Your job contains 1 sequence.
>psy9489
FLGTVDKLGTAYEDKILSFGFGTHIAVPLLRQETEKNPQMSKEEAIALIKTCMDLLYVRD
ARSGAKNGPSLGKYHDFPNVLPHYFRRSGSFSTPLTTGTSVLGLVFNGGVILAADSAGYY
GSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKITPLTTGTSVLGLVFNGGVI
LAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDLHNDGF
VLKPKSLHSWLTRVLYNRRSQFDPLWINAFVAGMQNGEP
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy9489
(279 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
ZFIN|ZDB-GENE-050417-333 - symbol:psmb4 "proteasome (pros... 373 2.2e-34 1
UNIPROTKB|P28024 - symbol:psmb4 "Proteasome subunit beta ... 371 3.6e-34 1
UNIPROTKB|H9L0U6 - symbol:PSMB4 "Proteasome subunit beta ... 366 1.2e-33 1
UNIPROTKB|Q3T108 - symbol:PSMB4 "Proteasome subunit beta ... 350 6.0e-32 1
UNIPROTKB|F1ST02 - symbol:PSMB4 "Proteasome subunit beta ... 348 9.8e-32 1
UNIPROTKB|P28070 - symbol:PSMB4 "Proteasome subunit beta ... 345 2.0e-31 1
MGI|MGI:1098257 - symbol:Psmb4 "proteasome (prosome, macr... 341 5.4e-31 1
UNIPROTKB|E2RBR6 - symbol:PSMB4 "Proteasome subunit beta ... 340 6.9e-31 1
RGD|61877 - symbol:Psmb4 "proteasome (prosome, macropain)... 333 3.8e-30 1
UNIPROTKB|P34067 - symbol:Psmb4 "Proteasome subunit beta ... 333 3.8e-30 1
UNIPROTKB|D4A640 - symbol:Psmb4 "Proteasome subunit beta ... 331 6.2e-30 1
UNIPROTKB|Q29384 - symbol:PSMB4 "Proteasome subunit beta ... 329 1.0e-29 1
FB|FBgn0250746 - symbol:Prosbeta7 "Proteasome beta7 subun... 295 4.0e-26 1
TAIR|locus:2010693 - symbol:PBG1 "20S proteasome beta sub... 267 3.8e-23 1
CGD|CAL0000170 - symbol:orf19.4230 species:5476 "Candida ... 262 1.3e-22 1
POMBASE|SPBC577.10 - symbol:SPBC577.10 "20S proteasome co... 262 1.3e-22 1
DICTYBASE|DDB_G0273909 - symbol:psmB4-2 "20S proteasome s... 243 1.3e-20 1
DICTYBASE|DDB_G0273163 - symbol:psmB4-1 "proteasome subun... 243 1.3e-20 1
ASPGD|ASPL0000028212 - symbol:AN10708 species:162425 "Eme... 237 5.7e-20 1
SGD|S000001946 - symbol:PRE4 "Beta 7 subunit of the 20S p... 235 9.2e-20 1
WB|WBGene00003953 - symbol:pbs-7 species:6239 "Caenorhabd... 208 6.7e-17 1
>ZFIN|ZDB-GENE-050417-333 [details] [associations]
symbol:psmb4 "proteasome (prosome, macropain)
subunit, beta type, 4" species:7955 "Danio rerio" [GO:0004175
"endopeptidase activity" evidence=IEA] [GO:0004298 "threonine-type
endopeptidase activity" evidence=IEA] [GO:0051603 "proteolysis
involved in cellular protein catabolic process" evidence=IEA]
[GO:0005839 "proteasome core complex" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0000502
"proteasome complex" evidence=IEA] [GO:0006508 "proteolysis"
evidence=IEA] [GO:0008233 "peptidase activity" evidence=IEA]
InterPro:IPR001353 InterPro:IPR016050 InterPro:IPR016295
InterPro:IPR023333 Pfam:PF00227 PIRSF:PIRSF001213 PROSITE:PS00854
PROSITE:PS51476 ZFIN:ZDB-GENE-050417-333 GO:GO:0005634
GO:GO:0005737 GO:GO:0051603 GO:GO:0005839 GO:GO:0004298
EMBL:BX571688 eggNOG:COG0638 HOGENOM:HOG000181719 OMA:RIMRVND
GeneTree:ENSGT00390000000698 HOVERGEN:HBG018194 OrthoDB:EOG4F1X3R
IPI:IPI00506848 UniGene:Dr.76312 SMR:A8E7N8
Ensembl:ENSDART00000131715 Uniprot:A8E7N8
Length = 256
Score = 373 (136.4 bits), Expect = 2.2e-34, P = 2.2e-34
Identities = 65/122 (53%), Positives = 88/122 (72%)
Query: 157 VKQKITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDY 216
+K + P+ TGTSVLG+ F GGVI+AAD G YGS+ RF + R+M++N TILGA DY
Sbjct: 35 IKHTLNPMVTGTSVLGVKFKGGVIIAADMLGSYGSLARFRNISRLMKVNNSTILGASGDY 94
Query: 217 ADFQYLNDIVKQKILDDDLHNDGFVLKPKSLHSWLTRVLYNRRSQFDPLWINAFVAGMQN 276
AD+QYL I++Q ++D++L DG PK++HSWLTRV+YNRRS+ +PLW + G N
Sbjct: 95 ADYQYLKQIIEQMVIDEELLGDGHSYTPKAIHSWLTRVMYNRRSKMNPLWNTVVIGGFYN 154
Query: 277 GE 278
GE
Sbjct: 155 GE 156
Score = 231 (86.4 bits), Expect = 2.5e-19, P = 2.5e-19
Identities = 46/98 (46%), Positives = 65/98 (66%)
Query: 66 KNGPSLGKYHDFP--NVLPHYFRRSGSFSTPLTTGTSVLGLVFNGGVILAADSAGYYGSM 123
+NGP G+++ FP + P + + P+ TGTSVLG+ F GGVI+AAD G YGS+
Sbjct: 12 ENGPKPGQFYSFPGSSAAPACGPIKHTLN-PMVTGTSVLGVKFKGGVIIAADMLGSYGSL 70
Query: 124 MRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKI 161
RF + R+M++N TILGA DYAD+QYL I++Q +
Sbjct: 71 ARFRNISRLMKVNNSTILGASGDYADYQYLKQIIEQMV 108
Score = 168 (64.2 bits), Expect = 5.0e-11, P = 5.0e-11
Identities = 33/63 (52%), Positives = 45/63 (71%)
Query: 1 FLGTVDKLGTAYEDKILSFGFGTHIAVPLLRQETEKNPQMSKEEAIALIKTCMDLLYVRD 60
FLG VDKLG AYE ++ GFG ++A PL+R+ E +++KEEA LI+ C+ +LY RD
Sbjct: 158 FLGYVDKLGVAYEAPTVATGFGAYLAQPLMREVIENKEEITKEEARELIERCLKVLYYRD 217
Query: 61 ARS 63
ARS
Sbjct: 218 ARS 220
>UNIPROTKB|P28024 [details] [associations]
symbol:psmb4 "Proteasome subunit beta type-4" species:8355
"Xenopus laevis" [GO:0005839 "proteasome core complex"
evidence=ISS] InterPro:IPR001353 InterPro:IPR016050
InterPro:IPR016295 InterPro:IPR023333 Pfam:PF00227
PIRSF:PIRSF001213 PROSITE:PS00854 PROSITE:PS51476 GO:GO:0005634
GO:GO:0005737 GO:GO:0051603 GO:GO:0005839 GO:GO:0004298
MEROPS:T01.987 HOVERGEN:HBG018194 EMBL:X62709 PIR:S17568
UniGene:Xl.4728 ProteinModelPortal:P28024 SMR:P28024 PRIDE:P28024
Xenbase:XB-GENE-6253413 Uniprot:P28024
Length = 242
Score = 371 (135.7 bits), Expect = 3.6e-34, P = 3.6e-34
Identities = 65/122 (53%), Positives = 89/122 (72%)
Query: 157 VKQKITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDY 216
V+ + P+ TGTSVLG+ F+GGVI+AAD G YGS+ RF + RIM++N+ TILGA DY
Sbjct: 21 VRHTLNPMVTGTSVLGVKFDGGVIIAADMLGSYGSLARFRNISRIMKVNENTILGASGDY 80
Query: 217 ADFQYLNDIVKQKILDDDLHNDGFVLKPKSLHSWLTRVLYNRRSQFDPLWINAFVAGMQN 276
AD+QYL ++ Q ++D++L DG PK++HSWLTRV+YNRRS+ +PLW + G N
Sbjct: 81 ADYQYLKQVIDQMVIDEELVGDGHNYSPKAIHSWLTRVMYNRRSKMNPLWNTVVIGGFYN 140
Query: 277 GE 278
GE
Sbjct: 141 GE 142
Score = 223 (83.6 bits), Expect = 1.7e-18, P = 1.7e-18
Identities = 46/94 (48%), Positives = 62/94 (65%)
Query: 68 GPSLGKYHDFPNVLPHYFRRSGSFSTPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFN 127
G + G+ H FP P R + P+ TGTSVLG+ F+GGVI+AAD G YGS+ RF
Sbjct: 6 GTAPGELHCFPGAGP--VRHT---LNPMVTGTSVLGVKFDGGVIIAADMLGSYGSLARFR 60
Query: 128 DCPRIMQINKFTILGAGNDYADFQYLNDIVKQKI 161
+ RIM++N+ TILGA DYAD+QYL ++ Q +
Sbjct: 61 NISRIMKVNENTILGASGDYADYQYLKQVIDQMV 94
Score = 178 (67.7 bits), Expect = 1.1e-13, P = 1.1e-13
Identities = 36/63 (57%), Positives = 44/63 (69%)
Query: 1 FLGTVDKLGTAYEDKILSFGFGTHIAVPLLRQETEKNPQMSKEEAIALIKTCMDLLYVRD 60
FLG VDKLG AYE ++ GFG ++A PLLR+ TE +SKEEA L+ CM +LY RD
Sbjct: 144 FLGYVDKLGVAYEAPTIATGFGAYLAQPLLREVTENKATLSKEEARQLVDRCMKVLYYRD 203
Query: 61 ARS 63
ARS
Sbjct: 204 ARS 206
>UNIPROTKB|H9L0U6 [details] [associations]
symbol:PSMB4 "Proteasome subunit beta type" species:9031
"Gallus gallus" [GO:0051603 "proteolysis involved in cellular
protein catabolic process" evidence=IEA] [GO:0004298
"threonine-type endopeptidase activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0001530 "lipopolysaccharide binding" evidence=IEA] [GO:0002862
"negative regulation of inflammatory response to antigenic
stimulus" evidence=IEA] [GO:0005839 "proteasome core complex"
evidence=IEA] InterPro:IPR001353 InterPro:IPR016050
InterPro:IPR016295 InterPro:IPR023333 Pfam:PF00227
PIRSF:PIRSF001213 PROSITE:PS00854 PROSITE:PS51476 GO:GO:0005634
GO:GO:0005737 GO:GO:0051603 GO:GO:0005839 GO:GO:0004298 KO:K02736
OMA:RIMRVND CTD:5692 GeneTree:ENSGT00390000000698 EMBL:AADN02010469
RefSeq:XP_427542.3 Ensembl:ENSGALT00000029152 GeneID:429986
KEGG:gga:429986 Uniprot:H9L0U6
Length = 258
Score = 366 (133.9 bits), Expect = 1.2e-33, P = 1.2e-33
Identities = 62/118 (52%), Positives = 85/118 (72%)
Query: 161 ITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQ 220
+TP+ TGTSVLG+ F GG+++AAD G YGS+ RF R++++N T+LGA DYADFQ
Sbjct: 41 LTPMVTGTSVLGVKFEGGIVIAADMMGSYGSLARFRSISRLLRVNDSTVLGASGDYADFQ 100
Query: 221 YLNDIVKQKILDDDLHNDGFVLKPKSLHSWLTRVLYNRRSQFDPLWINAFVAGMQNGE 278
YL I+ Q ++D++L DG PK++HSWLTRV+YNRRS+ +PLW + G NGE
Sbjct: 101 YLTQIINQMVIDEELLGDGHSYSPKAIHSWLTRVMYNRRSKINPLWNTVVIGGFYNGE 158
Score = 213 (80.0 bits), Expect = 2.0e-17, P = 2.0e-17
Identities = 37/69 (53%), Positives = 50/69 (72%)
Query: 93 TPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQY 152
TP+ TGTSVLG+ F GG+++AAD G YGS+ RF R++++N T+LGA DYADFQY
Sbjct: 42 TPMVTGTSVLGVKFEGGIVIAADMMGSYGSLARFRSISRLLRVNDSTVLGASGDYADFQY 101
Query: 153 LNDIVKQKI 161
L I+ Q +
Sbjct: 102 LTQIINQMV 110
Score = 170 (64.9 bits), Expect = 2.8e-11, P = 2.8e-11
Identities = 35/63 (55%), Positives = 43/63 (68%)
Query: 1 FLGTVDKLGTAYEDKILSFGFGTHIAVPLLRQETEKNPQMSKEEAIALIKTCMDLLYVRD 60
FLG VD LG AYE L+ G+G +A PL+R+ EK P + KEEA LI+ CM +LY RD
Sbjct: 160 FLGYVDMLGVAYEAPTLATGYGAALAQPLMREVLEKKPSLIKEEARDLIERCMKILYYRD 219
Query: 61 ARS 63
ARS
Sbjct: 220 ARS 222
>UNIPROTKB|Q3T108 [details] [associations]
symbol:PSMB4 "Proteasome subunit beta type-4" species:9913
"Bos taurus" [GO:0005839 "proteasome core complex" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0002862 "negative regulation of inflammatory
response to antigenic stimulus" evidence=IEA] [GO:0001530
"lipopolysaccharide binding" evidence=IEA] [GO:0004298
"threonine-type endopeptidase activity" evidence=IEA] [GO:0051603
"proteolysis involved in cellular protein catabolic process"
evidence=IEA] InterPro:IPR001353 InterPro:IPR016050
InterPro:IPR016295 InterPro:IPR023333 Pfam:PF00227
PIRSF:PIRSF001213 PROSITE:PS00854 PROSITE:PS51476 GO:GO:0005634
GO:GO:0005737 GO:GO:0002862 GO:GO:0001530 GO:GO:0051603
GO:GO:0005839 GO:GO:0004298 eggNOG:COG0638 PDB:1IRU PDBsum:1IRU
MEROPS:T01.987 HOGENOM:HOG000181719 KO:K02736 OMA:RIMRVND
EMBL:BC102182 IPI:IPI00697757 RefSeq:NP_001029438.1
UniGene:Bt.53288 ProteinModelPortal:Q3T108 SMR:Q3T108 STRING:Q3T108
PRIDE:Q3T108 Ensembl:ENSBTAT00000028364 GeneID:506203
KEGG:bta:506203 CTD:5692 GeneTree:ENSGT00390000000698
HOVERGEN:HBG018194 InParanoid:Q3T108 OrthoDB:EOG4F1X3R
EvolutionaryTrace:Q3T108 NextBio:20867498 Uniprot:Q3T108
Length = 264
Score = 350 (128.3 bits), Expect = 6.0e-32, P = 6.0e-32
Identities = 65/137 (47%), Positives = 91/137 (66%)
Query: 142 GAGNDYADFQYLNDIVKQKITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRI 201
G+ D Y + I + + P+ TGTSVLGL F GGV++AAD G YGS+ RF + RI
Sbjct: 29 GSSVDPVSALYGSPITRTQ-NPMVTGTSVLGLKFEGGVVIAADMLGSYGSLARFRNISRI 87
Query: 202 MQINKFTILGAGNDYADFQYLNDIVKQKILDDDLHNDGFVLKPKSLHSWLTRVLYNRRSQ 261
M++N T+LGA DYADFQYL ++ Q ++D++L DG PK++HSWLTR +Y+RRS+
Sbjct: 88 MRVNNSTMLGASGDYADFQYLKQVLGQMVIDEELLGDGHSYSPKAIHSWLTRAMYSRRSK 147
Query: 262 FDPLWINAFVAGMQNGE 278
+PLW + G +GE
Sbjct: 148 MNPLWNTMVIGGYADGE 164
Score = 216 (81.1 bits), Expect = 9.5e-18, P = 9.5e-18
Identities = 49/111 (44%), Positives = 67/111 (60%)
Query: 60 DARSGA-KNGPSLGKYHDFP-----NVLPH---YFRRSGSFSTPLTTGTSVLGLVFNGGV 110
++RSG GP+ G+++ P +V P Y P+ TGTSVLGL F GGV
Sbjct: 6 ESRSGLWAGGPAPGQFYRIPPTPGSSVDPVSALYGSPITRTQNPMVTGTSVLGLKFEGGV 65
Query: 111 ILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKI 161
++AAD G YGS+ RF + RIM++N T+LGA DYADFQYL ++ Q +
Sbjct: 66 VIAADMLGSYGSLARFRNISRIMRVNNSTMLGASGDYADFQYLKQVLGQMV 116
Score = 167 (63.8 bits), Expect = 8.6e-11, P = 8.6e-11
Identities = 34/63 (53%), Positives = 44/63 (69%)
Query: 1 FLGTVDKLGTAYEDKILSFGFGTHIAVPLLRQETEKNPQMSKEEAIALIKTCMDLLYVRD 60
FLG VD LG AYE L+ G+G ++A PLLR+ EK P +S+ EA L++ CM +LY RD
Sbjct: 166 FLGYVDMLGVAYEAPSLATGYGAYLAQPLLREVLEKQPVLSQTEARELVERCMRVLYYRD 225
Query: 61 ARS 63
ARS
Sbjct: 226 ARS 228
>UNIPROTKB|F1ST02 [details] [associations]
symbol:PSMB4 "Proteasome subunit beta type" species:9823
"Sus scrofa" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005839 "proteasome core complex"
evidence=IEA] [GO:0002862 "negative regulation of inflammatory
response to antigenic stimulus" evidence=IEA] [GO:0001530
"lipopolysaccharide binding" evidence=IEA] [GO:0004298
"threonine-type endopeptidase activity" evidence=IEA] [GO:0051603
"proteolysis involved in cellular protein catabolic process"
evidence=IEA] InterPro:IPR001353 InterPro:IPR016050
InterPro:IPR016295 InterPro:IPR023333 Pfam:PF00227
PIRSF:PIRSF001213 PROSITE:PS00854 PROSITE:PS51476 GO:GO:0005634
GO:GO:0005737 GO:GO:0002862 GO:GO:0001530 GO:GO:0051603
GO:GO:0005839 GO:GO:0004298 KO:K02736 OMA:RIMRVND CTD:5692
GeneTree:ENSGT00390000000698 EMBL:CU179724 RefSeq:NP_001231384.1
UniGene:Ssc.53698 Ensembl:ENSSSCT00000007257 GeneID:100153923
KEGG:ssc:100153923 Uniprot:F1ST02
Length = 264
Score = 348 (127.6 bits), Expect = 9.8e-32, P = 9.8e-32
Identities = 64/133 (48%), Positives = 90/133 (67%)
Query: 146 DYADFQYLNDIVKQKITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQIN 205
D A Y + I + + P+ TGTSVLG+ F GGV++AAD G YGS+ RF + RIM++N
Sbjct: 33 DPASVLYGSPITRTQ-NPMVTGTSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVN 91
Query: 206 KFTILGAGNDYADFQYLNDIVKQKILDDDLHNDGFVLKPKSLHSWLTRVLYNRRSQFDPL 265
T+LGA DYADFQYL ++ Q ++D++L DG PK++HSWLTR +Y+RRS+ +PL
Sbjct: 92 NSTMLGASGDYADFQYLKQVLGQMVIDEELLGDGHSYSPKAIHSWLTRAMYSRRSKMNPL 151
Query: 266 WINAFVAGMQNGE 278
W + G +GE
Sbjct: 152 WNTMVIGGYADGE 164
Score = 214 (80.4 bits), Expect = 1.6e-17, P = 1.6e-17
Identities = 48/113 (42%), Positives = 70/113 (61%)
Query: 58 VRDARSGA-KNGPSLGKYHDFP----NVLPHYFRRSGSFST----PLTTGTSVLGLVFNG 108
+ ++RSG GP+ G+++ P +++ GS T P+ TGTSVLG+ F G
Sbjct: 4 ILESRSGHWAGGPAPGQFYRIPPTPGSIVDPASVLYGSPITRTQNPMVTGTSVLGVKFEG 63
Query: 109 GVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKI 161
GV++AAD G YGS+ RF + RIM++N T+LGA DYADFQYL ++ Q +
Sbjct: 64 GVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGASGDYADFQYLKQVLGQMV 116
Score = 167 (63.8 bits), Expect = 8.6e-11, P = 8.6e-11
Identities = 34/63 (53%), Positives = 44/63 (69%)
Query: 1 FLGTVDKLGTAYEDKILSFGFGTHIAVPLLRQETEKNPQMSKEEAIALIKTCMDLLYVRD 60
FLG VD LG AYE L+ G+G ++A PLLR+ EK P +S+ EA L++ CM +LY RD
Sbjct: 166 FLGYVDMLGVAYEAPSLATGYGAYLAQPLLREVLEKQPVLSQAEARELVERCMRVLYYRD 225
Query: 61 ARS 63
ARS
Sbjct: 226 ARS 228
>UNIPROTKB|P28070 [details] [associations]
symbol:PSMB4 "Proteasome subunit beta type-4" species:9606
"Homo sapiens" [GO:0004298 "threonine-type endopeptidase activity"
evidence=IEA] [GO:0019048 "virus-host interaction" evidence=IEA]
[GO:0001530 "lipopolysaccharide binding" evidence=IEA] [GO:0002862
"negative regulation of inflammatory response to antigenic
stimulus" evidence=IEA] [GO:0005634 "nucleus" evidence=TAS]
[GO:0005839 "proteasome core complex" evidence=ISS] [GO:0000502
"proteasome complex" evidence=TAS] [GO:0000075 "cell cycle
checkpoint" evidence=TAS] [GO:0000082 "G1/S transition of mitotic
cell cycle" evidence=TAS] [GO:0000084 "S phase of mitotic cell
cycle" evidence=TAS] [GO:0000209 "protein polyubiquitination"
evidence=TAS] [GO:0000216 "M/G1 transition of mitotic cell cycle"
evidence=TAS] [GO:0000278 "mitotic cell cycle" evidence=TAS]
[GO:0002474 "antigen processing and presentation of peptide antigen
via MHC class I" evidence=TAS] [GO:0002479 "antigen processing and
presentation of exogenous peptide antigen via MHC class I,
TAP-dependent" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0005829 "cytosol" evidence=TAS] [GO:0006521
"regulation of cellular amino acid metabolic process" evidence=TAS]
[GO:0006915 "apoptotic process" evidence=TAS] [GO:0006977 "DNA
damage response, signal transduction by p53 class mediator
resulting in cell cycle arrest" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0016032 "viral reproduction"
evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
[GO:0016071 "mRNA metabolic process" evidence=TAS] [GO:0031145
"anaphase-promoting complex-dependent proteasomal
ubiquitin-dependent protein catabolic process" evidence=TAS]
[GO:0034641 "cellular nitrogen compound metabolic process"
evidence=TAS] [GO:0042590 "antigen processing and presentation of
exogenous peptide antigen via MHC class I" evidence=TAS]
[GO:0042981 "regulation of apoptotic process" evidence=TAS]
[GO:0044281 "small molecule metabolic process" evidence=TAS]
[GO:0051436 "negative regulation of ubiquitin-protein ligase
activity involved in mitotic cell cycle" evidence=TAS] [GO:0051437
"positive regulation of ubiquitin-protein ligase activity involved
in mitotic cell cycle" evidence=TAS] [GO:0051439 "regulation of
ubiquitin-protein ligase activity involved in mitotic cell cycle"
evidence=TAS] Reactome:REACT_13505 Reactome:REACT_578
Reactome:REACT_71 Reactome:REACT_21257 Reactome:REACT_6850
Reactome:REACT_111217 InterPro:IPR001353 InterPro:IPR016050
InterPro:IPR016295 InterPro:IPR023333 Pfam:PF00227
PIRSF:PIRSF001213 PROSITE:PS00854 PROSITE:PS51476 GO:GO:0005829
Reactome:REACT_111102 Reactome:REACT_116125 Reactome:REACT_6900
GO:GO:0006915 GO:GO:0010467 GO:GO:0016071 Reactome:REACT_115566
GO:GO:0019048 GO:GO:0005654 GO:GO:0002479 GO:GO:0016032
Reactome:REACT_21300 GO:GO:0006977 GO:GO:0042981 GO:GO:0002862
GO:GO:0044281 GO:GO:0000082 GO:GO:0051436 GO:GO:0000216
GO:GO:0000209 GO:GO:0000084 EMBL:CH471121 GO:GO:0031145
GO:GO:0051437 GO:GO:0006521 GO:GO:0001530 Reactome:REACT_383
GO:GO:0005839 GO:GO:0004298 EMBL:AL589764 eggNOG:COG0638
MEROPS:T01.987 HOGENOM:HOG000181719 KO:K02736 OMA:RIMRVND CTD:5692
HOVERGEN:HBG018194 OrthoDB:EOG4F1X3R EMBL:D26600 EMBL:AK313825
EMBL:CR456820 EMBL:BT006917 EMBL:S71381 IPI:IPI00555956 PIR:S08186
PIR:S45719 PIR:S50147 RefSeq:NP_002787.2 UniGene:Hs.89545
ProteinModelPortal:P28070 SMR:P28070 IntAct:P28070
MINT:MINT-1192686 STRING:P28070 PhosphoSite:P28070 DMDM:116242733
DOSAC-COBS-2DPAGE:P28070 OGP:P28070 REPRODUCTION-2DPAGE:IPI00555956
SWISS-2DPAGE:P28070 PaxDb:P28070 PeptideAtlas:P28070 PRIDE:P28070
DNASU:5692 Ensembl:ENST00000290541 GeneID:5692 KEGG:hsa:5692
UCSC:uc001eyc.1 GeneCards:GC01P151372 HGNC:HGNC:9541 HPA:HPA006700
MIM:602177 neXtProt:NX_P28070 PharmGKB:PA33886 InParanoid:P28070
PhylomeDB:P28070 ChiTaRS:PSMB4 GenomeRNAi:5692 NextBio:22110
Bgee:P28070 CleanEx:HS_PSMB4 Genevestigator:P28070
GermOnline:ENSG00000159377 Uniprot:P28070
Length = 264
Score = 345 (126.5 bits), Expect = 2.0e-31, P = 2.0e-31
Identities = 63/133 (47%), Positives = 89/133 (66%)
Query: 146 DYADFQYLNDIVKQKITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQIN 205
D A Y I + + P+ TGTSVLG+ F GGV++AAD G YGS+ RF + RIM++N
Sbjct: 33 DPASALYRGPITRTQ-NPMVTGTSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVN 91
Query: 206 KFTILGAGNDYADFQYLNDIVKQKILDDDLHNDGFVLKPKSLHSWLTRVLYNRRSQFDPL 265
T+LGA DYADFQYL ++ Q ++D++L DG P+++HSWLTR +Y+RRS+ +PL
Sbjct: 92 NSTMLGASGDYADFQYLKQVLGQMVIDEELLGDGHSYSPRAIHSWLTRAMYSRRSKMNPL 151
Query: 266 WINAFVAGMQNGE 278
W + G +GE
Sbjct: 152 WNTMVIGGYADGE 164
Score = 217 (81.4 bits), Expect = 7.5e-18, P = 7.5e-18
Identities = 48/111 (43%), Positives = 66/111 (59%)
Query: 61 ARSGA-KNGPSLGKYHDFPNVLPHYFRRSGSF---------STPLTTGTSVLGLVFNGGV 110
+RSG GP+ G+++ P+ P F S P+ TGTSVLG+ F GGV
Sbjct: 7 SRSGLWAGGPAPGQFYRIPST-PDSFMDPASALYRGPITRTQNPMVTGTSVLGVKFEGGV 65
Query: 111 ILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKI 161
++AAD G YGS+ RF + RIM++N T+LGA DYADFQYL ++ Q +
Sbjct: 66 VIAADMLGSYGSLARFRNISRIMRVNNSTMLGASGDYADFQYLKQVLGQMV 116
Score = 166 (63.5 bits), Expect = 1.1e-10, P = 1.1e-10
Identities = 34/63 (53%), Positives = 44/63 (69%)
Query: 1 FLGTVDKLGTAYEDKILSFGFGTHIAVPLLRQETEKNPQMSKEEAIALIKTCMDLLYVRD 60
FLG VD LG AYE L+ G+G ++A PLLR+ EK P +S+ EA L++ CM +LY RD
Sbjct: 166 FLGYVDMLGVAYEAPSLATGYGAYLAQPLLREVLEKQPVLSQTEARDLVERCMRVLYYRD 225
Query: 61 ARS 63
ARS
Sbjct: 226 ARS 228
>MGI|MGI:1098257 [details] [associations]
symbol:Psmb4 "proteasome (prosome, macropain) subunit, beta
type 4" species:10090 "Mus musculus" [GO:0000502 "proteasome
complex" evidence=IEA] [GO:0001530 "lipopolysaccharide binding"
evidence=IDA] [GO:0002862 "negative regulation of inflammatory
response to antigenic stimulus" evidence=IMP] [GO:0004175
"endopeptidase activity" evidence=IEA] [GO:0004298 "threonine-type
endopeptidase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005839
"proteasome core complex" evidence=IDA] [GO:0006508 "proteolysis"
evidence=IEA] [GO:0008233 "peptidase activity" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0051603
"proteolysis involved in cellular protein catabolic process"
evidence=IEA] InterPro:IPR001353 InterPro:IPR016050
InterPro:IPR016295 InterPro:IPR023333 Pfam:PF00227
PIRSF:PIRSF001213 PROSITE:PS00854 PROSITE:PS51476 MGI:MGI:1098257
GO:GO:0005829 GO:GO:0005634 GO:GO:0002862 Reactome:REACT_102124
GO:GO:0001530 GO:GO:0051603 GO:GO:0005839 GO:GO:0004298
eggNOG:COG0638 PDB:3UNB PDB:3UNE PDB:3UNF PDB:3UNH PDBsum:3UNB
PDBsum:3UNE PDBsum:3UNF PDBsum:3UNH MEROPS:T01.987 KO:K02736
OMA:RIMRVND CTD:5692 GeneTree:ENSGT00390000000698
HOVERGEN:HBG018194 OrthoDB:EOG4F1X3R ChiTaRS:PSMB4 EMBL:U65636
EMBL:AK077448 EMBL:AK137044 EMBL:AK156624 EMBL:AK168265
EMBL:AK168340 EMBL:BC008241 EMBL:M74556 IPI:IPI00129512
RefSeq:NP_032971.2 UniGene:Mm.368 ProteinModelPortal:P99026
SMR:P99026 IntAct:P99026 STRING:P99026 PhosphoSite:P99026
REPRODUCTION-2DPAGE:P99026 SWISS-2DPAGE:P99026 PaxDb:P99026
PRIDE:P99026 Ensembl:ENSMUST00000005923 GeneID:19172 KEGG:mmu:19172
UCSC:uc008qhe.2 InParanoid:P99026 NextBio:295846 Bgee:P99026
Genevestigator:P99026 GermOnline:ENSMUSG00000005779 Uniprot:P99026
Length = 264
Score = 341 (125.1 bits), Expect = 5.4e-31, P = 5.4e-31
Identities = 59/116 (50%), Positives = 84/116 (72%)
Query: 163 PLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYL 222
P+ TGTSVLG+ F+GGV++AAD G YGS+ RF + RIM++N T+LGA DYADFQYL
Sbjct: 49 PMVTGTSVLGVKFDGGVVIAADMLGSYGSLARFRNISRIMRVNDSTMLGASGDYADFQYL 108
Query: 223 NDIVKQKILDDDLHNDGFVLKPKSLHSWLTRVLYNRRSQFDPLWINAFVAGMQNGE 278
++ Q ++D++L DG P+++HSWLTR +Y+RRS+ +PLW + G +GE
Sbjct: 109 KQVLGQMVIDEELLGDGHSYSPRAIHSWLTRAMYSRRSKMNPLWNTMVIGGYADGE 164
Score = 209 (78.6 bits), Expect = 5.3e-17, P = 5.3e-17
Identities = 38/68 (55%), Positives = 51/68 (75%)
Query: 94 PLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYL 153
P+ TGTSVLG+ F+GGV++AAD G YGS+ RF + RIM++N T+LGA DYADFQYL
Sbjct: 49 PMVTGTSVLGVKFDGGVVIAADMLGSYGSLARFRNISRIMRVNDSTMLGASGDYADFQYL 108
Query: 154 NDIVKQKI 161
++ Q +
Sbjct: 109 KQVLGQMV 116
Score = 167 (63.8 bits), Expect = 8.6e-11, P = 8.6e-11
Identities = 34/63 (53%), Positives = 44/63 (69%)
Query: 1 FLGTVDKLGTAYEDKILSFGFGTHIAVPLLRQETEKNPQMSKEEAIALIKTCMDLLYVRD 60
FLG VD LG AYE L+ G+G ++A PLLR+ EK P +S+ EA L++ CM +LY RD
Sbjct: 166 FLGYVDMLGVAYEAPSLATGYGAYLAQPLLREVLEKQPVLSQTEARELVERCMRVLYYRD 225
Query: 61 ARS 63
ARS
Sbjct: 226 ARS 228
>UNIPROTKB|E2RBR6 [details] [associations]
symbol:PSMB4 "Proteasome subunit beta type" species:9615
"Canis lupus familiaris" [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005839 "proteasome core
complex" evidence=IEA] [GO:0002862 "negative regulation of
inflammatory response to antigenic stimulus" evidence=IEA]
[GO:0001530 "lipopolysaccharide binding" evidence=IEA] [GO:0004298
"threonine-type endopeptidase activity" evidence=IEA] [GO:0051603
"proteolysis involved in cellular protein catabolic process"
evidence=IEA] InterPro:IPR001353 InterPro:IPR016050
InterPro:IPR016295 InterPro:IPR023333 Pfam:PF00227
PIRSF:PIRSF001213 PROSITE:PS00854 PROSITE:PS51476 GO:GO:0005634
GO:GO:0005737 GO:GO:0002862 GO:GO:0001530 GO:GO:0051603
GO:GO:0005839 GO:GO:0004298 KO:K02736 OMA:RIMRVND CTD:5692
GeneTree:ENSGT00390000000698 EMBL:AAEX03011056 RefSeq:XP_533057.3
Ensembl:ENSCAFT00000020153 GeneID:475848 KEGG:cfa:475848
NextBio:20851613 Uniprot:E2RBR6
Length = 264
Score = 340 (124.7 bits), Expect = 6.9e-31, P = 6.9e-31
Identities = 59/116 (50%), Positives = 83/116 (71%)
Query: 163 PLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYL 222
P+ TGTSVLG+ F GGV++AAD G YGS+ RF + RIM++N T+LGA DYADFQYL
Sbjct: 49 PMVTGTSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVNDSTMLGASGDYADFQYL 108
Query: 223 NDIVKQKILDDDLHNDGFVLKPKSLHSWLTRVLYNRRSQFDPLWINAFVAGMQNGE 278
++ Q ++D++L DG P+++HSWLTR +Y+RRS+ +PLW + G +GE
Sbjct: 109 KQVLGQMVIDEELLGDGHSYSPRAIHSWLTRAMYSRRSKMNPLWNTMVIGGYADGE 164
Score = 216 (81.1 bits), Expect = 9.5e-18, P = 9.5e-18
Identities = 45/102 (44%), Positives = 64/102 (62%)
Query: 68 GPSLGKYHDFP-----NVLPHYFRRSGSFS---TPLTTGTSVLGLVFNGGVILAADSAGY 119
GP+ G+++ P +V P + G + P+ TGTSVLG+ F GGV++AAD G
Sbjct: 15 GPAPGQFYHIPPSSVASVEPAFSPYGGPVTRTQNPMVTGTSVLGVKFEGGVVIAADMLGS 74
Query: 120 YGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKI 161
YGS+ RF + RIM++N T+LGA DYADFQYL ++ Q +
Sbjct: 75 YGSLARFRNISRIMRVNDSTMLGASGDYADFQYLKQVLGQMV 116
Score = 167 (63.8 bits), Expect = 8.6e-11, P = 8.6e-11
Identities = 34/63 (53%), Positives = 44/63 (69%)
Query: 1 FLGTVDKLGTAYEDKILSFGFGTHIAVPLLRQETEKNPQMSKEEAIALIKTCMDLLYVRD 60
FLG VD LG AYE L+ G+G ++A PLLR+ EK P +S+ EA L++ CM +LY RD
Sbjct: 166 FLGYVDMLGVAYEAPSLATGYGAYLAQPLLREVLEKQPVLSQTEARELVERCMRVLYYRD 225
Query: 61 ARS 63
ARS
Sbjct: 226 ARS 228
>RGD|61877 [details] [associations]
symbol:Psmb4 "proteasome (prosome, macropain) subunit, beta type
4" species:10116 "Rattus norvegicus" [GO:0001530 "lipopolysaccharide
binding" evidence=IEA;ISO] [GO:0002862 "negative regulation of
inflammatory response to antigenic stimulus" evidence=IEA;ISO]
[GO:0004298 "threonine-type endopeptidase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005839 "proteasome core complex"
evidence=IEA;ISO;ISS] [GO:0051603 "proteolysis involved in cellular
protein catabolic process" evidence=IEA] InterPro:IPR001353
InterPro:IPR016050 InterPro:IPR016295 InterPro:IPR023333
Pfam:PF00227 PIRSF:PIRSF001213 PROSITE:PS00854 PROSITE:PS51476
RGD:61877 GO:GO:0005634 GO:GO:0005737 GO:GO:0002862 GO:GO:0001530
GO:GO:0051603 GO:GO:0005839 GO:GO:0004298 eggNOG:COG0638
MEROPS:T01.987 HOGENOM:HOG000181719 KO:K02736 CTD:5692
HOVERGEN:HBG018194 OrthoDB:EOG4F1X3R EMBL:S82190 EMBL:L17127
IPI:IPI00191505 PIR:S09084 PIR:S32507 RefSeq:NP_113817.1
UniGene:Rn.6169 ProteinModelPortal:P34067 SMR:P34067 IntAct:P34067
STRING:P34067 PhosphoSite:P34067 World-2DPAGE:0004:P34067
PRIDE:P34067 GeneID:58854 KEGG:rno:58854 UCSC:RGD:61877
InParanoid:P34067 NextBio:611445 ArrayExpress:P34067
Genevestigator:P34067 GermOnline:ENSRNOG00000020979 Uniprot:P34067
Length = 263
Score = 333 (122.3 bits), Expect = 3.8e-30, P = 3.8e-30
Identities = 58/116 (50%), Positives = 82/116 (70%)
Query: 163 PLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYL 222
P+ TGTSVLG+ F+ GV++AAD G YGS+ RF + RIM++N T+LGA DYADFQYL
Sbjct: 48 PMVTGTSVLGVKFDCGVVIAADMLGSYGSLARFRNISRIMRVNDSTMLGASGDYADFQYL 107
Query: 223 NDIVKQKILDDDLHNDGFVLKPKSLHSWLTRVLYNRRSQFDPLWINAFVAGMQNGE 278
++ Q ++D++L DG P+++HSWLTR +Y+RRS+ +PLW + G GE
Sbjct: 108 KQVLGQMVIDEELFGDGHSYSPRAIHSWLTRAMYSRRSKMNPLWNTKVIGGYAGGE 163
Score = 200 (75.5 bits), Expect = 4.7e-16, P = 4.7e-16
Identities = 37/68 (54%), Positives = 50/68 (73%)
Query: 94 PLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYL 153
P+ TGTSVLG+ F+ GV++AAD G YGS+ RF + RIM++N T+LGA DYADFQYL
Sbjct: 48 PMVTGTSVLGVKFDCGVVIAADMLGSYGSLARFRNISRIMRVNDSTMLGASGDYADFQYL 107
Query: 154 NDIVKQKI 161
++ Q +
Sbjct: 108 KQVLGQMV 115
Score = 167 (63.8 bits), Expect = 8.3e-11, P = 8.3e-11
Identities = 34/63 (53%), Positives = 44/63 (69%)
Query: 1 FLGTVDKLGTAYEDKILSFGFGTHIAVPLLRQETEKNPQMSKEEAIALIKTCMDLLYVRD 60
FLG VD LG AYE L+ G+G ++A PLLR+ EK P +S+ EA L++ CM +LY RD
Sbjct: 165 FLGYVDMLGVAYEAPSLATGYGAYLAQPLLREVLEKQPVLSQTEARELVERCMRVLYYRD 224
Query: 61 ARS 63
ARS
Sbjct: 225 ARS 227
>UNIPROTKB|P34067 [details] [associations]
symbol:Psmb4 "Proteasome subunit beta type-4" species:10116
"Rattus norvegicus" [GO:0004298 "threonine-type endopeptidase
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0051603 "proteolysis
involved in cellular protein catabolic process" evidence=IEA]
InterPro:IPR001353 InterPro:IPR016050 InterPro:IPR016295
InterPro:IPR023333 Pfam:PF00227 PIRSF:PIRSF001213 PROSITE:PS00854
PROSITE:PS51476 RGD:61877 GO:GO:0005634 GO:GO:0005737 GO:GO:0002862
GO:GO:0001530 GO:GO:0051603 GO:GO:0005839 GO:GO:0004298
eggNOG:COG0638 MEROPS:T01.987 HOGENOM:HOG000181719 KO:K02736
CTD:5692 HOVERGEN:HBG018194 OrthoDB:EOG4F1X3R EMBL:S82190
EMBL:L17127 IPI:IPI00191505 PIR:S09084 PIR:S32507
RefSeq:NP_113817.1 UniGene:Rn.6169 ProteinModelPortal:P34067
SMR:P34067 IntAct:P34067 STRING:P34067 PhosphoSite:P34067
World-2DPAGE:0004:P34067 PRIDE:P34067 GeneID:58854 KEGG:rno:58854
UCSC:RGD:61877 InParanoid:P34067 NextBio:611445 ArrayExpress:P34067
Genevestigator:P34067 GermOnline:ENSRNOG00000020979 Uniprot:P34067
Length = 263
Score = 333 (122.3 bits), Expect = 3.8e-30, P = 3.8e-30
Identities = 58/116 (50%), Positives = 82/116 (70%)
Query: 163 PLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYL 222
P+ TGTSVLG+ F+ GV++AAD G YGS+ RF + RIM++N T+LGA DYADFQYL
Sbjct: 48 PMVTGTSVLGVKFDCGVVIAADMLGSYGSLARFRNISRIMRVNDSTMLGASGDYADFQYL 107
Query: 223 NDIVKQKILDDDLHNDGFVLKPKSLHSWLTRVLYNRRSQFDPLWINAFVAGMQNGE 278
++ Q ++D++L DG P+++HSWLTR +Y+RRS+ +PLW + G GE
Sbjct: 108 KQVLGQMVIDEELFGDGHSYSPRAIHSWLTRAMYSRRSKMNPLWNTKVIGGYAGGE 163
Score = 200 (75.5 bits), Expect = 4.7e-16, P = 4.7e-16
Identities = 37/68 (54%), Positives = 50/68 (73%)
Query: 94 PLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYL 153
P+ TGTSVLG+ F+ GV++AAD G YGS+ RF + RIM++N T+LGA DYADFQYL
Sbjct: 48 PMVTGTSVLGVKFDCGVVIAADMLGSYGSLARFRNISRIMRVNDSTMLGASGDYADFQYL 107
Query: 154 NDIVKQKI 161
++ Q +
Sbjct: 108 KQVLGQMV 115
Score = 167 (63.8 bits), Expect = 8.3e-11, P = 8.3e-11
Identities = 34/63 (53%), Positives = 44/63 (69%)
Query: 1 FLGTVDKLGTAYEDKILSFGFGTHIAVPLLRQETEKNPQMSKEEAIALIKTCMDLLYVRD 60
FLG VD LG AYE L+ G+G ++A PLLR+ EK P +S+ EA L++ CM +LY RD
Sbjct: 165 FLGYVDMLGVAYEAPSLATGYGAYLAQPLLREVLEKQPVLSQTEARELVERCMRVLYYRD 224
Query: 61 ARS 63
ARS
Sbjct: 225 ARS 227
>UNIPROTKB|D4A640 [details] [associations]
symbol:Psmb4 "Proteasome subunit beta type" species:10116
"Rattus norvegicus" [GO:0004298 "threonine-type endopeptidase
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005839 "proteasome core
complex" evidence=IEA] [GO:0051603 "proteolysis involved in
cellular protein catabolic process" evidence=IEA]
InterPro:IPR001353 InterPro:IPR016050 InterPro:IPR016295
InterPro:IPR023333 Pfam:PF00227 PIRSF:PIRSF001213 PROSITE:PS00854
PROSITE:PS51476 RGD:61877 GO:GO:0005634 GO:GO:0005737 GO:GO:0051603
GO:GO:0005839 GO:GO:0004298 EMBL:AC130969 IPI:IPI00949842
PRIDE:D4A640 Ensembl:ENSRNOT00000067192 ArrayExpress:D4A640
Uniprot:D4A640
Length = 232
Score = 331 (121.6 bits), Expect = 6.2e-30, P = 6.2e-30
Identities = 58/116 (50%), Positives = 82/116 (70%)
Query: 163 PLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYL 222
P+ TGTSVLG+ F+ GV++AAD G YGS+ RF + RIM++N T+LGA DYADFQYL
Sbjct: 17 PMVTGTSVLGVKFDCGVVIAADMLGSYGSLARFRNISRIMRVNDSTMLGASGDYADFQYL 76
Query: 223 NDIVKQKILDDDLHNDGFVLKPKSLHSWLTRVLYNRRSQFDPLWINAFVAGMQNGE 278
++ Q ++D++L DG P+++HSWLTR +Y+RRS+ +PLW + G GE
Sbjct: 77 KQVLGQMVIDEELLGDGHSYSPRAIHSWLTRAMYSRRSKMNPLWNTMVIGGYAGGE 132
Score = 200 (75.5 bits), Expect = 4.7e-16, P = 4.7e-16
Identities = 37/68 (54%), Positives = 50/68 (73%)
Query: 94 PLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYL 153
P+ TGTSVLG+ F+ GV++AAD G YGS+ RF + RIM++N T+LGA DYADFQYL
Sbjct: 17 PMVTGTSVLGVKFDCGVVIAADMLGSYGSLARFRNISRIMRVNDSTMLGASGDYADFQYL 76
Query: 154 NDIVKQKI 161
++ Q +
Sbjct: 77 KQVLGQMV 84
Score = 167 (63.8 bits), Expect = 1.2e-11, P = 1.2e-11
Identities = 34/63 (53%), Positives = 44/63 (69%)
Query: 1 FLGTVDKLGTAYEDKILSFGFGTHIAVPLLRQETEKNPQMSKEEAIALIKTCMDLLYVRD 60
FLG VD LG AYE L+ G+G ++A PLLR+ EK P +S+ EA L++ CM +LY RD
Sbjct: 134 FLGYVDMLGVAYEAPSLATGYGAYLAQPLLREVLEKQPVLSQTEARELVERCMRVLYYRD 193
Query: 61 ARS 63
ARS
Sbjct: 194 ARS 196
>UNIPROTKB|Q29384 [details] [associations]
symbol:PSMB4 "Proteasome subunit beta type-4" species:9823
"Sus scrofa" [GO:0005839 "proteasome core complex" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0004298 "threonine-type endopeptidase activity"
evidence=IEA] [GO:0051603 "proteolysis involved in cellular protein
catabolic process" evidence=IEA] InterPro:IPR001353
InterPro:IPR016050 InterPro:IPR023333 Pfam:PF00227 PROSITE:PS00854
PROSITE:PS51476 GO:GO:0005634 GO:GO:0005737 GO:GO:0051603
GO:GO:0005839 GO:GO:0004298 eggNOG:COG0638 MEROPS:T01.987
HOGENOM:HOG000181719 HOVERGEN:HBG018194 OrthoDB:EOG4F1X3R
EMBL:F14598 ProteinModelPortal:Q29384 SMR:Q29384 STRING:Q29384
PRIDE:Q29384 Uniprot:Q29384
Length = 154
Score = 329 (120.9 bits), Expect = 1.0e-29, P = 1.0e-29
Identities = 57/104 (54%), Positives = 77/104 (74%)
Query: 163 PLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYL 222
P+ TGTSVLG+ F GGV++AAD G YGS+ RF + RIM++N T+LGA DYADFQYL
Sbjct: 49 PMVTGTSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGASGDYADFQYL 108
Query: 223 NDIVKQKILDDDLHNDGFVLKPKSLHSWLTRVLYNRRSQFDPLW 266
++ Q ++D++L DG PK++HSWLTR +YNRR + +PLW
Sbjct: 109 KQVLGQMVIDEELLGDGHSYSPKAIHSWLTRAMYNRRFKMNPLW 152
Score = 215 (80.7 bits), Expect = 1.2e-17, P = 1.2e-17
Identities = 48/113 (42%), Positives = 70/113 (61%)
Query: 58 VRDARSGA-KNGPSLGKYHDFP----NVLPHYFRRSGSFST----PLTTGTSVLGLVFNG 108
+ ++RSG GP+ G+++ P +++ GS T P+ TGTSVLG+ F G
Sbjct: 4 ILESRSGHWAGGPAPGQFYRIPPTPGSIVDPXSVLYGSPITRTQNPMVTGTSVLGVKFEG 63
Query: 109 GVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKI 161
GV++AAD G YGS+ RF + RIM++N T+LGA DYADFQYL ++ Q +
Sbjct: 64 GVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGASGDYADFQYLKQVLGQMV 116
>FB|FBgn0250746 [details] [associations]
symbol:Prosbeta7 "Proteasome beta7 subunit" species:7227
"Drosophila melanogaster" [GO:0005839 "proteasome core complex"
evidence=ISS;NAS] [GO:0004175 "endopeptidase activity"
evidence=ISS;NAS] [GO:0006508 "proteolysis" evidence=NAS]
[GO:0005634 "nucleus" evidence=NAS] [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=NAS]
[GO:0005737 "cytoplasm" evidence=NAS] [GO:0051603 "proteolysis
involved in cellular protein catabolic process" evidence=IEA]
[GO:0004298 "threonine-type endopeptidase activity" evidence=IEA]
[GO:0009987 "cellular process" evidence=IMP] [GO:0000022 "mitotic
spindle elongation" evidence=IMP] [GO:0008283 "cell proliferation"
evidence=IMP] [GO:0007052 "mitotic spindle organization"
evidence=IMP] [GO:0051297 "centrosome organization" evidence=IMP]
[GO:0006974 "response to DNA damage stimulus" evidence=IMP]
[GO:0022008 "neurogenesis" evidence=IMP] InterPro:IPR001353
InterPro:IPR016050 InterPro:IPR016295 InterPro:IPR023333
Pfam:PF00227 PIRSF:PIRSF001213 PROSITE:PS00854 PROSITE:PS51476
EMBL:AE014297 GO:GO:0005634 GO:GO:0005737 GO:GO:0022008
GO:GO:0051297 GO:GO:0008283 GO:GO:0006974 GO:GO:0000022
GO:GO:0051603 GO:GO:0005839 GO:GO:0004298 eggNOG:COG0638
MEROPS:T01.987 KO:K02736 OMA:RIMRVND GeneTree:ENSGT00390000000698
EMBL:AY118936 RefSeq:NP_649529.1 RefSeq:NP_730922.1
UniGene:Dm.11642 ProteinModelPortal:Q9VNA5 SMR:Q9VNA5
DIP:DIP-19164N IntAct:Q9VNA5 MINT:MINT-924269 STRING:Q9VNA5
PaxDb:Q9VNA5 PRIDE:Q9VNA5 EnsemblMetazoa:FBtr0078805
EnsemblMetazoa:FBtr0078806 GeneID:40639 KEGG:dme:Dmel_CG12000
CTD:40639 FlyBase:FBgn0250746 InParanoid:Q9VNA5 OrthoDB:EOG4Q575B
PhylomeDB:Q9VNA5 GenomeRNAi:40639 NextBio:819792 Bgee:Q9VNA5
GermOnline:CG12000 Uniprot:Q9VNA5
Length = 268
Score = 295 (108.9 bits), Expect = 4.0e-26, P = 4.0e-26
Identities = 57/123 (46%), Positives = 82/123 (66%)
Query: 158 KQKITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYA 217
K TTGTSVLG+ ++ GV+LAAD+ YGSM R+ + R+ ++NK +LG D+A
Sbjct: 48 KHSTASSTTGTSVLGIRYDSGVMLAADTLVSYGSMARYQNIERVFKVNKNILLGGSGDFA 107
Query: 218 DFQYLNDIVKQKILDDDLHNDGFVLKPKSLHSWLTRVLYNRRSQFDPLWINAFVAGMQN- 276
D Q + + QK+++D +D +KPKSL SW+TRVLYNRRS+ +PL+I+ V G+ N
Sbjct: 108 DIQSIKRNIDQKMIEDQCCDDNIEMKPKSLASWMTRVLYNRRSRMNPLYIDVVVGGVDNE 167
Query: 277 GEP 279
G P
Sbjct: 168 GTP 170
Score = 172 (65.6 bits), Expect = 2.0e-11, P = 2.0e-11
Identities = 40/107 (37%), Positives = 62/107 (57%)
Query: 66 KNGPSLGKYHDF-----P-NVLPHYFRRSGSFSTP-----LTTGTSVLGLVFNGGVILAA 114
+NGP+ G++++F P LP G + T TTGTSVLG+ ++ GV+LAA
Sbjct: 14 QNGPAPGEFYNFTGGQTPVQQLPRELTTMGPYGTKHSTASSTTGTSVLGIRYDSGVMLAA 73
Query: 115 DSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKI 161
D+ YGSM R+ + R+ ++NK +LG D+AD Q + + QK+
Sbjct: 74 DTLVSYGSMARYQNIERVFKVNKNILLGGSGDFADIQSIKRNIDQKM 120
Score = 152 (58.6 bits), Expect = 7.6e-09, P = 7.6e-09
Identities = 28/63 (44%), Positives = 43/63 (68%)
Query: 1 FLGTVDKLGTAYEDKILSFGFGTHIAVPLLRQETEKNPQMSKEEAIALIKTCMDLLYVRD 60
+L VD G +YED +++ GF H+AVPL+R++ K+ + EA LI+TCM++LY RD
Sbjct: 171 YLANVDLRGRSYEDYVVATGFARHLAVPLVREKKPKDRDFTAVEASELIRTCMEVLYYRD 230
Query: 61 ARS 63
R+
Sbjct: 231 TRN 233
>TAIR|locus:2010693 [details] [associations]
symbol:PBG1 "20S proteasome beta subunit G1" species:3702
"Arabidopsis thaliana" [GO:0004175 "endopeptidase activity"
evidence=IEA] [GO:0004298 "threonine-type endopeptidase activity"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM] [GO:0005839
"proteasome core complex" evidence=IEA;TAS] [GO:0008233 "peptidase
activity" evidence=ISS] [GO:0051603 "proteolysis involved in
cellular protein catabolic process" evidence=IEA] [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=TAS]
[GO:0022626 "cytosolic ribosome" evidence=IDA] [GO:0046686
"response to cadmium ion" evidence=IEP;RCA] [GO:0009651 "response
to salt stress" evidence=IEP;RCA] [GO:0000502 "proteasome complex"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0006094
"gluconeogenesis" evidence=RCA] [GO:0006096 "glycolysis"
evidence=RCA] [GO:0006635 "fatty acid beta-oxidation" evidence=RCA]
[GO:0009407 "toxin catabolic process" evidence=RCA] [GO:0043161
"proteasomal ubiquitin-dependent protein catabolic process"
evidence=RCA] [GO:0043248 "proteasome assembly" evidence=RCA]
[GO:0051788 "response to misfolded protein" evidence=RCA]
[GO:0080129 "proteasome core complex assembly" evidence=RCA]
InterPro:IPR001353 InterPro:IPR016050 InterPro:IPR016295
InterPro:IPR023333 Pfam:PF00227 PIRSF:PIRSF001213 PROSITE:PS00854
PROSITE:PS51476 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0005634 GO:GO:0046686 GO:GO:0009651 GO:GO:0000502
GO:GO:0022626 EMBL:AC058785 GO:GO:0051603 GO:GO:0005839
GO:GO:0004298 eggNOG:COG0638 EMBL:AF043538 EMBL:AF378880
EMBL:AY045596 EMBL:AY052739 EMBL:AK221762 EMBL:Y13696
IPI:IPI00544503 PIR:D96606 PIR:T51986 RefSeq:NP_176040.1
UniGene:At.399 ProteinModelPortal:Q7DLR9 SMR:Q7DLR9 IntAct:Q7DLR9
STRING:Q7DLR9 MEROPS:T01.987 PaxDb:Q7DLR9 PRIDE:Q7DLR9
EnsemblPlants:AT1G56450.1 GeneID:842098 KEGG:ath:AT1G56450
GeneFarm:5117 TAIR:At1g56450 HOGENOM:HOG000181719 InParanoid:Q7DLR9
KO:K02736 OMA:RIMRVND PhylomeDB:Q7DLR9 ProtClustDB:CLSN2682891
Genevestigator:Q7DLR9 GermOnline:AT1G56450 Uniprot:Q7DLR9
Length = 246
Score = 267 (99.0 bits), Expect = 3.8e-23, P = 3.8e-23
Identities = 46/121 (38%), Positives = 82/121 (67%)
Query: 158 KQKITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYA 217
++ + P TGTS++ + + GV++A+D G YGS +R+ + R+ I K ++LGA + +
Sbjct: 22 QRTLYPYVTGTSIVAIKYKDGVLMASDMGGSYGSTLRYKNIERVKAIGKHSLLGASGEIS 81
Query: 218 DFQYLNDIVKQKILDDDLHNDGFVLKPKSLHSWLTRVLYNRRSQFDPLWINAFVAGMQNG 277
DFQ + + + L+D++ +DG L PK +H++LTRV+YNRR++F+PLW + G++NG
Sbjct: 82 DFQEILRYLDELTLNDNMWDDGNSLGPKEIHNYLTRVMYNRRNKFNPLWNTLVLGGVKNG 141
Query: 278 E 278
+
Sbjct: 142 K 142
Score = 136 (52.9 bits), Expect = 4.9e-07, P = 4.9e-07
Identities = 25/67 (37%), Positives = 43/67 (64%)
Query: 94 PLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQ-- 151
P TGTS++ + + GV++A+D G YGS +R+ + R+ I K ++LGA + +DFQ
Sbjct: 27 PYVTGTSIVAIKYKDGVLMASDMGGSYGSTLRYKNIERVKAIGKHSLLGASGEISDFQEI 86
Query: 152 --YLNDI 156
YL+++
Sbjct: 87 LRYLDEL 93
Score = 117 (46.2 bits), Expect = 9.2e-05, P = 9.2e-05
Identities = 23/60 (38%), Positives = 38/60 (63%)
Query: 1 FLGTVDKLGTAYEDKILSFGFGTHIAVPLLRQETEKNPQMSKEEAIALIKTCMDLLYVRD 60
+LG V +G ++ED ++ GFG H+A P+LR E + +S E+ + L++ CM +L RD
Sbjct: 144 YLGMVSMIGVSFEDDHVATGFGNHLARPILRDEWHAD--LSFEDGVKLLEKCMRVLLYRD 201
>CGD|CAL0000170 [details] [associations]
symbol:orf19.4230 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0019774 "proteasome core complex,
beta-subunit complex" evidence=IEA] [GO:0034515 "proteasome storage
granule" evidence=IEA] [GO:0043248 "proteasome assembly"
evidence=IEA] [GO:0043161 "proteasomal ubiquitin-dependent protein
catabolic process" evidence=IEA] [GO:0010499 "proteasomal
ubiquitin-independent protein catabolic process" evidence=IEA]
InterPro:IPR001353 InterPro:IPR016295 InterPro:IPR023333
Pfam:PF00227 PIRSF:PIRSF001213 PROSITE:PS51476 CGD:CAL0000170
EMBL:AACQ01000022 GO:GO:0051603 GO:GO:0005839 GO:GO:0004298
eggNOG:COG0638 KO:K02736 RefSeq:XP_720540.1
ProteinModelPortal:Q5AGE9 SMR:Q5AGE9 STRING:Q5AGE9 GeneID:3637708
KEGG:cal:CaO19.4230 Uniprot:Q5AGE9
Length = 278
Score = 262 (97.3 bits), Expect = 1.3e-22, P = 1.3e-22
Identities = 54/139 (38%), Positives = 89/139 (64%)
Query: 138 FTILGAGNDYADFQYLNDIVKQKIT-PLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFN 196
+ I A N+ + Q ++ K P+ TGTSV+ F GVI+AAD G YGS++RFN
Sbjct: 21 YKIAHANNNQVE-QTTHNFPKMNTQQPIITGTSVIASKFKNGVIMAADHVGSYGSLLRFN 79
Query: 197 DCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDLH-NDGF-VLKPKSLHSWLTRV 254
+ R++++ K T++G D +D QY+ ++ + +D++++ NDG L+ ++H +L+RV
Sbjct: 80 NIERLIKVGKETVVGISGDISDLQYIVRLLDELEIDEEVYDNDGGEYLRAPNVHEYLSRV 139
Query: 255 LYNRRSQFDPLWINAFVAG 273
LYNRRS+ +PLW NA + G
Sbjct: 140 LYNRRSKMNPLW-NAIIVG 157
Score = 165 (63.1 bits), Expect = 2.2e-10, P = 2.2e-10
Identities = 45/143 (31%), Positives = 75/143 (52%)
Query: 83 HYFRRSGSFSTPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILG 142
H F + + P+ TGTSV+ F GVI+AAD G YGS++RFN+ R++++ K T++G
Sbjct: 36 HNFPKMNT-QQPIITGTSVIASKFKNGVIMAADHVGSYGSLLRFNNIERLIKVGKETVVG 94
Query: 143 AGNDYADFQYLNDIVKQKITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIM 202
D +D QY+ ++ + L V +GG L A + Y S + +N ++
Sbjct: 95 ISGDISDLQYIVRLLDE----LEIDEEVYDN--DGGEYLRAPNVHEYLSRVLYNRRSKMN 148
Query: 203 QINKFTILGAGN-DYADF-QYLN 223
+ I+G N D F +Y++
Sbjct: 149 PLWNAIIVGGFNKDRTPFLKYVD 171
Score = 117 (46.2 bits), Expect = 0.00013, P = 0.00013
Identities = 25/67 (37%), Positives = 40/67 (59%)
Query: 1 FLGTVDKLGTAYEDKILSFGFGTHIAVPLLRQ---ETEKNPQMSKEEAIALIKTCMDLLY 57
FL VD LG Y ++ GFG+H+A+PLLR E + ++ +++ ++ M +L+
Sbjct: 166 FLKYVDLLGVTYHASTMATGFGSHLAIPLLRNLIPEDKDYVKVDEQQVSKAVEDSMRVLF 225
Query: 58 VRDARSG 64
RDARSG
Sbjct: 226 YRDARSG 232
>POMBASE|SPBC577.10 [details] [associations]
symbol:SPBC577.10 "20S proteasome complex subunit beta 7
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0004298
"threonine-type endopeptidase activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
[GO:0007346 "regulation of mitotic cell cycle" evidence=IC]
[GO:0019774 "proteasome core complex, beta-subunit complex"
evidence=ISS] [GO:0043161 "proteasomal ubiquitin-dependent protein
catabolic process" evidence=ISS] [GO:0004175 "endopeptidase
activity" evidence=ISS] InterPro:IPR001353 InterPro:IPR016050
InterPro:IPR016295 InterPro:IPR023333 Pfam:PF00227
PIRSF:PIRSF001213 PROSITE:PS00854 PROSITE:PS51476
PomBase:SPBC577.10 GO:GO:0005829 GO:GO:0005634 GO:GO:0007346
GO:GO:0043161 EMBL:CU329671 GO:GO:0004298 eggNOG:COG0638
GO:GO:0019774 HOGENOM:HOG000181719 KO:K02736 OMA:RIMRVND
MEROPS:T01.A13 PIR:T40554 RefSeq:NP_595308.1
ProteinModelPortal:Q9USQ9 STRING:Q9USQ9 PRIDE:Q9USQ9
EnsemblFungi:SPBC577.10.1 GeneID:2540875 KEGG:spo:SPBC577.10
OrthoDB:EOG4V46HT NextBio:20801991 Uniprot:Q9USQ9
Length = 262
Score = 262 (97.3 bits), Expect = 1.3e-22, P = 1.3e-22
Identities = 48/125 (38%), Positives = 82/125 (65%)
Query: 157 VKQKITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDY 216
+++ + P+ TG+SVL L F GV++AAD+ YGS+ RF D R+ ++ TI+GAG D
Sbjct: 33 IQRTVQPIVTGSSVLALKFADGVMIAADNLASYGSLARFYDVERLTKVGDNTIVGAGGDI 92
Query: 217 ADFQYLNDIVKQKILDDDLHNDGFVLKPKSLHSWLTRVLYNRRSQFDPLWINAFVAGM-- 274
+D+Q + ++++ + + + DG+ L+P +H +L++VLY RR++ DP W VAG+
Sbjct: 93 SDYQQIQRLLEKLEIKEGNYGDGYALQPSYIHEYLSKVLYARRNKLDPYWNQLIVAGVDG 152
Query: 275 QNGEP 279
+N EP
Sbjct: 153 ENKEP 157
Score = 150 (57.9 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 28/66 (42%), Positives = 45/66 (68%)
Query: 94 PLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYL 153
P+ TG+SVL L F GV++AAD+ YGS+ RF D R+ ++ TI+GAG D +D+Q +
Sbjct: 39 PIVTGSSVLALKFADGVMIAADNLASYGSLARFYDVERLTKVGDNTIVGAGGDISDYQQI 98
Query: 154 NDIVKQ 159
++++
Sbjct: 99 QRLLEK 104
Score = 122 (48.0 bits), Expect = 2.8e-05, P = 2.8e-05
Identities = 26/65 (40%), Positives = 39/65 (60%)
Query: 1 FLGTVDKLGTAYEDKILSFGFGTHIAVPLLRQETEKN--PQMSKEEAIALIKTCMDLLYV 58
++ D GT Y ++ GF H+A+P+LR+ T+ + +SKE A A I CM +L+
Sbjct: 158 YVAFADLRGTTYSAPAIATGFAMHLALPMLRKATDDDRWKTLSKESARATIDECMRVLFY 217
Query: 59 RDARS 63
RDARS
Sbjct: 218 RDARS 222
>DICTYBASE|DDB_G0273909 [details] [associations]
symbol:psmB4-2 "20S proteasome subunit alpha-4"
species:44689 "Dictyostelium discoideum" [GO:0008233 "peptidase
activity" evidence=IEA;IDA] [GO:0006508 "proteolysis"
evidence=IEA;IDA] [GO:0005829 "cytosol" evidence=IPI] [GO:0005737
"cytoplasm" evidence=IEA;IPI] [GO:0005634 "nucleus"
evidence=IEA;IPI] [GO:0051603 "proteolysis involved in cellular
protein catabolic process" evidence=IEA] [GO:0005839 "proteasome
core complex" evidence=IEA] [GO:0004298 "threonine-type
endopeptidase activity" evidence=IEA] [GO:0004175 "endopeptidase
activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0000502 "proteasome complex" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR001353
InterPro:IPR016050 InterPro:IPR016295 InterPro:IPR023333
Pfam:PF00227 PIRSF:PIRSF001213 PROSITE:PS00854 PROSITE:PS51476
dictyBase:DDB_G0273909 dictyBase:DDB_G0273163 GO:GO:0005829
GO:GO:0005634 GO:GO:0006508 GenomeReviews:CM000151_GR
EMBL:AAFI02000011 EMBL:AAFI02000009 GO:GO:0008233 GO:GO:0051603
GO:GO:0005839 GO:GO:0004298 eggNOG:COG0638 KO:K02736 OMA:RIMRVND
RefSeq:XP_644571.1 RefSeq:XP_644680.1 ProteinModelPortal:Q556Q0
STRING:Q556Q0 MEROPS:T01.A13 PRIDE:Q556Q0
EnsemblProtists:DDB0232934 EnsemblProtists:DDB0266501
GeneID:8618774 GeneID:8619202 KEGG:ddi:DDB_G0273163
KEGG:ddi:DDB_G0273909 ProtClustDB:CLSZ2431215 Uniprot:Q556Q0
Length = 259
Score = 243 (90.6 bits), Expect = 1.3e-20, P = 1.3e-20
Identities = 46/122 (37%), Positives = 76/122 (62%)
Query: 158 KQK-ITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDY 216
KQK + P+ TGTSV+ + ++ GV++ +D YGS+ RFN R+ + +TI+GA +Y
Sbjct: 34 KQKTLDPIVTGTSVIAIKYDKGVVMGSDMLLSYGSLARFNSTERMKKFGGYTIVGASGEY 93
Query: 217 ADFQYLNDIVKQKILDDDLHNDGFVLKPKSLHSWLTRVLYNRRSQFDPLWINAFVAGMQN 276
+DFQ + + + + DD +DG L + + ++L RVLYN+R++ +PLW V G Q
Sbjct: 94 SDFQSITNTLNDLVTDDHCMDDGSKLSSEEIWNYLARVLYNQRNRGNPLWNTLVVMGYQG 153
Query: 277 GE 278
G+
Sbjct: 154 GK 155
Score = 184 (69.8 bits), Expect = 1.8e-13, P = 1.8e-13
Identities = 34/66 (51%), Positives = 50/66 (75%)
Query: 1 FLGTVDKLGTAYEDKILSFGFGTHIAVPLLRQETEKNPQMSKEEAIALIKTCMDLLYVRD 60
FLG VD +GT Y+D I++ G+G+HIA+PLLR+ ++NP M+ E+A LI+ C+ +L+ RD
Sbjct: 157 FLGKVDLVGTCYKDDIITTGYGSHIALPLLRKARDENPNMNLEQAKQLIQDCLRVLFYRD 216
Query: 61 ARSGAK 66
ARS K
Sbjct: 217 ARSSKK 222
Score = 149 (57.5 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 28/85 (32%), Positives = 49/85 (57%)
Query: 78 PNVLPHYFRRSGSFSTPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINK 137
P PH + + P+ TGTSV+ + ++ GV++ +D YGS+ RFN R+ +
Sbjct: 25 PQYNPHLGGKQKTLD-PIVTGTSVIAIKYDKGVVMGSDMLLSYGSLARFNSTERMKKFGG 83
Query: 138 FTILGAGNDYADFQYLNDIVKQKIT 162
+TI+GA +Y+DFQ + + + +T
Sbjct: 84 YTIVGASGEYSDFQSITNTLNDLVT 108
>DICTYBASE|DDB_G0273163 [details] [associations]
symbol:psmB4-1 "proteasome subunit beta type 4"
species:44689 "Dictyostelium discoideum" [GO:0008233 "peptidase
activity" evidence=IEA;IDA] [GO:0006508 "proteolysis"
evidence=IEA;IDA] [GO:0005829 "cytosol" evidence=IPI] [GO:0005737
"cytoplasm" evidence=IEA;IPI] [GO:0005634 "nucleus"
evidence=IEA;IPI] [GO:0051603 "proteolysis involved in cellular
protein catabolic process" evidence=IEA] [GO:0005839 "proteasome
core complex" evidence=IEA] [GO:0004298 "threonine-type
endopeptidase activity" evidence=IEA] [GO:0004175 "endopeptidase
activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0000502 "proteasome complex" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR001353
InterPro:IPR016050 InterPro:IPR016295 InterPro:IPR023333
Pfam:PF00227 PIRSF:PIRSF001213 PROSITE:PS00854 PROSITE:PS51476
dictyBase:DDB_G0273909 dictyBase:DDB_G0273163 GO:GO:0005829
GO:GO:0005634 GO:GO:0006508 GenomeReviews:CM000151_GR
EMBL:AAFI02000011 EMBL:AAFI02000009 GO:GO:0008233 GO:GO:0051603
GO:GO:0005839 GO:GO:0004298 eggNOG:COG0638 KO:K02736 OMA:RIMRVND
RefSeq:XP_644571.1 RefSeq:XP_644680.1 ProteinModelPortal:Q556Q0
STRING:Q556Q0 MEROPS:T01.A13 PRIDE:Q556Q0
EnsemblProtists:DDB0232934 EnsemblProtists:DDB0266501
GeneID:8618774 GeneID:8619202 KEGG:ddi:DDB_G0273163
KEGG:ddi:DDB_G0273909 ProtClustDB:CLSZ2431215 Uniprot:Q556Q0
Length = 259
Score = 243 (90.6 bits), Expect = 1.3e-20, P = 1.3e-20
Identities = 46/122 (37%), Positives = 76/122 (62%)
Query: 158 KQK-ITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDY 216
KQK + P+ TGTSV+ + ++ GV++ +D YGS+ RFN R+ + +TI+GA +Y
Sbjct: 34 KQKTLDPIVTGTSVIAIKYDKGVVMGSDMLLSYGSLARFNSTERMKKFGGYTIVGASGEY 93
Query: 217 ADFQYLNDIVKQKILDDDLHNDGFVLKPKSLHSWLTRVLYNRRSQFDPLWINAFVAGMQN 276
+DFQ + + + + DD +DG L + + ++L RVLYN+R++ +PLW V G Q
Sbjct: 94 SDFQSITNTLNDLVTDDHCMDDGSKLSSEEIWNYLARVLYNQRNRGNPLWNTLVVMGYQG 153
Query: 277 GE 278
G+
Sbjct: 154 GK 155
Score = 184 (69.8 bits), Expect = 1.8e-13, P = 1.8e-13
Identities = 34/66 (51%), Positives = 50/66 (75%)
Query: 1 FLGTVDKLGTAYEDKILSFGFGTHIAVPLLRQETEKNPQMSKEEAIALIKTCMDLLYVRD 60
FLG VD +GT Y+D I++ G+G+HIA+PLLR+ ++NP M+ E+A LI+ C+ +L+ RD
Sbjct: 157 FLGKVDLVGTCYKDDIITTGYGSHIALPLLRKARDENPNMNLEQAKQLIQDCLRVLFYRD 216
Query: 61 ARSGAK 66
ARS K
Sbjct: 217 ARSSKK 222
Score = 149 (57.5 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 28/85 (32%), Positives = 49/85 (57%)
Query: 78 PNVLPHYFRRSGSFSTPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINK 137
P PH + + P+ TGTSV+ + ++ GV++ +D YGS+ RFN R+ +
Sbjct: 25 PQYNPHLGGKQKTLD-PIVTGTSVIAIKYDKGVVMGSDMLLSYGSLARFNSTERMKKFGG 83
Query: 138 FTILGAGNDYADFQYLNDIVKQKIT 162
+TI+GA +Y+DFQ + + + +T
Sbjct: 84 YTIVGASGEYSDFQSITNTLNDLVT 108
>ASPGD|ASPL0000028212 [details] [associations]
symbol:AN10708 species:162425 "Emericella nidulans"
[GO:0043248 "proteasome assembly" evidence=IEA] [GO:0043161
"proteasomal ubiquitin-dependent protein catabolic process"
evidence=IEA] [GO:0010499 "proteasomal ubiquitin-independent
protein catabolic process" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0019774 "proteasome core complex, beta-subunit
complex" evidence=IEA] [GO:0034515 "proteasome storage granule"
evidence=IEA] [GO:0004298 "threonine-type endopeptidase activity"
evidence=IEA] InterPro:IPR001353 InterPro:IPR016050
InterPro:IPR016295 InterPro:IPR023333 Pfam:PF00227
PIRSF:PIRSF001213 PROSITE:PS00854 PROSITE:PS51476 GO:GO:0005634
GO:GO:0005737 EMBL:BN001305 GO:GO:0051603 GO:GO:0005839
GO:GO:0004298 OMA:RIMRVND EnsemblFungi:CADANIAT00003268
Uniprot:C8VFE6
Length = 260
Score = 237 (88.5 bits), Expect = 5.7e-20, P = 5.7e-20
Identities = 44/115 (38%), Positives = 71/115 (61%)
Query: 162 TPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQY 221
+P TGTSV+ + FNGGV +AAD+ YGS+ RF D R+ + ++G D +D QY
Sbjct: 35 SPAVTGTSVIAVKFNGGVAIAADNLASYGSLARFTDVKRLRKFGDAAVIGFSGDVSDMQY 94
Query: 222 LNDIVKQKILDDDLHNDGFVLKPKSLHSWLTRVLYNRRSQFDPLWINAFVAGMQN 276
++ +++ + ++ G L K+LH++L++V Y RRS F+PLW + VAG +
Sbjct: 95 IDRLLESIDIRENYSVHGNQLNAKNLHTYLSKVFYKRRSDFNPLWNHILVAGFDS 149
Score = 148 (57.2 bits), Expect = 2.1e-08, P = 2.1e-08
Identities = 26/66 (39%), Positives = 42/66 (63%)
Query: 93 TPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQY 152
+P TGTSV+ + FNGGV +AAD+ YGS+ RF D R+ + ++G D +D QY
Sbjct: 35 SPAVTGTSVIAVKFNGGVAIAADNLASYGSLARFTDVKRLRKFGDAAVIGFSGDVSDMQY 94
Query: 153 LNDIVK 158
++ +++
Sbjct: 95 IDRLLE 100
Score = 145 (56.1 bits), Expect = 4.9e-08, P = 4.9e-08
Identities = 29/66 (43%), Positives = 46/66 (69%)
Query: 1 FLGTVDKLGTAYEDKILSFGFGTHIAVPLLRQE-TEKNP--QMSKEEAIALIKTCMDLLY 57
FL + D LGT + L+ GFG H+A+P+LR+ E+ P ++SKE+A++ +K C+ +L+
Sbjct: 154 FLSSADLLGTTFSAPHLATGFGAHLAIPILRRLFPEERPIEEISKEDAVSALKDCLKVLW 213
Query: 58 VRDARS 63
RDARS
Sbjct: 214 YRDARS 219
>SGD|S000001946 [details] [associations]
symbol:PRE4 "Beta 7 subunit of the 20S proteasome"
species:4932 "Saccharomyces cerevisiae" [GO:0003674
"molecular_function" evidence=ND] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0010499 "proteasomal ubiquitin-independent
protein catabolic process" evidence=IDA] [GO:0043161 "proteasomal
ubiquitin-dependent protein catabolic process" evidence=IDA]
[GO:0019774 "proteasome core complex, beta-subunit complex"
evidence=IDA] [GO:0005789 "endoplasmic reticulum membrane"
evidence=IC] [GO:0043248 "proteasome assembly" evidence=IGI]
[GO:0005839 "proteasome core complex" evidence=IEA] [GO:0051603
"proteolysis involved in cellular protein catabolic process"
evidence=IEA] [GO:0004175 "endopeptidase activity" evidence=IEA]
[GO:0004298 "threonine-type endopeptidase activity" evidence=IEA]
[GO:0034515 "proteasome storage granule" evidence=IDA] [GO:0005634
"nucleus" evidence=IEA;IC] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0000502 "proteasome complex" evidence=IEA] [GO:0006508
"proteolysis" evidence=IEA] [GO:0008233 "peptidase activity"
evidence=IEA] InterPro:IPR001353 InterPro:IPR016050
InterPro:IPR016295 InterPro:IPR023333 Pfam:PF00227
PIRSF:PIRSF001213 PROSITE:PS00854 PROSITE:PS51476 SGD:S000001946
GO:GO:0005634 GO:GO:0043161 GO:GO:0005789 EMBL:D50617 EMBL:BK006940
GO:GO:0043248 GO:GO:0010499 PDB:1VSY PDB:3L5Q PDBsum:1VSY
PDBsum:3L5Q GO:GO:0004298 GO:GO:0034515 PDB:4G4S PDBsum:4G4S
PDB:4B4T PDBsum:4B4T eggNOG:COG0638 PDB:1FNT PDB:1G0U PDB:1G65
PDB:1JD2 PDB:1RYP PDB:1Z7Q PDB:2F16 PDB:2FAK PDB:2GPL PDB:2ZCY
PDB:3BDM PDB:3D29 PDB:3DY3 PDB:3DY4 PDB:3E47 PDB:3GPJ PDB:3GPT
PDB:3GPW PDB:3HYE PDB:3MG0 PDB:3MG4 PDB:3MG6 PDB:3MG7 PDB:3MG8
PDB:3NZJ PDB:3NZW PDB:3NZX PDB:3OEU PDB:3OEV PDB:3OKJ PDB:3SDI
PDB:3SDK PDB:3SHJ PDB:3TDD PDB:3UN4 PDB:3UN8 PDB:4FZC PDB:4FZG
PDB:4GK7 PDBsum:1FNT PDBsum:1G0U PDBsum:1G65 PDBsum:1JD2
PDBsum:1RYP PDBsum:1Z7Q PDBsum:2F16 PDBsum:2FAK PDBsum:2GPL
PDBsum:2ZCY PDBsum:3BDM PDBsum:3D29 PDBsum:3DY3 PDBsum:3DY4
PDBsum:3E47 PDBsum:3GPJ PDBsum:3GPT PDBsum:3GPW PDBsum:3HYE
PDBsum:3MG0 PDBsum:3MG4 PDBsum:3MG6 PDBsum:3MG7 PDBsum:3MG8
PDBsum:3NZJ PDBsum:3NZW PDBsum:3NZX PDBsum:3OEU PDBsum:3OEV
PDBsum:3OKJ PDBsum:3SDI PDBsum:3SDK PDBsum:3SHJ PDBsum:3TDD
PDBsum:3UN4 PDBsum:3UN8 PDBsum:4FZC PDBsum:4FZG PDBsum:4GK7
GO:GO:0019774 MEROPS:T01.987 HOGENOM:HOG000181719 KO:K02736
OMA:RIMRVND GeneTree:ENSGT00390000000698 OrthoDB:EOG4V46HT
EMBL:X68663 EMBL:AY692947 PIR:A46610 RefSeq:NP_116708.1
ProteinModelPortal:P30657 SMR:P30657 DIP:DIP-2807N IntAct:P30657
MINT:MINT-592513 STRING:P30657 PaxDb:P30657 PeptideAtlas:P30657
EnsemblFungi:YFR050C GeneID:850611 KEGG:sce:YFR050C CYGD:YFR050c
EvolutionaryTrace:P30657 NextBio:966499 Genevestigator:P30657
GermOnline:YFR050C Uniprot:P30657
Length = 266
Score = 235 (87.8 bits), Expect = 9.2e-20, P = 9.2e-20
Identities = 47/121 (38%), Positives = 75/121 (61%)
Query: 163 PLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQY- 221
P+ TGTSV+ + ++ GVI+AAD+ G YGS++RFN R++ + T++G D +D Q+
Sbjct: 37 PIVTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHI 96
Query: 222 ---LNDIVKQKILDDDLHNDGFVLKPKSLHSWLTRVLYNRRSQFDPLWINAFVAGMQ-NG 277
L D+V + D+ L + L+P + +L V+Y RRS+ +PLW VAG+Q NG
Sbjct: 97 ERLLKDLVTENAYDNPLADAEEALEPSYIFEYLATVMYQRRSKMNPLWNAIIVAGVQSNG 156
Query: 278 E 278
+
Sbjct: 157 D 157
Score = 161 (61.7 bits), Expect = 5.4e-10, P = 5.4e-10
Identities = 27/69 (39%), Positives = 47/69 (68%)
Query: 94 PLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYL 153
P+ TGTSV+ + ++ GVI+AAD+ G YGS++RFN R++ + T++G D +D Q++
Sbjct: 37 PIVTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHI 96
Query: 154 NDIVKQKIT 162
++K +T
Sbjct: 97 ERLLKDLVT 105
Score = 110 (43.8 bits), Expect = 0.00073, P = 0.00073
Identities = 27/66 (40%), Positives = 37/66 (56%)
Query: 1 FLGTVDKLGTAYEDKILSFGFGTHIAVPLLRQETEKN---PQMSKEEAIALIKTCMDLLY 57
FL V+ LG Y L+ GFG H+A PLLR+ ++ P+ + + A I M +LY
Sbjct: 159 FLRYVNLLGVTYSSPTLATGFGAHMANPLLRKVVDRESDIPKTTVQVAEEAIVNAMRVLY 218
Query: 58 VRDARS 63
RDARS
Sbjct: 219 YRDARS 224
>WB|WBGene00003953 [details] [associations]
symbol:pbs-7 species:6239 "Caenorhabditis elegans"
[GO:0004298 "threonine-type endopeptidase activity" evidence=IEA]
[GO:0005839 "proteasome core complex" evidence=IEA] [GO:0051603
"proteolysis involved in cellular protein catabolic process"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040011 "locomotion" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0008340 "determination of adult lifespan"
evidence=IMP] InterPro:IPR001353 InterPro:IPR016295
InterPro:IPR023333 Pfam:PF00227 PIRSF:PIRSF001213 PROSITE:PS51476
GO:GO:0008340 GO:GO:0009792 GO:GO:0040007 GO:GO:0002119
GO:GO:0040011 GO:GO:0000003 GO:GO:0051603 EMBL:Z81079 GO:GO:0005839
GO:GO:0004298 eggNOG:COG0638 HOGENOM:HOG000181719 KO:K02736
OMA:RIMRVND GeneTree:ENSGT00390000000698 PIR:T22003
RefSeq:NP_492354.1 ProteinModelPortal:P90868 SMR:P90868
DIP:DIP-26967N IntAct:P90868 MINT:MINT-211920 STRING:P90868
MEROPS:T01.A08 PaxDb:P90868 EnsemblMetazoa:F39H11.5 GeneID:172674
KEGG:cel:CELE_F39H11.5 UCSC:F39H11.5.1 CTD:172674 WormBase:F39H11.5
InParanoid:P90868 NextBio:876521 Uniprot:P90868
Length = 236
Score = 208 (78.3 bits), Expect = 6.7e-17, P = 6.7e-17
Identities = 40/125 (32%), Positives = 74/125 (59%)
Query: 154 NDIVKQKITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAG 213
+D V++ + P TGTSV+ L + GV++ D YG M R+ + R ++N ++ G
Sbjct: 4 HDEVQRTLNPTCTGTSVIALQYKTGVVVLTDRVVSYGKMARYKNVSRQYKVNDNVLIAFG 63
Query: 214 NDYADFQYLNDIVKQKILDDDLHNDGFVLKPKSLHSWLTRVLYNRRSQFDPLWINAFVAG 273
D+ADF +L +++++++L + + PK+LH +LT +LY +R + +P+W VAG
Sbjct: 64 GDHADFHWLQNVIERQVLLWKRFDQD--IGPKALHGYLTSLLYAKRCKMNPVWNTLVVAG 121
Query: 274 MQNGE 278
++ E
Sbjct: 122 VEEEE 126
Score = 129 (50.5 bits), Expect = 3.0e-06, P = 3.0e-06
Identities = 22/68 (32%), Positives = 41/68 (60%)
Query: 94 PLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYL 153
P TGTSV+ L + GV++ D YG M R+ + R ++N ++ G D+ADF +L
Sbjct: 13 PTCTGTSVIALQYKTGVVVLTDRVVSYGKMARYKNVSRQYKVNDNVLIAFGGDHADFHWL 72
Query: 154 NDIVKQKI 161
+++++++
Sbjct: 73 QNVIERQV 80
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.322 0.140 0.424 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 279 279 0.00081 115 3 11 22 0.47 33
33 0.41 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 21
No. of states in DFA: 596 (63 KB)
Total size of DFA: 192 KB (2108 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 23.67u 0.11s 23.78t Elapsed: 00:00:01
Total cpu time: 23.67u 0.11s 23.78t Elapsed: 00:00:01
Start: Thu Aug 15 16:23:15 2013 End: Thu Aug 15 16:23:16 2013