999999999999888888888888888777666543
No 16
>1ryp_C 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_B* 1g65_B 2f16_B* 2fak_B* 2fny_B* 2gpl_B* 3d29_B* 3dy3_B* 3dy4_B* 3e47_B* 3gpj_B* 3gpt_B* 3gpw_B* 3hye_B* 3mg0_B* 3mg4_B* 3okj_B* 3shj_B* 3tdd_B* 3nzj_B* ...
Probab=99.88 E-value=1.4e-23 Score=185.26 Aligned_cols=146 Identities=15% Similarity=0.170 Sum_probs=123.9
Q ss_pred CcCcCccCCccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhccc--------
Q psy9489 90 SFSTPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKI-------- 161 (279)
Q Consensus 90 ~~~~~~~~G~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~~~-------- 161 (279)
++++++++|+|+|||+++||||||+|+|.+.+.++.+++.+||++|++|+++++||..||+|.|.+.++...
T Consensus 23 yA~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~ 102 (244)
T 1ryp_C 23 YALESISHAGTAIGIMASDGIVLAAERKVTSTLLEQDTSTEKLYKLNDKIAVAVAGLTADAEILINTARIHAQNYLKTYN 102 (244)
T ss_dssp HHHHHHTTSCCEEEEEETTEEEEEEECSSCCSSBCSTTCCSSEEESSSSEEEEEEECHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred hHHHHHhcCCcEEEEEeCCEEEEEEeeccCCcCccCCCCCCcEEEECCCEEEEEEEcHHHHHHHHHHHHHHHHHHHHHHC
Confidence 456789999999999999999999999999888877999999999999999999999999999999987511
Q ss_pred -------------------------ccccceeeEEEEE-eCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccC
Q psy9489 162 -------------------------TPLTTGTSVLGLV-FNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGND 215 (279)
Q Consensus 162 -------------------------~pi~~g~tvlgi~-~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~ 215 (279)
+|+..+..+.|++ .+++.|+..|+.|++ ...++.+.|+|+
T Consensus 103 ~~~~v~~la~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~--------------~~~~~~aiGsgs 168 (244)
T 1ryp_C 103 EDIPVEILVRRLSDIKQGYTQHGGLRPFGVSFIYAGYDDRYGYQLYTSNPSGNY--------------TGWKAISVGANT 168 (244)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHBSSCCCCCEEEEEEEEETTTEEEEEEECTTCCE--------------EEBSEEEESTTH
T ss_pred CCCCHHHHHHHHHHHHHHHhccCCccceEEEEEEEEEcCCCCCEEEEECCCccE--------------EeeeEEEECCCc
Confidence 1222223334887 567899999999987 667899999999
Q ss_pred hhhHHHHHHHHHhhcccccccccCCCCCHHHHHHHHHH
Q psy9489 216 YADFQYLNDIVKQKILDDDLHNDGFVLKPKSLHSWLTR 253 (279)
Q Consensus 216 ~aD~~~l~~~l~~~~~~~~~~ee~~~l~~~~la~~isr 253 (279)
+++..+|++.|+++|+++|+.++..+++.+.+.+
T Consensus 169 ----~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~r 202 (244)
T 1ryp_C 169 ----SAAQTLLQMDYKDDMKVDDAIELALKTLSKTTDS 202 (244)
T ss_dssp ----HHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHCSS
T ss_pred ----HHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHhcc
Confidence 9999999999998888888888887777776654
No 17
>1j2q_H Proteasome beta subunit; ubiquitin, CP, hydrolase; HET: CIB; 2.83A {Archaeoglobus fulgidus} SCOP: d.153.1.4
Probab=99.88 E-value=4.5e-23 Score=176.91 Aligned_cols=142 Identities=18% Similarity=0.254 Sum_probs=123.6
Q ss_pred ccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhccc-----------------
Q psy9489 99 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKI----------------- 161 (279)
Q Consensus 99 ~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~~~----------------- 161 (279)
||+|||+++||||||+|+|.+.|+++.+++.+||++|++|+++++||..||+|.+.+.++...
T Consensus 1 tt~vgi~~~dgVvlaad~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~a 80 (202)
T 1j2q_H 1 TTTVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIADRMAMTTAGSVGDAQFLARIIKIEANLYEIRRERKPTVRAIA 80 (202)
T ss_dssp CCEEEEEETTEEEEEEECCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CcEEEEEeCCEEEEEECCCcCcCCEEeeccccCEEEcCCCEEEEecccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 699999999999999999999999999999999999999999999999999999999998511
Q ss_pred ------------ccccceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEeccc-EEEEeccChhhHHHHHHHHHh
Q psy9489 162 ------------TPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKF-TILGAGNDYADFQYLNDIVKQ 228 (279)
Q Consensus 162 ------------~pi~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~-~~~~gSG~~aD~~~l~~~l~~ 228 (279)
.|...+..+.|++.+++.|+..|+.|++ ...+ +.+.|+|+ +++..+|++
T Consensus 81 ~~l~~~~~~~r~rp~~~~~lvaG~D~~gp~Ly~id~~G~~--------------~~~~~~~aiG~g~----~~a~~~Le~ 142 (202)
T 1j2q_H 81 TLTSNLLNSYRYFPYLVQLLIGGIDSEGKSIYSIDPIGGA--------------IEEKDIVATGSGS----LTAYGVLED 142 (202)
T ss_dssp HHHHHHHHHTTTSCCCEEEEEEEEETTEEEEEEECTTCCE--------------EEESSEEEESTTH----HHHHHHHHH
T ss_pred HHHHHHHHhhCCCCceEEEEEEEEeCCCCEEEEECCCCCe--------------eecCCEEEEcCCH----HHHHHHHHh
Confidence 1322223333787667899999999987 5556 99999999 999999999
Q ss_pred hcccccccccCCCCCHHHHHHHHHHHHhhc
Q psy9489 229 KILDDDLHNDGFVLKPKSLHSWLTRVLYNR 258 (279)
Q Consensus 229 ~~~~~~~~ee~~~l~~~~la~~isr~lys~ 258 (279)
.|+++|+++|+.++..+++...+.++.++.
T Consensus 143 ~~~~~~s~eea~~la~~al~~~~~~d~~s~ 172 (202)
T 1j2q_H 143 RFTPEIGVDEAVELAVRAIYSAMKRDSASG 172 (202)
T ss_dssp HCCTTCCHHHHHHHHHHHHHHHHTTCTTSC
T ss_pred hcCCCcCHHHHHHHHHHHHHHHHhcCCCCC
Confidence 999999999999999999999888877654
No 18
>1iru_B 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_A* 3une_A 3unf_A* 3unh_A
Probab=99.88 E-value=8.5e-24 Score=185.39 Aligned_cols=146 Identities=14% Similarity=0.118 Sum_probs=123.1
Q ss_pred CcCcCccCCccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhccc--------
Q psy9489 90 SFSTPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKI-------- 161 (279)
Q Consensus 90 ~~~~~~~~G~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~~~-------- 161 (279)
.+++++++|+|+|||+++||||||+|+|.+ +.++.+++.+||++|++|+++++||..||+|.|.+.++.+.
T Consensus 23 ya~~av~~Gtt~vgi~~~dgVvlaaD~r~~-~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~ 101 (233)
T 1iru_B 23 YALAAVAGGAPSVGIKAANGVVLATEKKQK-SILYDERSVHKVEPITKHIGLVYSGMGPDYRVLVHRARKLAQQYYLVYQ 101 (233)
T ss_dssp HHHHHHHTSCCEEEEECSSCEEEEEECCCC-CSSBCSTTCCSSEESSSSEEEEEEECHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHcCCcEEEEEeCCEEEEEEEecCC-ccccccccCCeEEEECCCEEEEEEEccHHHHHHHHHHHHHHHHHHHHHC
Confidence 356788999999999999999999999987 78999999999999999999999999999999999987510
Q ss_pred -------------------------ccccceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccCh
Q psy9489 162 -------------------------TPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDY 216 (279)
Q Consensus 162 -------------------------~pi~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~ 216 (279)
+|...+..+.|++.+++.|+..|+.|++ +..++.+.|+|+
T Consensus 102 ~~~~v~~la~~l~~~~~~y~~~~~~rP~~v~~lvaG~D~~gp~Ly~id~~G~~--------------~~~~~~aiG~gs- 166 (233)
T 1iru_B 102 EPIPTAQLVQRVASVMQEYTQSGGVRPFGVSLLICGWNEGRPYLFQSDPSGAY--------------FAWKATAMGKNY- 166 (233)
T ss_dssp SCCCHHHHHHHHHHHHHHTTTSBTBCCCSEEEEEEEECSSSEEEEEECTTSCE--------------EEBSEEEESTTH-
T ss_pred CCCCHHHHHHHHHHHHHHhcCcCCCCCcEEEEEEEEEeCCCCeEEEECCCCCE--------------EEeeEEEECCCC-
Confidence 1222223333787667899999999987 667899999999
Q ss_pred hhHHHHHHHHHhhcccccccccCCCCCHHHHHHHHHHH
Q psy9489 217 ADFQYLNDIVKQKILDDDLHNDGFVLKPKSLHSWLTRV 254 (279)
Q Consensus 217 aD~~~l~~~l~~~~~~~~~~ee~~~l~~~~la~~isr~ 254 (279)
+++..+|++.|+++|+++|+.++..+++.+.+.++
T Consensus 167 ---~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~d 201 (233)
T 1iru_B 167 ---VNGKTFLEKRYNEDLELEDAIHTAILTLKESFEGQ 201 (233)
T ss_dssp ---HHHHHHHHHHCCTTCCHHHHHHHHHHHHHTTCCSC
T ss_pred ---HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhcc
Confidence 99999999999988888888887777777666554
No 19
>1q5r_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, hydrolase; 3.10A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_H
Probab=99.88 E-value=5e-23 Score=186.38 Aligned_cols=150 Identities=15% Similarity=0.175 Sum_probs=128.7
Q ss_pred cCcCccCCccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhccc---------
Q psy9489 91 FSTPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKI--------- 161 (279)
Q Consensus 91 ~~~~~~~G~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~~~--------- 161 (279)
+++++.+|||+|||+++||||||+|+|.+.|+++.+++++||++|++++++++||..+|++.|.+.++...
T Consensus 58 a~~Av~~GtTiVgIk~kdGVVlAaD~r~t~G~li~~~~~~KI~~I~~~i~~~~aG~~aD~~~l~~~~r~~~~~y~~~~g~ 137 (294)
T 1q5r_H 58 SGDLAPHGTTIVALTYKGGVLLAGDRRATQGNLIASRDVEAVYVTDEYSAAGIAGTAGIAIELVRLFAVELEHYEKIEGV 137 (294)
T ss_dssp --CCSCBCCCEEEEECSSCEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEEBHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHhcCceEEEEEECCEEEEEEcCccccCceeecCCcceEEEECCcEEEEEeecHHHHHHHHHHHHHHHHHhhHhhCC
Confidence 57789999999999999999999999999999999999999999999999999999999999999988511
Q ss_pred -----------------------ccccceeeEEEEEeC-C-----cEEEEEcCCCccCceeeecCCCceEEecc--cEEE
Q psy9489 162 -----------------------TPLTTGTSVLGLVFN-G-----GVILAADSAGYYGSMMRFNDCPRIMQINK--FTIL 210 (279)
Q Consensus 162 -----------------------~pi~~g~tvlgi~~~-~-----gvlia~D~~gs~g~li~~~~~~kI~~i~~--~~~~ 210 (279)
+|+.....+.|++.+ + +.|+..|+.|++ +.. ++.+
T Consensus 138 ~isv~~la~~la~~l~~~~~~~~rp~~v~lLvaG~D~~~g~~~~~p~Ly~iDp~G~~--------------~e~~~~~~A 203 (294)
T 1q5r_H 138 PLTFDGKANRLASMVRGNLGAAMQGLAVVPLLVGYDLDADDESRAGRIVSYDVVGGR--------------YEERAGYHA 203 (294)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHTTTTCEEEEEEEECTTCSCTTSCEEEEEECSSSCE--------------EECCSSEEE
T ss_pred CCCHHHHHHHHHHHHHHHHhhhcCCcceEEEEEEEeCCCCcCCCCCEEEEECCCCeE--------------EecCCCeEE
Confidence 121111223377654 4 689999999976 555 7999
Q ss_pred EeccChhhHHHHHHHHHhhcccccccccCCCCCHHHHHHHHHHHHhhc
Q psy9489 211 GAGNDYADFQYLNDIVKQKILDDDLHNDGFVLKPKSLHSWLTRVLYNR 258 (279)
Q Consensus 211 ~gSG~~aD~~~l~~~l~~~~~~~~~~ee~~~l~~~~la~~isr~lys~ 258 (279)
.|+|+ +++..+|++.|+++++++|+.++..++|...+.+++++.
T Consensus 204 iGsgs----~~a~~~Le~~y~~~ms~eEAi~la~~aL~~a~~rD~~sG 247 (294)
T 1q5r_H 204 VGSGS----LFAKSALKKIYSPDSDEETALRAAIESLYDAADDDSATG 247 (294)
T ss_dssp ESTTH----HHHHHHHHHHCCSSCCHHHHHHHHHHHHHHHHHHCTTTC
T ss_pred EecCc----HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhhccccC
Confidence 99999 999999999999999999999999999999999988863
No 20
>1iru_C 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_B* 3une_B 3unf_B* 3unh_B
Probab=99.88 E-value=1.5e-23 Score=186.92 Aligned_cols=150 Identities=16% Similarity=0.137 Sum_probs=126.8
Q ss_pred CcCcCccCCccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhccc--------
Q psy9489 90 SFSTPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKI-------- 161 (279)
Q Consensus 90 ~~~~~~~~G~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~~~-------- 161 (279)
++++++++|||+|||+++||||||+|+|.+.+.++.+++.+||++|++|+++++||..||++.|.+.++...
T Consensus 23 YA~~av~~Gtt~vgi~~~dgVVlaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~ 102 (261)
T 1iru_C 23 YAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQ 102 (261)
T ss_dssp HHHHHHTTSCCEEEEBCSSEEEEEECCCCCCTTBCCCSSCSSEEECSSSEEEEEEECHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred hHHHHHhcCCcEEEEEeCCEEEEEEecccCCcccccCCCCccEEEecCCEEEEEeEcHHHHHHHHHHHHHHHHHHHHHHC
Confidence 356789999999999999999999999999999998888999999999999999999999999999987511
Q ss_pred -------------------------ccccceeeEEEEEe-CCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccC
Q psy9489 162 -------------------------TPLTTGTSVLGLVF-NGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGND 215 (279)
Q Consensus 162 -------------------------~pi~~g~tvlgi~~-~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~ 215 (279)
+|+..+..+.|++. .++.|+..|+.|++ +..++.+.|+|+
T Consensus 103 ~~~~v~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~~~gp~Ly~idp~G~~--------------~~~~~~aiGsgs 168 (261)
T 1iru_C 103 EPIPCEQLVTALCDIKQAYTQFGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNY--------------GGWKATCIGNNS 168 (261)
T ss_dssp SCCCHHHHHHHHHHHHHHTTTBSSCCCCCEEEEEEEEETTTEEEEEEEETTTEE--------------EECSEEEESTTT
T ss_pred CCCCHHHHHHHHHHHHHHhccccCcCcceEEEEEEEEeCCCCcEEEEECCCceE--------------EeeeeEEeCccc
Confidence 12222233347873 56899999999987 667899999999
Q ss_pred hhhHHHHHHHHHhhccc-ccccccCCCCCHHHHHHHHHHHHhh
Q psy9489 216 YADFQYLNDIVKQKILD-DDLHNDGFVLKPKSLHSWLTRVLYN 257 (279)
Q Consensus 216 ~aD~~~l~~~l~~~~~~-~~~~ee~~~l~~~~la~~isr~lys 257 (279)
+++..+|++.|++ +|+++|+.++..+++...+.++.++
T Consensus 169 ----~~a~~~Le~~~~~~~ms~eeA~~la~~al~~~~~~d~~s 207 (261)
T 1iru_C 169 ----AAAVSMLKQDYKEGEMTLKSALALAIKVLNKTMDVSKLS 207 (261)
T ss_dssp ----THHHHHHHHHCCTTCCCHHHHHHHHHHHHHHSSSCTTCC
T ss_pred ----HHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhccCCC
Confidence 9999999999998 8888888888888887777665554
No 21
>1ryp_L 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_L 1vsy_L 1z7q_L 3l5q_P 1g65_K* 1g0u_K* 1jd2_K* 2f16_K* 2fak_K* 2fny_K* 2gpl_K* 2zcy_K* 3bdm_K* 3d29_K* 3dy3_K* 3dy4_K* 3e47_K* 3gpj_K* 3gpt_K* 3gpw_K* ...
Probab=99.88 E-value=1.1e-22 Score=175.89 Aligned_cols=142 Identities=23% Similarity=0.303 Sum_probs=123.5
Q ss_pred ccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhccc--------c--------
Q psy9489 99 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKI--------T-------- 162 (279)
Q Consensus 99 ~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~~~--------~-------- 162 (279)
||+|||+++||||||+|+|.+.|+++.+++.+||++|++|+++++||..||+|.|.+.++... +
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (212)
T 1ryp_L 1 TTTLAFRFQGGIIVAVDSRATAGNWVASQTVKRVIEINPFLLGTMAGGAADCQFWETWLGSQCRLHELREKERISVAAAS 80 (212)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECCBCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CcEEEEEeCCEEEEEEcCCcccCCeEecCcccceeeeCCcEEEEccccHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 699999999999999999999999999999999999999999999999999999999988511 1
Q ss_pred -------------cccceeeEEEEE-eCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHh
Q psy9489 163 -------------PLTTGTSVLGLV-FNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQ 228 (279)
Q Consensus 163 -------------pi~~g~tvlgi~-~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~ 228 (279)
|+..+..+.|++ .+++.|+..|+.|++ ...++.+.|+|+ +++..+|++
T Consensus 81 ~~l~~~~~~~~~~p~~v~~lvaG~D~~~gp~Ly~idp~G~~--------------~~~~~~aiGsgs----~~a~~~Le~ 142 (212)
T 1ryp_L 81 KILSNLVYQYKGAGLSMGTMICGYTRKEGPTIYYVDSDGTR--------------LKGDIFCVGSGQ----TFAYGVLDS 142 (212)
T ss_dssp HHHHHHHHHTTTSCCCBEEEEEEEETTTEEEEEEEETTCCE--------------EECSEEEESTTH----HHHHHHHHH
T ss_pred HHHHHHHHhhCCCCceEEEEEEEEeCCCCCEEEEEcCCcee--------------EecCCEEEcCCH----HHHHHHHHh
Confidence 221222333777 457899999999987 667888999999 999999999
Q ss_pred hcccccccccCCCCCHHHHHHHHHHHHhhc
Q psy9489 229 KILDDDLHNDGFVLKPKSLHSWLTRVLYNR 258 (279)
Q Consensus 229 ~~~~~~~~ee~~~l~~~~la~~isr~lys~ 258 (279)
.|+++|+++|+.++..+++...+.++.++.
T Consensus 143 ~~~~~~s~eea~~la~~al~~~~~rd~~s~ 172 (212)
T 1ryp_L 143 NYKWDLSVEDALYLGKRSILAAAHRDAYSG 172 (212)
T ss_dssp HCCTTCCHHHHHHHHHHHHHHHHHHBTTCC
T ss_pred hCCCCCCHHHHHHHHHHHHHHHHHhccccC
Confidence 999999999999999999999999887654
No 22
>1ryp_E 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_D* 1g65_D 2f16_D* 2fak_D* 2fny_D* 2gpl_D* 3d29_D* 3dy3_D* 3dy4_D* 3e47_D* 3gpj_D* 3gpt_D* 3gpw_D* 3hye_D* 3mg0_D* 3mg4_D* 3okj_D* 3shj_D* 3tdd_D* 2z5c_C ...
Probab=99.88 E-value=3e-23 Score=182.88 Aligned_cols=145 Identities=12% Similarity=0.119 Sum_probs=122.8
Q ss_pred CcCcCccCCccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhcc---------
Q psy9489 90 SFSTPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQK--------- 160 (279)
Q Consensus 90 ~~~~~~~~G~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~~--------- 160 (279)
.+++++++|||+|||+++||||||+|+|.+.+.++ +++.+||++|++|+++++||..||+|.+.+.++..
T Consensus 18 yA~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~-~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~ 96 (242)
T 1ryp_E 18 YSLEAIKLGSTAIGIATKEGVVLGVEKRATSPLLE-SDSIEKIVEIDRHIGCAMSGLTADARSMIEHARTAAVTHNLYYD 96 (242)
T ss_dssp HHHHHHTTSCCEEEEECSSCEEEEEECCCSSTTBC-GGGCCCEEEEETTEEEEEEESGGGHHHHHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHcCCCEEEEEECCEEEEEEeecCCCcCcc-CccCCceEEEcCCEEEEEeecHHHHHHHHHHHHHHHHHHHHHHC
Confidence 35678999999999999999999999999988877 89999999999999999999999999999998741
Q ss_pred ------------------------------cccccceeeEEEEE-eCCcEEEEEcCCCccCceeeecCCCceEEecccEE
Q psy9489 161 ------------------------------ITPLTTGTSVLGLV-FNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTI 209 (279)
Q Consensus 161 ------------------------------~~pi~~g~tvlgi~-~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~ 209 (279)
.+|+..+..+.|++ .+++.|+..|+.|++ +..++.
T Consensus 97 ~~~~v~~la~~l~~~~~~~t~~~~~~~~l~~RP~~v~~lvaG~D~~~gp~Ly~idp~G~~--------------~~~~~~ 162 (242)
T 1ryp_E 97 EDINVESLTQSVCDLALRFGEGASGEERLMSRPFGVALLIAGHDADDGYQLFHAEPSGTF--------------YRYNAK 162 (242)
T ss_dssp SCCCHHHHHHHHHTTTTCCBSSCTTSCCCBSSCCSEEEEEEEEETTTEEEEEEECTTSCE--------------EEBSEE
T ss_pred CCCCHHHHHHHHHHHHHHhccccCcccccccCcceEEEEEEEEeCCCCCEEEEECCCCCE--------------eccCEE
Confidence 11222222333787 557899999999987 666899
Q ss_pred EEeccChhhHHHHHHHHHhhcccccccccCCCCCHHHHHHHHHH
Q psy9489 210 LGAGNDYADFQYLNDIVKQKILDDDLHNDGFVLKPKSLHSWLTR 253 (279)
Q Consensus 210 ~~gSG~~aD~~~l~~~l~~~~~~~~~~ee~~~l~~~~la~~isr 253 (279)
+.|+|+ +++..+|++.|+++|+++|+.++..+++.+.+.+
T Consensus 163 aiGsgs----~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~ 202 (242)
T 1ryp_E 163 AIGSGS----EGAQAELLNEWHSSLTLKEAELLVLKILKQVMEE 202 (242)
T ss_dssp EESTTH----HHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHCSS
T ss_pred EECCCC----HHHHHHHHHhhccCCCHHHHHHHHHHHHHHHhhc
Confidence 999999 9999999999999888888888888888777665
No 23
>1iru_E 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_D* 3une_D 3unf_D* 3unh_D
Probab=99.88 E-value=3.1e-23 Score=182.75 Aligned_cols=145 Identities=13% Similarity=0.088 Sum_probs=123.0
Q ss_pred CcCcCccCCccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhcc---------
Q psy9489 90 SFSTPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQK--------- 160 (279)
Q Consensus 90 ~~~~~~~~G~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~~--------- 160 (279)
.+++++.+|||+|||+++||||||+|+|.+.+.++ +++.+||++|++|+++++||..||+|.+.+.++.+
T Consensus 26 ya~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~-~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~ 104 (241)
T 1iru_E 26 YDIEAIKLGSTAIGIQTSEGVCLAVEKRITSPLME-PSSIEKIVEIDAHIGCAMSGLIADAKTLIDKARVETQNHWFTYN 104 (241)
T ss_dssp HHHHHHTTSCCEEEEEETTEEEEEEECCCCCTTBC-TTSCCSEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCcEEEEEcCCEEEEEEecccCCcCcC-ccccceEEEEcCCEEEEEeeChHHHHHHHHHHHHHHHHHHHHhC
Confidence 34678899999999999999999999999988877 89999999999999999999999999999998741
Q ss_pred -----------------------------cccccceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEE
Q psy9489 161 -----------------------------ITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILG 211 (279)
Q Consensus 161 -----------------------------~~pi~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~ 211 (279)
.+|+..+..+.|++.+++.|+..|+.|++ +..++.+.
T Consensus 105 ~~~~v~~~a~~l~~~~~~y~~~~~~~~l~~rp~~v~~lvaG~D~~gp~Ly~idp~G~~--------------~~~~~~ai 170 (241)
T 1iru_E 105 ETMTVESVTQAVSNLALQFGEEDADPGAMSRPFGVALLFGGVDEKGPQLFHMDPSGTF--------------VQCDARAI 170 (241)
T ss_dssp SCCCHHHHHHHHHTTTTCBCSTTCCSSCBSSCCCEEEEEEEEETTEEEEEEECTTSCE--------------EEBSEEEE
T ss_pred CCCCHHHHHHHHHHHHHHHhccccccccccccceEEEEEEEEeCCCCEEEEECCCCcE--------------EecceEEE
Confidence 01222222333787557899999999987 66789999
Q ss_pred eccChhhHHHHHHHHHhhcccccccccCCCCCHHHHHHHHHH
Q psy9489 212 AGNDYADFQYLNDIVKQKILDDDLHNDGFVLKPKSLHSWLTR 253 (279)
Q Consensus 212 gSG~~aD~~~l~~~l~~~~~~~~~~ee~~~l~~~~la~~isr 253 (279)
|+|+ +++..+|++.|+++++++|+.++..+++.+.+.+
T Consensus 171 Gsgs----~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~ 208 (241)
T 1iru_E 171 GSAS----EGAQSSLQELYHKSMTLKEAIKSSLIILKQVMEE 208 (241)
T ss_dssp STTH----HHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHCSS
T ss_pred CCCc----HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhc
Confidence 9999 9999999999999899988888888888777765
No 24
>1ryp_I 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1g0u_H* 1jd2_H* 1g65_H 1vsy_I 1z7q_I 2f16_H* 2fak_H* 2fny_H* 2gpl_H* 3d29_H* 3dy3_H* 3dy4_H* 3e47_H* 3gpj_H* 3gpt_H* 3gpw_H* 3hye_H* 3l5q_M 3mg0_H* 3mg4_H* ...
Probab=99.88 E-value=1.2e-22 Score=176.89 Aligned_cols=142 Identities=15% Similarity=0.236 Sum_probs=124.2
Q ss_pred ccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhccc--------c--------
Q psy9489 99 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKI--------T-------- 162 (279)
Q Consensus 99 ~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~~~--------~-------- 162 (279)
||+|||+++||||||+|+|.+.|.++.+++.+||++|++|+++++||..||+|.+.+.++.+. +
T Consensus 1 TT~vgi~~~dgVvlaaD~r~t~g~~~~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a 80 (222)
T 1ryp_I 1 TTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGSNIELHSLYTSREPRVVSAL 80 (222)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred CeEEEEEECCEEEEEEcCCcccCCeeecCCcccEEEecCCEEEEecccHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 699999999999999999999999999999999999999999999999999999999988521 1
Q ss_pred ------------cccceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhc
Q psy9489 163 ------------PLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKI 230 (279)
Q Consensus 163 ------------pi~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~ 230 (279)
|+..+..+.|++.+++.|+..|+.|++ ...++.+.|+|+ +++..+|++.|
T Consensus 81 ~~l~~~l~~~~~p~~v~~lvaG~D~~gp~Ly~idp~G~~--------------~~~~~~aiGsgs----~~a~~~Le~~~ 142 (222)
T 1ryp_I 81 QMLKQHLFKYQGHIGAYLIVAGVDPTGSHLFSIHAHGST--------------DVGYYLSLGSGS----LAAMAVLESHW 142 (222)
T ss_dssp HHHHHHHHHTTTCSCEEEEEEEEETTEEEEEEECTTSCE--------------EECSEEEESTTH----HHHHHHHHHHC
T ss_pred HHHHHHHhhcCCCCCeeEEEEEEeCCCCEEEEECCCCCE--------------EecCEEEECCCH----HHHHHHHHhhC
Confidence 111122233787677899999999987 677899999999 99999999999
Q ss_pred ccccccccCCCCCHHHHHHHHHHHHhhc
Q psy9489 231 LDDDLHNDGFVLKPKSLHSWLTRVLYNR 258 (279)
Q Consensus 231 ~~~~~~ee~~~l~~~~la~~isr~lys~ 258 (279)
+++|+++|+.++..+++.+.+.+++++.
T Consensus 143 ~~~ms~eeA~~la~~al~~~~~~d~~sg 170 (222)
T 1ryp_I 143 KQDLTKEEAIKLASDAIQAGIWNDLGSG 170 (222)
T ss_dssp CSSCCHHHHHHHHHHHHHHHHHHCTTCC
T ss_pred CCCcCHHHHHHHHHHHHHHHHhccccCC
Confidence 9999999999999999999999887653
No 25
>2z3b_A ATP-dependent protease HSLV; N-terminal nucleophIle hydrolase; 2.50A {Bacillus subtilis} SCOP: d.153.1.4 PDB: 2z3a_A 1yyf_D* 3ty6_A
Probab=99.88 E-value=1.9e-22 Score=170.23 Aligned_cols=140 Identities=12% Similarity=0.139 Sum_probs=120.1
Q ss_pred cCCccEEEEEeCCeEEEEEeCCCccCCc-eeeCCCCceEEe-cCceEeeecCcccccccchhhhhcccccc---------
Q psy9489 96 TTGTSVLGLVFNGGVILAADSAGYYGSM-MRFNDCPRIMQI-NKFTILGAGNDYADFQYLNDIVKQKITPL--------- 164 (279)
Q Consensus 96 ~~G~t~lgi~~~~gVvlaaD~r~~~~~~-i~~~~~~Ki~~i-~~~~~~~~sG~~aD~~~l~~~l~~~~~pi--------- 164 (279)
.+|||+|||+++||||||+|+|.+.|.+ +.+++.+||++| ++|+++++||..||++.|.+.++.+.+..
T Consensus 3 ~~GtTivgi~~~dgVvlaaD~r~t~g~~~i~~~~~~KI~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~y~g~~~~~~~ 82 (180)
T 2z3b_A 3 FHATTIFAVQHKGRSAMSGDGQVTFGQAVVMKHTARKVRKLFNGKVLAGFAGSVADAFTLFEKFEAKLEEYNGNLKRAAV 82 (180)
T ss_dssp BCCCCEEEEEETTEEEEEECCCEEETTTEEEESCCCCEEEETTTTEEEEECSCHHHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred CCCeEEEEEEECCEEEEEECCCccCCCceEecCCCCcEEEECCCCEEEEeCchHHHHHHHHHHHHHHHHHhcCChHHHHH
Confidence 5799999999999999999999999988 999999999999 99999999999999999999988632110
Q ss_pred -------------cce-eeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEec--ccEEEEeccChhhHHHHHHHHHh
Q psy9489 165 -------------TTG-TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQIN--KFTILGAGNDYADFQYLNDIVKQ 228 (279)
Q Consensus 165 -------------~~g-~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~--~~~~~~gSG~~aD~~~l~~~l~~ 228 (279)
..+ ..+++ +++.|+..|+.|++ .. .++.+.|+|+ +++...||+
T Consensus 83 ~l~~~~~~~~~~rp~~~~~lva---d~p~ly~~d~~G~~--------------~~~~~~~~a~Gsgs----~~a~~~le~ 141 (180)
T 2z3b_A 83 ELAKEWRSDKVLRKLEAMLIVM---NQDTLLLVSGTGEV--------------IEPDDGILAIGSGG----NYALAAGRA 141 (180)
T ss_dssp HHHHHHHHCTTGGGCCCCEEEE---CSSCEEEECTTCCE--------------ECCSSSEEEESTTH----HHHHHHHHH
T ss_pred HHHHHHHhhhCcCcceEEEEEE---cCCeEEEECCCCcE--------------EEeCCCEEEECCCH----HHHHHHHHH
Confidence 122 23445 57899999999986 54 4899999999 999999999
Q ss_pred hccc---ccccccCCCCCHHHHHHHHHHHHhhcc
Q psy9489 229 KILD---DDLHNDGFVLKPKSLHSWLTRVLYNRR 259 (279)
Q Consensus 229 ~~~~---~~~~ee~~~l~~~~la~~isr~lys~r 259 (279)
.|++ +|+.+| +..+++..++.|+.++..
T Consensus 142 ~~~~~~~~mt~ee---l~~~al~~a~~rd~~sg~ 172 (180)
T 2z3b_A 142 LKKHAGESMSASE---IARAALETAGEICVYTND 172 (180)
T ss_dssp HHHHHGGGCCHHH---HHHHHHHHHHHHCTTCCS
T ss_pred hhhccCCCCCHHH---HHHHHHHHHHHhcCccCC
Confidence 9997 788877 577999999999998864
No 26
>3h4p_A Proteasome subunit alpha; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=99.87 E-value=1.8e-23 Score=186.76 Aligned_cols=145 Identities=18% Similarity=0.247 Sum_probs=124.2
Q ss_pred CcCcCccCCccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhccc--------
Q psy9489 90 SFSTPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKI-------- 161 (279)
Q Consensus 90 ~~~~~~~~G~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~~~-------- 161 (279)
++++++++|+|+|||+++||||||+|+|.+.+ ++.+++.+||++|++|+++++||..||+|.|.+.++...
T Consensus 30 YA~~av~~Gtt~vgi~~~dgVVlaaD~r~~~~-li~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~~r~~~~~y~~~~~ 108 (264)
T 3h4p_A 30 YAREAVRRGTTAIGIACKDGVVLAVDRRITSK-LVKIRSIEKIFQIDDHVAAATSGLVADARVLIDRARLEAQIYRLTYG 108 (264)
T ss_dssp HHHHHHHHSCCEEEECCSSEEEEEEECCCCST-TBCTTTCCCEEEEETTEEEEEEECSHHHHHHHTTHHHHHHHHHHTTC
T ss_pred hHHHHHhcCCcEEEEEECCEEEEEEecCccCC-ccccCccccEEEecCcEEEEeccchHHHHHHHHHHHHHHHhhHHhcC
Confidence 45678999999999999999999999998865 788999999999999999999999999999999888410
Q ss_pred -------------------------ccccceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccCh
Q psy9489 162 -------------------------TPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDY 216 (279)
Q Consensus 162 -------------------------~pi~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~ 216 (279)
+|+..+..+.|++.+++.|+..|+.|++ +..++.+.|+|+
T Consensus 109 ~~i~v~~la~~l~~~~~~yt~~~~~rP~~v~~lvaG~D~~gp~Ly~iDp~G~~--------------~~~~~~aiGsgs- 173 (264)
T 3h4p_A 109 EEISIEMLAKKICDIKQAYTQHGGVRPFGVSLLIAGIDKNEARLFETDPSGAL--------------IEYKATAIGSGR- 173 (264)
T ss_dssp SCCCHHHHHHHHHHHHHHTTSBSSCCCCSEEEEEEEEETTEEEEEEECTTCCC--------------EEESEEEESTTH-
T ss_pred CCCCHHHHHHHHHHHHHHHhhccCCCCeeEEEEEEEEeCCcCEEEEECCCceE--------------EecCeEEECCCH-
Confidence 1222223334888667899999999987 567899999999
Q ss_pred hhHHHHHHHHHhhcccccccccCCCCCHHHHHHHHHH
Q psy9489 217 ADFQYLNDIVKQKILDDDLHNDGFVLKPKSLHSWLTR 253 (279)
Q Consensus 217 aD~~~l~~~l~~~~~~~~~~ee~~~l~~~~la~~isr 253 (279)
+++..+|++.|+++++++++.++..++|...+.+
T Consensus 174 ---~~a~~~Le~~~~~~ms~eea~~la~~al~~a~~~ 207 (264)
T 3h4p_A 174 ---PVVMELLEKEYRDDITLDEGLELAITALTKANED 207 (264)
T ss_dssp ---HHHTTTHHHHCCTTCCSHHHHHHHHHHHHHHSSS
T ss_pred ---HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999988888888764
No 27
>1iru_A 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_G* 3une_G 3unf_G* 3unh_G
Probab=99.87 E-value=3.6e-23 Score=182.84 Aligned_cols=146 Identities=12% Similarity=0.091 Sum_probs=124.2
Q ss_pred CcCcCccC-CccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhccc-------
Q psy9489 90 SFSTPLTT-GTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKI------- 161 (279)
Q Consensus 90 ~~~~~~~~-G~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~~~------- 161 (279)
.+++++++ |+|+|||+++||||||+|+|.+ +.++.+++.+||++|++|+++++||..||+|.|.+.++.+.
T Consensus 27 ya~~av~~~Gtt~vgi~~~dgVvlaaD~r~~-~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~ 105 (246)
T 1iru_A 27 YAFKAINQGGLTSVAVRGKDCAVIVTQKKVP-DKLLDSSTVTHLFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKY 105 (246)
T ss_dssp HHHHHHHTTCCEEEEEECSSEEEEEEECCCC-CSSBCGGGCCSEEESSSSCEEEEEECHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCEEEEEeCCEEEEEEeecCC-CcccCCCccCceEEECCCEEEEEeccHHHHHHHHHHHHHHHHHHHHHH
Confidence 34568888 9999999999999999999988 79999999999999999999999999999999999988511
Q ss_pred --------------------------ccccceeeEEEEEe-CCcEEEEEcCCCccCceeeecCCCceEEecccEEEEecc
Q psy9489 162 --------------------------TPLTTGTSVLGLVF-NGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGN 214 (279)
Q Consensus 162 --------------------------~pi~~g~tvlgi~~-~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG 214 (279)
+|+..+..+.|++. .++.|+..|+.|++ +..++.+.|+|
T Consensus 106 ~~~~~~~~la~~l~~~~~~y~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~--------------~~~~~~aiG~g 171 (246)
T 1iru_A 106 GYEIPVDMLCKRIADISQVYTQNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYY--------------CGFKATAAGVK 171 (246)
T ss_dssp SSCCCHHHHHHHHHHHHHHHHHBSSBCCCSEEEEEEEEETTTEEEEEEECTTSCE--------------EEBSEEEEETT
T ss_pred CCCCCHHHHHHHHHHHHHHHhcCCCCCCcceEEEEEEEeCCCCeEEEEEcCCeeE--------------EEeeEEEECCC
Confidence 12222233347875 57899999999987 66789999999
Q ss_pred ChhhHHHHHHHHHhhccc--ccccccCCCCCHHHHHHHHHHH
Q psy9489 215 DYADFQYLNDIVKQKILD--DDLHNDGFVLKPKSLHSWLTRV 254 (279)
Q Consensus 215 ~~aD~~~l~~~l~~~~~~--~~~~ee~~~l~~~~la~~isr~ 254 (279)
+ +++..+|++.|++ +++.+|+.++..+++.+++.++
T Consensus 172 s----~~a~~~Le~~~~~~~~ms~eea~~la~~al~~~~~rd 209 (246)
T 1iru_A 172 Q----TESTSFLEKKVKKKFDWTFEQTVETAITCLSTVLSID 209 (246)
T ss_dssp H----HHHHHHHHHHTTSCCCCCHHHHHHHHHHHHHHHTTCC
T ss_pred c----HHHHHHHHHhhcccCCCCHHHHHHHHHHHHHHHhccc
Confidence 9 9999999999998 8888888888888888777765
No 28
>1ryp_J 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_I* 1g65_I 1vsy_J 2f16_I* 2fak_I* 2fny_I* 2gpl_I* 3d29_I* 3dy3_I* 3dy4_I* 3e47_I* 3gpj_I* 3gpt_I* 3gpw_I* 3hye_I* 3l5q_N 3mg0_I* 3mg4_I* 3oeu_I* 3oev_I* ...
Probab=99.87 E-value=1.4e-22 Score=174.11 Aligned_cols=145 Identities=19% Similarity=0.136 Sum_probs=122.5
Q ss_pred cCCccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhccc--------c-----
Q psy9489 96 TTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKI--------T----- 162 (279)
Q Consensus 96 ~~G~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~~~--------~----- 162 (279)
.+|+|+|||+++||||||+|+|.+.+.++.+++.+||++|+ |+++++||..||+|.|.+.++.+. +
T Consensus 6 ~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~-~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~ 84 (204)
T 1ryp_J 6 INGGIVVAMTGKDCVAIACDLRLGSQSLGVSNKFEKIFHYG-HVFLGITGLATDVTTLNEMFRYKTNLYKLKEERAIEPE 84 (204)
T ss_dssp SSCCEEEEEECSSEEEEEEECCEEETTEEEESCCCCEEEET-TEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHH
T ss_pred CCCCeEEEEEeCCEEEEEEcCCcccCCEEeeCCcceEEEeC-CEEEEeeEcHHHHHHHHHHHHHHHHHHhhccCCCCCHH
Confidence 48999999999999999999999999999999999999999 999999999999999999988521 1
Q ss_pred ----------------cccceeeEEEEEe--CCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHH
Q psy9489 163 ----------------PLTTGTSVLGLVF--NGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLND 224 (279)
Q Consensus 163 ----------------pi~~g~tvlgi~~--~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~ 224 (279)
|+..+..+.|++. .++.|+..|+.|++ .....+.+.|+|+ +++..
T Consensus 85 ~la~~l~~~~y~~~~~P~~v~~lvaG~D~~~~gp~Ly~idp~G~~-------------~~~~~~~aiG~gs----~~a~~ 147 (204)
T 1ryp_J 85 TFTQLVSSSLYERRFGPYFVGPVVAGINSKSGKPFIAGFDLIGCI-------------DEAKDFIVSGTAS----DQLFG 147 (204)
T ss_dssp HHHHHHHHHHHTTTTSCCCEEEEEEEECTTTCCEEEEEECTTCCE-------------ECCSSEEEEETTH----HHHHH
T ss_pred HHHHHHHHHHHHhcCCCceEEEEEEEEeCCCCceEEEEECCCCCc-------------cccCceeEeccCH----HHHHH
Confidence 2212223337764 56899999999975 1233678899999 99999
Q ss_pred HHHhhcccccccccCCCCCHHHHHHHHHHHHhhc
Q psy9489 225 IVKQKILDDDLHNDGFVLKPKSLHSWLTRVLYNR 258 (279)
Q Consensus 225 ~l~~~~~~~~~~ee~~~l~~~~la~~isr~lys~ 258 (279)
+|++.|+++++++|+.++..+++.+++.++.++.
T Consensus 148 ~Le~~~~~~~s~eea~~l~~~al~~~~~~d~~s~ 181 (204)
T 1ryp_J 148 MCESLYEPNLEPEDLFETISQALLNAADRDALSG 181 (204)
T ss_dssp HHHHHCCSSCCHHHHHHHHHHHHHHHHTTBTTSC
T ss_pred HHhhhcCCCcCHHHHHHHHHHHHHHHHHhCcccC
Confidence 9999999999999999999999999888877654
No 29
>1iru_H 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_N* 3une_N
Probab=99.87 E-value=1.2e-22 Score=174.50 Aligned_cols=142 Identities=20% Similarity=0.288 Sum_probs=123.7
Q ss_pred ccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhccc-----------------
Q psy9489 99 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKI----------------- 161 (279)
Q Consensus 99 ~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~~~----------------- 161 (279)
||+|||+++||||||+|+|.+.++++.+++.+||++|++|+++++||..||+|.|.+.++...
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (205)
T 1iru_H 1 TTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAA 80 (205)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred CcEEEEEeCCEEEEEEcCCcccCcEEecCCcCceEEcCCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 699999999999999999999999999999999999999999999999999999999988511
Q ss_pred -----------ccccceeeEEEEEe-CCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhh
Q psy9489 162 -----------TPLTTGTSVLGLVF-NGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQK 229 (279)
Q Consensus 162 -----------~pi~~g~tvlgi~~-~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~ 229 (279)
.|+..+..+.|++. +++.++..|+.|++ ...++.+.|+|+ +++..+|++.
T Consensus 81 ~~l~~~~~~~~~p~~~~~lvaG~D~~~gp~ly~~d~~G~~--------------~~~~~~a~Gsgs----~~a~~~Le~~ 142 (205)
T 1iru_H 81 SLFKEMCYRYREDLMAGIIIAGWDPQEGGQVYSVPMGGMM--------------VRQSFAIGGSGS----SYIYGYVDAT 142 (205)
T ss_dssp HHHHHHHHHTTTTCCEEEEEEEEETTTEEEEEEECTTSCC--------------EECSEEEESGGG----GGGHHHHHHH
T ss_pred HHHHHHHHhcCcCccEEEEEEEEeCCCCCEEEEECCCCcE--------------EecCEEEECCCH----HHHHHHHHHh
Confidence 12222233337775 46789999999987 667899999999 9999999999
Q ss_pred cccccccccCCCCCHHHHHHHHHHHHhhc
Q psy9489 230 ILDDDLHNDGFVLKPKSLHSWLTRVLYNR 258 (279)
Q Consensus 230 ~~~~~~~ee~~~l~~~~la~~isr~lys~ 258 (279)
|+++|+.+|+.++..+++.+.+.++.++.
T Consensus 143 ~~~~~s~eea~~l~~~al~~~~~~d~~s~ 171 (205)
T 1iru_H 143 YREGMTKEECLQFTANALALAMERDGSSG 171 (205)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHHBTTCC
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHhccccC
Confidence 99999999999999999999999887764
No 30
>1ryp_D 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_C* 1g65_C 2f16_C* 2fak_C* 2fny_C* 2gpl_C* 3d29_C* 3dy3_C* 3dy4_C* 3e47_C* 3gpj_C* 3gpt_C* 3gpw_C* 3hye_C* 3mg0_C* 3mg4_C* 3oeu_C* 3oev_C* 3okj_C* 3shj_C* ...
Probab=99.87 E-value=8.1e-23 Score=180.06 Aligned_cols=145 Identities=13% Similarity=0.133 Sum_probs=124.5
Q ss_pred CcCcCccCCccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhccc--------
Q psy9489 90 SFSTPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKI-------- 161 (279)
Q Consensus 90 ~~~~~~~~G~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~~~-------- 161 (279)
.+++++++|+|+|||+++||||||+|+|.+.+.++.+++.+||++|++|+++++||..||+|.|.+.++...
T Consensus 20 ya~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~ 99 (241)
T 1ryp_D 20 YALEAVKRGTCAVGVKGKNCVVLGCERRSTLKLQDTRITPSKVSKIDSHVVLSFSGLNADSRILIEKARVEAQSHRLTLE 99 (241)
T ss_dssp HHHHHHTTSCCEEEEECSSCEEEEEECCCSSCCBCTTTSCCSEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCCEEEEEeCCEEEEEEeeccCccCccccCCcCcEEEecCCEEEEEeecHHHHHHHHHHHHHHHHHHHHHHC
Confidence 356788999999999999999999999999999888889999999999999999999999999999988511
Q ss_pred -------------------------ccccceeeEEEEEe--CCcEEEEEcCCCccCceeeecCCCceEEecccEEEEecc
Q psy9489 162 -------------------------TPLTTGTSVLGLVF--NGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGN 214 (279)
Q Consensus 162 -------------------------~pi~~g~tvlgi~~--~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG 214 (279)
+|+..+..+.|++. .++.|+..|+.|++ +..++.+.|+|
T Consensus 100 ~~~~v~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~~~~gp~Ly~idp~G~~--------------~~~~~~aiG~g 165 (241)
T 1ryp_D 100 DPVTVEYLTRYVAGVQQRYTQSGGVRPFGVSTLIAGFDPRDDEPKLYQTEPSGIY--------------SSWSAQTIGRN 165 (241)
T ss_dssp SCCCHHHHHHHHHHHHHHTTSSTTBCCCSEEEEEEECCTTCCSCEEEEECTTSCE--------------EEBSEEEESTT
T ss_pred CCCCHHHHHHHHHHHHHHHccCCCCCCcceeeEEEEEcCCCCCeeEEEECCCCCE--------------EEeeeEEECCC
Confidence 12222233337775 57899999999987 66678999999
Q ss_pred ChhhHHHHHHHHHhhc---ccccccccCCCCCHHHHHHHHH
Q psy9489 215 DYADFQYLNDIVKQKI---LDDDLHNDGFVLKPKSLHSWLT 252 (279)
Q Consensus 215 ~~aD~~~l~~~l~~~~---~~~~~~ee~~~l~~~~la~~is 252 (279)
+ +++..+|++.| +++|+++|+.++..+++.+.+.
T Consensus 166 s----~~a~~~Le~~~~~~~~~ms~eea~~l~~~al~~~~~ 202 (241)
T 1ryp_D 166 S----KTVREFLEKNYDRKEPPATVEECVKLTVRSLLEVVQ 202 (241)
T ss_dssp H----HHHHHHHHTTCCTTSCCCSHHHHHHHHHHHHHHHHC
T ss_pred c----HHHHHHHHHhhhcccCCCCHHHHHHHHHHHHHHHhc
Confidence 9 99999999999 8899999999998888887775
No 31
>1j2p_A Alpha-ring, proteasome alpha subunit; hydrolase; 2.60A {Archaeoglobus fulgidus} SCOP: d.153.1.4 PDB: 1j2q_A*
Probab=99.87 E-value=7e-23 Score=181.01 Aligned_cols=144 Identities=16% Similarity=0.190 Sum_probs=123.0
Q ss_pred CcCcCccCCccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhccc--------
Q psy9489 90 SFSTPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKI-------- 161 (279)
Q Consensus 90 ~~~~~~~~G~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~~~-------- 161 (279)
.+++++++|||+|||+++||||||+|+|.+.+ ++.+++.+||++|++|+++++||..||+|.|.+.++...
T Consensus 26 ya~~av~~Gtt~vgi~~~dgVvlaaD~r~~~~-l~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~ 104 (246)
T 1j2p_A 26 YAREAVKRGATAIGIKCKEGVILIADKRVGSK-LLEKDTIEKIYKIDEHICAATSGLVADARVLIDRARIEAQINRLTYD 104 (246)
T ss_dssp HHHHHHHTSCCEEEEEETTEEEEEEECCCSCT-TBCGGGCCSEEECSSSEEEEEEECHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred hHHHHHHcCCcEEEEEECCEEEEEEeccCCcc-ccccCccCcEEEECCCEEEEEeEccHHHHHHHHHHHHHHHHHHHHhC
Confidence 34668899999999999999999999998865 566899999999999999999999999999999987510
Q ss_pred -------------------------ccccceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccCh
Q psy9489 162 -------------------------TPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDY 216 (279)
Q Consensus 162 -------------------------~pi~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~ 216 (279)
+|+..+..+.|++ +++.|+..|+.|++ ...++.+.|+|+
T Consensus 105 ~~~~v~~la~~l~~~~~~y~~~~~~rp~~v~~lvaG~D-~gp~Ly~idp~G~~--------------~~~~~~aiGsgs- 168 (246)
T 1j2p_A 105 IPITVKELAKKICDFKQQYTQYGGVRPFGVSLLIAGVN-EVPKLYETDPSGAL--------------LEYKATAIGMGR- 168 (246)
T ss_dssp SCCCHHHHHHHHHHHHHHTTSBTTBCCCCEEEEEEEES-SSEEEEEECTTCCE--------------EEBSEEEESTTH-
T ss_pred CCCCHHHHHHHHHHHHHHHhcccCcccccEEEEEEEEC-CCCEEEEECCCceE--------------EeeeEEEECCCc-
Confidence 1222223334888 88999999999987 566889999999
Q ss_pred hhHHHHHHHHHhhcccccccccCCCCCHHHHHHHHHH
Q psy9489 217 ADFQYLNDIVKQKILDDDLHNDGFVLKPKSLHSWLTR 253 (279)
Q Consensus 217 aD~~~l~~~l~~~~~~~~~~ee~~~l~~~~la~~isr 253 (279)
+++..+|++.|+++++++|+.++..+++.+.+.+
T Consensus 169 ---~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~ 202 (246)
T 1j2p_A 169 ---MAVTEFFEKEYRDDLSFDDAMVLGLVAMGLSIES 202 (246)
T ss_dssp ---HHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHTS
T ss_pred ---HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999988888888775
No 32
>1ryp_G 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_F* 1g65_F 1vsy_G 2f16_F* 2fak_F* 2fny_F* 2gpl_F* 3d29_F* 3dy3_F* 3dy4_F* 3e47_F* 3gpj_F* 3gpt_F* 3gpw_F* 3hye_F* 3l5q_L 3mg0_F* 3mg4_F* 3okj_F* 3shj_F* ...
Probab=99.87 E-value=5.3e-23 Score=181.64 Aligned_cols=149 Identities=13% Similarity=0.070 Sum_probs=123.5
Q ss_pred CcCcCccCCccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhcc---------
Q psy9489 90 SFSTPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQK--------- 160 (279)
Q Consensus 90 ~~~~~~~~G~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~~--------- 160 (279)
.+++++++|+|+|||+++||||||+|+|.+.+.++.++ .+||++|++|+++++||..||+|.|.+.++..
T Consensus 22 ya~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~-~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~ 100 (244)
T 1ryp_G 22 YAVKAVENGTTSIGIKCNDGVVFAVEKLITSKLLVPQK-NVKIQVVDRHIGCVYSGLIPDGRHLVNRGREEAASFKKLYK 100 (244)
T ss_dssp HHHHHHHTSCCEEEEEETTEEEEEEEEECCCTTBCTTT-SCCCEEETTTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHCCCCEEEEEECCEEEEEEecccCCCCccccc-cCceEEecCCEEEEEcccHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34678999999999999999999999999988887654 59999999999999999999999999998741
Q ss_pred ------------------------cccccceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccCh
Q psy9489 161 ------------------------ITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDY 216 (279)
Q Consensus 161 ------------------------~~pi~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~ 216 (279)
..|+..+..+.|++.+++.|+..|+.|++ +..++.+.|+|+
T Consensus 101 ~~~~v~~la~~l~~~~~~~t~~~~~rp~~v~~lvaG~D~~gp~Ly~idp~G~~--------------~~~~~~aiG~gs- 165 (244)
T 1ryp_G 101 TPIPIPAFADRLGQYVQAHTLYNSVRPFGVSTIFGGVDKNGAHLYMLEPSGSY--------------WGYKGAATGKGR- 165 (244)
T ss_dssp SCCCHHHHHHHHHHHHHHTTSCTTBCCCCEEEEEEEEETTEEEEEEECTTSCE--------------EEBSEEEESTTH-
T ss_pred CCCCHHHHHHHHHHHHHHHhcccCccCceEEEEEEEEeCCcCEEEEECCCCCE--------------EEeeEEEECCCh-
Confidence 01222223333787667899999999987 667899999999
Q ss_pred hhHHHHHHHHHhh---cccccccccCCCCCHHHHHHHHHHHHhh
Q psy9489 217 ADFQYLNDIVKQK---ILDDDLHNDGFVLKPKSLHSWLTRVLYN 257 (279)
Q Consensus 217 aD~~~l~~~l~~~---~~~~~~~ee~~~l~~~~la~~isr~lys 257 (279)
+++..+|++. |+++|+.+|+.++..+++.+.+.++..+
T Consensus 166 ---~~a~~~Le~~~~~~~~~ms~eea~~la~~al~~~~~~d~~s 206 (244)
T 1ryp_G 166 ---QSAKAELEKLVDHHPEGLSAREAVKQAAKIIYLAHEDNKEK 206 (244)
T ss_dssp ---HHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHGGGGTTS
T ss_pred ---HHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHHHhccCCC
Confidence 9999999997 8888888888888888888777665543
No 33
>2jay_A Proteasome; hydrolase; 1.99A {Mycobacterium tuberculosis} PDB: 3mka_C 3mi0_C* 2fhg_H* 2fhh_H 3krd_C* 3mfe_G 3hfa_H* 3h6i_C 3h6f_C 3hf9_H 3mfe_H
Probab=99.87 E-value=1.2e-22 Score=183.56 Aligned_cols=149 Identities=17% Similarity=0.195 Sum_probs=109.1
Q ss_pred cCcCccCCccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhccc--------c
Q psy9489 91 FSTPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKI--------T 162 (279)
Q Consensus 91 ~~~~~~~G~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~~~--------~ 162 (279)
+++ +.+|||+|||+++||||||+|+|.+.|.++.+++++||++|++|+++++||..||+|.|.+.++... +
T Consensus 51 a~~-v~~GtTiVgi~~kdGVVlAaD~r~t~g~li~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~lr~~~~~y~~~~~~ 129 (291)
T 2jay_A 51 DAQ-LPHGTTIVALKYPGGVVMAGDRRSTQGNMISGRDVRKVYITDDYTATGIAGTAAVAVEFARLYAVELEHYEKLEGV 129 (291)
T ss_dssp --------CCEEEEEETTEEEEEECCC--------CCCCCCEEEEETTEEEEEESCHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred ccc-ccCCcEEEEEEECCEEEEEECCCccCCCeeecCCcccEEEeCCcEEEEEcccHHHHHHHHHHHHHHHHHhhhhcCC
Confidence 444 7899999999999999999999999999999999999999999999999999999999999988511 1
Q ss_pred ------------------------cccceeeEEEEEeCC------cEEEEEcCCCccCceeeecCCCceEEe--cccEEE
Q psy9489 163 ------------------------PLTTGTSVLGLVFNG------GVILAADSAGYYGSMMRFNDCPRIMQI--NKFTIL 210 (279)
Q Consensus 163 ------------------------pi~~g~tvlgi~~~~------gvlia~D~~gs~g~li~~~~~~kI~~i--~~~~~~ 210 (279)
|+..+..+.|++.++ +.|+..|+.|++ + ..++.+
T Consensus 130 ~i~v~~la~~la~~l~~~~~~~~rpf~v~~lvaG~D~~g~~~~~~p~Ly~iDp~G~~--------------~e~~~~~~a 195 (291)
T 2jay_A 130 PLTFAGKINRLAIMVRGNLAAAMQGLLALPLLAGYDIHASDPQSAGRIVSFDAAGGW--------------NIEEEGYQA 195 (291)
T ss_dssp CCCHHHHHHHHHHHHHTCHHHHHHTCCCEEEEEEECTTCSCSTTCEEEEEECTTSCE--------------EECSSSEEE
T ss_pred CCCHHHHHHHHHHHHHHhhhhhccccceeEEEEEEeCCCCcCCCCCEEEEECCCCcE--------------EecCCCEEE
Confidence 111112333776543 689999999976 5 667999
Q ss_pred EeccChhhHHHHHHHHHhhcccccccccCCCCCHHHHHHHHHHHHhhc
Q psy9489 211 GAGNDYADFQYLNDIVKQKILDDDLHNDGFVLKPKSLHSWLTRVLYNR 258 (279)
Q Consensus 211 ~gSG~~aD~~~l~~~l~~~~~~~~~~ee~~~l~~~~la~~isr~lys~ 258 (279)
.|+|+ +++..+|++.|+++++.+|+.++..+++..++.+++++.
T Consensus 196 iGsgs----~~a~~~Le~~~~~~ms~eEAi~la~~aL~~a~~~D~~sg 239 (291)
T 2jay_A 196 VGSGS----LFAKSSMKKLYSQVTDGDSGLRVAVEALYDAADDDSATG 239 (291)
T ss_dssp ESTTH----HHHHHHHHHHGGGCCSHHHHHHHHHHHHHHC--------
T ss_pred EecCH----HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhhCCCCC
Confidence 99999 999999999999999999999999999999999998764
No 34
>1iru_K 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_J* 3une_J 3unf_J* 3unh_J
Probab=99.87 E-value=1.9e-22 Score=172.79 Aligned_cols=142 Identities=13% Similarity=0.099 Sum_probs=123.1
Q ss_pred ccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhccc-----------------
Q psy9489 99 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKI----------------- 161 (279)
Q Consensus 99 ~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~~~----------------- 161 (279)
||+|||+++||||||+|+|.+.|+++.+++.+||++|++|+++++||..||++.+.+.++.+.
T Consensus 2 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a 81 (201)
T 1iru_K 2 EYLIGIQGPDYVLVASDRVAASNIVQMKDDHDKMFKMSEKILLLCVGEAGDTVQFAEYIQKNVQLYKMRNGYELSPTAAA 81 (201)
T ss_dssp CCEEEEECSSEEEEEEECCEEETTEEEESSCCCEEECSSSEEEEEEESTTHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred ceEEEEEeCCEEEEEEcCccccCcEEEccCcceEEEecCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 699999999999999999999999999999999999999999999999999999999887510
Q ss_pred --------------ccccceeeEEEEEe-CCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHH
Q psy9489 162 --------------TPLTTGTSVLGLVF-NGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIV 226 (279)
Q Consensus 162 --------------~pi~~g~tvlgi~~-~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l 226 (279)
.|+..+..+.|++. +++.|+..|+.|++ ...++.+.|+|+ +++..+|
T Consensus 82 ~~~~~~l~~~~~~~~p~~~~~lvaG~D~~~gp~Ly~id~~G~~--------------~~~~~~aiGsgs----~~a~~~L 143 (201)
T 1iru_K 82 NFTRRNLADCLRSRTPYHVNLLLAGYDEHEGPALYYMDYLAAL--------------AKAPFAAHGYGA----FLTLSIL 143 (201)
T ss_dssp HHHHHHHHHHHTSSSCCCEEEEEEEEETTTEEEEEEECTTCCE--------------EECSEEEESHHH----HHHHHHH
T ss_pred HHHHHHHHHHHhcCCCccEEEEEEEEeCCCCeEEEEECCCcCe--------------EECCEEEECCcH----HHHHHHH
Confidence 02222223337775 46899999999987 667899999999 9999999
Q ss_pred HhhcccccccccCCCCCHHHHHHHHHHHHhhc
Q psy9489 227 KQKILDDDLHNDGFVLKPKSLHSWLTRVLYNR 258 (279)
Q Consensus 227 ~~~~~~~~~~ee~~~l~~~~la~~isr~lys~ 258 (279)
++.|+++++++|+.++..+++.+++.|+.++.
T Consensus 144 e~~~~~~~s~eea~~l~~~al~~a~~rd~~sg 175 (201)
T 1iru_K 144 DRYYTPTISRERAVELLRKCLEELQKRFILNL 175 (201)
T ss_dssp HHHCCTTCCHHHHHHHHHHHHHHHHHTBCBCC
T ss_pred HhcccCCCCHHHHHHHHHHHHHHHHhhccccC
Confidence 99999999999999999999999998887764
No 35
>1iru_I 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_H* 3une_H
Probab=99.87 E-value=4.1e-22 Score=174.95 Aligned_cols=142 Identities=15% Similarity=0.183 Sum_probs=124.1
Q ss_pred ccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhccc--------cccc-----
Q psy9489 99 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKI--------TPLT----- 165 (279)
Q Consensus 99 ~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~~~--------~pi~----- 165 (279)
||+|||+++||||||+|+|.+.|.++.+++.+||++|++|+++++||..||+|.+.+.++.+. ++++
T Consensus 1 TTivgi~~~dgVVlaaD~r~t~g~~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (234)
T 1iru_I 1 TTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLISSNLELHSLSTGRLPRVVTAN 80 (234)
T ss_dssp CCEEEEEETTEEEEEECCCEESSSBEEESSCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHCSCCCHHHHH
T ss_pred CeEEEEEeCCEEEEEEcCCcccCceeccCcccceEEecCCEEEEecCcHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 699999999999999999999999999999999999999999999999999999999998521 1111
Q ss_pred -------------ceeeE--EEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhc
Q psy9489 166 -------------TGTSV--LGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKI 230 (279)
Q Consensus 166 -------------~g~tv--lgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~ 230 (279)
.+..+ .|++.+++.|+..|+.|++ ...++.+.|+|+ +.+..+|++.|
T Consensus 81 ~~l~~~l~~~~~~~~v~llvaG~D~~gp~Ly~idp~G~~--------------~~~~~~aiGsgs----~~a~~~Le~~~ 142 (234)
T 1iru_I 81 RMLKQMLFRYRGYIGAALVLGGVDVTGPHLYSIYPHGST--------------DKLPYVTMGSGS----LAAMAVFEDKF 142 (234)
T ss_dssp HHHHHHHHHTTTCSCEEEEEEEECSSCEEEEEECTTSCE--------------EECSEEEESTTH----HHHHHHHHHSC
T ss_pred HHHHHHHHhcCCCCceeEEEEEEcCCCCEEEEECCCCCE--------------EecCEEEECCch----HHHHHHHHHhc
Confidence 23332 3777678899999999986 667899999999 99999999999
Q ss_pred ccccccccCCCCCHHHHHHHHHHHHhhc
Q psy9489 231 LDDDLHNDGFVLKPKSLHSWLTRVLYNR 258 (279)
Q Consensus 231 ~~~~~~ee~~~l~~~~la~~isr~lys~ 258 (279)
+++|+++|+.++..+++...+.+++++.
T Consensus 143 ~~~ms~eeA~~la~~al~~a~~~d~~sg 170 (234)
T 1iru_I 143 RPDMEEEEAKNLVSEAIAAGIFNDLGSG 170 (234)
T ss_dssp CTTCCHHHHHTHHHHHHHHHHHHCTTCC
T ss_pred cCCCCHHHHHHHHHHHHHHHHHhcccCC
Confidence 9999999999999999999999887764
No 36
>1ryp_K 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_K 1g0u_J* 1jd2_J* 1g65_J 1vsy_K 1z7q_K 2f16_J* 2fak_J* 2fny_J* 2gpl_J* 2zcy_J* 3bdm_J* 3d29_J* 3dy3_J* 3dy4_J* 3e47_J* 3gpj_J* 3gpt_J* 3gpw_J* 3hye_J* ...
Probab=99.87 E-value=2.2e-22 Score=172.02 Aligned_cols=142 Identities=15% Similarity=0.148 Sum_probs=123.8
Q ss_pred ccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhccc-----------------
Q psy9489 99 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKI----------------- 161 (279)
Q Consensus 99 ~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~~~----------------- 161 (279)
||+|||+++||||||+|+|.+.+.++.+++.+||++|++|+++++||..||+|.|.+.++...
T Consensus 2 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 81 (198)
T 1ryp_K 2 DIILGIRVQDSVILASSKAVTRGISVLKDSDDKTRQLSPHTLMSFAGEAGDTVQFAEYIQANIQLYSIREDYELSPQAVS 81 (198)
T ss_dssp CCEEEEECSSCEEEEEECCEEETTEEEESCCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred ceEEEEEECCEEEEEECCCcccCCEEEecCCCceEEeCCCEEEEeccCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 699999999999999999999999999999999999999999999999999999999988410
Q ss_pred --------------ccccceeeEEEEEe--CCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHH
Q psy9489 162 --------------TPLTTGTSVLGLVF--NGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDI 225 (279)
Q Consensus 162 --------------~pi~~g~tvlgi~~--~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~ 225 (279)
.|+..+..+.|++. +++.|+..|+.|++ ...++.+.|+|+ +++..+
T Consensus 82 ~~l~~~l~~~~~~r~p~~v~~lvaG~D~~~~~p~Ly~idp~G~~--------------~~~~~~aiG~g~----~~a~~~ 143 (198)
T 1ryp_K 82 SFVRQELAKSIRSRRPYQVNVLIGGYDKKKNKPELYQIDYLGTK--------------VELPYGAHGYSG----FYTFSL 143 (198)
T ss_dssp HHHHHHHHHHTTSSSCCCEEEEEEEEETTTTEEEEEEECTTCCE--------------EECSEEECTTHH----HHHHHH
T ss_pred HHHHHHHHHhcccCCCceEEEEEEEEeCCCCCcEEEEECCCCCE--------------EECCEEEEcccH----HHHHHH
Confidence 13222233348874 57899999999987 667899999999 999999
Q ss_pred HHhhcccccccccCCCCCHHHHHHHHHHHHhhc
Q psy9489 226 VKQKILDDDLHNDGFVLKPKSLHSWLTRVLYNR 258 (279)
Q Consensus 226 l~~~~~~~~~~ee~~~l~~~~la~~isr~lys~ 258 (279)
|++.|+++++++|+.++..+++.+.+.++.++.
T Consensus 144 Le~~~~~~~s~eea~~l~~~al~~~~~~d~~s~ 176 (198)
T 1ryp_K 144 LDHHYRPDMTTEEGLDLLKLCVQELEKRMPMDF 176 (198)
T ss_dssp HHHHCCTTCCHHHHHHHHHHHHHHHHHHCSBCC
T ss_pred HHhhcCCCCCHHHHHHHHHHHHHHHHHhCccCC
Confidence 999999999999999999999999998887764
No 37
>3nzj_F Proteasome component C1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 1z7q_G* 3nzw_F* 3nzx_F* 3un4_F* 3un8_F* 4b4t_G 4g4s_G* 3bdm_F* 1fnt_G* 2zcy_F*
Probab=99.86 E-value=1.1e-22 Score=183.73 Aligned_cols=146 Identities=13% Similarity=0.071 Sum_probs=123.1
Q ss_pred CcCcCccCCccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhccc--------
Q psy9489 90 SFSTPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKI-------- 161 (279)
Q Consensus 90 ~~~~~~~~G~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~~~-------- 161 (279)
++++++++|+|+|||+++||||||+|+|.+.+.++.+ +.+||++|++|+++++||+.+|+|.|.+.++...
T Consensus 26 YA~kAv~~GtT~Vgik~kdGVVlAaD~r~t~gl~~~~-~~~KI~~I~d~i~~~~aG~~aD~~~l~~~lr~e~~~y~~~~~ 104 (288)
T 3nzj_F 26 YAVKAVENGTTSIGIKCNDGVVFAVEKLITSKLLVPQ-KNVKIQVVDRHIGCVYSGLIPDGRHLVNRGREEAASFKKLYK 104 (288)
T ss_dssp HHHHHHHTSCCEEEEEETTEEEEEEEEEECCTTBCTT-CSCCCEEETTTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHhcCCcEEEEEECCEEEEEEcCCcccCCcccc-ccceEEEEcCCEEEEecCcHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4567999999999999999999999999998877654 7799999999999999999999999999998511
Q ss_pred -------------------------ccccceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccCh
Q psy9489 162 -------------------------TPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDY 216 (279)
Q Consensus 162 -------------------------~pi~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~ 216 (279)
+|+..+..+.|++.+++.|+..|+.|++ ...+++++|+|+
T Consensus 105 ~~i~v~~lA~~l~~~l~~yt~~~~~rP~gv~~lvaG~D~~Gp~Ly~iDp~G~~--------------~~~~~~aiGsgs- 169 (288)
T 3nzj_F 105 TPIPIPAFADRLGQYVQAHTLYNSVRPFGVSTIFGGVDKNGAHLYMLEPSGSY--------------WGYKGAATGKGR- 169 (288)
T ss_dssp SCCCHHHHHHHHHHHHHHTTSCTTBCCCCEEEEEEEEETTEEEEEEECTTSCE--------------EEBSEEEESTTH-
T ss_pred CcCCHHHHHHHHHHHHHHHHHhccCCCceEEEEEEEEeCCCCEEEEECCCCCE--------------EEcCEEEEcCcH-
Confidence 1322233344888778999999999987 667899999999
Q ss_pred hhHHHHHHHHHhh---cccccccccCCCCCHHHHHHHHHHH
Q psy9489 217 ADFQYLNDIVKQK---ILDDDLHNDGFVLKPKSLHSWLTRV 254 (279)
Q Consensus 217 aD~~~l~~~l~~~---~~~~~~~ee~~~l~~~~la~~isr~ 254 (279)
+++..+|++. |+++|+++|+.++..++|...+.++
T Consensus 170 ---~~a~~~Lek~~~~~~~~ms~eEAv~la~~al~~a~~~~ 207 (288)
T 3nzj_F 170 ---QSAKAELEKLVDHHPEGLSAREAVKQAAKIIYLAHEDN 207 (288)
T ss_dssp ---HHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHGGGG
T ss_pred ---HHHHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHhcc
Confidence 9999999999 8888888888888888887776653
No 38
>1ryp_B 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_B 1g0u_A* 1jd2_A* 1g65_A 1z7q_B 2f16_A* 2fak_A* 2fny_A* 2gpl_A* 2zcy_A* 3bdm_A* 3d29_A* 3dy3_A* 3dy4_A* 3e47_A* 3gpj_A* 3gpt_A* 3gpw_A* 3hye_A* 3mg0_A* ...
Probab=99.86 E-value=1.6e-22 Score=179.21 Aligned_cols=145 Identities=14% Similarity=0.130 Sum_probs=122.2
Q ss_pred CcCcCccCCccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhccc--------
Q psy9489 90 SFSTPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKI-------- 161 (279)
Q Consensus 90 ~~~~~~~~G~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~~~-------- 161 (279)
.+++++++|||+|||+++||||||+|+|.+ +.++.+++.+||++|++|+++++||..||+|.+.+.++...
T Consensus 23 yA~~av~~Gtt~vgi~~~dgVvlaaD~r~~-~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~ 101 (250)
T 1ryp_B 23 YALTAVKQGVTSLGIKATNGVVIATEKKSS-SPLAMSETLSKVSLLTPDIGAVYSGMGPDYRVLVDKSRKVAHTSYKRIY 101 (250)
T ss_dssp HHHHHHHTSCCEEEEEETTEEEEEEECCCS-CSSBCGGGCCSSEEEETTEEEEEEECHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred hHHHHHHcCCcEEEEEECCEEEEEEeccCC-CccccCcccCceEEECCCEEEEeeeCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356788999999999999999999999987 89999999999999999999999999999999998876311
Q ss_pred --------------------------ccccceeeEEEEEe-CCcEEEEEcCCCccCceeeecCCCceEEecccEEEEecc
Q psy9489 162 --------------------------TPLTTGTSVLGLVF-NGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGN 214 (279)
Q Consensus 162 --------------------------~pi~~g~tvlgi~~-~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG 214 (279)
+|+..+..+.|++. .++.|+..|+.|++ +..++.+.|+|
T Consensus 102 ~~~~~~~~l~~~~a~~~~~~~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~--------------~~~~~~aiGsg 167 (250)
T 1ryp_B 102 GEYPPTKLLVSEVAKIMQEATQSGGVRPFGVSLLIAGHDEFNGFSLYQVDPSGSY--------------FPWKATAIGKG 167 (250)
T ss_dssp SSCCCHHHHHHHHHHHHHHTTTSBTBCCCCEEEEEEEEETTTEEEEEEECTTSCE--------------EEBSEEEESTT
T ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCcccceEEEEEEEEcCCCCcEEEEECCCCCE--------------EeeceeEecCc
Confidence 12112222337765 46899999999987 66789999999
Q ss_pred ChhhHHHHHHHHHhhcccccccccCCCCCHHHHHHHHHH
Q psy9489 215 DYADFQYLNDIVKQKILDDDLHNDGFVLKPKSLHSWLTR 253 (279)
Q Consensus 215 ~~aD~~~l~~~l~~~~~~~~~~ee~~~l~~~~la~~isr 253 (279)
+ +++..+|++.|+++|+.+|+.++..+++.+.+.+
T Consensus 168 s----~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~ 202 (250)
T 1ryp_B 168 S----VAAKTFLEKRWNDELELEDAIHIALLTLKESVEG 202 (250)
T ss_dssp H----HHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHCCS
T ss_pred c----HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhcc
Confidence 9 9999999999999999998888888888777664
No 39
>1g3k_A ATP-dependent protease HSLV; hydrolase; 1.90A {Haemophilus influenzae} SCOP: d.153.1.4 PDB: 1g3i_G 1jjw_A 1kyi_G* 1ofh_G* 1ofi_G* 1e94_A* 1g4a_B* 1g4b_M 1hqy_A* 1ht1_C* 1ht2_A* 1ned_A
Probab=99.86 E-value=1e-21 Score=164.81 Aligned_cols=137 Identities=13% Similarity=0.136 Sum_probs=117.8
Q ss_pred ccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEe-cCceEeeecCcccccccchhhhhccc----------------
Q psy9489 99 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQI-NKFTILGAGNDYADFQYLNDIVKQKI---------------- 161 (279)
Q Consensus 99 ~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i-~~~~~~~~sG~~aD~~~l~~~l~~~~---------------- 161 (279)
||+|||+++||||||+|+|.+.|.++.+++.+||++| ++|+++++||+.||++.|.+.++.+.
T Consensus 1 tT~vgi~~~dgVvlaaD~r~t~g~~i~~~~~~Ki~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 80 (174)
T 1g3k_A 1 TTIVSVRRNGQVVVGGDGQVSLGNTVMKGNARKVRRLYNGKVLAGFAGGTADAFTLFELFERKLEMHQGHLLKSAVELAK 80 (174)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEETTTTEEEEEESCHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred CeEEEEEECCEEEEEECCCCccCCeeEeCCCCcEEEECCCCEEEEeCccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 6999999999999999999999999999999999999 99999999999999999999988521
Q ss_pred -------ccccceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEec---ccEEEEeccChhhHHHHHHHHHhhcc
Q psy9489 162 -------TPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQIN---KFTILGAGNDYADFQYLNDIVKQKIL 231 (279)
Q Consensus 162 -------~pi~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~---~~~~~~gSG~~aD~~~l~~~l~~~~~ 231 (279)
.+ ..+..+++.+ ++.|+..|+.|++ .. +++.+.|||+ +++...||+.|+
T Consensus 81 ~~~~~~~~r-~~~~~l~g~d--~p~Ly~~d~~G~~--------------~~~~~~~~~a~Gsgs----~~a~~~le~~~~ 139 (174)
T 1g3k_A 81 DWRTDRALR-KLEAMLIVAD--EKESLIITGIGDV--------------VQPEEDQILAIGSGG----NYALSAARALVE 139 (174)
T ss_dssp HHHHSTTGG-GCCCEEEEEC--SSCEEEEETTTEE--------------ECCCTTCEEEESTTH----HHHHHHHHHHHH
T ss_pred HHHhccCcC-cceEEEEEEC--CCEEEEEcCCCcE--------------EecCCCcEEEEcccH----HHHHHHHHHhcc
Confidence 11 2455566664 7899999999987 44 3499999999 999999999999
Q ss_pred -cccccccCCCCCHHHHHHHHHHHHhhcc
Q psy9489 232 -DDDLHNDGFVLKPKSLHSWLTRVLYNRR 259 (279)
Q Consensus 232 -~~~~~ee~~~l~~~~la~~isr~lys~r 259 (279)
++|+.+ ++..+++..++.|+.++..
T Consensus 140 ~~~mt~~---~l~~~al~~a~~rd~~sg~ 165 (174)
T 1g3k_A 140 NTELSAH---EIVEKSLRIAGDICVFTNT 165 (174)
T ss_dssp HCCCCHH---HHHHHHHHHHHHHCTTCCS
T ss_pred cCCCCHH---HHHHHHHHHHHHhccccCC
Confidence 888754 6888899999998888754
No 40
>1iru_G 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_F* 3une_F 3unf_F* 3unh_F
Probab=99.86 E-value=8.6e-23 Score=181.33 Aligned_cols=144 Identities=11% Similarity=0.119 Sum_probs=119.3
Q ss_pred CcCcCccCCccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhcc---------
Q psy9489 90 SFSTPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQK--------- 160 (279)
Q Consensus 90 ~~~~~~~~G~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~~--------- 160 (279)
.+++++++|+|+|||+++||||||+|+|.+.+.++ .++.+||++|++|+++++||..||+|.|.+.++..
T Consensus 25 yA~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~-~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~ 103 (254)
T 1iru_G 25 YAMKAVENSSTAIGIRCKDGVVFGVEKLVLSKLYE-EGSNKRLFNVDRHVGMAVAGLLADARSLADIAREEASNFRSNFG 103 (254)
T ss_dssp HHHHHHHTSCCEEEEECSSBEEEEEEEECSCTTBC-TTTTCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred hHHHHHhcCCCEEEEEECCEEEEEEecccCCCCcC-cCcCCcEEEECCCEEEEEecChHHHHHHHHHHHHHHHHHHHHhC
Confidence 35678999999999999999999999999988887 48999999999999999999999999999998851
Q ss_pred ------------------------cccccceeeEEEEE-eCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccC
Q psy9489 161 ------------------------ITPLTTGTSVLGLV-FNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGND 215 (279)
Q Consensus 161 ------------------------~~pi~~g~tvlgi~-~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~ 215 (279)
.+|+..+..+.|++ ..++.|+..|+.|++ +..++.+.|+|+
T Consensus 104 ~~~~v~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~~~gp~Ly~idp~G~~--------------~~~~~~aiGsgs 169 (254)
T 1iru_G 104 YNIPLKHLADRVAMYVHAYTLYSAVRPFGCSFMLGSYSVNDGAQLYMIDPSGVS--------------YGYWGCAIGKAR 169 (254)
T ss_dssp SCCCHHHHHHHHHHHHHHTTSBSSBCCCSEEEEEEEEETTTEEEEEEECTTCCE--------------EEBSEEEESTTH
T ss_pred CCCCHHHHHHHHHHHHHHhccccccccceEEEEEEEEeCCCCcEEEEEcCCCCE--------------EeeeeEEecCcc
Confidence 01222223334887 567899999999987 667899999999
Q ss_pred hhhHHHHHHHHHhhcccccccccCCCCCHHHHHHHHH
Q psy9489 216 YADFQYLNDIVKQKILDDDLHNDGFVLKPKSLHSWLT 252 (279)
Q Consensus 216 ~aD~~~l~~~l~~~~~~~~~~ee~~~l~~~~la~~is 252 (279)
+++..+|++.|+++|+++|+.++..++|...+.
T Consensus 170 ----~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~ 202 (254)
T 1iru_G 170 ----QAAKTEIEKLQMKEMTCRDIVKEVAKIIYIVHD 202 (254)
T ss_dssp ----HHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHSC
T ss_pred ----HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHh
Confidence 999999999988777777777777666665543
No 41
>1q5q_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4
Probab=99.85 E-value=6.7e-22 Score=173.61 Aligned_cols=142 Identities=17% Similarity=0.225 Sum_probs=122.9
Q ss_pred ccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhccc--------cccc-----
Q psy9489 99 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKI--------TPLT----- 165 (279)
Q Consensus 99 ~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~~~--------~pi~----- 165 (279)
||+|||+++||||||+|+|.+.|+++.+++.+||++|++++++++||..||++.|.+.++... ++++
T Consensus 1 tT~vgi~~~dgVVlaaD~r~~~g~l~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (235)
T 1q5q_H 1 TTIVALTYKGGVLLAGDRRATQGNLIASRDVEKVYVTDEYSAAGIAGTAGIAIELVRLFAVELEHYEKIEGVPLTFDGKA 80 (235)
T ss_dssp CCEEEEECSSCEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CeEEEEEECCEEEEEECCCCCcCCEEecCCcCcEEEeCCcEEEEcCCcHHHHHHHHHHHHHHHHHhHHHhCCCCCHHHHH
Confidence 699999999999999999999999999999999999999999999999999999999988511 1110
Q ss_pred -----------------ceee--EEEEEeC-C-----cEEEEEcCCCccCceeeecCCCceEEecc--cEEEEeccChhh
Q psy9489 166 -----------------TGTS--VLGLVFN-G-----GVILAADSAGYYGSMMRFNDCPRIMQINK--FTILGAGNDYAD 218 (279)
Q Consensus 166 -----------------~g~t--vlgi~~~-~-----gvlia~D~~gs~g~li~~~~~~kI~~i~~--~~~~~gSG~~aD 218 (279)
.+.. +.|++.+ + +.|+..|+.|++ +.. ++.+.|+|+
T Consensus 81 ~~l~~~~~~~~~~~~rp~~v~~lvaG~D~~~g~~~~~p~Ly~idp~G~~--------------~~~~~~~~aiGsgs--- 143 (235)
T 1q5q_H 81 NRLASMVRGNLGAAMQGLAVVPLLVGYDLDADDESRAGRIVSYDVVGGR--------------YEERAGYHAVGSGS--- 143 (235)
T ss_dssp HHHHHHHHTTHHHHTTTCCEEEEEEEECTTCSSTTSCEEEEEECTTSCE--------------EECCSSEEEESTTH---
T ss_pred HHHHHHHHHHHHhhhcccceEEEEEEEECCCCccCCCCEEEEECCCCce--------------EEeCCCeEEECCCH---
Confidence 1332 2377655 4 689999999976 555 899999999
Q ss_pred HHHHHHHHHhhcccccccccCCCCCHHHHHHHHHHHHhhc
Q psy9489 219 FQYLNDIVKQKILDDDLHNDGFVLKPKSLHSWLTRVLYNR 258 (279)
Q Consensus 219 ~~~l~~~l~~~~~~~~~~ee~~~l~~~~la~~isr~lys~ 258 (279)
+++..+|++.|+++|+++|+.++..+++...+.++.++.
T Consensus 144 -~~a~~~Le~~~~~~ms~eeA~~la~~al~~a~~~d~~sg 182 (235)
T 1q5q_H 144 -LFAKSALKKIYSPDSDEETALRAAIESLYDAADDDSATG 182 (235)
T ss_dssp -HHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHHHCTTTC
T ss_pred -HHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHhhCcccC
Confidence 999999999999999999999999999999999988864
No 42
>1iru_D 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unf_C* 3une_C* 3unh_C 3unb_C*
Probab=99.85 E-value=1.2e-22 Score=179.69 Aligned_cols=144 Identities=11% Similarity=0.121 Sum_probs=120.9
Q ss_pred CcCcCccCCccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhccc--------
Q psy9489 90 SFSTPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKI-------- 161 (279)
Q Consensus 90 ~~~~~~~~G~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~~~-------- 161 (279)
++++++++|+|+|||+++||||||+|+|.+.+ ++.+++.+||++|++|+++++||..||+|.|.+.++...
T Consensus 21 YA~~av~~Gtt~vgi~~~dgVvlaaD~r~~~~-l~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~ 99 (248)
T 1iru_D 21 YAQEAVKKGSTAVGVRGRDIVVLGVEKKSVAK-LQDERTVRKICALDDNVCMAFAGLTADARIVINRARVECQSHRLTVE 99 (248)
T ss_dssp HHHHHHHTSCCEEEECCSSEEEEEECCCCCCS-SSCGGGGCSEEESSSSCEEEEEECHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHcCCCEEEEEeCCEEEEEEeeccccc-CccCCCCCcEEEEcCCEEEEEeecHHHHHHHHHHHHHHHHHHHHHHC
Confidence 45678999999999999999999999998877 678899999999999999999999999999999988511
Q ss_pred -------------------------ccccceeeEEEEE-eCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccC
Q psy9489 162 -------------------------TPLTTGTSVLGLV-FNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGND 215 (279)
Q Consensus 162 -------------------------~pi~~g~tvlgi~-~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~ 215 (279)
+|+..+..+.|++ ..++.|+..|+.|++ +..++.+.|+|+
T Consensus 100 ~~~~v~~la~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~--------------~~~~~~aiG~gs 165 (248)
T 1iru_D 100 DPVTVEYITRYIASLKQRYTQSNGRRPFGISALIVGFDFDGTPRLYQTDPSGTY--------------HAWKANAIGRGA 165 (248)
T ss_dssp SCCCHHHHHHHHHHHHHHTTSBTTBCCCCEEEEEEEECSSSCEEEEEECTTSCE--------------EEBSEEEESTTH
T ss_pred CCCCHHHHHHHHHHHHHHHhccCCcccccEEEEEEEEeCCCCcEEEEEcCCCcE--------------EEeeEEEECCCc
Confidence 1322223334787 567899999999987 667899999999
Q ss_pred hhhHHHHHHHHHhhccccc--ccccCCCCCHHHHHHHHH
Q psy9489 216 YADFQYLNDIVKQKILDDD--LHNDGFVLKPKSLHSWLT 252 (279)
Q Consensus 216 ~aD~~~l~~~l~~~~~~~~--~~ee~~~l~~~~la~~is 252 (279)
+++..+|++.|+++| +++|+.++..++|...+.
T Consensus 166 ----~~a~~~Le~~~~~~m~~s~eea~~la~~al~~~~~ 200 (248)
T 1iru_D 166 ----KSVREFLEKNYTDEAIETDDLTIKLVIKALLEVVQ 200 (248)
T ss_dssp ----HHHHHHHTTTCCSSTTCSHHHHHHHHHHHHHTTSC
T ss_pred ----HHHHHHHHHhhcccccCCHHHHHHHHHHHHHHHHc
Confidence 999999999999888 888777777777766554
No 43
>3unf_N Proteasome subunit beta type-9; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_N
Probab=99.85 E-value=9e-22 Score=168.31 Aligned_cols=141 Identities=16% Similarity=0.215 Sum_probs=117.8
Q ss_pred ccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhccc-----------------
Q psy9489 99 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKI----------------- 161 (279)
Q Consensus 99 ~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~~~----------------- 161 (279)
||+|||+++||||||+|+|.+.|+++.+++.+||++|++|+++++||..||+|.|.+.++.+.
T Consensus 1 TT~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a 80 (199)
T 3unf_N 1 TTIMAVEFDGGVVVGSDSRVSAGTAVVNRVFDKLSPLHQRIFCALSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAA 80 (199)
T ss_dssp CEEEEEECSSCEEEEECCCEEETTEEEESSCCCEEEEETTEEEEECSCHHHHHHHHHHHHHHHHHHHHHTTSCCCHHHHH
T ss_pred CeEEEEEeCCeEEEEECCcccCCceeEccccCceEEcCCCEEEEecccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 799999999999999999999999999999999999999999999999999999999988511
Q ss_pred -----------ccccceeeEEEEEe-CCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhh
Q psy9489 162 -----------TPLTTGTSVLGLVF-NGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQK 229 (279)
Q Consensus 162 -----------~pi~~g~tvlgi~~-~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~ 229 (279)
.|+..+..+.|++. .++.|+. +.|++ .....+++.|+|+ +++..+|++.
T Consensus 81 ~~l~~~l~~~~~p~~v~~lvaG~D~~~~p~ly~--p~G~~-------------~~~~~~~~~Gsgs----~~a~~~Le~~ 141 (199)
T 3unf_N 81 NVVKNISYKYREDLLAHLIVAGWDQREGGQVYG--TMGGM-------------LIRQPFTIGGSGS----SYIYGYVDAA 141 (199)
T ss_dssp HHHHHHHHHTTTTCCCCEEEEEEETTTEEEEEE--CGGGC-------------CEECSEEEEEGGG----GGGHHHHHHH
T ss_pred HHHHHHHHhcCCCceEEEEEEEEeCCCCcEEEE--ECCCc-------------eecCCEEEEccCH----HHHHHHHHhh
Confidence 12222233337765 3456666 66654 1345678889999 9999999999
Q ss_pred cccccccccCCCCCHHHHHHHHHHHHhhc
Q psy9489 230 ILDDDLHNDGFVLKPKSLHSWLTRVLYNR 258 (279)
Q Consensus 230 ~~~~~~~ee~~~l~~~~la~~isr~lys~ 258 (279)
|+++|+++|+.++..+++...+.++.++.
T Consensus 142 ~~~~ms~eea~~la~~al~~~~~~d~~sg 170 (199)
T 3unf_N 142 YKPGMTPEECRRFTTNAITLAMNRDGSSG 170 (199)
T ss_dssp CCSSCCHHHHHHHHHHHHHHHHHHCTTCC
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHhccccC
Confidence 99999999999999999999999988764
No 44
>1ryp_F 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_E* 1g65_E 2f16_E* 2fak_E* 2fny_E* 2gpl_E* 3d29_E* 3dy3_E* 3dy4_E* 3e47_E* 3gpj_E* 3gpt_E* 3gpw_E* 3hye_E* 3mg0_E* 3mg4_E* 3oeu_E* 3oev_E* 3okj_E* 3shj_E* ...
Probab=99.85 E-value=1.8e-22 Score=176.94 Aligned_cols=141 Identities=13% Similarity=0.126 Sum_probs=113.0
Q ss_pred CcCcCccCCccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhccc--------
Q psy9489 90 SFSTPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKI-------- 161 (279)
Q Consensus 90 ~~~~~~~~G~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~~~-------- 161 (279)
.+++++++|||+|||+++||||||+|+|.+.+.. ++.+||++|++|+++++||..||+|.|.+.++...
T Consensus 23 yA~~av~~Gtt~vgi~~~dgVvlaaD~r~~~~l~---~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~ 99 (233)
T 1ryp_F 23 YALEAIKQGSVTVGLRSNTHAVLVALKRNADELS---SYQKKIIKCDEHMGLSLAGLAPDARVLSNYLRQQCNYSSLVFN 99 (233)
T ss_dssp HHHHHHHTSCCEEEEECSSEEEEEEECCCSSTTB---CCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCCEEEEEcCCEEEEEEEeccccccc---cccCcEEEEcCCEEEEEEechHHHHHHHHHHHHHHHHHHHHHC
Confidence 4567889999999999999999999999887732 58899999999999999999999999999988510
Q ss_pred -------------------------ccccceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccCh
Q psy9489 162 -------------------------TPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDY 216 (279)
Q Consensus 162 -------------------------~pi~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~ 216 (279)
+|+..+..+.|++.+++.|+..|+.|++ +..++.+.|+|+
T Consensus 100 ~~~~v~~la~~l~~~~~~~t~~~~~rp~~v~~lvaG~D~~gp~Ly~idp~G~~--------------~~~~~~aiG~gs- 164 (233)
T 1ryp_F 100 RKLAVERAGHLLCDKAQKNTQSYGGRPYGVGLLIIGYDKSGAHLLEFQPSGNV--------------TELYGTAIGARS- 164 (233)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHBTTCCCCCEEEEEEEEETTEEEEEEECTTSCE--------------EEESEEEESTTH-
T ss_pred CCCCHHHHHHHHHHHHHHHhcccCCcCcceEEEEEEEeCCcCEEEEECCCCCe--------------eeeeEEEECCCc-
Confidence 1222223334887778999999999987 666899999999
Q ss_pred hhHHHHHHHHHhhccc--cc--ccccCCCCCHHHHHHHH
Q psy9489 217 ADFQYLNDIVKQKILD--DD--LHNDGFVLKPKSLHSWL 251 (279)
Q Consensus 217 aD~~~l~~~l~~~~~~--~~--~~ee~~~l~~~~la~~i 251 (279)
+++..+|++.|++ +| +++|+.++..+++.+.+
T Consensus 165 ---~~a~~~Le~~~~~~~~m~~s~eea~~~a~~al~~~~ 200 (233)
T 1ryp_F 165 ---QGAKTYLERTLDTFIKIDGNPDELIKAGVEAISQSL 200 (233)
T ss_dssp ---HHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHTTSC
T ss_pred ---HHHHHHHHHHhccccccCCCHHHHHHHHHHHHHHHh
Confidence 9999999999997 66 66655555544444443
No 45
>1m4y_A ATP-dependent protease HSLV; N-terminal catalytic threonine residue, hydrolase; 2.10A {Thermotoga maritima} SCOP: d.153.1.4
Probab=99.85 E-value=2e-21 Score=162.57 Aligned_cols=136 Identities=16% Similarity=0.155 Sum_probs=116.8
Q ss_pred ccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEe-cCceEeeecCcccccccchhhhhcccc---------------
Q psy9489 99 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQI-NKFTILGAGNDYADFQYLNDIVKQKIT--------------- 162 (279)
Q Consensus 99 ~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i-~~~~~~~~sG~~aD~~~l~~~l~~~~~--------------- 162 (279)
||+|||+++||||||+|+|.+.|.++.+++.+||++| ++|+++++||..||+|.|.+.++.+.+
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~Ki~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 80 (171)
T 1m4y_A 1 TTILVVRRNGQTVMGGDGQVTFGSTVLKGNARKVRKLGEGKVLAGFAGSVADAMTLFDRFEAKLREWGGNLTKAAVELAK 80 (171)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEETTTTEEEEEESCHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred CeEEEEEECCEEEEEECCCcccCCEEEeCCcceEEEeCCCCEEEEeCccHHHHHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 6999999999999999999999999999999999999 999999999999999999999986221
Q ss_pred --------cccceeeEE-EEEeCCcEEEEEcCCCccCceeeecCCCceEEeccc--EEEEeccChhhHHHHHHHHHhhcc
Q psy9489 163 --------PLTTGTSVL-GLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKF--TILGAGNDYADFQYLNDIVKQKIL 231 (279)
Q Consensus 163 --------pi~~g~tvl-gi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~--~~~~gSG~~aD~~~l~~~l~~~~~ 231 (279)
| ..+..+| | +++.|+..|+.|++ +..+ +.+.|+|+ +++..+||+.|+
T Consensus 81 ~~~~~~~~~-~~~~~~lv~---D~p~Ly~~d~~G~~--------------~~~~~~~~a~Gsgs----~~a~~~le~~~~ 138 (171)
T 1m4y_A 81 DWRTDRVLR-RLEALLLVA---DKENIFIISGNGEV--------------IQPDDDAAAIGSGG----PYALAAAKALLR 138 (171)
T ss_dssp HHHHCTTGG-GCCCEEEEE---CSSCEEEECTTSCE--------------ECCSSSEEEESTTH----HHHHHHHHHHHH
T ss_pred HHHHhCCCC-ceEEEEEEE---cCCEEEEECCCCCE--------------EecCCCEEEECCcH----HHHHHHHHHhcc
Confidence 1 1344444 5 48899999999987 5544 99999999 999999999999
Q ss_pred -cccccccCCCCCHHHHHHHHHHHHhhcc
Q psy9489 232 -DDDLHNDGFVLKPKSLHSWLTRVLYNRR 259 (279)
Q Consensus 232 -~~~~~ee~~~l~~~~la~~isr~lys~r 259 (279)
++|+. .++..+++..++.|+.++..
T Consensus 139 ~~~ms~---~~l~~~al~~a~~rd~~sg~ 164 (171)
T 1m4y_A 139 NTDLSA---REIVEKAMTIAGEICIYTNQ 164 (171)
T ss_dssp HCCCCH---HHHHHHHHHHHHHHCTTCCS
T ss_pred cCCCCH---HHHHHHHHHHHHHhCcccCC
Confidence 78876 56888889999988888753
No 46
>1iru_F 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_E* 3une_E 3unf_E* 3unh_E
Probab=99.85 E-value=2.7e-22 Score=179.06 Aligned_cols=144 Identities=14% Similarity=0.132 Sum_probs=117.9
Q ss_pred CcCcCccCCccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhccc--------
Q psy9489 90 SFSTPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKI-------- 161 (279)
Q Consensus 90 ~~~~~~~~G~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~~~-------- 161 (279)
.+++++++|+|+|||+++||||||+|+|.+.+. .++.+||++|++|+++++||..||+|.|.+.++...
T Consensus 24 YA~~av~~Gtt~vgi~~~dgVVlaaD~r~~~gl---~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~ 100 (263)
T 1iru_F 24 YAMEAVKQGSATVGLKSKTHAVLVALKRAQSEL---AAHQKKILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFD 100 (263)
T ss_dssp HHHHHHHHSCCEEEEECSSEEEEEEECCCSSTT---BCCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCcEEEEEeCCEEEEEEeccccccc---ccchhcEEEEcCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHHcC
Confidence 346688899999999999999999999988774 258899999999999999999999999999988511
Q ss_pred -------------------------ccccceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccCh
Q psy9489 162 -------------------------TPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDY 216 (279)
Q Consensus 162 -------------------------~pi~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~ 216 (279)
+|+..+..+.|++.+++.|+..|+.|++ +..++.+.|+|+
T Consensus 101 ~~i~v~~la~~l~~~l~~~t~~~~~RP~~v~~lvaG~D~~gp~Ly~idp~G~~--------------~~~~~~aiGsgs- 165 (263)
T 1iru_F 101 RPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYDDMGPHIFQTCPSANY--------------FDCRAMSIGARS- 165 (263)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHBTTCCCCCEEEEEEEEETTEEEEEEECSSSCE--------------EEESEEEESTTH-
T ss_pred CCCCHHHHHHHHHHHHHHhhcccccccceEEEEEEEEcCCCCEEEEECCCCCE--------------EEeeEEEcCccc-
Confidence 1322223334887677899999999987 666899999999
Q ss_pred hhHHHHHHHHHhhccc--ccccccCCCCCHHHHHHHHHHH
Q psy9489 217 ADFQYLNDIVKQKILD--DDLHNDGFVLKPKSLHSWLTRV 254 (279)
Q Consensus 217 aD~~~l~~~l~~~~~~--~~~~ee~~~l~~~~la~~isr~ 254 (279)
+++..+|++.|++ +++++|+.++..++|.+.+.++
T Consensus 166 ---~~a~~~Le~~~~~~~~ms~eea~~la~~al~~~~~rd 202 (263)
T 1iru_F 166 ---QSARTYLERHMSEFMECNLNELVKHGLRALRETLPAE 202 (263)
T ss_dssp ---HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCTT
T ss_pred ---HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHhcc
Confidence 9999999999997 7777777777777776666554
No 47
>1q5q_A Proteasome alpha-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_A 1q5r_A
Probab=99.84 E-value=3.1e-22 Score=178.29 Aligned_cols=147 Identities=14% Similarity=0.150 Sum_probs=117.4
Q ss_pred CCCCCcc-c-cCCCcCcCccCCccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhh
Q psy9489 79 NVLPHYF-R-RSGSFSTPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDI 156 (279)
Q Consensus 79 ~~~~~~~-~-~~~~~~~~~~~G~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~ 156 (279)
+.+|.++ . ....+++++++|+|+|||+++||||||+|+| +++.+||++|++|+++++||..||+|.|.+.
T Consensus 6 ~~sPe~~~~~qvEYA~~av~~Gtt~vgi~~~dgVVlaaD~r--------s~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~ 77 (259)
T 1q5q_A 6 YASAEQIMRDRSELARKGIARGRSVVVLTFRDGVLFVAENP--------STALHKVSELYDRLGFAAVGKYNEFENLRRA 77 (259)
T ss_dssp ---CHHHHHHHHHHHHHHHHTSCCEEEEECSSEEEEEECCS--------CSSSCSEEEEETTEEEEEEECHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHhcCCcEEEEEeCCEEEEEEecC--------CCCcCcEEEeCCCEEEEEccCHHHHHHHHHH
Confidence 4455554 1 2345678999999999999999999999999 4789999999999999999999999999996
Q ss_pred hhcc--------c-------------------------ccccceeeEEEEE----eCCcEEEEEcCCCccCceeeecCCC
Q psy9489 157 VKQK--------I-------------------------TPLTTGTSVLGLV----FNGGVILAADSAGYYGSMMRFNDCP 199 (279)
Q Consensus 157 l~~~--------~-------------------------~pi~~g~tvlgi~----~~~gvlia~D~~gs~g~li~~~~~~ 199 (279)
++.. . +|+..+..+.|++ ..++.|+..|+.|++
T Consensus 78 ~~~~~~~~~~~~~~~~i~v~~la~~l~~~l~q~yt~~~rP~~v~~lvaG~D~~~~~~gp~Ly~idp~G~~---------- 147 (259)
T 1q5q_A 78 GIVHADMRGYSYDRRDVTGRSLANAYAQTLGTIFTEQPKPYEVEICVAEVGRVGSPKAPQLYRITYDGSI---------- 147 (259)
T ss_dssp HHHHHHHHHHHSCGGGCCHHHHHHHHHHHHHHHHHHSSSCCCEEEEEEECCCSSCCCCCEEEEEETTSCE----------
T ss_pred HHHHHHHHHHHcCCcCCCHHHHHHHHHHHHHHHhccCCCCceEEEEEEEEcccCCCCCCEEEEECCCCce----------
Confidence 5530 0 1211222333887 567899999999987
Q ss_pred ceEEe-cccEEEEeccChhhHHHHHHHHHhhcccccccccCCCCCHHHHHHHH
Q psy9489 200 RIMQI-NKFTILGAGNDYADFQYLNDIVKQKILDDDLHNDGFVLKPKSLHSWL 251 (279)
Q Consensus 200 kI~~i-~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~~ee~~~l~~~~la~~i 251 (279)
. ..++.+.|+|+ +.+..+|++.|+++|+++|+.++..++|.+.+
T Consensus 148 ----~~~~~~~aiG~gs----~~a~~~Le~~~~~~ms~eea~~la~~al~~~~ 192 (259)
T 1q5q_A 148 ----VDEQHFVVMGGTT----EPIATAMRESYRADLDLEAAVGIAVNALRQGG 192 (259)
T ss_dssp ----EEESSEEEESSSH----HHHHHHHHHHCCTTCCHHHHHHHHHHHHTTCC
T ss_pred ----eeCCCEEEECCCh----HHHHHHHHhhccCCCCHHHHHHHHHHHHHHHh
Confidence 5 56799999999 99999999999998888888888888888777
No 48
>3mi0_A Proteasome subunit alpha; enzyme inhibitors, lactones, proteasome endopeptidase comple mycobacterium tuberculosis, hydrolase; HET: SA6; 2.20A {Mycobacterium tuberculosis} SCOP: d.153.1.4 PDB: 3h6f_A 3krd_A* 3h6i_A* 3mka_A 2fhh_A* 2fhg_A 3hfa_D 3hf9_A 3mfe_D
Probab=99.84 E-value=1e-21 Score=173.72 Aligned_cols=138 Identities=14% Similarity=0.183 Sum_probs=115.9
Q ss_pred CCCcCcCccCCccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhcc-------
Q psy9489 88 SGSFSTPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQK------- 160 (279)
Q Consensus 88 ~~~~~~~~~~G~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~~------- 160 (279)
...+++++++|+|+|||+++||||||+|+| +++++||++|++|++++++|+.+|++.|.+.++.+
T Consensus 17 ~EYA~~av~~GtT~vgi~~kdgVVlaadkr--------~~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~~~~~~~l~~~~ 88 (248)
T 3mi0_A 17 SELARKGIARAKSVVALAYAGGVLFVAENP--------SRSLQKISELYDRVGFAAAGKFNEFDNLRRGGIQFADTRGYA 88 (248)
T ss_dssp HHHHHHHHHTSCCEEEEEETTEEEEEEECC--------CSSSCSEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhCCCcEEEEEeCCEEEEEEeCC--------CCCCCCeEEECCCEEEEEccCHHHHHHHHHHHHHHHHHHHHh
Confidence 345678999999999999999999999999 46899999999999999999999999997766531
Q ss_pred -c-ccc------------------------cceeeEEEEEe----CCcEEEEEcCCCccCceeeecCCCceEEec-ccEE
Q psy9489 161 -I-TPL------------------------TTGTSVLGLVF----NGGVILAADSAGYYGSMMRFNDCPRIMQIN-KFTI 209 (279)
Q Consensus 161 -~-~pi------------------------~~g~tvlgi~~----~~gvlia~D~~gs~g~li~~~~~~kI~~i~-~~~~ 209 (279)
. .++ ..+..+.|++. +++.|+.+|+.|++ .. .++.
T Consensus 89 ~~~~~i~v~~la~~l~~~l~q~yt~~~rP~gv~~liaG~D~~~~~~gp~Ly~~Dp~G~~--------------~~e~~~~ 154 (248)
T 3mi0_A 89 YDRRDVTGRQLANVYAQTLGTIFTEQAKPYEVELCVAEVAHYGETKRPELYRITYDGSI--------------ADEPHFV 154 (248)
T ss_dssp SCGGGCCHHHHHHHHHHHHHHHHHHSSSCCCEEEEEEECCCTTCCCCCEEEEECTTSCE--------------EEESSEE
T ss_pred cCCCCCCHHHHHHHHHHHHHHHhccCCCCceEEEEEEEEcCCCCCCCCEEEEECCCeEE--------------eecccEE
Confidence 1 121 11223338876 67999999999987 64 7899
Q ss_pred EEeccChhhHHHHHHHHHhhcccccccccCCCCCHHHHHHHH
Q psy9489 210 LGAGNDYADFQYLNDIVKQKILDDDLHNDGFVLKPKSLHSWL 251 (279)
Q Consensus 210 ~~gSG~~aD~~~l~~~l~~~~~~~~~~ee~~~l~~~~la~~i 251 (279)
+.|+|+ +.+..+|+++|+++|+++|+.++..++|.+.+
T Consensus 155 a~Gsgs----~~a~~~Le~~y~~~mt~eeai~la~~aL~~~~ 192 (248)
T 3mi0_A 155 VMGGTT----EPIANALKESYAENASLTDALRIAVAALRAGS 192 (248)
T ss_dssp EESSCH----HHHHHHHHHHCCTTCCHHHHHHHHHHHHHHC-
T ss_pred EECccH----HHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHH
Confidence 999999 99999999999999999999999999998888
No 49
>1iru_N 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_M* 3une_M 3unf_M* 3unh_M
Probab=99.82 E-value=4e-20 Score=160.43 Aligned_cols=118 Identities=49% Similarity=0.955 Sum_probs=110.5
Q ss_pred cccccceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhccccccc-ccC
Q psy9489 161 ITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDLH-NDG 239 (279)
Q Consensus 161 ~~pi~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~~-ee~ 239 (279)
.+++..|+++||++++|||++++|++.+.|.++.+++.+||++++++++++.+|..+|++.+.+.++.+.+ .+++ +++
T Consensus 2 ~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~-~~~~~~~~ 80 (219)
T 1iru_N 2 QNPMVTGTSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGASGDYADFQYLKQVLGQMVI-DEELLGDG 80 (219)
T ss_dssp CSCCSEECCCEEEEETTEEEEEEECCEEETTEEEECSCCCEEEETTTEEEEEEEEHHHHHHHHHHHHHHHH-HHHHHCSS
T ss_pred CCCccCCceEEEEEeCCEEEEEECCccccCcEEecCCCCceEEeCCCEEEEeccCHHHHHHHHHHHHHHHH-HHHHHHcC
Confidence 36788999999999999999999999999999999999999999999999999999999999999999998 6766 888
Q ss_pred CCCCHHHHHHHHHHHHhhccCCCCccceEEEEEEEeCCCC
Q psy9489 240 FVLKPKSLHSWLTRVLYNRRSQFDPLWINAFVAGMQNGEP 279 (279)
Q Consensus 240 ~~l~~~~la~~isr~lys~r~~~~P~~vs~ii~G~D~~~p 279 (279)
.+++++.+++.+++.+|++|..++||++++||||||+++|
T Consensus 81 ~~~~v~~la~~l~~~ly~~r~~~~P~~v~~lvaG~D~~gp 120 (219)
T 1iru_N 81 HSYSPRAIHSWLTRAMYSRRSKMNPLWNTMVIGGYADGES 120 (219)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHTTCCCCEEEEEEEEETTEE
T ss_pred CCCCHHHHHHHHHHHHHHhcccCCCceEEEEEEEEECCCC
Confidence 9999999999999999998878899999999999997655
No 50
>1ryp_N 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_N* 1jd2_M* 1g65_M 1vsy_N 1z7q_N 2f16_M* 2fak_M* 2fny_M* 2gpl_M* 3d29_M* 3dy3_M* 3dy4_M* 3e47_M* 3gpj_M* 3gpt_M* 3gpw_M* 3hye_M* 3l5q_R 3mg0_M* 3mg4_M* ...
Probab=99.81 E-value=1.1e-19 Score=159.09 Aligned_cols=118 Identities=35% Similarity=0.707 Sum_probs=110.5
Q ss_pred cccccceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhccccccc----
Q psy9489 161 ITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDLH---- 236 (279)
Q Consensus 161 ~~pi~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~~---- 236 (279)
.+|+..|+++||++++|||++++|++.++|.++.+++.+||++++++++++.+|..+|++.+.+.++.+.+ .+++
T Consensus 2 ~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~-~~~~~~~~ 80 (233)
T 1ryp_N 2 QQPIVTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIERLLKDLVT-ENAYDNPL 80 (233)
T ss_dssp CCCCEEECCEEEEEETTEEEEEEECCEEETTEEEESCCCCEEEETTTEEEEEEEEHHHHHHHHHHHHHHHH-HHHTTCTT
T ss_pred cccccCCceEEEEEECCEEEEEEcCccccCCeeecCCcCceEEeCCCEEEEccccHHHHHHHHHHHHHHHH-HHhhccch
Confidence 36788999999999999999999999999999999999999999999999999999999999999999988 6777
Q ss_pred -ccCCCCCHHHHHHHHHHHHhhccCCCCccceEEEEEEEeCC-CC
Q psy9489 237 -NDGFVLKPKSLHSWLTRVLYNRRSQFDPLWINAFVAGMQNG-EP 279 (279)
Q Consensus 237 -ee~~~l~~~~la~~isr~lys~r~~~~P~~vs~ii~G~D~~-~p 279 (279)
+++.+++++.+++.+++.+|++|.+++||++++||||||++ +|
T Consensus 81 ~~~~~~~~v~~la~~l~~~ly~~r~~~~P~~v~~lvaG~D~~~gp 125 (233)
T 1ryp_N 81 ADAEEALEPSYIFEYLATVMYQRRSKMNPLWNAIIVAGVQSNGDQ 125 (233)
T ss_dssp TTTTTSCCHHHHHHHHHHHHHHHHHTTCCCCEEEEEEEECTTSCE
T ss_pred hhcCCCCCHHHHHHHHHHHHHHhcCCCCCceEEEEEEEEcCCCCE
Confidence 78899999999999999999988888999999999999974 55
No 51
>1ryp_A 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_G* 1g65_G 1vsy_A 2f16_G* 2fak_G* 2fny_G* 2gpl_G* 3d29_G* 3dy3_G* 3dy4_G* 3e47_G* 3gpj_G* 3gpt_G* 3gpw_G* 3hye_G* 3l5q_A 3mg0_G* 3mg4_G* 3oeu_G* 3oev_G* ...
Probab=99.81 E-value=8e-20 Score=161.04 Aligned_cols=122 Identities=11% Similarity=0.082 Sum_probs=113.1
Q ss_pred hhhcccccccc-eeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhccccc
Q psy9489 156 IVKQKITPLTT-GTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDD 234 (279)
Q Consensus 156 ~l~~~~~pi~~-g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~ 234 (279)
.+++.++++.. |+++||++++||||+++|++.+ ++++..++.+||++++++++++.+|..+|++.+.+.++.+.+ .+
T Consensus 18 QvEYA~~av~~~Gtt~vgi~~~dgVvlaad~r~~-~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~r~~~~-~~ 95 (243)
T 1ryp_A 18 QVEYAFKATNQTNINSLAVRGKDCTVVISQKKVP-DKLLDPTTVSYIFCISRTIGMVVNGPIPDARNAALRAKAEAA-EF 95 (243)
T ss_dssp HHHHHHHHTTTTCCCEEEEECSSEEEEEEECCCC-CTTBCGGGCCSEEECSSSCEEEEESCHHHHHHHHHHHHHHHH-HH
T ss_pred HHHHHHHHHhcCCCcEEEEEeCCEEEEEEEecCC-ccccCCCcCCceEEECCCEEEEEEecHHHHHHHHHHHHHHHH-HH
Confidence 34566788889 9999999999999999999988 899999999999999999999999999999999999999998 77
Q ss_pred ccccCCCCCHHHHHHHHHHHH--hhccCCCCccceEEEEEEEeC-CCC
Q psy9489 235 LHNDGFVLKPKSLHSWLTRVL--YNRRSQFDPLWINAFVAGMQN-GEP 279 (279)
Q Consensus 235 ~~ee~~~l~~~~la~~isr~l--ys~r~~~~P~~vs~ii~G~D~-~~p 279 (279)
+++++.+++++.+++.+++.+ |++|+.++||+|++||||||+ +||
T Consensus 96 ~~~~~~~~~v~~la~~l~~~l~~y~~~~~~rP~~v~~lvaG~D~~~gp 143 (243)
T 1ryp_A 96 RYKYGYDMPCDVLAKRMANLSQIYTQRAYMRPLGVILTFVSVDEELGP 143 (243)
T ss_dssp HHHHSSCCCHHHHHHHHHHHHHHHHHBTTSCCCSCEEEEEEEETTTEE
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHhccCCccccceEEEEEEEcCCCCc
Confidence 888999999999999999999 898888999999999999996 555
No 52
>1g0u_M Proteasome component PRE4; ubiquitin, degradation, protease, NTN-hydrolase; 2.40A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 2zcy_M* 3bdm_M* 3mg6_M* 3mg7_M* 3mg8_M* 3nzj_M* 3nzw_M* 3nzx_M*
Probab=99.80 E-value=2.3e-19 Score=160.25 Aligned_cols=121 Identities=34% Similarity=0.687 Sum_probs=111.6
Q ss_pred hcccccccceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhccccccc-
Q psy9489 158 KQKITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDLH- 236 (279)
Q Consensus 158 ~~~~~pi~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~~- 236 (279)
++..+|+..|+++|||+++||||+++|++.+.|.++..++.+||++++++++++.+|..+|++.+.+.++.+.+ .+++
T Consensus 32 ~~~~~av~~GtT~vgi~~~dgVVlAaD~r~t~g~~i~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~lr~~~~-~~~~~ 110 (266)
T 1g0u_M 32 VNTQQPIVTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIERLLKDLVT-ENAYD 110 (266)
T ss_dssp --CCCCCEEECCEEEEEETTEEEEEEECCEEETTEEEECCCCCEEECTTSEEEEEEEEHHHHHHHHHHHHHHHH-HHHTT
T ss_pred hhhccCcccCceEEEEEECCEEEEEEcCCcccCceeecCCcCcEEEcCCCEEEEeccCHHHHHHHHHHHHHHHH-Hhhhc
Confidence 34568899999999999999999999999999999999999999999999999999999999999999999988 6776
Q ss_pred ----ccCCCCCHHHHHHHHHHHHhhccCCCCccceEEEEEEEeCC-CC
Q psy9489 237 ----NDGFVLKPKSLHSWLTRVLYNRRSQFDPLWINAFVAGMQNG-EP 279 (279)
Q Consensus 237 ----ee~~~l~~~~la~~isr~lys~r~~~~P~~vs~ii~G~D~~-~p 279 (279)
+++.+++++.+++.+++.+|++|.+++||+|++||||||++ +|
T Consensus 111 ~~~~~~~~~~~v~~la~~l~~~ly~~r~~~~P~~v~~lvaG~D~~~gp 158 (266)
T 1g0u_M 111 NPLADAEEALEPSYIFEYLATVMYQRRSKMNPLWNAIIVAGVQSNGDQ 158 (266)
T ss_dssp CTTTTTTTSCCHHHHHHHHHHHHHHHHHTTCCCCEEEEEEEECTTSCE
T ss_pred cchhhcCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEEEEcCCCCE
Confidence 78899999999999999999988778999999999999974 54
No 53
>1iru_B 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_A* 3une_A 3unf_A* 3unh_A
Probab=99.79 E-value=2.3e-19 Score=157.15 Aligned_cols=122 Identities=15% Similarity=0.231 Sum_probs=111.8
Q ss_pred hhhcccccccceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhcccccc
Q psy9489 156 IVKQKITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDL 235 (279)
Q Consensus 156 ~l~~~~~pi~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~ 235 (279)
.+++..+++..|+++||++++|||++++|++.+ ++++..++.+||++++++++++.+|..+|++.+.+.++.+.+ .++
T Consensus 20 QvEya~~av~~Gtt~vgi~~~dgVvlaaD~r~~-~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~-~~~ 97 (233)
T 1iru_B 20 QIEYALAAVAGGAPSVGIKAANGVVLATEKKQK-SILYDERSVHKVEPITKHIGLVYSGMGPDYRVLVHRARKLAQ-QYY 97 (233)
T ss_dssp HHHHHHHHHHTSCCEEEEECSSCEEEEEECCCC-CSSBCSTTCCSSEESSSSEEEEEEECHHHHHHHHHHHHHHHH-HHH
T ss_pred hhHhHHHHHHcCCcEEEEEeCCEEEEEEEecCC-ccccccccCCeEEEECCCEEEEEEEccHHHHHHHHHHHHHHH-HHH
Confidence 345667888999999999999999999999987 688899999999999999999999999999999999999998 778
Q ss_pred cccCCCCCHHHHHHHHHHHH--hhccCCCCccceEEEEEEEeCCCC
Q psy9489 236 HNDGFVLKPKSLHSWLTRVL--YNRRSQFDPLWINAFVAGMQNGEP 279 (279)
Q Consensus 236 ~ee~~~l~~~~la~~isr~l--ys~r~~~~P~~vs~ii~G~D~~~p 279 (279)
++++.+++++.+++++++.+ |+++.+++||+|++||||||++||
T Consensus 98 ~~~~~~~~v~~la~~l~~~~~~y~~~~~~rP~~v~~lvaG~D~~gp 143 (233)
T 1iru_B 98 LVYQEPIPTAQLVQRVASVMQEYTQSGGVRPFGVSLLICGWNEGRP 143 (233)
T ss_dssp HHHSSCCCHHHHHHHHHHHHHHTTTSBTBCCCSEEEEEEEECSSSE
T ss_pred HHHCCCCCHHHHHHHHHHHHHHhcCcCCCCCcEEEEEEEEEeCCCC
Confidence 88889999999999999999 677777899999999999997665
No 54
>1yar_H Proteasome beta subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_H 1yau_H 3ipm_H 1pma_B 3jrm_H 3c92_H 3c91_H 3jse_H 3jtl_H
Probab=99.78 E-value=7.6e-19 Score=152.30 Aligned_cols=113 Identities=19% Similarity=0.315 Sum_probs=103.0
Q ss_pred cccceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhcccccccccCCCC
Q psy9489 163 PLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDLHNDGFVL 242 (279)
Q Consensus 163 pi~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~~ee~~~l 242 (279)
++..|+++||++++|||++++|++.++|+++..++.+||++++++++++.+|..+|++.+.+.++.+.+ .++++++.++
T Consensus 4 ~~~~Gtt~vgi~~~dgVvlaaD~r~~~g~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~-~~~~~~~~~~ 82 (217)
T 1yar_H 4 TLETGTTTVGITLKDAVIMATERRVTMENFIMHKNGKKLFQIDTYTGMTIAGLVGDAQVLVRYMKAELE-LYRLQRRVNM 82 (217)
T ss_dssp -----CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHH-HHHHHHSSCC
T ss_pred CCCCCccEEEEEeCCEEEEEEcCCCCCCCEEecCccCCeEEeCCCEEEEeCcCHHHHHHHHHHHHHHHH-HHHHHHCCCC
Confidence 456899999999999999999999999999999999999999999999999999999999999999998 7788889999
Q ss_pred CHHHHHHHHHHHHhhccCCCCccceEEEEEEEeCCCC
Q psy9489 243 KPKSLHSWLTRVLYNRRSQFDPLWINAFVAGMQNGEP 279 (279)
Q Consensus 243 ~~~~la~~isr~lys~r~~~~P~~vs~ii~G~D~~~p 279 (279)
+++.+++.+++.+|.+| ++||++++|||||| +||
T Consensus 83 ~v~~la~~l~~~~~~~r--~rp~~v~~lvaG~D-~gp 116 (217)
T 1yar_H 83 PIEAVATLLSNMLNQVK--YMPYMVQLLVGGID-TAP 116 (217)
T ss_dssp CHHHHHHHHHHHHHHTT--TSCCCEEEEEEEES-SSE
T ss_pred CHHHHHHHHHHHHHhcC--CCCceEEEEEEEEC-CCC
Confidence 99999999999999977 78999999999999 665
No 55
>1iru_M 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_L* 3une_L 3unf_L* 3unh_L
Probab=99.78 E-value=1.2e-18 Score=150.40 Aligned_cols=114 Identities=20% Similarity=0.393 Sum_probs=105.8
Q ss_pred cccc-ceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhcccccccccCC
Q psy9489 162 TPLT-TGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDLHNDGF 240 (279)
Q Consensus 162 ~pi~-~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~~ee~~ 240 (279)
.|+. .|+++||++++|||++++|++.+.+.++..++.+||++++++++++.+|..+|++.+.+.++.+.+ .+.++++.
T Consensus 3 ~p~v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~-~~~~~~~~ 81 (213)
T 1iru_M 3 SPYVFNGGTILAIAGEDFAIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKIIEARLK-MYKHSNNK 81 (213)
T ss_dssp CSCCCCCCEEEEEEETTEEEEEEECCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHH-HHHHHHSS
T ss_pred CCccCCCCcEEEEEeCCEEEEEECCCcccCCEEecCCCCcEEEcCCCEEEEccccHHHHHHHHHHHHHHHH-HHHHhcCC
Confidence 4543 799999999999999999999999988888999999999999999999999999999999999988 77888889
Q ss_pred CCCHHHHHHHHHHHHhhccCCCCccceEEEEEEEeCCC
Q psy9489 241 VLKPKSLHSWLTRVLYNRRSQFDPLWINAFVAGMQNGE 278 (279)
Q Consensus 241 ~l~~~~la~~isr~lys~r~~~~P~~vs~ii~G~D~~~ 278 (279)
+++++.+++.+++.+|++| ++||++++||||||+++
T Consensus 82 ~~~v~~la~~l~~~~y~~r--~~P~~v~~lvaG~D~~g 117 (213)
T 1iru_M 82 AMTTGAIAAMLSTILYSRR--FFPYYVYNIIGGLDEEG 117 (213)
T ss_dssp CCCHHHHHHHHHHHHHHTT--TSCCCEEEEEEEECTTS
T ss_pred CCCHHHHHHHHHHHHHhhC--CCCceEEEEEEEEcCCC
Confidence 9999999999999999988 78999999999999643
No 56
>3h4p_A Proteasome subunit alpha; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=99.78 E-value=4.1e-19 Score=158.49 Aligned_cols=122 Identities=19% Similarity=0.266 Sum_probs=111.1
Q ss_pred hhhcccccccceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhcccccc
Q psy9489 156 IVKQKITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDL 235 (279)
Q Consensus 156 ~l~~~~~pi~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~ 235 (279)
.+++.++++..|+++|||++++|||+++|++.+.+ ++..++.+||++++++++++.+|..+|++.+.+.++.+.+ .+.
T Consensus 27 QvEYA~~av~~Gtt~vgi~~~dgVVlaaD~r~~~~-li~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~~r~~~~-~y~ 104 (264)
T 3h4p_A 27 QVEYAREAVRRGTTAIGIACKDGVVLAVDRRITSK-LVKIRSIEKIFQIDDHVAAATSGLVADARVLIDRARLEAQ-IYR 104 (264)
T ss_dssp HHHHHHHHHHHSCCEEEECCSSEEEEEEECCCCST-TBCTTTCCCEEEEETTEEEEEEECSHHHHHHHTTHHHHHH-HHH
T ss_pred HHHhHHHHHhcCCcEEEEEECCEEEEEEecCccCC-ccccCccccEEEecCcEEEEeccchHHHHHHHHHHHHHHH-hhH
Confidence 35667789999999999999999999999998874 7888999999999999999999999999999999999987 678
Q ss_pred cccCCCCCHHHHHHHHHHHH--hhccCCCCccceEEEEEEEeCCCC
Q psy9489 236 HNDGFVLKPKSLHSWLTRVL--YNRRSQFDPLWINAFVAGMQNGEP 279 (279)
Q Consensus 236 ~ee~~~l~~~~la~~isr~l--ys~r~~~~P~~vs~ii~G~D~~~p 279 (279)
+.++.+++++.+++.+++.+ |+++++++||+|++||||||++||
T Consensus 105 ~~~~~~i~v~~la~~l~~~~~~yt~~~~~rP~~v~~lvaG~D~~gp 150 (264)
T 3h4p_A 105 LTYGEEISIEMLAKKICDIKQAYTQHGGVRPFGVSLLIAGIDKNEA 150 (264)
T ss_dssp HTTCSCCCHHHHHHHHHHHHHHTTSBSSCCCCSEEEEEEEEETTEE
T ss_pred HhcCCCCCHHHHHHHHHHHHHHHhhccCCCCeeEEEEEEEEeCCcC
Confidence 88899999999999999988 566667899999999999998665
No 57
>1ryp_C 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_B* 1g65_B 2f16_B* 2fak_B* 2fny_B* 2gpl_B* 3d29_B* 3dy3_B* 3dy4_B* 3e47_B* 3gpj_B* 3gpt_B* 3gpw_B* 3hye_B* 3mg0_B* 3mg4_B* 3okj_B* 3shj_B* 3tdd_B* 3nzj_B* ...
Probab=99.77 E-value=7.9e-19 Score=154.71 Aligned_cols=123 Identities=14% Similarity=0.189 Sum_probs=110.9
Q ss_pred hhhcccccccceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhcccccc
Q psy9489 156 IVKQKITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDL 235 (279)
Q Consensus 156 ~l~~~~~pi~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~ 235 (279)
.+++.++++..|+++||++++|||++++|++.+.+.+...++.+||++++++++++.+|..+|++.+.+.++.+.+ .++
T Consensus 20 QvEyA~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~-~~~ 98 (244)
T 1ryp_C 20 QVEYALESISHAGTAIGIMASDGIVLAAERKVTSTLLEQDTSTEKLYKLNDKIAVAVAGLTADAEILINTARIHAQ-NYL 98 (244)
T ss_dssp HHHHHHHHHTTSCCEEEEEETTEEEEEEECSSCCSSBCSTTCCSSEEESSSSEEEEEEECHHHHHHHHHHHHHHHH-HHH
T ss_pred HHHhHHHHHhcCCcEEEEEeCCEEEEEEeeccCCcCccCCCCCCcEEEECCCEEEEEEEcHHHHHHHHHHHHHHHH-HHH
Confidence 3456678889999999999999999999999998766668899999999999999999999999999999999998 778
Q ss_pred cccCCCCCHHHHHHHHHHHH--hhccCCCCccceEEEEEEEe-CCCC
Q psy9489 236 HNDGFVLKPKSLHSWLTRVL--YNRRSQFDPLWINAFVAGMQ-NGEP 279 (279)
Q Consensus 236 ~ee~~~l~~~~la~~isr~l--ys~r~~~~P~~vs~ii~G~D-~~~p 279 (279)
++++.+++++.+++.+++.+ |+++.+++||+|++|||||| +++|
T Consensus 99 ~~~~~~~~v~~la~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~~~gp 145 (244)
T 1ryp_C 99 KTYNEDIPVEILVRRLSDIKQGYTQHGGLRPFGVSFIYAGYDDRYGY 145 (244)
T ss_dssp HHHSSCCCHHHHHHHHHHHHHHHHHBSSCCCCCEEEEEEEEETTTEE
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHhccCCccceEEEEEEEEEcCCCCC
Confidence 88899999999999999999 55666688999999999999 5554
No 58
>1yar_A Proteasome alpha subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_A 1pma_A 3c91_A 3c92_A 3ipm_A 2ku1_A 2ku2_A 1yau_A 3jrm_A 3jse_A 3jtl_A
Probab=99.77 E-value=1.1e-18 Score=152.82 Aligned_cols=122 Identities=18% Similarity=0.263 Sum_probs=110.2
Q ss_pred hhhcccccccceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhcccccc
Q psy9489 156 IVKQKITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDL 235 (279)
Q Consensus 156 ~l~~~~~pi~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~ 235 (279)
.+++..+++..|+++||++++|||++++|++.+.+ ++..++.+||++++++++++.+|..+|++.+.+.++.+.+ .++
T Consensus 23 QvEya~~av~~Gtt~vgi~~~dgVvlaaD~r~~~~-~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~-~~~ 100 (233)
T 1yar_A 23 QVEYAREAVKKGSTALGMKFANGVLLISDKKVRSR-LIEQNSIEKIQLIDDYVAAVTSGLVADARVLVDFARISAQ-QEK 100 (233)
T ss_dssp HHHHHHHHHTTSCCEEEEEETTEEEEEECCCCCCT-TBCSTTCCSEEEEETTEEEEEEEBHHHHHHHHHHHHHHHH-HHH
T ss_pred HHHhHHHHHhcCCcEEEEEECCEEEEEEeccCCcc-cccccccCeEEEecCCEEEEEeeCHHHHHHHHHHHHHHHH-HHH
Confidence 34566788999999999999999999999999884 7788899999999999999999999999999999999988 678
Q ss_pred cccCCCCCHHHHHHHHHHHHh--hccCCCCccceEEEEEEEeCCCC
Q psy9489 236 HNDGFVLKPKSLHSWLTRVLY--NRRSQFDPLWINAFVAGMQNGEP 279 (279)
Q Consensus 236 ~ee~~~l~~~~la~~isr~ly--s~r~~~~P~~vs~ii~G~D~~~p 279 (279)
++++.+++++.+++.+++.++ +++...+||++++||||||+++|
T Consensus 101 ~~~~~~~~v~~~a~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~~gp 146 (233)
T 1yar_A 101 VTYGSLVNIENLVKRVADQMQQYTQYGGVRPYGVSLIFAGIDQIGP 146 (233)
T ss_dssp HHHSSCCCHHHHHHHHHHHHHHTTTBTTBCCCCEEEEEEEECSSCE
T ss_pred HHHCCCCCHHHHHHHHHHHHHHhcCcCCcCcceEEEEEEEEeCCCC
Confidence 888999999999999999997 45556789999999999998665
No 59
>1ryp_D 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_C* 1g65_C 2f16_C* 2fak_C* 2fny_C* 2gpl_C* 3d29_C* 3dy3_C* 3dy4_C* 3e47_C* 3gpj_C* 3gpt_C* 3gpw_C* 3hye_C* 3mg0_C* 3mg4_C* 3oeu_C* 3oev_C* 3okj_C* 3shj_C* ...
Probab=99.77 E-value=1.2e-18 Score=153.31 Aligned_cols=123 Identities=15% Similarity=0.179 Sum_probs=111.0
Q ss_pred hhhcccccccceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhcccccc
Q psy9489 156 IVKQKITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDL 235 (279)
Q Consensus 156 ~l~~~~~pi~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~ 235 (279)
.+++.++++..|+++||++++|||++++|++.+.+.+...++.+||++++++++++.+|..+|++.+.+.++.+.+ .++
T Consensus 17 QvEya~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~-~~~ 95 (241)
T 1ryp_D 17 QVEYALEAVKRGTCAVGVKGKNCVVLGCERRSTLKLQDTRITPSKVSKIDSHVVLSFSGLNADSRILIEKARVEAQ-SHR 95 (241)
T ss_dssp HHHHHHHHHTTSCCEEEEECSSCEEEEEECCCSSCCBCTTTSCCSEEEEETTEEEEEEECHHHHHHHHHHHHHHHH-HHH
T ss_pred HHHHHHHHHHcCCCEEEEEeCCEEEEEEeeccCccCccccCCcCcEEEecCCEEEEEeecHHHHHHHHHHHHHHHH-HHH
Confidence 3456678888999999999999999999999999877777799999999999999999999999999999999998 778
Q ss_pred cccCCCCCHHHHHHHHHHHHhh--ccCCCCccceEEEEEEEeC--CCC
Q psy9489 236 HNDGFVLKPKSLHSWLTRVLYN--RRSQFDPLWINAFVAGMQN--GEP 279 (279)
Q Consensus 236 ~ee~~~l~~~~la~~isr~lys--~r~~~~P~~vs~ii~G~D~--~~p 279 (279)
++++.+++++.+++.+++.++. ++++++||+|++||||||+ ++|
T Consensus 96 ~~~~~~~~v~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~~~~gp 143 (241)
T 1ryp_D 96 LTLEDPVTVEYLTRYVAGVQQRYTQSGGVRPFGVSTLIAGFDPRDDEP 143 (241)
T ss_dssp HHHSSCCCHHHHHHHHHHHHHHTTSSTTBCCCSEEEEEEECCTTCCSC
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHccCCCCCCcceeeEEEEEcCCCCCe
Confidence 8889999999999999999975 4456789999999999997 666
No 60
>1iru_A 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_G* 3une_G 3unf_G* 3unh_G
Probab=99.77 E-value=8.3e-19 Score=154.81 Aligned_cols=121 Identities=10% Similarity=0.143 Sum_probs=110.8
Q ss_pred hhcccccccc-eeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhcccccc
Q psy9489 157 VKQKITPLTT-GTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDL 235 (279)
Q Consensus 157 l~~~~~pi~~-g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~ 235 (279)
+++..+++.. |+++||++++|||++++|++.+ +.++..++.+||++++++++++.+|..+|++.+.+.++.+.+ .++
T Consensus 25 vEya~~av~~~Gtt~vgi~~~dgVvlaaD~r~~-~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~-~~~ 102 (246)
T 1iru_A 25 VEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVP-DKLLDSSTVTHLFKITENIGCVMTGMTADSRSQVQRARYEAA-NWK 102 (246)
T ss_dssp HHHHHHHHHTTCCEEEEEECSSEEEEEEECCCC-CSSBCGGGCCSEEESSSSCEEEEEECHHHHHHHHHHHHHHHH-HHH
T ss_pred HHHHHHHHhcCCCCEEEEEeCCEEEEEEeecCC-CcccCCCccCceEEECCCEEEEEeccHHHHHHHHHHHHHHHH-HHH
Confidence 4566788888 9999999999999999999987 688999999999999999999999999999999999999998 778
Q ss_pred cccCCCCCHHHHHHHHHHH--HhhccCCCCccceEEEEEEEeC-CCC
Q psy9489 236 HNDGFVLKPKSLHSWLTRV--LYNRRSQFDPLWINAFVAGMQN-GEP 279 (279)
Q Consensus 236 ~ee~~~l~~~~la~~isr~--lys~r~~~~P~~vs~ii~G~D~-~~p 279 (279)
++++.+++++.+++.+++. +|++|.+++||+|++||||||+ ++|
T Consensus 103 ~~~~~~~~~~~la~~l~~~~~~y~~~~~~rp~~v~~lvaG~D~~~gp 149 (246)
T 1iru_A 103 YKYGYEIPVDMLCKRIADISQVYTQNAEMRPLGCCMILIGIDEEQGP 149 (246)
T ss_dssp HHHSSCCCHHHHHHHHHHHHHHHHHBSSBCCCSEEEEEEEEETTTEE
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHhcCCCCCCcceEEEEEEEeCCCCe
Confidence 8899999999999999988 4887777899999999999996 554
No 61
>1ryp_M 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_M* 1jd2_L* 1g65_L 1vsy_M 1z7q_M 2f16_L* 2fak_L* 2fny_L* 2gpl_L* 3d29_L* 3dy3_L* 3dy4_L* 3e47_L* 3gpj_L* 3gpt_L* 3gpw_L* 3hye_L* 3l5q_Q 3mg0_L* 3mg4_L* ...
Probab=99.77 E-value=2.1e-18 Score=150.03 Aligned_cols=111 Identities=19% Similarity=0.264 Sum_probs=104.5
Q ss_pred cceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhcccccccccC-CCCC
Q psy9489 165 TTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDLHNDG-FVLK 243 (279)
Q Consensus 165 ~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~~ee~-~~l~ 243 (279)
..|+++|||+++|+|++++|++.+.|.++..++.+||++++++++++.+|..+|++.+.+.++.+.+ .++++++ .+++
T Consensus 7 ~~Gtt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~-~~~~~~~~~~~~ 85 (222)
T 1ryp_M 7 DNGGTILGIAGEDFAVLAGDTRNITDYSINSRYEPKVFDCGDNIVMSANGFAADGDALVKRFKNSVK-WYHFDHNDKKLS 85 (222)
T ss_dssp CCCCEEEEEECSSCEEEEEECCEEETTEEEESCCCCCEEEETTEEEEEEESHHHHHHHHHHHHHHHH-HHHHHTTTCCCC
T ss_pred cCCccEEEEEeCCEEEEEEecccccCCEecCCCcCcEEEeCCCEEEEccccHHHHHHHHHHHHHHHH-HHHHHcCCCCCC
Confidence 3799999999999999999999999988899999999999999999999999999999999999998 7788888 9999
Q ss_pred HHHHHHHHHHHHhhccCCCCccceEEEEEEEeCCC
Q psy9489 244 PKSLHSWLTRVLYNRRSQFDPLWINAFVAGMQNGE 278 (279)
Q Consensus 244 ~~~la~~isr~lys~r~~~~P~~vs~ii~G~D~~~ 278 (279)
++.+++.+++.+|++| ++||++++||||||+++
T Consensus 86 v~~la~~l~~~ly~~r--~~P~~v~~ivaG~D~~g 118 (222)
T 1ryp_M 86 INSAARNIQHLLYGKR--FFPYYVHTIIAGLDEDG 118 (222)
T ss_dssp HHHHHHHHHHHHHTTT--TSCCCEEEEEEEECTTS
T ss_pred HHHHHHHHHHHHHhcC--CCCceEEEEEEEEcCCC
Confidence 9999999999999987 78999999999999643
No 62
>1ryp_G 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_F* 1g65_F 1vsy_G 2f16_F* 2fak_F* 2fny_F* 2gpl_F* 3d29_F* 3dy3_F* 3dy4_F* 3e47_F* 3gpj_F* 3gpt_F* 3gpw_F* 3hye_F* 3l5q_L 3mg0_F* 3mg4_F* 3okj_F* 3shj_F* ...
Probab=99.77 E-value=7.6e-19 Score=155.00 Aligned_cols=122 Identities=11% Similarity=0.105 Sum_probs=109.4
Q ss_pred hhhcccccccceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhcccccc
Q psy9489 156 IVKQKITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDL 235 (279)
Q Consensus 156 ~l~~~~~pi~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~ 235 (279)
.+++..+++..|+++||++++|||++++|++.+.+.++.. +.+||++++++++++.+|..+|++.+.+.++.+.+ .++
T Consensus 19 QvEya~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~-~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~-~~~ 96 (244)
T 1ryp_G 19 QVEYAVKAVENGTTSIGIKCNDGVVFAVEKLITSKLLVPQ-KNVKIQVVDRHIGCVYSGLIPDGRHLVNRGREEAA-SFK 96 (244)
T ss_dssp HHHHHHHHHHTSCCEEEEEETTEEEEEEEEECCCTTBCTT-TSCCCEEETTTEEEEEEECHHHHHHHHHHHHHHHH-HHH
T ss_pred HHHhHHHHHHCCCCEEEEEECCEEEEEEecccCCCCcccc-ccCceEEecCCEEEEEcccHHHHHHHHHHHHHHHH-HHH
Confidence 3456678899999999999999999999999988776644 45999999999999999999999999999999998 778
Q ss_pred cccCCCCCHHHHHHHHHHHH--hhccCCCCccceEEEEEEEeCCCC
Q psy9489 236 HNDGFVLKPKSLHSWLTRVL--YNRRSQFDPLWINAFVAGMQNGEP 279 (279)
Q Consensus 236 ~ee~~~l~~~~la~~isr~l--ys~r~~~~P~~vs~ii~G~D~~~p 279 (279)
++++.+++++.+++.+++.+ |+++++++||++++||||||++||
T Consensus 97 ~~~~~~~~v~~la~~l~~~~~~~t~~~~~rp~~v~~lvaG~D~~gp 142 (244)
T 1ryp_G 97 KLYKTPIPIPAFADRLGQYVQAHTLYNSVRPFGVSTIFGGVDKNGA 142 (244)
T ss_dssp HHHSSCCCHHHHHHHHHHHHHHTTSCTTBCCCCEEEEEEEEETTEE
T ss_pred HHhCCCCCHHHHHHHHHHHHHHHhcccCccCceEEEEEEEEeCCcC
Confidence 88899999999999999998 666777899999999999997665
No 63
>1j2q_H Proteasome beta subunit; ubiquitin, CP, hydrolase; HET: CIB; 2.83A {Archaeoglobus fulgidus} SCOP: d.153.1.4
Probab=99.77 E-value=1.9e-18 Score=148.03 Aligned_cols=109 Identities=18% Similarity=0.300 Sum_probs=102.8
Q ss_pred eeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhcccccccccCCCCCHHHH
Q psy9489 168 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDLHNDGFVLKPKSL 247 (279)
Q Consensus 168 ~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~~ee~~~l~~~~l 247 (279)
+++||++++|||++++|++.+.|.++..++.+||++++++++++.+|..+|++.+.+.++.+.+ .++++++.+++++.+
T Consensus 1 tt~vgi~~~dgVvlaad~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~-~~~~~~~~~~~~~~~ 79 (202)
T 1j2q_H 1 TTTVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIADRMAMTTAGSVGDAQFLARIIKIEAN-LYEIRRERKPTVRAI 79 (202)
T ss_dssp CCEEEEEETTEEEEEEECCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHH-HHHHHHSSCCCHHHH
T ss_pred CcEEEEEeCCEEEEEECCCcCcCCEEeeccccCEEEcCCCEEEEecccHHHHHHHHHHHHHHHH-HHHHHHCCCCCHHHH
Confidence 5789999999999999999999999999999999999999999999999999999999999998 778888999999999
Q ss_pred HHHHHHHHhhccCCCCccceEEEEEEEeCCCC
Q psy9489 248 HSWLTRVLYNRRSQFDPLWINAFVAGMQNGEP 279 (279)
Q Consensus 248 a~~isr~lys~r~~~~P~~vs~ii~G~D~~~p 279 (279)
++.+++.+|.+| ++||++++||||||++||
T Consensus 80 a~~l~~~~~~~r--~rp~~~~~lvaG~D~~gp 109 (202)
T 1j2q_H 80 ATLTSNLLNSYR--YFPYLVQLLIGGIDSEGK 109 (202)
T ss_dssp HHHHHHHHHHTT--TSCCCEEEEEEEEETTEE
T ss_pred HHHHHHHHHhhC--CCCceEEEEEEEEeCCCC
Confidence 999999999977 789999999999997655
No 64
>1iru_G 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_F* 3une_F 3unf_F* 3unh_F
Probab=99.77 E-value=1.1e-18 Score=154.95 Aligned_cols=121 Identities=14% Similarity=0.203 Sum_probs=109.7
Q ss_pred hhcccccccceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhccccccc
Q psy9489 157 VKQKITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDLH 236 (279)
Q Consensus 157 l~~~~~pi~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~~ 236 (279)
+++..+++..|+++||+++++||++++|++.+.+.++ .++.+||++++++++++.+|..+|++.+.+.++.+.+ .+++
T Consensus 23 vEyA~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~-~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~-~~~~ 100 (254)
T 1iru_G 23 VEYAMKAVENSSTAIGIRCKDGVVFGVEKLVLSKLYE-EGSNKRLFNVDRHVGMAVAGLLADARSLADIAREEAS-NFRS 100 (254)
T ss_dssp HHHHHHHHHTSCCEEEEECSSBEEEEEEEECSCTTBC-TTTTCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHH-HHHH
T ss_pred HHhHHHHHhcCCCEEEEEECCEEEEEEecccCCCCcC-cCcCCcEEEECCCEEEEEecChHHHHHHHHHHHHHHH-HHHH
Confidence 4567788999999999999999999999999987776 4789999999999999999999999999999999998 7788
Q ss_pred ccCCCCCHHHHHHHHHHHHh--hccCCCCccceEEEEEEEe-CCCC
Q psy9489 237 NDGFVLKPKSLHSWLTRVLY--NRRSQFDPLWINAFVAGMQ-NGEP 279 (279)
Q Consensus 237 ee~~~l~~~~la~~isr~ly--s~r~~~~P~~vs~ii~G~D-~~~p 279 (279)
.++.+++++.+++.+++.++ ++|++++||+|++|||||| +++|
T Consensus 101 ~~~~~~~v~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~~~gp 146 (254)
T 1iru_G 101 NFGYNIPLKHLADRVAMYVHAYTLYSAVRPFGCSFMLGSYSVNDGA 146 (254)
T ss_dssp HHSSCCCHHHHHHHHHHHHHHTTSBSSBCCCSEEEEEEEEETTTEE
T ss_pred HhCCCCCHHHHHHHHHHHHHHhccccccccceEEEEEEEEeCCCCc
Confidence 89999999999999999994 5566689999999999999 5554
No 65
>1iru_E 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_D* 3une_D 3unf_D* 3unh_D
Probab=99.76 E-value=1.2e-18 Score=153.38 Aligned_cols=122 Identities=16% Similarity=0.206 Sum_probs=110.3
Q ss_pred hhhcccccccceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhcccccc
Q psy9489 156 IVKQKITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDL 235 (279)
Q Consensus 156 ~l~~~~~pi~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~ 235 (279)
.+++..+++..|+++||++++|||++++|++.+.+... .++.+||++++++++++.+|..+|++.+.+.++.+.+ .++
T Consensus 23 QvEya~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~-~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~-~~~ 100 (241)
T 1iru_E 23 QVEYDIEAIKLGSTAIGIQTSEGVCLAVEKRITSPLME-PSSIEKIVEIDAHIGCAMSGLIADAKTLIDKARVETQ-NHW 100 (241)
T ss_dssp HHHHHHHHHTTSCCEEEEEETTEEEEEEECCCCCTTBC-TTSCCSEEEEETTEEEEEEECHHHHHHHHHHHHHHHH-HHH
T ss_pred HHHHHHHHHHcCCcEEEEEcCCEEEEEEecccCCcCcC-ccccceEEEEcCCEEEEEeeChHHHHHHHHHHHHHHH-HHH
Confidence 34567788899999999999999999999999988766 8899999999999999999999999999999999998 778
Q ss_pred cccCCCCCHHHHHHHHHHHH--hhccCC-----CCccceEEEEEEEeCCCC
Q psy9489 236 HNDGFVLKPKSLHSWLTRVL--YNRRSQ-----FDPLWINAFVAGMQNGEP 279 (279)
Q Consensus 236 ~ee~~~l~~~~la~~isr~l--ys~r~~-----~~P~~vs~ii~G~D~~~p 279 (279)
++++.+++++.+++.+++.+ |+++.. .+||++++||||||+++|
T Consensus 101 ~~~~~~~~v~~~a~~l~~~~~~y~~~~~~~~l~~rp~~v~~lvaG~D~~gp 151 (241)
T 1iru_E 101 FTYNETMTVESVTQAVSNLALQFGEEDADPGAMSRPFGVALLFGGVDEKGP 151 (241)
T ss_dssp HHHSSCCCHHHHHHHHHTTTTCBCSTTCCSSCBSSCCCEEEEEEEEETTEE
T ss_pred HHhCCCCCHHHHHHHHHHHHHHHhccccccccccccceEEEEEEEEeCCCC
Confidence 88899999999999999988 666655 789999999999996655
No 66
>1iru_D 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unf_C* 3une_C* 3unh_C 3unb_C*
Probab=99.76 E-value=1.3e-18 Score=153.75 Aligned_cols=122 Identities=12% Similarity=0.189 Sum_probs=110.3
Q ss_pred hhhcccccccceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhcccccc
Q psy9489 156 IVKQKITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDL 235 (279)
Q Consensus 156 ~l~~~~~pi~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~ 235 (279)
.+++.++++..|+++||++++|||++++|++.+.+ ++..++.+||++++++++++.+|..+|++.+.+.++.+.+ .++
T Consensus 18 QvEYA~~av~~Gtt~vgi~~~dgVvlaaD~r~~~~-l~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~-~~~ 95 (248)
T 1iru_D 18 QVEYAQEAVKKGSTAVGVRGRDIVVLGVEKKSVAK-LQDERTVRKICALDDNVCMAFAGLTADARIVINRARVECQ-SHR 95 (248)
T ss_dssp HHHHHHHHHHTSCCEEEECCSSEEEEEECCCCCCS-SSCGGGGCSEEESSSSCEEEEEECHHHHHHHHHHHHHHHH-HHH
T ss_pred HHHHHHHHHHcCCCEEEEEeCCEEEEEEeeccccc-CccCCCCCcEEEEcCCEEEEEeecHHHHHHHHHHHHHHHH-HHH
Confidence 34667788999999999999999999999999886 6778899999999999999999999999999999999998 778
Q ss_pred cccCCCCCHHHHHHHHHHHH--hhccCCCCccceEEEEEEEe-CCCC
Q psy9489 236 HNDGFVLKPKSLHSWLTRVL--YNRRSQFDPLWINAFVAGMQ-NGEP 279 (279)
Q Consensus 236 ~ee~~~l~~~~la~~isr~l--ys~r~~~~P~~vs~ii~G~D-~~~p 279 (279)
+.++.+++++.+++.+++.+ |+++...|||+|++|||||| +++|
T Consensus 96 ~~~~~~~~v~~la~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~~~gp 142 (248)
T 1iru_D 96 LTVEDPVTVEYITRYIASLKQRYTQSNGRRPFGISALIVGFDFDGTP 142 (248)
T ss_dssp HHSSSCCCHHHHHHHHHHHHHHTTSBTTBCCCCEEEEEEEECSSSCE
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHhccCCcccccEEEEEEEEeCCCCc
Confidence 88999999999999999999 45555678999999999999 5555
No 67
>3h4p_a Proteasome subunit beta; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=99.76 E-value=2.1e-18 Score=149.75 Aligned_cols=110 Identities=17% Similarity=0.291 Sum_probs=103.0
Q ss_pred eeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhcccccccccCCCCCHHH
Q psy9489 167 GTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDLHNDGFVLKPKS 246 (279)
Q Consensus 167 g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~~ee~~~l~~~~ 246 (279)
|+++||++++|||++++|++.++|.++..++.+||++++++++++.+|..+|++.+.+.++.+.+ .++++++.+++++.
T Consensus 1 Gtt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~-~~~~~~~~~~~v~~ 79 (219)
T 3h4p_a 1 MTTTVGLICDDAVILATDKRASLGNLVADKEAKKLYKIDDYIAMTIAGSVGDAQAIVRLLIAEAK-LYKMRTGRNIPPLA 79 (219)
T ss_dssp -CCEEEEEETTEEEEECCCCEEETTEEEETTCCCEEEEETTEEEECCSCHHHHHHHHHHHHHHHH-HHHHHTSSCCCHHH
T ss_pred CccEEEEEECCEEEEEEcCCcccCCEeeccccceeEEecCCEEEEeeEcHHHHHHHHHHHHHHHH-HHHHHcCCCCCHHH
Confidence 67899999999999999999999999999999999999999999999999999999999999998 78888999999999
Q ss_pred HHHHHHHHHhhccCCCCccceEEEEEEEeC-CCC
Q psy9489 247 LHSWLTRVLYNRRSQFDPLWINAFVAGMQN-GEP 279 (279)
Q Consensus 247 la~~isr~lys~r~~~~P~~vs~ii~G~D~-~~p 279 (279)
+++.+++.+|.+| ++||+|++||||||+ ++|
T Consensus 80 la~~l~~~~~~~~--~~P~~v~~lvaG~D~~~gp 111 (219)
T 3h4p_a 80 CATLLSNILHSSR--MFPFLTQIIIGGYDLLEGA 111 (219)
T ss_dssp HHHHHHHHHHHTT--TTTCCCCCEEEEEETTTEE
T ss_pred HHHHHHHHHHHhc--CCCceEEEEEEEEeCCCCc
Confidence 9999999999876 789999999999997 554
No 68
>3nzj_F Proteasome component C1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 1z7q_G* 3nzw_F* 3nzx_F* 3un4_F* 3un8_F* 4b4t_G 4g4s_G* 3bdm_F* 1fnt_G* 2zcy_F*
Probab=99.76 E-value=1.3e-18 Score=156.94 Aligned_cols=121 Identities=12% Similarity=0.121 Sum_probs=109.5
Q ss_pred hhcccccccceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhccccccc
Q psy9489 157 VKQKITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDLH 236 (279)
Q Consensus 157 l~~~~~pi~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~~ 236 (279)
+++.++++..|+++|||++++|||+++|++.+.+.++. .+.+||++++++++++.+|..+|++.+.+.++.+++ .+++
T Consensus 24 vEYA~kAv~~GtT~Vgik~kdGVVlAaD~r~t~gl~~~-~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~lr~e~~-~y~~ 101 (288)
T 3nzj_F 24 VEYAVKAVENGTTSIGIKCNDGVVFAVEKLITSKLLVP-QKNVKIQVVDRHIGCVYSGLIPDGRHLVNRGREEAA-SFKK 101 (288)
T ss_dssp HHHHHHHHHTSCCEEEEEETTEEEEEEEEEECCTTBCT-TCSCCCEEETTTEEEEEEECHHHHHHHHHHHHHHHH-HHHH
T ss_pred HHHHHHHHhcCCcEEEEEECCEEEEEEcCCcccCCccc-cccceEEEEcCCEEEEecCcHHHHHHHHHHHHHHHH-HHHH
Confidence 56678899999999999999999999999998876654 478999999999999999999999999999999998 7888
Q ss_pred ccCCCCCHHHHHHHHHHHH--hhccCCCCccceEEEEEEEeCCCC
Q psy9489 237 NDGFVLKPKSLHSWLTRVL--YNRRSQFDPLWINAFVAGMQNGEP 279 (279)
Q Consensus 237 ee~~~l~~~~la~~isr~l--ys~r~~~~P~~vs~ii~G~D~~~p 279 (279)
.++.+++++.+++.+++.+ |+++++++||+|++||||||++||
T Consensus 102 ~~~~~i~v~~lA~~l~~~l~~yt~~~~~rP~gv~~lvaG~D~~Gp 146 (288)
T 3nzj_F 102 LYKTPIPIPAFADRLGQYVQAHTLYNSVRPFGVSTIFGGVDKNGA 146 (288)
T ss_dssp HHSSCCCHHHHHHHHHHHHHHTTSCTTBCCCCEEEEEEEEETTEE
T ss_pred HcCCcCCHHHHHHHHHHHHHHHHHhccCCCceEEEEEEEEeCCCC
Confidence 8899999999999999998 455667899999999999998665
No 69
>1j2p_A Alpha-ring, proteasome alpha subunit; hydrolase; 2.60A {Archaeoglobus fulgidus} SCOP: d.153.1.4 PDB: 1j2q_A*
Probab=99.76 E-value=2.8e-18 Score=151.41 Aligned_cols=121 Identities=18% Similarity=0.237 Sum_probs=109.6
Q ss_pred hhhcccccccceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhcccccc
Q psy9489 156 IVKQKITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDL 235 (279)
Q Consensus 156 ~l~~~~~pi~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~ 235 (279)
.+++..+++..|+++||++++|||++++|++.+.+ ++..++.+||++++++++++.+|..+|++.+.+.++.+.+ .++
T Consensus 23 QvEya~~av~~Gtt~vgi~~~dgVvlaaD~r~~~~-l~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~-~~~ 100 (246)
T 1j2p_A 23 QVEYAREAVKRGATAIGIKCKEGVILIADKRVGSK-LLEKDTIEKIYKIDEHICAATSGLVADARVLIDRARIEAQ-INR 100 (246)
T ss_dssp HHHHHHHHHHTSCCEEEEEETTEEEEEEECCCSCT-TBCGGGCCSEEECSSSEEEEEEECHHHHHHHHHHHHHHHH-HHH
T ss_pred HHHhHHHHHHcCCcEEEEEECCEEEEEEeccCCcc-ccccCccCcEEEECCCEEEEEeEccHHHHHHHHHHHHHHH-HHH
Confidence 34566788899999999999999999999998874 6668899999999999999999999999999999999988 778
Q ss_pred cccCCCCCHHHHHHHHHHHH--hhccCCCCccceEEEEEEEeCCCC
Q psy9489 236 HNDGFVLKPKSLHSWLTRVL--YNRRSQFDPLWINAFVAGMQNGEP 279 (279)
Q Consensus 236 ~ee~~~l~~~~la~~isr~l--ys~r~~~~P~~vs~ii~G~D~~~p 279 (279)
+.++.+++++.+++.+++.+ |+++.+.+||++++|||||| ++|
T Consensus 101 ~~~~~~~~v~~la~~l~~~~~~y~~~~~~rp~~v~~lvaG~D-~gp 145 (246)
T 1j2p_A 101 LTYDIPITVKELAKKICDFKQQYTQYGGVRPFGVSLLIAGVN-EVP 145 (246)
T ss_dssp HHSSSCCCHHHHHHHHHHHHHHTTSBTTBCCCCEEEEEEEES-SSE
T ss_pred HHhCCCCCHHHHHHHHHHHHHHHhcccCcccccEEEEEEEEC-CCC
Confidence 88889999999999999999 67776788999999999999 665
No 70
>1ryp_F 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_E* 1g65_E 2f16_E* 2fak_E* 2fny_E* 2gpl_E* 3d29_E* 3dy3_E* 3dy4_E* 3e47_E* 3gpj_E* 3gpt_E* 3gpw_E* 3hye_E* 3mg0_E* 3mg4_E* 3oeu_E* 3oev_E* 3okj_E* 3shj_E* ...
Probab=99.75 E-value=3.4e-18 Score=149.67 Aligned_cols=119 Identities=13% Similarity=0.094 Sum_probs=106.7
Q ss_pred hhcccccccceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhccccccc
Q psy9489 157 VKQKITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDLH 236 (279)
Q Consensus 157 l~~~~~pi~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~~ 236 (279)
+++.++++..|+++||++++|||++++|++.+.+ +. ++.+||++++++++++.+|..+|++.+.+.++.+.+ .+++
T Consensus 21 vEyA~~av~~Gtt~vgi~~~dgVvlaaD~r~~~~-l~--~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~-~~~~ 96 (233)
T 1ryp_F 21 VEYALEAIKQGSVTVGLRSNTHAVLVALKRNADE-LS--SYQKKIIKCDEHMGLSLAGLAPDARVLSNYLRQQCN-YSSL 96 (233)
T ss_dssp HHHHHHHHHTSCCEEEEECSSEEEEEEECCCSST-TB--CCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHH-HHHH
T ss_pred HHHHHHHHHcCCCEEEEEcCCEEEEEEEeccccc-cc--cccCcEEEEcCCEEEEEEechHHHHHHHHHHHHHHH-HHHH
Confidence 4566778889999999999999999999998876 32 478999999999999999999999999999999998 7788
Q ss_pred ccCCCCCHHHHHHHHHHHH--hhccCCCCccceEEEEEEEeCCCC
Q psy9489 237 NDGFVLKPKSLHSWLTRVL--YNRRSQFDPLWINAFVAGMQNGEP 279 (279)
Q Consensus 237 ee~~~l~~~~la~~isr~l--ys~r~~~~P~~vs~ii~G~D~~~p 279 (279)
+++.+++++.+++.+++.+ |+++.+.|||+|++||||||++||
T Consensus 97 ~~~~~~~v~~la~~l~~~~~~~t~~~~~rp~~v~~lvaG~D~~gp 141 (233)
T 1ryp_F 97 VFNRKLAVERAGHLLCDKAQKNTQSYGGRPYGVGLLIIGYDKSGA 141 (233)
T ss_dssp HHSCCCCHHHHHHHHHHHHHHHHHBTTCCCCCEEEEEEEEETTEE
T ss_pred HHCCCCCHHHHHHHHHHHHHHHhcccCCcCcceEEEEEEEeCCcC
Confidence 8999999999999999999 565566789999999999997655
No 71
>1iru_C 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_B* 3une_B 3unf_B* 3unh_B
Probab=99.75 E-value=3.5e-18 Score=152.14 Aligned_cols=123 Identities=15% Similarity=0.100 Sum_probs=110.8
Q ss_pred hhhcccccccceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhcccccc
Q psy9489 156 IVKQKITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDL 235 (279)
Q Consensus 156 ~l~~~~~pi~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~ 235 (279)
.+++.++++..|+++|||+++|||++++|++.+.+.++..++.+||++++++++++.+|..+|++.+.+.++.+.+ .+.
T Consensus 20 QvEYA~~av~~Gtt~vgi~~~dgVVlaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~-~~~ 98 (261)
T 1iru_C 20 QVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLNEDMACSVAGITSDANVLTNELRLIAQ-RYL 98 (261)
T ss_dssp HHHHHHHHHTTSCCEEEEBCSSEEEEEECCCCCCTTBCCCSSCSSEEECSSSEEEEEEECHHHHHHHHHHHHHHHH-HHH
T ss_pred HHHhHHHHHhcCCcEEEEEeCCEEEEEEecccCCcccccCCCCccEEEecCCEEEEEeEcHHHHHHHHHHHHHHHH-HHH
Confidence 3466778899999999999999999999999999888877789999999999999999999999999999999998 778
Q ss_pred cccCCCCCHHHHHHHHHHHHhh--ccCCCCccceEEEEEEEeC-CCC
Q psy9489 236 HNDGFVLKPKSLHSWLTRVLYN--RRSQFDPLWINAFVAGMQN-GEP 279 (279)
Q Consensus 236 ~ee~~~l~~~~la~~isr~lys--~r~~~~P~~vs~ii~G~D~-~~p 279 (279)
+.++.+++++.+++.+++.++. ++.+++||+|++||||||+ ++|
T Consensus 99 ~~~~~~~~v~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~~~gp 145 (261)
T 1iru_C 99 LQYQEPIPCEQLVTALCDIKQAYTQFGGKRPFGVSLLYIGWDKHYGF 145 (261)
T ss_dssp HHHSSCCCHHHHHHHHHHHHHHTTTBSSCCCCCEEEEEEEEETTTEE
T ss_pred HHHCCCCCHHHHHHHHHHHHHHhccccCcCcceEEEEEEEEeCCCCc
Confidence 8889999999999999999964 3445789999999999995 454
No 72
>3unf_N Proteasome subunit beta type-9; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_N
Probab=99.74 E-value=7.5e-18 Score=143.85 Aligned_cols=108 Identities=17% Similarity=0.184 Sum_probs=101.0
Q ss_pred eeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhcccccccccCCCCCHHHH
Q psy9489 168 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDLHNDGFVLKPKSL 247 (279)
Q Consensus 168 ~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~~ee~~~l~~~~l 247 (279)
+|+||++++|||++++|++.+++.++..++.+||++++++++++.+|..+|++.+.+.++.+.+ .++++++.+++++.+
T Consensus 1 TT~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~-~~~~~~~~~~~v~~~ 79 (199)
T 3unf_N 1 TTIMAVEFDGGVVVGSDSRVSAGTAVVNRVFDKLSPLHQRIFCALSGSAADAQAIADMAAYQLE-LHGLELEEPPLVLAA 79 (199)
T ss_dssp CEEEEEECSSCEEEEECCCEEETTEEEESSCCCEEEEETTEEEEECSCHHHHHHHHHHHHHHHH-HHHHHTTSCCCHHHH
T ss_pred CeEEEEEeCCeEEEEECCcccCCceeEccccCceEEcCCCEEEEecccHHHHHHHHHHHHHHHH-HHHHHhCCCCCHHHH
Confidence 5789999999999999999999989999999999999999999999999999999999999998 788888999999999
Q ss_pred HHHHHHHHhhccCCCCccceEEEEEEEeC-CCC
Q psy9489 248 HSWLTRVLYNRRSQFDPLWINAFVAGMQN-GEP 279 (279)
Q Consensus 248 a~~isr~lys~r~~~~P~~vs~ii~G~D~-~~p 279 (279)
++.+++.+|.+| +||++++||||||+ ++|
T Consensus 80 a~~l~~~l~~~~---~p~~v~~lvaG~D~~~~p 109 (199)
T 3unf_N 80 ANVVKNISYKYR---EDLLAHLIVAGWDQREGG 109 (199)
T ss_dssp HHHHHHHHHHTT---TTCCCCEEEEEEETTTEE
T ss_pred HHHHHHHHHhcC---CCceEEEEEEEEeCCCCc
Confidence 999999999876 59999999999997 444
No 73
>1iru_J 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_I* 3une_I 3unf_I* 3unh_I
Probab=99.74 E-value=6.4e-18 Score=145.01 Aligned_cols=111 Identities=23% Similarity=0.328 Sum_probs=103.7
Q ss_pred ceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhcccccccccCCCCCHH
Q psy9489 166 TGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDLHNDGFVLKPK 245 (279)
Q Consensus 166 ~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~~ee~~~l~~~ 245 (279)
+|+++||++++|||++++|++.+.+.++..++.+||++++++++++.+|..+|++.+.+.++.+.+ .++++++.+++++
T Consensus 7 ~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~-~~~~~~~~~~~v~ 85 (205)
T 1iru_J 7 NGGAVMAMKGKNCVAIAADRRFGIQAQLVTTDFQKIFPMGDRLYIGLAGLATDVQTVAQRLKFRLN-LYELKEGRQIKPY 85 (205)
T ss_dssp SCCEEEEEECSSEEEEEEECCEEETTEEEESCCCCEEECSTTEEEECCSCHHHHHHHHHHHHHHHH-HHHHHSSSCCCHH
T ss_pred CCCeEEEEEeCCEEEEEECCccccCCeEeecCCccEEEeCCCEEEEccccHHHHHHHHHHHHHHHH-HHHhhcCCCCCHH
Confidence 689999999999999999999999888888899999999999999999999999999999999988 7788888999999
Q ss_pred HHHHHHHHHHhhccCCCCccceEEEEEEEeC--CCC
Q psy9489 246 SLHSWLTRVLYNRRSQFDPLWINAFVAGMQN--GEP 279 (279)
Q Consensus 246 ~la~~isr~lys~r~~~~P~~vs~ii~G~D~--~~p 279 (279)
.+++.+++.+|++| +.||++++||||||+ ++|
T Consensus 86 ~la~~l~~~~y~~r--~~P~~v~~lvaG~D~~~~~p 119 (205)
T 1iru_J 86 TLMSMVANLLYEKR--FGPYYTEPVIAGLDPKTFKP 119 (205)
T ss_dssp HHHHHHHHHHHTTT--TSCCSCCCEEEEECTTSCCE
T ss_pred HHHHHHHHHHHHhc--CCCceEEEEEEEEeCCCCCe
Confidence 99999999999988 569999999999994 555
No 74
>1iru_L 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_K* 3une_K 3unf_K* 3unh_K
Probab=99.74 E-value=1e-17 Score=143.64 Aligned_cols=109 Identities=18% Similarity=0.280 Sum_probs=102.4
Q ss_pred eeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhcccccccccCCCCCHHHH
Q psy9489 168 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDLHNDGFVLKPKSL 247 (279)
Q Consensus 168 ~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~~ee~~~l~~~~l 247 (279)
+++||++++|||++++|++.++|.++..++.+||++++++++++.+|..+|++.+.+.++.+.+ .++++++.+++++.+
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~-~~~~~~~~~~~v~~l 79 (204)
T 1iru_L 1 TTTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLARQCR-IYELRNKERISVAAA 79 (204)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECCBCHHHHHHHHHHHHHHHH-HHHHHHSSCCCHHHH
T ss_pred CeEEEEEeCCEEEEEEcCCcccCCEEEcCcccceEEcCCCEEEEccCcHHHHHHHHHHHHHHHH-HHHHHHCCCCCHHHH
Confidence 5789999999999999999999999999999999999999999999999999999999999998 778888999999999
Q ss_pred HHHHHHHHhhccCCCCccceEEEEEEEeCCCC
Q psy9489 248 HSWLTRVLYNRRSQFDPLWINAFVAGMQNGEP 279 (279)
Q Consensus 248 a~~isr~lys~r~~~~P~~vs~ii~G~D~~~p 279 (279)
++.+++.+|.+| .+|++|++||||||++||
T Consensus 80 a~~l~~~~~~~r--~~~~~v~~lvaG~D~~gp 109 (204)
T 1iru_L 80 SKLLANMVYQYK--GMGLSMGTMICGWDKRGP 109 (204)
T ss_dssp HHHHHHHHHTTT--TSCCCBEEEEEEECSSSE
T ss_pred HHHHHHHHHHhC--CCCeeEEEEEEEEeCCCC
Confidence 999999999887 469999999999998665
No 75
>1ryp_J 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_I* 1g65_I 1vsy_J 2f16_I* 2fak_I* 2fny_I* 2gpl_I* 3d29_I* 3dy3_I* 3dy4_I* 3e47_I* 3gpj_I* 3gpt_I* 3gpw_I* 3hye_I* 3l5q_N 3mg0_I* 3mg4_I* 3oeu_I* 3oev_I* ...
Probab=99.74 E-value=1.4e-17 Score=142.79 Aligned_cols=110 Identities=24% Similarity=0.359 Sum_probs=102.8
Q ss_pred ceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhcccccccccCCCCCHH
Q psy9489 166 TGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDLHNDGFVLKPK 245 (279)
Q Consensus 166 ~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~~ee~~~l~~~ 245 (279)
+|+++||++++|||++++|++.+.+.++..++.+||++++ +++++.+|..+|++.+.+.++.+.+ .++++++.+++++
T Consensus 7 ~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~-~i~~~~aG~~aD~~~l~~~~~~~~~-~~~~~~~~~~~v~ 84 (204)
T 1ryp_J 7 NGGIVVAMTGKDCVAIACDLRLGSQSLGVSNKFEKIFHYG-HVFLGITGLATDVTTLNEMFRYKTN-LYKLKEERAIEPE 84 (204)
T ss_dssp SCCEEEEEECSSEEEEEEECCEEETTEEEESCCCCEEEET-TEEEEEEECHHHHHHHHHHHHHHHH-HHHHHHSSCCCHH
T ss_pred CCCeEEEEEeCCEEEEEEcCCcccCCEEeeCCcceEEEeC-CEEEEeeEcHHHHHHHHHHHHHHHH-HHhhccCCCCCHH
Confidence 6899999999999999999999998888888999999999 9999999999999999999999998 7788888999999
Q ss_pred HHHHHHHHHHhhccCCCCccceEEEEEEEeC--CCC
Q psy9489 246 SLHSWLTRVLYNRRSQFDPLWINAFVAGMQN--GEP 279 (279)
Q Consensus 246 ~la~~isr~lys~r~~~~P~~vs~ii~G~D~--~~p 279 (279)
.+++.+++.+|++| +.||++++||||||+ ++|
T Consensus 85 ~la~~l~~~~y~~~--~~P~~v~~lvaG~D~~~~gp 118 (204)
T 1ryp_J 85 TFTQLVSSSLYERR--FGPYFVGPVVAGINSKSGKP 118 (204)
T ss_dssp HHHHHHHHHHHTTT--TSCCCEEEEEEEECTTTCCE
T ss_pred HHHHHHHHHHHHhc--CCCceEEEEEEEEeCCCCce
Confidence 99999999999988 459999999999995 555
No 76
>3nzj_K Proteasome component PRE2; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_K* 3nzx_K* 4b4t_5
Probab=99.74 E-value=9.3e-18 Score=151.27 Aligned_cols=115 Identities=19% Similarity=0.313 Sum_probs=102.7
Q ss_pred ccccceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhcccccccccCCC
Q psy9489 162 TPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDLHNDGFV 241 (279)
Q Consensus 162 ~pi~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~~ee~~~ 241 (279)
.++..|+|+||+++++|||+++|++.++|.++..++.+||++++++++++.+|..+|++.+.+.++.+++ .++++++.+
T Consensus 70 ~~v~~GtT~vgik~~dGVVlAaD~r~t~G~li~~~~~~KI~~I~d~i~~~~aG~~AD~~~l~~~lr~~~~-~y~~~~~~~ 148 (287)
T 3nzj_K 70 IKIAHGTTTLAFRFQGGIIVAVDSRATAGNWVASQTVKKVIEINPFLLGTMAGGAADCQFWETWLGSQCR-LHELREKER 148 (287)
T ss_dssp ------CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECEECHHHHHHHHHHHHHHHH-HHHHHHSSC
T ss_pred hheccCceEEEEEECCEEEEEEccccccCceeecCCcceEEEEcCcEEEEecCCHHHHHHHHHHHHHHHH-HHHHHhCCC
Confidence 4677999999999999999999999999999999999999999999999999999999999999999998 788888999
Q ss_pred CCHHHHHHHHHHHHhhccCCCCccceEEEEEEEe-CCCC
Q psy9489 242 LKPKSLHSWLTRVLYNRRSQFDPLWINAFVAGMQ-NGEP 279 (279)
Q Consensus 242 l~~~~la~~isr~lys~r~~~~P~~vs~ii~G~D-~~~p 279 (279)
++++.+++++++.+|.+| ..||++++|||||| +++|
T Consensus 149 isv~~la~~ls~~l~~~r--~~p~~v~~lvaG~D~~~gp 185 (287)
T 3nzj_K 149 ISVAAASKILSNLVYQYK--GAGLSMGTMICGYTRKEGP 185 (287)
T ss_dssp CCHHHHHHHHHHHHHHTT--TSCCCEEEEEEEEETTTEE
T ss_pred CCHHHHHHHHHHHHHhhc--CCCceEEEEEEEEcCCCCC
Confidence 999999999999999887 45999999999999 4454
No 77
>3nzj_H Proteasome component PUP1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_H* 3nzx_H* 4b4t_2
Probab=99.74 E-value=1e-17 Score=149.21 Aligned_cols=115 Identities=20% Similarity=0.284 Sum_probs=101.7
Q ss_pred cccccceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhcccccccccCC
Q psy9489 161 ITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDLHNDGF 240 (279)
Q Consensus 161 ~~pi~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~~ee~~ 240 (279)
.+++..|+++||++++|||++++|++.+.|.++..++.+||++++++++++++|..+|++.+.+.++.+.+ .++++++.
T Consensus 23 ~kav~~GtTivgi~~kdGVVlAaD~r~t~g~li~~~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~lr~~~~-~~~~~~~~ 101 (261)
T 3nzj_H 23 PKATSTGTTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGSNIE-LHSLYTSR 101 (261)
T ss_dssp -------CCEEEEEETTEEEEEEECCEEETTEEEETTCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHH-HHHHHHTS
T ss_pred CcccccCceEEEEEECCEEEEEEcCCcccCCeeccCCcceEEEEcCCEEEEeccCHHHHHHHHHHHHHHHH-HhHHhhCC
Confidence 45778999999999999999999999999999999999999999999999999999999999999999998 78888889
Q ss_pred CCCHHHHHHHHHHHHhhccCCCCccceEEEEEEEeCCCC
Q psy9489 241 VLKPKSLHSWLTRVLYNRRSQFDPLWINAFVAGMQNGEP 279 (279)
Q Consensus 241 ~l~~~~la~~isr~lys~r~~~~P~~vs~ii~G~D~~~p 279 (279)
+++++.+++.+++.+|.++ +||++++||||||++||
T Consensus 102 ~~~v~~~a~~l~~~l~~~~---~~~gv~llvaG~D~~Gp 137 (261)
T 3nzj_H 102 EPRVVSALQMLKQHLFKYQ---GHIGAYLIVAGVDPTGS 137 (261)
T ss_dssp CCCHHHHHHHHHHHHHHTT---TCSCEEEEEEEEETTEE
T ss_pred CCCHHHHHHHHHHHHHHhc---CcccEEEEEEEEeCCCC
Confidence 9999999999999998754 59999999999998665
No 78
>1ryp_E 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_D* 1g65_D 2f16_D* 2fak_D* 2fny_D* 2gpl_D* 3d29_D* 3dy3_D* 3dy4_D* 3e47_D* 3gpj_D* 3gpt_D* 3gpw_D* 3hye_D* 3mg0_D* 3mg4_D* 3okj_D* 3shj_D* 3tdd_D* 2z5c_C ...
Probab=99.74 E-value=5.3e-18 Score=149.25 Aligned_cols=122 Identities=12% Similarity=0.171 Sum_probs=108.8
Q ss_pred hhhcccccccceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhcccccc
Q psy9489 156 IVKQKITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDL 235 (279)
Q Consensus 156 ~l~~~~~pi~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~ 235 (279)
.+++.++++..|+++||++++|||++++|++.+.+.+. .++.+||++++++++++.+|..+|++.+.+.++.+.+ .++
T Consensus 15 QvEyA~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~-~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~-~~~ 92 (242)
T 1ryp_E 15 QVEYSLEAIKLGSTAIGIATKEGVVLGVEKRATSPLLE-SDSIEKIVEIDRHIGCAMSGLTADARSMIEHARTAAV-THN 92 (242)
T ss_dssp HHHHHHHHHTTSCCEEEEECSSCEEEEEECCCSSTTBC-GGGCCCEEEEETTEEEEEEESGGGHHHHHHHHHHHHH-HHH
T ss_pred HHHhHHHHHHcCCCEEEEEECCEEEEEEeecCCCcCcc-CccCCceEEEcCCEEEEEeecHHHHHHHHHHHHHHHH-HHH
Confidence 34667788899999999999999999999999988666 8899999999999999999999999999999999998 778
Q ss_pred cccCCCCCHHHHHHHHHHHHhh--ccCC------CCccceEEEEEEEe-CCCC
Q psy9489 236 HNDGFVLKPKSLHSWLTRVLYN--RRSQ------FDPLWINAFVAGMQ-NGEP 279 (279)
Q Consensus 236 ~ee~~~l~~~~la~~isr~lys--~r~~------~~P~~vs~ii~G~D-~~~p 279 (279)
++++.+++++.+++.+++.++. ++.. .|||+|++|||||| +++|
T Consensus 93 ~~~~~~~~v~~la~~l~~~~~~~t~~~~~~~~l~~RP~~v~~lvaG~D~~~gp 145 (242)
T 1ryp_E 93 LYYDEDINVESLTQSVCDLALRFGEGASGEERLMSRPFGVALLIAGHDADDGY 145 (242)
T ss_dssp HHHSSCCCHHHHHHHHHTTTTCCBSSCTTSCCCBSSCCSEEEEEEEEETTTEE
T ss_pred HHHCCCCCHHHHHHHHHHHHHHhccccCcccccccCcceEEEEEEEEeCCCCC
Confidence 8889999999999999998864 3433 67999999999999 5554
No 79
>1iru_F 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_E* 3une_E 3unf_E* 3unh_E
Probab=99.73 E-value=1.3e-17 Score=148.69 Aligned_cols=119 Identities=17% Similarity=0.196 Sum_probs=106.3
Q ss_pred hhcccccccceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhccccccc
Q psy9489 157 VKQKITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDLH 236 (279)
Q Consensus 157 l~~~~~pi~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~~ 236 (279)
+++.++++..|+++||++++||||+++|++.+.+. . ++.+||++++++++++.+|..+|++.+.+.++.+.+ .+++
T Consensus 22 vEYA~~av~~Gtt~vgi~~~dgVVlaaD~r~~~gl-~--~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~-~~~~ 97 (263)
T 1iru_F 22 IEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSEL-A--AHQKKILHVDNHIGISIAGLTADARLLCNFMRQECL-DSRF 97 (263)
T ss_dssp HHHHHHHHHHSCCEEEEECSSEEEEEEECCCSSTT-B--CCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHH-HHHH
T ss_pred HHHHHHHHHcCCcEEEEEeCCEEEEEEeccccccc-c--cchhcEEEEcCCEEEEEeCCHHHHHHHHHHHHHHHH-HHHH
Confidence 45667788899999999999999999999988863 2 478999999999999999999999999999999998 7788
Q ss_pred ccCCCCCHHHHHHHHHHHHh--hccCCCCccceEEEEEEEeCCCC
Q psy9489 237 NDGFVLKPKSLHSWLTRVLY--NRRSQFDPLWINAFVAGMQNGEP 279 (279)
Q Consensus 237 ee~~~l~~~~la~~isr~ly--s~r~~~~P~~vs~ii~G~D~~~p 279 (279)
.++.+++++.+++.+++.++ +++...+||+|++||||||++||
T Consensus 98 ~~~~~i~v~~la~~l~~~l~~~t~~~~~RP~~v~~lvaG~D~~gp 142 (263)
T 1iru_F 98 VFDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYDDMGP 142 (263)
T ss_dssp HHSSCCCHHHHHHHHHHHHHHHHHBTTCCCCCEEEEEEEEETTEE
T ss_pred HcCCCCCHHHHHHHHHHHHHHhhcccccccceEEEEEEEEcCCCC
Confidence 89999999999999999995 55556789999999999997655
No 80
>1ryp_H 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 3nzj_N* 3nzw_N* 3nzx_N* 1vsy_H 3l5q_B 1g65_N* 1fnt_H 1g0u_N* 1jd2_N* 1z7q_H 2f16_N* 2fak_N* 2fny_N* 2gpl_N* 2zcy_N* 3bdm_N* 3d29_N* 3dy3_N* 3dy4_N* 3e47_N* ...
Probab=99.73 E-value=1.9e-17 Score=142.04 Aligned_cols=114 Identities=21% Similarity=0.278 Sum_probs=105.2
Q ss_pred cccccceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhcccccccccCC
Q psy9489 161 ITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDLHNDGF 240 (279)
Q Consensus 161 ~~pi~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~~ee~~ 240 (279)
.+++..|+++||++++|||++++|++.+.+.++..++.+||++++++++++.+|..+|++.+.+.++.+.+ .++++++.
T Consensus 3 ~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~-~~~~~~~~ 81 (205)
T 1ryp_H 3 KGEVSLGASIMAVTFKDGVILGADSRTTTGAYIANRVTDKLTRVHDKIWCCRSGSAADTQAIADIVQYHLE-LYTSQYGT 81 (205)
T ss_dssp TTCCBCCCCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEEBHHHHHHHHHHHHHHHH-HHHHHHSS
T ss_pred CCCCcCCceEEEEEeCCEEEEEEcCCcccCcEEEcCCcCceEEcCCCEEEEccCCHHHHHHHHHHHHHHHH-HHHHHhCC
Confidence 46788999999999999999999999999889999999999999999999999999999999999999998 67888888
Q ss_pred CCCHHHHHHHHHHHHhhccCCCCccceEEEEEEEeC-CCC
Q psy9489 241 VLKPKSLHSWLTRVLYNRRSQFDPLWINAFVAGMQN-GEP 279 (279)
Q Consensus 241 ~l~~~~la~~isr~lys~r~~~~P~~vs~ii~G~D~-~~p 279 (279)
++++.+++.+++.+|.+|. + |++++||||||+ ++|
T Consensus 82 -~~v~~la~~l~~~~~~~~~--~-~~~~~lvaG~D~~~gp 117 (205)
T 1ryp_H 82 -PSTETAASVFKELCYENKD--N-LTAGIIVAGYDDKNKG 117 (205)
T ss_dssp -CCHHHHHHHHHHHHHHTTT--T-CCEEEEEEEEETTTEE
T ss_pred -CCHHHHHHHHHHHHHhhhc--C-ceEEEEEEEEecCCCc
Confidence 9999999999999998873 2 999999999996 444
No 81
>1ryp_B 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_B 1g0u_A* 1jd2_A* 1g65_A 1z7q_B 2f16_A* 2fak_A* 2fny_A* 2gpl_A* 2zcy_A* 3bdm_A* 3d29_A* 3dy3_A* 3dy4_A* 3e47_A* 3gpj_A* 3gpt_A* 3gpw_A* 3hye_A* 3mg0_A* ...
Probab=99.72 E-value=1.5e-17 Score=147.19 Aligned_cols=123 Identities=14% Similarity=0.160 Sum_probs=106.9
Q ss_pred hhhcccccccceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhcccccc
Q psy9489 156 IVKQKITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDL 235 (279)
Q Consensus 156 ~l~~~~~pi~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~ 235 (279)
.+++.++++..|+++||++++|||++++|++.+ ++++..++.+||++++++++++.+|..+|++.+.+.++.+.+..+.
T Consensus 20 QvEyA~~av~~Gtt~vgi~~~dgVvlaaD~r~~-~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~ 98 (250)
T 1ryp_B 20 QIDYALTAVKQGVTSLGIKATNGVVIATEKKSS-SPLAMSETLSKVSLLTPDIGAVYSGMGPDYRVLVDKSRKVAHTSYK 98 (250)
T ss_dssp HHHHHHHHHHTSCCEEEEEETTEEEEEEECCCS-CSSBCGGGCCSSEEEETTEEEEEEECHHHHHHHHHHHHHHHHHTTH
T ss_pred HHHhHHHHHHcCCcEEEEEECCEEEEEEeccCC-CccccCcccCceEEECCCEEEEeeeCHHHHHHHHHHHHHHHHHHHH
Confidence 346677889999999999999999999999987 7889999999999999999999999999999999999998873266
Q ss_pred cccCCCCCHHHHHHHHHHHH--hhccCCCCccceEEEEEEEeC-CCC
Q psy9489 236 HNDGFVLKPKSLHSWLTRVL--YNRRSQFDPLWINAFVAGMQN-GEP 279 (279)
Q Consensus 236 ~ee~~~l~~~~la~~isr~l--ys~r~~~~P~~vs~ii~G~D~-~~p 279 (279)
..++.+++++.+++.+.+.+ +.++.+++||+|++||||||+ ++|
T Consensus 99 ~~~~~~~~~~~l~~~~a~~~~~~~~~~~~rp~~v~~lvaG~D~~~gp 145 (250)
T 1ryp_B 99 RIYGEYPPTKLLVSEVAKIMQEATQSGGVRPFGVSLLIAGHDEFNGF 145 (250)
T ss_dssp HHHSSCCCHHHHHHHHHHHHHHTTTSBTBCCCCEEEEEEEEETTTEE
T ss_pred HHhCCCCCHHHHHHHHHHHHHHHHhcCCcccceEEEEEEEEcCCCCc
Confidence 66778999999888888876 444445789999999999996 454
No 82
>1iru_K 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_J* 3une_J 3unf_J* 3unh_J
Probab=99.72 E-value=2.2e-17 Score=141.18 Aligned_cols=110 Identities=17% Similarity=0.276 Sum_probs=99.7
Q ss_pred eeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhcccccccccCCCCCHHHH
Q psy9489 168 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDLHNDGFVLKPKSL 247 (279)
Q Consensus 168 ~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~~ee~~~l~~~~l 247 (279)
+++||++++|||++++|++.++|+++..++.+||++++++++++.+|..+|++.+.+.++.+.+ .++++++.+++++.+
T Consensus 2 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~-~~~~~~~~~~~v~~~ 80 (201)
T 1iru_K 2 EYLIGIQGPDYVLVASDRVAASNIVQMKDDHDKMFKMSEKILLLCVGEAGDTVQFAEYIQKNVQ-LYKMRNGYELSPTAA 80 (201)
T ss_dssp CCEEEEECSSEEEEEEECCEEETTEEEESSCCCEEECSSSEEEEEEESTTHHHHHHHHHHHHHH-HHHHHHSSCCCHHHH
T ss_pred ceEEEEEeCCEEEEEEcCccccCcEEEccCcceEEEecCCEEEEeCcCHHHHHHHHHHHHHHHH-HHHHHcCCCCCHHHH
Confidence 4789999999999999999999999999999999999999999999999999999999999998 788888899999999
Q ss_pred HHHHHHHH-hhccCCCCccceEEEEEEEeC-CCC
Q psy9489 248 HSWLTRVL-YNRRSQFDPLWINAFVAGMQN-GEP 279 (279)
Q Consensus 248 a~~isr~l-ys~r~~~~P~~vs~ii~G~D~-~~p 279 (279)
++++++.+ |.+|.+ +||++++||||||+ ++|
T Consensus 81 a~~~~~~l~~~~~~~-~p~~~~~lvaG~D~~~gp 113 (201)
T 1iru_K 81 ANFTRRNLADCLRSR-TPYHVNLLLAGYDEHEGP 113 (201)
T ss_dssp HHHHHHHHHHHHTSS-SCCCEEEEEEEEETTTEE
T ss_pred HHHHHHHHHHHHhcC-CCccEEEEEEEEeCCCCe
Confidence 99998876 554433 69999999999997 454
No 83
>1ryp_K 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_K 1g0u_J* 1jd2_J* 1g65_J 1vsy_K 1z7q_K 2f16_J* 2fak_J* 2fny_J* 2gpl_J* 2zcy_J* 3bdm_J* 3d29_J* 3dy3_J* 3dy4_J* 3e47_J* 3gpj_J* 3gpt_J* 3gpw_J* 3hye_J* ...
Probab=99.72 E-value=3.2e-17 Score=139.83 Aligned_cols=111 Identities=18% Similarity=0.294 Sum_probs=100.3
Q ss_pred eeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhcccccccccCCCCCHHHH
Q psy9489 168 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDLHNDGFVLKPKSL 247 (279)
Q Consensus 168 ~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~~ee~~~l~~~~l 247 (279)
+++||++++|||++++|++.+.+.++..++.+||++++++++++.+|..+|++.+.+.++.+.+ .++++++.+++++.+
T Consensus 2 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~-~~~~~~~~~~~v~~l 80 (198)
T 1ryp_K 2 DIILGIRVQDSVILASSKAVTRGISVLKDSDDKTRQLSPHTLMSFAGEAGDTVQFAEYIQANIQ-LYSIREDYELSPQAV 80 (198)
T ss_dssp CCEEEEECSSCEEEEEECCEEETTEEEESCCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHH-HHHHHHTSCCCHHHH
T ss_pred ceEEEEEECCEEEEEECCCcccCCEEEecCCCceEEeCCCEEEEeccCHHHHHHHHHHHHHHHH-HHHHhcCCCCCHHHH
Confidence 4789999999999999999999888888999999999999999999999999999999999998 778888899999999
Q ss_pred HHHHHHHHhhccCCCCccceEEEEEEEeC--CCC
Q psy9489 248 HSWLTRVLYNRRSQFDPLWINAFVAGMQN--GEP 279 (279)
Q Consensus 248 a~~isr~lys~r~~~~P~~vs~ii~G~D~--~~p 279 (279)
++.+++.+|..+...+||++++||||||+ ++|
T Consensus 81 a~~l~~~l~~~~~~r~p~~v~~lvaG~D~~~~~p 114 (198)
T 1ryp_K 81 SSFVRQELAKSIRSRRPYQVNVLIGGYDKKKNKP 114 (198)
T ss_dssp HHHHHHHHHHHTTSSSCCCEEEEEEEEETTTTEE
T ss_pred HHHHHHHHHHhcccCCCceEEEEEEEEeCCCCCc
Confidence 99999999875322249999999999995 454
No 84
>1ryp_L 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_L 1vsy_L 1z7q_L 3l5q_P 1g65_K* 1g0u_K* 1jd2_K* 2f16_K* 2fak_K* 2fny_K* 2gpl_K* 2zcy_K* 3bdm_K* 3d29_K* 3dy3_K* 3dy4_K* 3e47_K* 3gpj_K* 3gpt_K* 3gpw_K* ...
Probab=99.72 E-value=3.2e-17 Score=141.41 Aligned_cols=109 Identities=20% Similarity=0.310 Sum_probs=101.2
Q ss_pred eeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhcccccccccCCCCCHHHH
Q psy9489 168 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDLHNDGFVLKPKSL 247 (279)
Q Consensus 168 ~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~~ee~~~l~~~~l 247 (279)
+++||++++|||++++|++.++|.++..++.+||++++++++++.+|..+|++.+.+.++.+.+ .++++++.+++++.+
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~-~~~~~~~~~~~v~~l 79 (212)
T 1ryp_L 1 TTTLAFRFQGGIIVAVDSRATAGNWVASQTVKRVIEINPFLLGTMAGGAADCQFWETWLGSQCR-LHELREKERISVAAA 79 (212)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECCBCHHHHHHHHHHHHHHHH-HHHHHHSSCCCHHHH
T ss_pred CcEEEEEeCCEEEEEEcCCcccCCeEecCcccceeeeCCcEEEEccccHHHHHHHHHHHHHHHH-HHHHHcCCCCCHHHH
Confidence 4789999999999999999999999999999999999999999999999999999999999998 678888899999999
Q ss_pred HHHHHHHHhhccCCCCccceEEEEEEEe-CCCC
Q psy9489 248 HSWLTRVLYNRRSQFDPLWINAFVAGMQ-NGEP 279 (279)
Q Consensus 248 a~~isr~lys~r~~~~P~~vs~ii~G~D-~~~p 279 (279)
++++++.+|.+| ..||++++|||||| +++|
T Consensus 80 a~~l~~~~~~~~--~~p~~v~~lvaG~D~~~gp 110 (212)
T 1ryp_L 80 SKILSNLVYQYK--GAGLSMGTMICGYTRKEGP 110 (212)
T ss_dssp HHHHHHHHHHTT--TSCCCBEEEEEEEETTTEE
T ss_pred HHHHHHHHHhhC--CCCceEEEEEEEEeCCCCC
Confidence 999999999877 35999999999999 4444
No 85
>1iru_H 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_N* 3une_N
Probab=99.72 E-value=3.5e-17 Score=140.39 Aligned_cols=108 Identities=21% Similarity=0.222 Sum_probs=100.8
Q ss_pred eeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhcccccccccCCCCCHHHH
Q psy9489 168 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDLHNDGFVLKPKSL 247 (279)
Q Consensus 168 ~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~~ee~~~l~~~~l 247 (279)
+++||++++|||++++|++.+.+.++..++.+||++++++++++.+|..+|++.+.+.++.+.+ .++++++.+++++.+
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~-~~~~~~~~~~~v~~l 79 (205)
T 1iru_H 1 TTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAVADAVTYQLG-FHSIELNEPPLVHTA 79 (205)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHH-HHHHHHTSCCCHHHH
T ss_pred CcEEEEEeCCEEEEEEcCCcccCcEEecCCcCceEEcCCCEEEEcCccHHHHHHHHHHHHHHHH-HHHHHhCCCCCHHHH
Confidence 4789999999999999999999889999999999999999999999999999999999999998 778888899999999
Q ss_pred HHHHHHHHhhccCCCCccceEEEEEEEeC-CCC
Q psy9489 248 HSWLTRVLYNRRSQFDPLWINAFVAGMQN-GEP 279 (279)
Q Consensus 248 a~~isr~lys~r~~~~P~~vs~ii~G~D~-~~p 279 (279)
++.+++.+|.+| +||++++||||||+ ++|
T Consensus 80 a~~l~~~~~~~~---~p~~~~~lvaG~D~~~gp 109 (205)
T 1iru_H 80 ASLFKEMCYRYR---EDLMAGIIIAGWDPQEGG 109 (205)
T ss_dssp HHHHHHHHHHTT---TTCCEEEEEEEEETTTEE
T ss_pred HHHHHHHHHhcC---cCccEEEEEEEEeCCCCC
Confidence 999999999877 29999999999997 444
No 86
>3unf_H Proteasome subunit beta type-10; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_H
Probab=99.71 E-value=4.1e-17 Score=143.09 Aligned_cols=108 Identities=22% Similarity=0.281 Sum_probs=100.8
Q ss_pred eeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhcccccccccCCCCCHHHH
Q psy9489 168 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDLHNDGFVLKPKSL 247 (279)
Q Consensus 168 ~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~~ee~~~l~~~~l 247 (279)
++++|++++|||++++|++.+.+.++..++.+||++++++++++++|..+|++.+.+.++.+.+ .++++++.+++++.+
T Consensus 1 TT~vgi~~kdgVVlaaD~r~t~g~~v~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~-~~~~~~~~~~~v~~l 79 (234)
T 3unf_H 1 TTIAGLVFRDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGVAADTEMTTRMAASKME-LHALSTGREPRVATV 79 (234)
T ss_dssp CEEEEEECSSEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHH-HHHHHHCSCCCHHHH
T ss_pred CeEEEEEeCCEEEEEECCCcccCCEeccCccccEEEecCCEEEEecccHHHHHHHHHHHHHHHH-hhHHhcCCCCCHHHH
Confidence 5789999999999999999999988999999999999999999999999999999999999988 788889999999999
Q ss_pred HHHHHHHHhhccCCCCccceEEEEEEEeCCCC
Q psy9489 248 HSWLTRVLYNRRSQFDPLWINAFVAGMQNGEP 279 (279)
Q Consensus 248 a~~isr~lys~r~~~~P~~vs~ii~G~D~~~p 279 (279)
++.+++.+|.++ +||++++||||||++||
T Consensus 80 a~~l~~~l~~~~---~p~~v~llvaG~D~~gp 108 (234)
T 3unf_H 80 TRILRQTLFRYQ---GHVGASLVVGGVDLNGP 108 (234)
T ss_dssp HHHHHHHHHHTT---TCSCEEEEEEEEETTEE
T ss_pred HHHHHHHHHhcC---CCccEEEEEEEEeCCCC
Confidence 999999998754 59999999999998665
No 87
>1ryp_I 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1g0u_H* 1jd2_H* 1g65_H 1vsy_I 1z7q_I 2f16_H* 2fak_H* 2fny_H* 2gpl_H* 3d29_H* 3dy3_H* 3dy4_H* 3e47_H* 3gpj_H* 3gpt_H* 3gpw_H* 3hye_H* 3l5q_M 3mg0_H* 3mg4_H* ...
Probab=99.71 E-value=5.6e-17 Score=141.03 Aligned_cols=108 Identities=19% Similarity=0.281 Sum_probs=100.8
Q ss_pred eeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhcccccccccCCCCCHHHH
Q psy9489 168 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDLHNDGFVLKPKSL 247 (279)
Q Consensus 168 ~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~~ee~~~l~~~~l 247 (279)
+++||++++|||++++|++.++|.++..++.+||++++++++++.+|..+|++.+.+.++.+.+ .++++++.+++++++
T Consensus 1 TT~vgi~~~dgVvlaaD~r~t~g~~~~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~~~~~~~-~~~~~~~~~~~v~~~ 79 (222)
T 1ryp_I 1 TTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGSNIE-LHSLYTSREPRVVSA 79 (222)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHH-HHHHHHTSCCCHHHH
T ss_pred CeEEEEEECCEEEEEEcCCcccCCeeecCCcccEEEecCCEEEEecccHHHHHHHHHHHHHHHH-HHHHHcCCCCCHHHH
Confidence 5789999999999999999999999999999999999999999999999999999999999998 678888999999999
Q ss_pred HHHHHHHHhhccCCCCccceEEEEEEEeCCCC
Q psy9489 248 HSWLTRVLYNRRSQFDPLWINAFVAGMQNGEP 279 (279)
Q Consensus 248 a~~isr~lys~r~~~~P~~vs~ii~G~D~~~p 279 (279)
++.+++.+|.++ +||++++||||||++||
T Consensus 80 a~~l~~~l~~~~---~p~~v~~lvaG~D~~gp 108 (222)
T 1ryp_I 80 LQMLKQHLFKYQ---GHIGAYLIVAGVDPTGS 108 (222)
T ss_dssp HHHHHHHHHHTT---TCSCEEEEEEEEETTEE
T ss_pred HHHHHHHHhhcC---CCCCeeEEEEEEeCCCC
Confidence 999999998765 69999999999998665
No 88
>1q5q_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4
Probab=99.70 E-value=4.3e-17 Score=142.93 Aligned_cols=109 Identities=16% Similarity=0.256 Sum_probs=100.8
Q ss_pred eeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhcccccccccCCCCCHHHH
Q psy9489 168 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDLHNDGFVLKPKSL 247 (279)
Q Consensus 168 ~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~~ee~~~l~~~~l 247 (279)
+++|||+++|||++++|++.++|.++..++.+||++++++++++.+|..+|++.+.+.++.+.+ .+.++++.+++++.+
T Consensus 1 tT~vgi~~~dgVVlaaD~r~~~g~l~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~-~~~~~~~~~~~v~~l 79 (235)
T 1q5q_H 1 TTIVALTYKGGVLLAGDRRATQGNLIASRDVEKVYVTDEYSAAGIAGTAGIAIELVRLFAVELE-HYEKIEGVPLTFDGK 79 (235)
T ss_dssp CCEEEEECSSCEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHH-HHHHHHSSCCCHHHH
T ss_pred CeEEEEEECCEEEEEECCCCCcCCEEecCCcCcEEEeCCcEEEEcCCcHHHHHHHHHHHHHHHH-HhHHHhCCCCCHHHH
Confidence 5789999999999999999999999999999999999999999999999999999999999998 678888999999999
Q ss_pred HHHHHHHHhhccCC-CCccceEEEEEEEeCC
Q psy9489 248 HSWLTRVLYNRRSQ-FDPLWINAFVAGMQNG 277 (279)
Q Consensus 248 a~~isr~lys~r~~-~~P~~vs~ii~G~D~~ 277 (279)
++.+++.++..+.. ++||+|++||||||++
T Consensus 80 a~~l~~~~~~~~~~~~rp~~v~~lvaG~D~~ 110 (235)
T 1q5q_H 80 ANRLASMVRGNLGAAMQGLAVVPLLVGYDLD 110 (235)
T ss_dssp HHHHHHHHHTTHHHHTTTCCEEEEEEEECTT
T ss_pred HHHHHHHHHHHHHhhhcccceEEEEEEEECC
Confidence 99999999864422 6799999999999975
No 89
>3mi0_A Proteasome subunit alpha; enzyme inhibitors, lactones, proteasome endopeptidase comple mycobacterium tuberculosis, hydrolase; HET: SA6; 2.20A {Mycobacterium tuberculosis} SCOP: d.153.1.4 PDB: 3h6f_A 3krd_A* 3h6i_A* 3mka_A 2fhh_A* 2fhg_A 3hfa_D 3hf9_A 3mfe_D
Probab=99.70 E-value=4.5e-17 Score=143.94 Aligned_cols=118 Identities=16% Similarity=0.209 Sum_probs=101.3
Q ss_pred ccchhhhhcccccccceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhc
Q psy9489 151 QYLNDIVKQKITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKI 230 (279)
Q Consensus 151 ~~l~~~l~~~~~pi~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~ 230 (279)
|...+..++..+++..|+++||++++||||+++|++ .++.+||+++++|++++.+|..+|++.+...++.+.
T Consensus 11 ~~~~~r~EYA~~av~~GtT~vgi~~kdgVVlaadkr--------~~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~~~~~~ 82 (248)
T 3mi0_A 11 QAMRERSELARKGIARAKSVVALAYAGGVLFVAENP--------SRSLQKISELYDRVGFAAAGKFNEFDNLRRGGIQFA 82 (248)
T ss_dssp HHHHHHHHHHHHHHHTSCCEEEEEETTEEEEEEECC--------CSSSCSEEEEETTEEEEEEECHHHHHHHHHHHHHHH
T ss_pred HhcccchHHHHHHHhCCCcEEEEEeCCEEEEEEeCC--------CCCCCCeEEECCCEEEEEccCHHHHHHHHHHHHHHH
Confidence 334455677788999999999999999999999999 357899999999999999999999999999888876
Q ss_pred ccccccccC-CCCCHHHHHHHHHHHH---hhccCCCCccceEEEEEEEeC----CCC
Q psy9489 231 LDDDLHNDG-FVLKPKSLHSWLTRVL---YNRRSQFDPLWINAFVAGMQN----GEP 279 (279)
Q Consensus 231 ~~~~~~ee~-~~l~~~~la~~isr~l---ys~r~~~~P~~vs~ii~G~D~----~~p 279 (279)
+ .+.+.++ .+++++.+++.+++.+ |+++ ++||+|++||||||+ +||
T Consensus 83 ~-l~~~~~~~~~i~v~~la~~l~~~l~q~yt~~--~rP~gv~~liaG~D~~~~~~gp 136 (248)
T 3mi0_A 83 D-TRGYAYDRRDVTGRQLANVYAQTLGTIFTEQ--AKPYEVELCVAEVAHYGETKRP 136 (248)
T ss_dssp H-HHHHHSCGGGCCHHHHHHHHHHHHHHHHHHS--SSCCCEEEEEEECCCTTCCCCC
T ss_pred H-HHHHhcCCCCCCHHHHHHHHHHHHHHHhccC--CCCceEEEEEEEEcCCCCCCCC
Confidence 5 5566666 7899999999999765 6653 789999999999997 566
No 90
>1q5r_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, hydrolase; 3.10A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_H
Probab=99.70 E-value=3.8e-17 Score=147.75 Aligned_cols=116 Identities=16% Similarity=0.226 Sum_probs=105.7
Q ss_pred cccccceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhcccccccccCC
Q psy9489 161 ITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDLHNDGF 240 (279)
Q Consensus 161 ~~pi~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~~ee~~ 240 (279)
.+++..|+++|||+++||||+++|++.++|.++..++.+||++++++++++.+|..+|++.+.+.++.+.+ .+++.++.
T Consensus 59 ~~Av~~GtTiVgIk~kdGVVlAaD~r~t~G~li~~~~~~KI~~I~~~i~~~~aG~~aD~~~l~~~~r~~~~-~y~~~~g~ 137 (294)
T 1q5r_H 59 GDLAPHGTTIVALTYKGGVLLAGDRRATQGNLIASRDVEAVYVTDEYSAAGIAGTAGIAIELVRLFAVELE-HYEKIEGV 137 (294)
T ss_dssp -CCSCBCCCEEEEECSSCEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEEBHHHHHHHHHHHHHHHH-HHHHHHSS
T ss_pred HHHHhcCceEEEEEECCEEEEEEcCccccCceeecCCcceEEEECCcEEEEEeecHHHHHHHHHHHHHHHH-HhhHhhCC
Confidence 35577899999999999999999999999999999999999999999999999999999999999999998 77888899
Q ss_pred CCCHHHHHHHHHHHHhhccC-CCCccceEEEEEEEeCC
Q psy9489 241 VLKPKSLHSWLTRVLYNRRS-QFDPLWINAFVAGMQNG 277 (279)
Q Consensus 241 ~l~~~~la~~isr~lys~r~-~~~P~~vs~ii~G~D~~ 277 (279)
+++++.+++.+++.++..+. .++||+|++||||||++
T Consensus 138 ~isv~~la~~la~~l~~~~~~~~rp~~v~lLvaG~D~~ 175 (294)
T 1q5r_H 138 PLTFDGKANRLASMVRGNLGAAMQGLAVVPLLVGYDLD 175 (294)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHTTTTCEEEEEEEECTT
T ss_pred CCCHHHHHHHHHHHHHHHHhhhcCCcceEEEEEEEeCC
Confidence 99999999999999976432 25799999999999975
No 91
>1iru_I 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_H* 3une_H
Probab=99.70 E-value=8.6e-17 Score=140.97 Aligned_cols=108 Identities=18% Similarity=0.304 Sum_probs=100.6
Q ss_pred eeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhcccccccccCCCCCHHHH
Q psy9489 168 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDLHNDGFVLKPKSL 247 (279)
Q Consensus 168 ~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~~ee~~~l~~~~l 247 (279)
+++||++++|||++++|++.+.|.++..++.+||++++++++++++|..+|++.+.+.++.+.+ .++++++.+++++.+
T Consensus 1 TTivgi~~~dgVVlaaD~r~t~g~~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~-~~~~~~~~~~~v~~l 79 (234)
T 1iru_I 1 TTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLISSNLE-LHSLSTGRLPRVVTA 79 (234)
T ss_dssp CCEEEEEETTEEEEEECCCEESSSBEEESSCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHH-HHHHHHCSCCCHHHH
T ss_pred CeEEEEEeCCEEEEEEcCCcccCceeccCcccceEEecCCEEEEecCcHHHHHHHHHHHHHHHH-HHHHhcCCCCCHHHH
Confidence 5789999999999999999999888888999999999999999999999999999999999988 778888899999999
Q ss_pred HHHHHHHHhhccCCCCccceEEEEEEEeCCCC
Q psy9489 248 HSWLTRVLYNRRSQFDPLWINAFVAGMQNGEP 279 (279)
Q Consensus 248 a~~isr~lys~r~~~~P~~vs~ii~G~D~~~p 279 (279)
++.+++.+|.+| +||++++||||||++||
T Consensus 80 a~~l~~~l~~~~---~~~~v~llvaG~D~~gp 108 (234)
T 1iru_I 80 NRMLKQMLFRYR---GYIGAALVLGGVDVTGP 108 (234)
T ss_dssp HHHHHHHHHHTT---TCSCEEEEEEEECSSCE
T ss_pred HHHHHHHHHhcC---CCCceeEEEEEEcCCCC
Confidence 999999998765 59999999999998665
No 92
>2jay_A Proteasome; hydrolase; 1.99A {Mycobacterium tuberculosis} PDB: 3mka_C 3mi0_C* 2fhg_H* 2fhh_H 3krd_C* 3mfe_G 3hfa_H* 3h6i_C 3h6f_C 3hf9_H 3mfe_H
Probab=99.68 E-value=9.4e-17 Score=145.03 Aligned_cols=113 Identities=19% Similarity=0.253 Sum_probs=93.9
Q ss_pred ccceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhcccccccccCCCCC
Q psy9489 164 LTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDLHNDGFVLK 243 (279)
Q Consensus 164 i~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~~ee~~~l~ 243 (279)
+..|+++||++++||||+++|++.++|.++..++.+||++++++++++.+|..+|++.+.+.++.+.+ .+++.++.+++
T Consensus 54 v~~GtTiVgi~~kdGVVlAaD~r~t~g~li~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~lr~~~~-~y~~~~~~~i~ 132 (291)
T 2jay_A 54 LPHGTTIVALKYPGGVVMAGDRRSTQGNMISGRDVRKVYITDDYTATGIAGTAAVAVEFARLYAVELE-HYEKLEGVPLT 132 (291)
T ss_dssp ----CCEEEEEETTEEEEEECCC--------CCCCCCEEEEETTEEEEEESCHHHHHHHHHHHHHHHH-HHHHHHSSCCC
T ss_pred ccCCcEEEEEEECCEEEEEECCCccCCCeeecCCcccEEEeCCcEEEEEcccHHHHHHHHHHHHHHHH-HhhhhcCCCCC
Confidence 67899999999999999999999999989999999999999999999999999999999999999998 67888899999
Q ss_pred HHHHHHHHHHHHhhccC-CCCccceEEEEEEEeCC
Q psy9489 244 PKSLHSWLTRVLYNRRS-QFDPLWINAFVAGMQNG 277 (279)
Q Consensus 244 ~~~la~~isr~lys~r~-~~~P~~vs~ii~G~D~~ 277 (279)
++.+++.+++.++.++. .++||+|++||||||++
T Consensus 133 v~~la~~la~~l~~~~~~~~rpf~v~~lvaG~D~~ 167 (291)
T 2jay_A 133 FAGKINRLAIMVRGNLAAAMQGLLALPLLAGYDIH 167 (291)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHTCCCEEEEEEECTT
T ss_pred HHHHHHHHHHHHHHhhhhhccccceeEEEEEEeCC
Confidence 99999999999987642 25699999999999974
No 93
>1q5q_A Proteasome alpha-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_A 1q5r_A
Probab=99.67 E-value=1.8e-16 Score=140.90 Aligned_cols=116 Identities=16% Similarity=0.191 Sum_probs=100.3
Q ss_pred chhhhhcccccccceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhccc
Q psy9489 153 LNDIVKQKITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILD 232 (279)
Q Consensus 153 l~~~l~~~~~pi~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~ 232 (279)
+.+.+++..+++..|+++||++++||||+++|++ +++.+||++++++++++.+|..+|++.+.+.++.+++
T Consensus 13 ~~~qvEYA~~av~~Gtt~vgi~~~dgVVlaaD~r--------s~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~~~~~~~- 83 (259)
T 1q5q_A 13 MRDRSELARKGIARGRSVVVLTFRDGVLFVAENP--------STALHKVSELYDRLGFAAVGKYNEFENLRRAGIVHAD- 83 (259)
T ss_dssp HHHHHHHHHHHHHTSCCEEEEECSSEEEEEECCS--------CSSSCSEEEEETTEEEEEEECHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHhcCCcEEEEEeCCEEEEEEecC--------CCCcCcEEEeCCCEEEEEccCHHHHHHHHHHHHHHHH-
Confidence 4456788888999999999999999999999998 3678999999999999999999999999998888777
Q ss_pred ccccccC-CCCCHHHHHHHHHHH---HhhccCCCCccceEEEEEEEe----CCCC
Q psy9489 233 DDLHNDG-FVLKPKSLHSWLTRV---LYNRRSQFDPLWINAFVAGMQ----NGEP 279 (279)
Q Consensus 233 ~~~~ee~-~~l~~~~la~~isr~---lys~r~~~~P~~vs~ii~G~D----~~~p 279 (279)
.+.++.. .+++++.+++.+++. .|+.+ ++||+|++|||||| +++|
T Consensus 84 ~~~~~~~~~~i~v~~la~~l~~~l~q~yt~~--~rP~~v~~lvaG~D~~~~~~gp 136 (259)
T 1q5q_A 84 MRGYSYDRRDVTGRSLANAYAQTLGTIFTEQ--PKPYEVEICVAEVGRVGSPKAP 136 (259)
T ss_dssp HHHHHSCGGGCCHHHHHHHHHHHHHHHHHHS--SSCCCEEEEEEECCCSSCCCCC
T ss_pred HHHHHcCCcCCCHHHHHHHHHHHHHHHhccC--CCCceEEEEEEEEcccCCCCCC
Confidence 4454444 589999999999996 47644 78999999999999 5666
No 94
>1m4y_A ATP-dependent protease HSLV; N-terminal catalytic threonine residue, hydrolase; 2.10A {Thermotoga maritima} SCOP: d.153.1.4
Probab=99.45 E-value=4.5e-13 Score=111.57 Aligned_cols=97 Identities=20% Similarity=0.165 Sum_probs=83.0
Q ss_pred eeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEe-cccEEEEeccChhhHHHHHHHHHhhcccccccccCCCCCHHH
Q psy9489 168 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQI-NKFTILGAGNDYADFQYLNDIVKQKILDDDLHNDGFVLKPKS 246 (279)
Q Consensus 168 ~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i-~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~~ee~~~l~~~~ 246 (279)
++++|++++|+|++++|++.+.|.++.+++.+||+++ +++++++.+|..+|++.+.+.++.+.+ .++.+ .++.
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~Ki~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~-~~~~~-----~~~~ 74 (171)
T 1m4y_A 1 TTILVVRRNGQTVMGGDGQVTFGSTVLKGNARKVRKLGEGKVLAGFAGSVADAMTLFDRFEAKLR-EWGGN-----LTKA 74 (171)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEETTTTEEEEEESCHHHHHHHHHHHHHHHH-HTTTC-----HHHH
T ss_pred CeEEEEEECCEEEEEECCCcccCCEEEeCCcceEEEeCCCCEEEEeCccHHHHHHHHHHHHHHHH-Hhccc-----HHHH
Confidence 5789999999999999999999999999999999999 999999999999999999999999988 45543 2677
Q ss_pred HHHHHHHHHhhccCCCCccceEEEEE
Q psy9489 247 LHSWLTRVLYNRRSQFDPLWINAFVA 272 (279)
Q Consensus 247 la~~isr~lys~r~~~~P~~vs~ii~ 272 (279)
+++..+ .+++.| .++||++++++|
T Consensus 75 ~~~l~~-~~~~~~-~~~~~~~~~lv~ 98 (171)
T 1m4y_A 75 AVELAK-DWRTDR-VLRRLEALLLVA 98 (171)
T ss_dssp HHHHHH-HHHHCT-TGGGCCCEEEEE
T ss_pred HHHHHH-HHHHhC-CCCceEEEEEEE
Confidence 777654 566543 345799999988
No 95
>2z3b_A ATP-dependent protease HSLV; N-terminal nucleophIle hydrolase; 2.50A {Bacillus subtilis} SCOP: d.153.1.4 PDB: 2z3a_A 1yyf_D* 3ty6_A
Probab=99.39 E-value=1.5e-12 Score=109.43 Aligned_cols=100 Identities=14% Similarity=0.156 Sum_probs=83.4
Q ss_pred cceeeEEEEEeCCcEEEEEcCCCccCce-eeecCCCceEEe-cccEEEEeccChhhHHHHHHHHHhhcccccccccCCCC
Q psy9489 165 TTGTSVLGLVFNGGVILAADSAGYYGSM-MRFNDCPRIMQI-NKFTILGAGNDYADFQYLNDIVKQKILDDDLHNDGFVL 242 (279)
Q Consensus 165 ~~g~tvlgi~~~~gvlia~D~~gs~g~l-i~~~~~~kI~~i-~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~~ee~~~l 242 (279)
.+|+|++|++++|+|++|+|++.++|.+ +.+++.+||+++ +++++++.+|..+|++.+.+.++.+.+ .++ + .
T Consensus 3 ~~GtTivgi~~~dgVvlaaD~r~t~g~~~i~~~~~~KI~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~-~y~---g--~ 76 (180)
T 2z3b_A 3 FHATTIFAVQHKGRSAMSGDGQVTFGQAVVMKHTARKVRKLFNGKVLAGFAGSVADAFTLFEKFEAKLE-EYN---G--N 76 (180)
T ss_dssp BCCCCEEEEEETTEEEEEECCCEEETTTEEEESCCCCEEEETTTTEEEEECSCHHHHHHHHHHHHHHHH-HTT---T--C
T ss_pred CCCeEEEEEEECCEEEEEECCCccCCCceEecCCCCcEEEECCCCEEEEeCchHHHHHHHHHHHHHHHH-Hhc---C--C
Confidence 3689999999999999999999999888 999999999999 999999999999999999999999987 444 2 3
Q ss_pred CHHHHHHHHHHHHhhccCCCCccceEEEEE
Q psy9489 243 KPKSLHSWLTRVLYNRRSQFDPLWINAFVA 272 (279)
Q Consensus 243 ~~~~la~~isr~lys~r~~~~P~~vs~ii~ 272 (279)
.++.+++ +.+.++. +..+|||++++|||
T Consensus 77 ~~~~~~~-l~~~~~~-~~~~rp~~~~~lva 104 (180)
T 2z3b_A 77 LKRAAVE-LAKEWRS-DKVLRKLEAMLIVM 104 (180)
T ss_dssp HHHHHHH-HHHHHHH-CTTGGGCCCCEEEE
T ss_pred hHHHHHH-HHHHHHh-hhCcCcceEEEEEE
Confidence 3444443 4444443 33467999999998
No 96
>1g3k_A ATP-dependent protease HSLV; hydrolase; 1.90A {Haemophilus influenzae} SCOP: d.153.1.4 PDB: 1g3i_G 1jjw_A 1kyi_G* 1ofh_G* 1ofi_G* 1e94_A* 1g4a_B* 1g4b_M 1hqy_A* 1ht1_C* 1ht2_A* 1ned_A
Probab=99.39 E-value=2.4e-12 Score=107.52 Aligned_cols=98 Identities=16% Similarity=0.181 Sum_probs=81.6
Q ss_pred eeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEe-cccEEEEeccChhhHHHHHHHHHhhcccccccccCCCCCHHH
Q psy9489 168 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQI-NKFTILGAGNDYADFQYLNDIVKQKILDDDLHNDGFVLKPKS 246 (279)
Q Consensus 168 ~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i-~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~~ee~~~l~~~~ 246 (279)
+|+||++++|+|++++|++.+++.++.+++.+||+++ +++++++.+|..+|++.+.+.++.+.+ .++. ....
T Consensus 1 tT~vgi~~~dgVvlaaD~r~t~g~~i~~~~~~Ki~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~-~~~~------~~~~ 73 (174)
T 1g3k_A 1 TTIVSVRRNGQVVVGGDGQVSLGNTVMKGNARKVRRLYNGKVLAGFAGGTADAFTLFELFERKLE-MHQG------HLLK 73 (174)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEETTTTEEEEEESCHHHHHHHHHHHHHHHH-HTTT------CHHH
T ss_pred CeEEEEEECCEEEEEECCCCccCCeeEeCCCCcEEEECCCCEEEEeCccHHHHHHHHHHHHHHHH-HhcC------cHHH
Confidence 5789999999999999999999989999999999999 999999999999999999999999987 4443 3344
Q ss_pred HHHHHHHHHhhccCCCCccceEEEEEEEe
Q psy9489 247 LHSWLTRVLYNRRSQFDPLWINAFVAGMQ 275 (279)
Q Consensus 247 la~~isr~lys~r~~~~P~~vs~ii~G~D 275 (279)
.+..+++.++.+| .++|+ +++++|+|
T Consensus 74 ~~~~l~~~~~~~~-~~r~~--~~~l~g~d 99 (174)
T 1g3k_A 74 SAVELAKDWRTDR-ALRKL--EAMLIVAD 99 (174)
T ss_dssp HHHHHHHHHHHST-TGGGC--CCEEEEEC
T ss_pred HHHHHHHHHHhcc-CcCcc--eEEEEEEC
Confidence 5556677777655 23465 56777887
No 97
>1ojh_A NBLA; degradation protein, phycobilisome degradation, protein BIND; HET: MSE; 1.80A {Anabaena SP} SCOP: a.214.1.1
Probab=66.75 E-value=5.3 Score=27.13 Aligned_cols=33 Identities=15% Similarity=0.348 Sum_probs=25.2
Q ss_pred hhhhhhhhhhcCCCCCCHHHHHHHHHHHHHHHhccc
Q psy9489 25 IAVPLLRQETEKNPQMSKEEAIALIKTCMDLLYVRD 60 (279)
Q Consensus 25 ~~~~~l~~~~~~~~~~~~~ea~~l~~~c~~~~~~rd 60 (279)
|-+-.+++.+. +||+|||.++|-+-++-+--||
T Consensus 13 F~L~~~~~qv~---~ls~EQaqe~Lve~~rQmMike 45 (65)
T 1ojh_A 13 FSIRSFATQVQ---NMSHDQAKDFLVKLYEQMVVRE 45 (65)
T ss_dssp HHHHHHHHHHH---TCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH---HhCHHHHHHHHHHHHHHHHHHH
Confidence 34556667764 7999999999999887766665
No 98
>2q8v_A NBLA protein; phycobilisome, nutrient starvation, disassembly, bleaching, protein binding; 2.50A {Thermosynechococcus vulcanus} PDB: 2qdo_A
Probab=63.11 E-value=6.9 Score=26.39 Aligned_cols=33 Identities=24% Similarity=0.404 Sum_probs=25.2
Q ss_pred hhhhhhhhhhcCCCCCCHHHHHHHHHHHHHHHhccc
Q psy9489 25 IAVPLLRQETEKNPQMSKEEAIALIKTCMDLLYVRD 60 (279)
Q Consensus 25 ~~~~~l~~~~~~~~~~~~~ea~~l~~~c~~~~~~rd 60 (279)
|-+-.+++.+. +||+|||.++|-+-++-+--||
T Consensus 18 F~L~~~~~qV~---~ls~EQAqe~Lve~~rQmMike 50 (63)
T 2q8v_A 18 FQMRVMEEQVS---AMSLQEARELLLQASRLLMMKD 50 (63)
T ss_dssp HHHHHHHHHHH---TCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH---HhCHHHHHHHHHHHHHHHHHHH
Confidence 44556667764 7999999999999887766654
No 99
>1cq3_A Viral chemokine inhibitor; beta sandwich, cytokine; 1.85A {Cowpox virus} SCOP: b.27.1.1 PDB: 2grk_A 2ffk_A 2fin_A
Probab=62.08 E-value=1.9 Score=35.77 Aligned_cols=30 Identities=27% Similarity=0.605 Sum_probs=21.4
Q ss_pred hhhhhcCC-CCCCHHHHHHHHHHHHHHHhcc
Q psy9489 30 LRQETEKN-PQMSKEEAIALIKTCMDLLYVR 59 (279)
Q Consensus 30 l~~~~~~~-~~~~~~ea~~l~~~c~~~~~~r 59 (279)
+.-+..++ |-||++||.+|+++|.--+.-|
T Consensus 110 ~~Pw~~~~~~sitr~Ealali~~CevsIdIK 140 (233)
T 1cq3_A 110 VSPGQGKDSPAITREEALSMIKDCEMSINIK 140 (233)
T ss_dssp CCTTSSSCCCCEEHHHHHHHHHHCEEEEEEE
T ss_pred cCCCCCCCCcccCHHHHHHHhhhceEEEEEE
Confidence 33444333 4599999999999997666554
No 100
>3cs5_A Phycobilisome degradation protein NBLA; photosynthesis, nutrient stress, bleaching, helix-turn-helix, partial merohedral twinning; 2.20A {Synechococcus SP}
Probab=48.50 E-value=4.9 Score=26.77 Aligned_cols=32 Identities=16% Similarity=0.225 Sum_probs=23.8
Q ss_pred hhhhhhhhhcCCCCCCHHHHHHHHHHHHHHHhccc
Q psy9489 26 AVPLLRQETEKNPQMSKEEAIALIKTCMDLLYVRD 60 (279)
Q Consensus 26 ~~~~l~~~~~~~~~~~~~ea~~l~~~c~~~~~~rd 60 (279)
-+-.+++.+ .+||+|||.++|-+-++-+--||
T Consensus 17 ~L~~~~~qv---~~ls~EQaqe~Lve~~rQmmike 48 (59)
T 3cs5_A 17 DLQKYRQQV---RDISREDLEDLFIEVVRQKMAHE 48 (59)
T ss_dssp HHHHHHHTT---SSSCTGGGTHHHHTHHHHHHHHH
T ss_pred HHHHHHHHH---HHhCHHHHHHHHHHHHHHHHHHH
Confidence 344556665 48999999999998887766555
No 101
>2kc5_A Hydrogenase-2 operon protein HYBE; chaperone; NMR {Escherichia coli}
Probab=43.39 E-value=10 Score=30.45 Aligned_cols=35 Identities=23% Similarity=0.411 Sum_probs=30.4
Q ss_pred cccchhhhhhhhhhhcCCCCCCHHHHHHHHHHHHHHHh
Q psy9489 20 GFGTHIAVPLLRQETEKNPQMSKEEAIALIKTCMDLLY 57 (279)
Q Consensus 20 g~g~~~~~~~l~~~~~~~~~~~~~ea~~l~~~c~~~~~ 57 (279)
|.|.|++-||+---- +-.+.|||+++-+.|++.|.
T Consensus 101 ~~G~y~sCSLfSPm~---~f~~~~~A~~~A~a~l~~ll 135 (162)
T 2kc5_A 101 GVSQYLSCSLMSPLS---HSMSIEEGQRLTDDCARMIL 135 (162)
T ss_dssp TTEEEEEEEEECCCC---TTCCHHHHHHHHHHHHHHHH
T ss_pred CCcceeEccccCCcc---cccCHHHHHHHHHHHHHHHh
Confidence 689999998876653 35899999999999999998
No 102
>2cop_A Acyl-coenzyme A binding domain containing 6; acyl COA binding protein, COA binding protein, lipid binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=39.69 E-value=41 Score=24.98 Aligned_cols=27 Identities=11% Similarity=-0.040 Sum_probs=21.8
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHHHHhc
Q psy9489 32 QETEKNPQMSKEEAIALIKTCMDLLYV 58 (279)
Q Consensus 32 ~~~~~~~~~~~~ea~~l~~~c~~~~~~ 58 (279)
+.|....+||+|||.+..-+.+.+|.-
T Consensus 63 ~AW~~l~gms~eeAm~~YI~lv~~l~~ 89 (109)
T 2cop_A 63 EAWKALGDSSPSQAMQEYIAVVKKLDP 89 (109)
T ss_dssp HHHHSCTTCCHHHHHHHHHHHHHHHCT
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhh
Confidence 346655789999999999888888863
No 103
>1r1p_A GRB2-related adaptor protein 2; SH2, GADS, phosphopeptide, peptide binding protein; HET: PTR; 1.80A {Mus musculus} SCOP: d.93.1.1 PDB: 1r1q_A* 1r1s_A*
Probab=38.76 E-value=10 Score=27.37 Aligned_cols=14 Identities=21% Similarity=0.287 Sum_probs=12.4
Q ss_pred CCCCHHHHHHHHHH
Q psy9489 38 PQMSKEEAIALIKT 51 (279)
Q Consensus 38 ~~~~~~ea~~l~~~ 51 (279)
..|+++||.+||++
T Consensus 14 g~isR~~Ae~lL~~ 27 (100)
T 1r1p_A 14 EGLSRHQAENLLMG 27 (100)
T ss_dssp TTCCHHHHHHHHHT
T ss_pred cCCCHHHHHHHhcC
Confidence 68999999999964
No 104
>2xf7_A GP23.1; viral protein; 1.61A {Bacillus phage SPP1} PDB: 2xf5_A 2xf6_A
Probab=36.90 E-value=14 Score=23.02 Aligned_cols=21 Identities=29% Similarity=0.430 Sum_probs=16.7
Q ss_pred hhhhhhhcCCCCCCHHHHHHHH
Q psy9489 28 PLLRQETEKNPQMSKEEAIALI 49 (279)
Q Consensus 28 ~~l~~~~~~~~~~~~~ea~~l~ 49 (279)
-+||...++ .++|+||+-++.
T Consensus 22 ~~mR~AV~~-G~iTQ~E~D~I~ 42 (51)
T 2xf7_A 22 ELLRVAVNA-GDLTQEEADKIM 42 (51)
T ss_dssp HHHHHHHHH-TSSCHHHHHHHH
T ss_pred HHHHHHHhc-CcccHHHHHHHH
Confidence 468888864 689999998875
No 105
>3s9k_A Tyrosine-protein kinase ITK/TSK; proline isomerization, CIS proline, domain swapped dimer, SH transferase; HET: CIT; 2.35A {Mus musculus} PDB: 2etz_A* 2eu0_A* 1lui_A 1luk_A 1lum_A 1lun_A 2k79_B 2k7a_B
Probab=34.86 E-value=23 Score=26.07 Aligned_cols=15 Identities=20% Similarity=0.321 Sum_probs=13.1
Q ss_pred CCCCHHHHHHHHHHH
Q psy9489 38 PQMSKEEAIALIKTC 52 (279)
Q Consensus 38 ~~~~~~ea~~l~~~c 52 (279)
.+|+++||.+||++.
T Consensus 14 g~isR~~Ae~lL~~~ 28 (118)
T 3s9k_A 14 KSISRDKAEKLLLDT 28 (118)
T ss_dssp TTCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHhc
Confidence 689999999999763
No 106
>2ekx_A Cytoplasmic tyrosine-protein kinase BMX; SH2 domain, phosphotyrosine binding domain, protein tyrosine kinase, signal transduction; NMR {Homo sapiens}
Probab=33.71 E-value=19 Score=26.31 Aligned_cols=15 Identities=13% Similarity=0.297 Sum_probs=13.1
Q ss_pred CCCCHHHHHHHHHHH
Q psy9489 38 PQMSKEEAIALIKTC 52 (279)
Q Consensus 38 ~~~~~~ea~~l~~~c 52 (279)
..|+++||.+||+.+
T Consensus 16 g~isR~~Ae~lL~~~ 30 (110)
T 2ekx_A 16 GNISRSQSEQLLRQK 30 (110)
T ss_dssp CSCCHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHhcc
Confidence 589999999999763
No 107
>3hkz_Y DNA-directed RNA polymerase subunit 13; archaea, metal-binding, nucleotidyltransferase, transcription, transferase, zinc, zinc-finger; 3.40A {Sulfolobus solfataricus}
Probab=32.90 E-value=22 Score=25.55 Aligned_cols=36 Identities=25% Similarity=0.235 Sum_probs=27.2
Q ss_pred hhhhhhcCCCCCCHHHHHHHHHHHHHHHhccccccCCC
Q psy9489 29 LLRQETEKNPQMSKEEAIALIKTCMDLLYVRDARSGAK 66 (279)
Q Consensus 29 ~l~~~~~~~~~~~~~ea~~l~~~c~~~~~~rd~~~~~~ 66 (279)
|.|+... ..+|.|||..+++.--+...+||-|.--|
T Consensus 50 IWdkLl~--gkISIEEAKklFedn~~~y~kk~~k~KAk 85 (104)
T 3hkz_Y 50 IWDNLLN--GKITLEEAKKLFEDNYKEYEKRDSRRKAK 85 (104)
T ss_dssp HHHHTTC--CSSHHHHHHHHHHHHHTTTTCCCCCC---
T ss_pred HHHHHHc--CcccHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 3455554 46999999999999999999998877443
No 108
>4ayb_Q DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_J 4b1o_Q 4b1p_J 2y0s_J 2waq_Q
Probab=31.47 E-value=38 Score=24.28 Aligned_cols=35 Identities=23% Similarity=0.200 Sum_probs=27.3
Q ss_pred hhhhhhcCCCCCCHHHHHHHHHHHHHHHhccccccCC
Q psy9489 29 LLRQETEKNPQMSKEEAIALIKTCMDLLYVRDARSGA 65 (279)
Q Consensus 29 ~l~~~~~~~~~~~~~ea~~l~~~c~~~~~~rd~~~~~ 65 (279)
|.|+... ..+|.|||.+++++--+.--+||-+.--
T Consensus 50 IWd~Ll~--gkISIeEAKK~Fedn~~~yek~d~k~ka 84 (104)
T 4ayb_Q 50 IWDNLLN--GKISVDEAKRLFEDNYKDYEKRDSRRKA 84 (104)
T ss_dssp HHHHHHH--CCSCHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHc--CcccHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 4455554 4699999999999999999999887633
No 109
>2cb8_A Acyl-COA-binding protein; acyl-coenzyme A binding protein, fatty acid, acetylation, alternative splicing, lipid-binding, transport; HET: MYA; 1.4A {Homo sapiens} PDB: 2fj9_A 1aca_A* 1hb6_A 1hb8_A 1nti_A 1nvl_A* 2abd_A 2fdq_A
Probab=31.46 E-value=44 Score=23.70 Aligned_cols=26 Identities=19% Similarity=0.100 Sum_probs=20.0
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHHHHh
Q psy9489 32 QETEKNPQMSKEEAIALIKTCMDLLY 57 (279)
Q Consensus 32 ~~~~~~~~~~~~ea~~l~~~c~~~~~ 57 (279)
+.|+...+||+|||.+.--+.+++|.
T Consensus 57 ~AW~~l~gms~eeA~~~Yi~~v~~l~ 82 (87)
T 2cb8_A 57 DAWNELKGTSKEDAMKAYINKVEELK 82 (87)
T ss_dssp HHHHTTTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 35655578999999988877777764
No 110
>1nrv_A Growth factor receptor-bound protein 10; dimer, signaling protein; 1.65A {Homo sapiens} SCOP: d.93.1.1 PDB: 3m7f_A
Probab=31.44 E-value=26 Score=25.20 Aligned_cols=14 Identities=36% Similarity=0.544 Sum_probs=12.6
Q ss_pred CCCCHHHHHHHHHH
Q psy9489 38 PQMSKEEAIALIKT 51 (279)
Q Consensus 38 ~~~~~~ea~~l~~~ 51 (279)
..||++||.+||++
T Consensus 10 g~isR~~Ae~lL~~ 23 (105)
T 1nrv_A 10 GRISREESHRIIKQ 23 (105)
T ss_dssp TTCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHh
Confidence 58999999999976
No 111
>1jyr_A Growth factor receptor-bound protein 2; receptor binding, regulatory, inhibitor, signaling protein-I complex; HET: PTR; 1.55A {Homo sapiens} SCOP: d.93.1.1 PDB: 1jyq_A* 1jyu_A 1qg1_E* 1x0n_A* 2aob_A* 2aoa_A* 3n7y_A* 1tze_E* 1zfp_E* 3mxc_A* 3mxy_A* 1cj1_A*
Probab=31.12 E-value=22 Score=25.32 Aligned_cols=14 Identities=7% Similarity=0.292 Sum_probs=12.4
Q ss_pred CCCCHHHHHHHHHH
Q psy9489 38 PQMSKEEAIALIKT 51 (279)
Q Consensus 38 ~~~~~~ea~~l~~~ 51 (279)
..|+++||.+||++
T Consensus 8 g~isR~~Ae~lL~~ 21 (96)
T 1jyr_A 8 GKIPRAKAEEMLSK 21 (96)
T ss_dssp CSCCHHHHHHHHHT
T ss_pred cCCCHHHHHHHHhc
Confidence 68999999999965
No 112
>2dm0_A Tyrosine-protein kinase TXK; TEC family kinase, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.09 E-value=27 Score=26.17 Aligned_cols=15 Identities=13% Similarity=0.324 Sum_probs=13.1
Q ss_pred CCCCHHHHHHHHHHH
Q psy9489 38 PQMSKEEAIALIKTC 52 (279)
Q Consensus 38 ~~~~~~ea~~l~~~c 52 (279)
..|+++||.+||+++
T Consensus 21 G~isR~eAe~lL~~~ 35 (125)
T 2dm0_A 21 RNITRNQAEHLLRQE 35 (125)
T ss_dssp CSCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHhhc
Confidence 589999999999764
No 113
>4gwp_D Mediator of RNA polymerase II transcription subun; binding sites, mediator complex, models, molecular, phosphor protein structure; 4.20A {Saccharomyces cerevisiae} PDB: 3rj1_D 4gwq_D
Probab=30.84 E-value=17 Score=27.48 Aligned_cols=19 Identities=11% Similarity=0.497 Sum_probs=17.1
Q ss_pred CCCHHHHHHHHHHHHHHHh
Q psy9489 39 QMSKEEAIALIKTCMDLLY 57 (279)
Q Consensus 39 ~~~~~ea~~l~~~c~~~~~ 57 (279)
.+..|+-.+||++||.++.
T Consensus 98 ~~d~e~le~LL~~~m~eii 116 (121)
T 4gwp_D 98 RFDEKQIEELLDNCIETFV 116 (121)
T ss_dssp CSSCSTHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHh
Confidence 5888899999999999986
No 114
>1ztd_A Hypothetical protein PFU-631545-001; structural genomics, southeast collaboratory for structural genomics, secsg; 2.00A {Pyrococcus furiosus} SCOP: a.149.1.2
Probab=30.71 E-value=22 Score=26.70 Aligned_cols=25 Identities=24% Similarity=0.316 Sum_probs=16.8
Q ss_pred hhhhhhhcCCCCCCHHHHHHHHHHHH
Q psy9489 28 PLLRQETEKNPQMSKEEAIALIKTCM 53 (279)
Q Consensus 28 ~~l~~~~~~~~~~~~~ea~~l~~~c~ 53 (279)
.++-..|-+ ..||.|||+++|++-+
T Consensus 75 A~iAyAWle-G~is~eEaveilk~nl 99 (133)
T 1ztd_A 75 ALIAKAWLM-GLISEREAVEIIKKNL 99 (133)
T ss_dssp HHHHHHHHT-TSSCHHHHHHHHHTTC
T ss_pred HHHHHHHHh-ccccHHHHHHHHHhcC
Confidence 344444531 4699999999998644
No 115
>3pqz_A Growth factor receptor-bound protein 7; SH2, binds phosphotyrosine, tyrosine kinases, cytoplasmic, P binding; 2.41A {Homo sapiens} PDB: 1mw4_A* 2l4k_A* 2qms_A
Probab=29.58 E-value=29 Score=25.47 Aligned_cols=14 Identities=36% Similarity=0.477 Sum_probs=12.7
Q ss_pred CCCCHHHHHHHHHH
Q psy9489 38 PQMSKEEAIALIKT 51 (279)
Q Consensus 38 ~~~~~~ea~~l~~~ 51 (279)
.+|+++||.++|++
T Consensus 19 g~isR~~Ae~lL~~ 32 (117)
T 3pqz_A 19 GRISREESQRLIGQ 32 (117)
T ss_dssp CSCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHhc
Confidence 58999999999976
No 116
>3epy_A Acyl-COA-binding domain-containing protein 7; acyl-COA binding protein, fatty acid, lipid metabolism, structural genomics; HET: COA PLM; 2.00A {Homo sapiens} SCOP: a.11.1.1
Probab=29.23 E-value=50 Score=23.53 Aligned_cols=26 Identities=15% Similarity=0.073 Sum_probs=20.1
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHHHHh
Q psy9489 32 QETEKNPQMSKEEAIALIKTCMDLLY 57 (279)
Q Consensus 32 ~~~~~~~~~~~~ea~~l~~~c~~~~~ 57 (279)
+.|+...+||+|||.+.--+.+++|.
T Consensus 59 ~AW~~l~g~s~eeA~~~Yi~~v~~l~ 84 (89)
T 3epy_A 59 EAWNLKKGLSTEDATSAYISKAKELI 84 (89)
T ss_dssp HHHHTTTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhCCCHHHHHHHHHHHHHHHh
Confidence 35665678999999988877777664
No 117
>3tkz_A Tyrosine-protein phosphatase non-receptor type 11; SH2 domain, protein protein interactions, PTR residues, HYDR peptide complex; HET: PTR; 1.80A {Homo sapiens} PDB: 3tl0_A* 1aya_A* 1ayb_A* 1ayc_A* 1ayd_A
Probab=28.63 E-value=30 Score=25.09 Aligned_cols=15 Identities=33% Similarity=0.386 Sum_probs=12.9
Q ss_pred CCCCHHHHHHHHHHH
Q psy9489 38 PQMSKEEAIALIKTC 52 (279)
Q Consensus 38 ~~~~~~ea~~l~~~c 52 (279)
.+||++||.++|++.
T Consensus 12 g~isr~~Ae~lL~~~ 26 (109)
T 3tkz_A 12 PNITGVEAENLLLTR 26 (109)
T ss_dssp TTCCHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHhcC
Confidence 589999999999753
No 118
>1nkz_B Light-harvesting protein B-800/850, beta chain; light harvesting complex II, trans-membrane helices, rhodopi glucoside; HET: CXM RG1 BOG BCL; 2.00A {Rhodoblastus acidophilus} SCOP: f.3.1.1 PDB: 1kzu_B* 2fkw_B* 1ijd_B*
Probab=28.29 E-value=31 Score=21.12 Aligned_cols=14 Identities=21% Similarity=0.256 Sum_probs=10.8
Q ss_pred CCCHHHHHHHHHHH
Q psy9489 39 QMSKEEAIALIKTC 52 (279)
Q Consensus 39 ~~~~~ea~~l~~~c 52 (279)
.||.|||+++=+-=
T Consensus 2 gLT~~EA~EfH~~~ 15 (41)
T 1nkz_B 2 TLTAEQSEELHKYV 15 (41)
T ss_dssp CCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 58999999876543
No 119
>1d4t_A T cell signal transduction molecule SAP; SH2 domain, tyrosine kinase, signal transduction, peptide recognition, signaling protein; 1.10A {Homo sapiens} SCOP: d.93.1.1 PDB: 1d1z_A 1d4w_A* 1m27_A*
Probab=28.14 E-value=32 Score=24.66 Aligned_cols=14 Identities=21% Similarity=0.323 Sum_probs=12.6
Q ss_pred CCCCHHHHHHHHHH
Q psy9489 38 PQMSKEEAIALIKT 51 (279)
Q Consensus 38 ~~~~~~ea~~l~~~ 51 (279)
..||++||.+||++
T Consensus 9 g~isR~~Ae~lL~~ 22 (104)
T 1d4t_A 9 GKISRETGEKLLLA 22 (104)
T ss_dssp CSCCHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHh
Confidence 58999999999975
No 120
>1hbk_A ACBP, acyl-COA binding protein; fatty acid metabolism; HET: COA MYR; 2.0A {Plasmodium falciparum} SCOP: a.11.1.1
Probab=27.80 E-value=41 Score=23.92 Aligned_cols=25 Identities=8% Similarity=0.137 Sum_probs=19.6
Q ss_pred hhcCCCCCCHHHHHHHHHHHHHHHh
Q psy9489 33 ETEKNPQMSKEEAIALIKTCMDLLY 57 (279)
Q Consensus 33 ~~~~~~~~~~~ea~~l~~~c~~~~~ 57 (279)
.|+...+||+|||.+.--+.+.+|.
T Consensus 60 AW~~l~gms~eeA~~~YI~~v~~l~ 84 (89)
T 1hbk_A 60 AWKSVENLNREDAQKRYVDIVSEIF 84 (89)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHHHHC
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHc
Confidence 4555578999999998888777764
No 121
>1i3z_A EWS/FLI1 activated transcript 2; SH2 domain phosphotyrosine signal transduction lymphocyte, signaling protein; HET: PTR; 2.15A {Mus musculus} SCOP: d.93.1.1
Probab=27.50 E-value=25 Score=25.22 Aligned_cols=14 Identities=29% Similarity=0.299 Sum_probs=12.3
Q ss_pred CCCCHHHHHHHHHH
Q psy9489 38 PQMSKEEAIALIKT 51 (279)
Q Consensus 38 ~~~~~~ea~~l~~~ 51 (279)
..||++||.+||++
T Consensus 8 g~isR~~Ae~lL~~ 21 (103)
T 1i3z_A 8 GCLTKRECEALLLK 21 (103)
T ss_dssp SSCCHHHHHHHHHT
T ss_pred CCCCHHHHHHHHhh
Confidence 58999999999964
No 122
>2cia_A Cytoplasmic protein NCK2; SH2-domain, SH3 domain, phosphorylation, binding specificity; HET: PTR MPD; 1.45A {Homo sapiens} PDB: 1z3k_A 2ci9_A* 2ci8_A*
Probab=27.21 E-value=35 Score=24.50 Aligned_cols=14 Identities=7% Similarity=0.228 Sum_probs=12.3
Q ss_pred CCCCHHHHHHHHHH
Q psy9489 38 PQMSKEEAIALIKT 51 (279)
Q Consensus 38 ~~~~~~ea~~l~~~ 51 (279)
..||++||.+||++
T Consensus 10 g~isR~~Ae~lL~~ 23 (102)
T 2cia_A 10 GNVTRHQAECALNE 23 (102)
T ss_dssp CSCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHhh
Confidence 58999999999954
No 123
>1st7_A ACBP, acyl-COA-binding protein; four helix bundle, transport protein; NMR {Saccharomyces cerevisiae}
Probab=27.00 E-value=42 Score=23.69 Aligned_cols=26 Identities=23% Similarity=0.097 Sum_probs=20.0
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHHHHh
Q psy9489 32 QETEKNPQMSKEEAIALIKTCMDLLY 57 (279)
Q Consensus 32 ~~~~~~~~~~~~ea~~l~~~c~~~~~ 57 (279)
+.|+...+||+|||.+.--+.+.+|.
T Consensus 56 ~AW~~l~gms~eeA~~~YI~~v~~l~ 81 (86)
T 1st7_A 56 EAWENLKGKSQEDAEKEYIALVDQLI 81 (86)
T ss_dssp HHHHTTTTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 35665578999999988877777664
No 124
>2ge9_A Tyrosine-protein kinase BTK; SH2 domain, structure, transferase; NMR {Homo sapiens}
Probab=26.66 E-value=33 Score=25.73 Aligned_cols=15 Identities=27% Similarity=0.390 Sum_probs=13.4
Q ss_pred CCCCHHHHHHHHHHH
Q psy9489 38 PQMSKEEAIALIKTC 52 (279)
Q Consensus 38 ~~~~~~ea~~l~~~c 52 (279)
.+|+++||.+||+++
T Consensus 16 G~isR~eAe~lL~~~ 30 (125)
T 2ge9_A 16 KHMTRSQAEQLLKQE 30 (125)
T ss_dssp TTCCHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHhhc
Confidence 589999999999875
No 125
>2gsb_A RAS GTPase-activating protein 1; GAP, RAS P21 protein activator, P120GAP, rasgap, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.00 E-value=34 Score=25.40 Aligned_cols=15 Identities=40% Similarity=0.499 Sum_probs=13.0
Q ss_pred CCCCHHHHHHHHHHH
Q psy9489 38 PQMSKEEAIALIKTC 52 (279)
Q Consensus 38 ~~~~~~ea~~l~~~c 52 (279)
..|+++||.+||++.
T Consensus 21 G~isR~~Ae~lL~~~ 35 (119)
T 2gsb_A 21 GKISKQEAYNLLMTV 35 (119)
T ss_dssp CSSCHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHhhc
Confidence 589999999999764
No 126
>2wh5_A Acyl-COA-binding domain-containing protein 4; alternative splicing, fatty acid metabolism, lipid transport, lipid binding protein; HET: STE ST9 COA; 2.60A {Homo sapiens}
Probab=25.38 E-value=62 Score=23.89 Aligned_cols=26 Identities=31% Similarity=0.248 Sum_probs=20.6
Q ss_pred hhcCCCCCCHHHHHHHHHHHHHHHhc
Q psy9489 33 ETEKNPQMSKEEAIALIKTCMDLLYV 58 (279)
Q Consensus 33 ~~~~~~~~~~~ea~~l~~~c~~~~~~ 58 (279)
.|+...+||+|||.+..-+-+++|.-
T Consensus 68 AW~~l~gms~eeA~~~YI~~v~~l~~ 93 (106)
T 2wh5_A 68 AWNSLGKMSREEAMSAYITEMKLVAQ 93 (106)
T ss_dssp HHHTTTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 46555789999999988888887764
No 127
>2eob_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 2; SH2, phosphoinositide phospholipase C, PLC-gamma-2, phospholipase C-gamma-2; NMR {Rattus norvegicus}
Probab=25.05 E-value=36 Score=25.52 Aligned_cols=14 Identities=21% Similarity=0.351 Sum_probs=12.6
Q ss_pred CCCCHHHHHHHHHH
Q psy9489 38 PQMSKEEAIALIKT 51 (279)
Q Consensus 38 ~~~~~~ea~~l~~~ 51 (279)
..|+++||.+||++
T Consensus 24 G~isR~eAe~lL~~ 37 (124)
T 2eob_A 24 DRLSRGEAEDMLMR 37 (124)
T ss_dssp SSCCHHHHHHHHHH
T ss_pred cCCCHHHHHHHHhc
Confidence 58999999999976
No 128
>2lbb_A Acyl COA binding protein; protein binding, structural genomi seattle structural genomics center for infectious disease,; NMR {Babesia bovis}
Probab=24.52 E-value=51 Score=23.93 Aligned_cols=25 Identities=24% Similarity=0.080 Sum_probs=19.4
Q ss_pred hhcCCCCCCHHHHHHHHHHHHHHHh
Q psy9489 33 ETEKNPQMSKEEAIALIKTCMDLLY 57 (279)
Q Consensus 33 ~~~~~~~~~~~ea~~l~~~c~~~~~ 57 (279)
.|+...+||+|||.+..-+.++++.
T Consensus 67 AW~~l~gmS~eeAm~~YI~lv~~l~ 91 (96)
T 2lbb_A 67 AWNALRGMSTESAKEAYVKLLDTLA 91 (96)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHHHHC
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHh
Confidence 4444468999999998888877765
No 129
>1hmj_A RPB5, protein (subunit H); RNA polymerase, archaea; NMR {Methanocaldococcus jannaschii} SCOP: d.78.1.1
Probab=24.46 E-value=37 Score=23.80 Aligned_cols=13 Identities=31% Similarity=0.424 Sum_probs=11.6
Q ss_pred CCCHHHHHHHHHH
Q psy9489 39 QMSKEEAIALIKT 51 (279)
Q Consensus 39 ~~~~~ea~~l~~~ 51 (279)
-||+||+.+||++
T Consensus 14 iLs~eEk~~lL~~ 26 (78)
T 1hmj_A 14 IVPKEEVEEILKR 26 (78)
T ss_pred ECCHHHHHHHHHH
Confidence 3999999999976
No 130
>2dlz_A Protein VAV-2; RHO family guanine nucleotide exchange factor, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.11 E-value=32 Score=25.52 Aligned_cols=14 Identities=21% Similarity=0.423 Sum_probs=12.5
Q ss_pred CCCCHHHHHHHHHH
Q psy9489 38 PQMSKEEAIALIKT 51 (279)
Q Consensus 38 ~~~~~~ea~~l~~~ 51 (279)
.+|+++||.+||++
T Consensus 21 G~isR~~Ae~lL~~ 34 (118)
T 2dlz_A 21 GNMERQQTDNLLKS 34 (118)
T ss_dssp ESCCHHHHHHHHHH
T ss_pred cCCCHHHHHHHhcC
Confidence 58999999999975
No 131
>4h62_V Mediator of RNA polymerase II transcription subun; mediator complex, nucleus; HET: MES; 3.00A {Saccharomyces cerevisiae}
Probab=23.99 E-value=64 Score=17.73 Aligned_cols=17 Identities=12% Similarity=0.548 Sum_probs=13.4
Q ss_pred CCHHHHHHHHHHHHHHH
Q psy9489 40 MSKEEAIALIKTCMDLL 56 (279)
Q Consensus 40 ~~~~ea~~l~~~c~~~~ 56 (279)
..+.|-.+||..|++..
T Consensus 9 fdekqieelldncietf 25 (31)
T 4h62_V 9 FDEKQIEELLDNCIETF 25 (31)
T ss_dssp -CHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHH
Confidence 56778899999999764
No 132
>2el8_A Signal-transducing adaptor protein 2; SH2 domain, phosphotyrosine binding domain, protein tyrosine kinase, signal transduction, structural genomics; NMR {Homo sapiens}
Probab=22.75 E-value=48 Score=24.54 Aligned_cols=14 Identities=29% Similarity=0.325 Sum_probs=12.3
Q ss_pred CCCCHHHHHHHHHH
Q psy9489 38 PQMSKEEAIALIKT 51 (279)
Q Consensus 38 ~~~~~~ea~~l~~~ 51 (279)
.+||++||.+||.+
T Consensus 26 G~isR~eAe~lL~~ 39 (118)
T 2el8_A 26 LKVSRLEAQLLLER 39 (118)
T ss_dssp CCCCHHHHHHHHHH
T ss_pred cCCCHHHHHHHHhh
Confidence 58999999999954
No 133
>2lnw_A VAV-2, guanine nucleotide exchange factor VAV2; signaling protein; HET: PTR; NMR {Homo sapiens} PDB: 2lnx_A
Probab=22.73 E-value=46 Score=24.84 Aligned_cols=14 Identities=21% Similarity=0.423 Sum_probs=12.4
Q ss_pred CCCCHHHHHHHHHH
Q psy9489 38 PQMSKEEAIALIKT 51 (279)
Q Consensus 38 ~~~~~~ea~~l~~~ 51 (279)
..||++||.+||+.
T Consensus 27 G~isR~eAe~lL~~ 40 (122)
T 2lnw_A 27 GNMERQQTDNLLKS 40 (122)
T ss_dssp CSCCHHHHHHHHHH
T ss_pred cCCCHHHHHHHhcC
Confidence 58999999999965
No 134
>2hdv_A SH2-B PH domain containing signaling mediator 1 gamma isoform; adapter protein, signaling protein; 2.00A {Mus musculus} PDB: 2hdx_A* 1rpy_A 1rqq_C*
Probab=22.50 E-value=21 Score=26.20 Aligned_cols=15 Identities=20% Similarity=0.175 Sum_probs=13.0
Q ss_pred CCCCHHHHHHHHHHH
Q psy9489 38 PQMSKEEAIALIKTC 52 (279)
Q Consensus 38 ~~~~~~ea~~l~~~c 52 (279)
..|+++||.+||+++
T Consensus 14 G~isR~~Ae~lL~~~ 28 (111)
T 2hdv_A 14 GMLSRLKAAQLVLEG 28 (111)
T ss_dssp EECCHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHc
Confidence 579999999999765
No 135
>1lgh_B LH II, B800/850, light harvesting complex II; bacteriochlorophyll, dexter energy transfer, foerster exciton transfer mechanism; HET: BCL LYC DET HTO; 2.40A {Phaeospirillum molischianum} SCOP: f.3.1.1
Probab=22.37 E-value=41 Score=20.98 Aligned_cols=15 Identities=33% Similarity=0.410 Sum_probs=11.6
Q ss_pred CCCHHHHHHHHHHHH
Q psy9489 39 QMSKEEAIALIKTCM 53 (279)
Q Consensus 39 ~~~~~ea~~l~~~c~ 53 (279)
+||.|||+++-+--|
T Consensus 7 GLT~~EA~EfH~~~~ 21 (45)
T 1lgh_B 7 GLTEEEAIAVHDQFK 21 (45)
T ss_dssp SCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 699999999865433
No 136
>2aug_A Growth factor receptor-bound protein 14; phosphorylation, SH2 domain, signaling protein; 2.30A {Homo sapiens}
Probab=22.23 E-value=36 Score=25.65 Aligned_cols=14 Identities=36% Similarity=0.475 Sum_probs=12.5
Q ss_pred CCCCHHHHHHHHHH
Q psy9489 38 PQMSKEEAIALIKT 51 (279)
Q Consensus 38 ~~~~~~ea~~l~~~ 51 (279)
.+|+++||.+||++
T Consensus 31 G~isR~eAe~lL~~ 44 (126)
T 2aug_A 31 HKISRDEAQRLIIQ 44 (126)
T ss_dssp TTCCHHHHHHHHHT
T ss_pred CCCCHHHHHHHHhc
Confidence 58999999999965
No 137
>2ysx_A Signaling inositol polyphosphate phosphatase SHIP II; SH2 domain, phosphotyrosine binding domain, protein tyrosine kinase, signal transduction; NMR {Homo sapiens}
Probab=21.98 E-value=35 Score=25.23 Aligned_cols=15 Identities=13% Similarity=0.293 Sum_probs=13.0
Q ss_pred CCCCHHHHHHHHHHH
Q psy9489 38 PQMSKEEAIALIKTC 52 (279)
Q Consensus 38 ~~~~~~ea~~l~~~c 52 (279)
..||++||.+||++.
T Consensus 15 G~isR~eAe~lL~~~ 29 (119)
T 2ysx_A 15 GNITRSKAEELLSRT 29 (119)
T ss_dssp ESCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHhhc
Confidence 589999999999763
No 138
>3ov1_A Growth factor receptor-bound protein 2; GRB2 SH2 domain, phosphotyrosine binding, signaling protein, signaling protein-antagonist complex; HET: PTR; 1.60A {Homo sapiens} SCOP: d.93.1.1 PDB: 3imj_A* 3in7_A* 3imd_A* 3kfj_A* 3n8m_A* 3in8_A* 3s8l_A* 3s8n_A* 3s8o_A* 2huy_A* 2h5k_A* 2huw_A* 2h46_E* 3c7i_A* 3n84_A* 1fhs_A 1bm2_A* 1bmb_A* 3ove_A* 1fyr_A* ...
Probab=21.61 E-value=41 Score=24.90 Aligned_cols=14 Identities=7% Similarity=0.292 Sum_probs=12.3
Q ss_pred CCCCHHHHHHHHHH
Q psy9489 38 PQMSKEEAIALIKT 51 (279)
Q Consensus 38 ~~~~~~ea~~l~~~ 51 (279)
.+||++||.+||++
T Consensus 11 G~isR~eAe~lL~~ 24 (117)
T 3ov1_A 11 GKIPRAKAEEMLSK 24 (117)
T ss_dssp CSCCHHHHHHHHHT
T ss_pred CCCCHHHHHHHHhC
Confidence 58999999999965
No 139
>1ka6_A SH2 domain protein 1A; SH2 domain, protein-peptide complex, immune system; HET: PTR; NMR {Homo sapiens} SCOP: d.93.1.1 PDB: 1ka7_A
Probab=21.20 E-value=49 Score=24.83 Aligned_cols=14 Identities=21% Similarity=0.323 Sum_probs=12.5
Q ss_pred CCCCHHHHHHHHHH
Q psy9489 38 PQMSKEEAIALIKT 51 (279)
Q Consensus 38 ~~~~~~ea~~l~~~ 51 (279)
..||++||.+||++
T Consensus 9 G~isR~eAe~lL~~ 22 (128)
T 1ka6_A 9 GKISRETGEKLLLA 22 (128)
T ss_dssp CSCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHhc
Confidence 58999999999975
No 140
>1aot_F FYN protein-tyrosine kinase; SH2 domain, signal transduction, peptide complex, complex (proto-oncogene/early protein); HET: PTR; NMR {Homo sapiens} SCOP: d.93.1.1 PDB: 1aou_F*
Probab=21.13 E-value=42 Score=24.03 Aligned_cols=14 Identities=7% Similarity=0.226 Sum_probs=12.2
Q ss_pred CCCCHHHHHHHHHH
Q psy9489 38 PQMSKEEAIALIKT 51 (279)
Q Consensus 38 ~~~~~~ea~~l~~~ 51 (279)
..|+++||.++|++
T Consensus 10 g~isR~~Ae~lL~~ 23 (106)
T 1aot_F 10 GKLGRKDAERQLLS 23 (106)
T ss_dssp BSCCHHHHHHHHHT
T ss_pred CCCCHHHHHHHHhh
Confidence 58999999999964
No 141
>3fau_A NEDD4-binding protein 2; SMR, small-MUTS related domain, nicking endonuclease, alternative splicing, ATP-binding, coiled coil, cytoplasm, hydrolase; 1.90A {Homo sapiens} SCOP: d.68.8.1
Probab=20.87 E-value=75 Score=21.76 Aligned_cols=19 Identities=11% Similarity=0.179 Sum_probs=15.8
Q ss_pred CCCHHHHHHHHHHHHHHHh
Q psy9489 39 QMSKEEAIALIKTCMDLLY 57 (279)
Q Consensus 39 ~~~~~ea~~l~~~c~~~~~ 57 (279)
.||.+||.+.|++-+....
T Consensus 7 Gl~v~eA~~~l~~~l~~~~ 25 (82)
T 3fau_A 7 GLHVDEALEHLMRVLEKKT 25 (82)
T ss_dssp TSCHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHH
Confidence 5999999999888777654
No 142
>2d9i_A NEDD4-binding protein 2; SMR domain, N4BP2, BCL-3 binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.68.8.1
Probab=20.57 E-value=74 Score=22.55 Aligned_cols=19 Identities=11% Similarity=0.179 Sum_probs=16.3
Q ss_pred CCCHHHHHHHHHHHHHHHh
Q psy9489 39 QMSKEEAIALIKTCMDLLY 57 (279)
Q Consensus 39 ~~~~~ea~~l~~~c~~~~~ 57 (279)
.||.+||++.|++-+....
T Consensus 15 Gl~v~eA~~~L~~~L~~~~ 33 (96)
T 2d9i_A 15 GLHVDEALEHLMRVLEKKT 33 (96)
T ss_dssp TSCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHH
Confidence 5999999999998887654
No 143
>2o2a_A Hypothetical protein GBS1413; structural genomics, PSI-2, protei structure initiative; 2.10A {Streptococcus agalactiae} SCOP: d.33.1.2
Probab=20.39 E-value=47 Score=25.43 Aligned_cols=56 Identities=11% Similarity=0.150 Sum_probs=35.5
Q ss_pred CCeeeccccchhhhhhhhhhhcCCCCCCHHHHHHHHHHHHHHHhcc----ccccCCCCCCC
Q psy9489 14 DKILSFGFGTHIAVPLLRQETEKNPQMSKEEAIALIKTCMDLLYVR----DARSGAKNGPS 70 (279)
Q Consensus 14 ~~~~~~g~g~~~~~~~l~~~~~~~~~~~~~ea~~l~~~c~~~~~~r----d~~~~~~~g~~ 70 (279)
+.|+-+|-=+- ..=|++|++....|++++|...|-+-|+..+..- ---+.|+.|++
T Consensus 64 ~~FviSG~IsQ-iv~i~~r~~~~~sd~~q~ev~~LsrPL~d~i~rLTYEVTeIAlD~PGin 123 (128)
T 2o2a_A 64 DEFVISGVISQ-MAHIQGRLINEPSEFSQDEVENLAAPLLEIVKRLTYEVTEIALDRPGVT 123 (128)
T ss_dssp SSEEEEEEEEE-EEEEETCCCSCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCCC
T ss_pred CcEEEEeeeee-eeeecccccCCcccCCHHHHHHHHHHHHHHHhhheeEEEEEEecCCccc
Confidence 44444443221 2247788887545899999999999999887633 22245554444
No 144
>1rja_A Tyrosine-protein kinase 6; human protein tyrosine kinase-6 (PTK6/BRK), SRC homology 2(S domain, solution structure, backbone dynamics, transferase; NMR {Homo sapiens} SCOP: d.93.1.1
Probab=20.33 E-value=38 Score=24.14 Aligned_cols=14 Identities=21% Similarity=0.354 Sum_probs=12.1
Q ss_pred CCCCHHHHHHHHHH
Q psy9489 38 PQMSKEEAIALIKT 51 (279)
Q Consensus 38 ~~~~~~ea~~l~~~ 51 (279)
..|+++||.++|++
T Consensus 7 g~isR~~Ae~lL~~ 20 (100)
T 1rja_A 7 GCISRSEAVRRLQA 20 (100)
T ss_dssp TTCCHHHHHHHHSS
T ss_pred CCCCHHHHHHHHhc
Confidence 58999999999954
No 145
>2cs0_A Hematopoietic SH2 domain containing; ALX, FLJ14886, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.93.1.1
Probab=20.10 E-value=49 Score=24.46 Aligned_cols=13 Identities=31% Similarity=0.496 Sum_probs=11.7
Q ss_pred CCCCHHHHHHHHH
Q psy9489 38 PQMSKEEAIALIK 50 (279)
Q Consensus 38 ~~~~~~ea~~l~~ 50 (279)
..|+++||.+||+
T Consensus 21 G~isR~~Ae~lL~ 33 (119)
T 2cs0_A 21 GAISREDAENLLE 33 (119)
T ss_dssp SSCCHHHHHHHHH
T ss_pred cCCCHHHHHHHhc
Confidence 5899999999995
Done!