RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9489
(279 letters)
>1iru_N 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_M* 3une_M 3unf_M* 3unh_M
Length = 219
Score = 137 bits (347), Expect = 6e-40
Identities = 59/118 (50%), Positives = 83/118 (70%)
Query: 162 TPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQY 221
P+ TGTSVLG+ F GGV++AAD G YGS+ RF + RIM++N T+LGA DYADFQY
Sbjct: 3 NPMVTGTSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGASGDYADFQY 62
Query: 222 LNDIVKQKILDDDLHNDGFVLKPKSLHSWLTRVLYNRRSQFDPLWINAFVAGMQNGEP 279
L ++ Q ++D++L DG P+++HSWLTR +Y+RRS+ +PLW + G +GE
Sbjct: 63 LKQVLGQMVIDEELLGDGHSYSPRAIHSWLTRAMYSRRSKMNPLWNTMVIGGYADGES 120
Score = 88.4 bits (220), Expect = 3e-21
Identities = 38/69 (55%), Positives = 50/69 (72%)
Query: 93 TPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQY 152
P+ TGTSVLG+ F GGV++AAD G YGS+ RF + RIM++N T+LGA DYADFQY
Sbjct: 3 NPMVTGTSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGASGDYADFQY 62
Query: 153 LNDIVKQKI 161
L ++ Q +
Sbjct: 63 LKQVLGQMV 71
Score = 79.2 bits (196), Expect = 8e-18
Identities = 34/64 (53%), Positives = 44/64 (68%)
Query: 1 FLGTVDKLGTAYEDKILSFGFGTHIAVPLLRQETEKNPQMSKEEAIALIKTCMDLLYVRD 60
FLG VD LG AYE L+ G+G ++A PLLR+ EK P +S+ EA L++ CM +LY RD
Sbjct: 121 FLGYVDMLGVAYEAPSLATGYGAYLAQPLLREVLEKQPVLSQTEARDLVERCMRVLYYRD 180
Query: 61 ARSG 64
ARS
Sbjct: 181 ARSY 184
>1ryp_N 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_N*
1jd2_M* 1g65_M 1vsy_N 1z7q_N 2f16_M* 2fak_M* 2fny_M*
2gpl_M* 3d29_M* 3dy3_M* 3dy4_M* 3e47_M* 3gpj_M* 3gpt_M*
3gpw_M* 3hye_M* 3l5q_R 3mg0_M* 3mg4_M* ...
Length = 233
Score = 129 bits (326), Expect = 1e-36
Identities = 44/123 (35%), Positives = 74/123 (60%), Gaps = 5/123 (4%)
Query: 162 TPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQY 221
P+ TGTSV+ + ++ GVI+AAD+ G YGS++RFN R++ + T++G D +D Q+
Sbjct: 3 QPIVTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQH 62
Query: 222 LNDIVKQKI----LDDDLHNDGFVLKPKSLHSWLTRVLYNRRSQFDPLWINAFVAGM-QN 276
+ ++K + D+ L + L+P + +L V+Y RRS+ +PLW VAG+ N
Sbjct: 63 IERLLKDLVTENAYDNPLADAEEALEPSYIFEYLATVMYQRRSKMNPLWNAIIVAGVQSN 122
Query: 277 GEP 279
G+
Sbjct: 123 GDQ 125
Score = 87.4 bits (217), Expect = 8e-21
Identities = 27/70 (38%), Positives = 47/70 (67%)
Query: 93 TPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQY 152
P+ TGTSV+ + ++ GVI+AAD+ G YGS++RFN R++ + T++G D +D Q+
Sbjct: 3 QPIVTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQH 62
Query: 153 LNDIVKQKIT 162
+ ++K +T
Sbjct: 63 IERLLKDLVT 72
Score = 71.6 bits (176), Expect = 5e-15
Identities = 27/67 (40%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Query: 1 FLGTVDKLGTAYEDKILSFGFGTHIAVPLLRQ---ETEKNPQMSKEEAIALIKTCMDLLY 57
FL V+ LG Y L+ GFG H+A PLLR+ P+ + + A I M +LY
Sbjct: 126 FLRYVNLLGVTYSSPTLATGFGAHMANPLLRKVVDRESDIPKTTVQVAEEAIVNAMRVLY 185
Query: 58 VRDARSG 64
RDARS
Sbjct: 186 YRDARSS 192
>1g0u_M Proteasome component PRE4; ubiquitin, degradation, protease,
NTN-hydrolase; 2.40A {Saccharomyces cerevisiae} SCOP:
d.153.1.4 PDB: 2zcy_M* 3bdm_M* 3mg6_M* 3mg7_M* 3mg8_M*
3nzj_M* 3nzw_M* 3nzx_M*
Length = 266
Score = 127 bits (321), Expect = 1e-35
Identities = 44/122 (36%), Positives = 74/122 (60%), Gaps = 5/122 (4%)
Query: 163 PLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYL 222
P+ TGTSV+ + ++ GVI+AAD+ G YGS++RFN R++ + T++G D +D Q++
Sbjct: 37 PIVTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHI 96
Query: 223 NDIVKQKI----LDDDLHNDGFVLKPKSLHSWLTRVLYNRRSQFDPLWINAFVAGM-QNG 277
++K + D+ L + L+P + +L V+Y RRS+ +PLW VAG+ NG
Sbjct: 97 ERLLKDLVTENAYDNPLADAEEALEPSYIFEYLATVMYQRRSKMNPLWNAIIVAGVQSNG 156
Query: 278 EP 279
+
Sbjct: 157 DQ 158
Score = 88.2 bits (219), Expect = 8e-21
Identities = 28/103 (27%), Positives = 55/103 (53%), Gaps = 1/103 (0%)
Query: 60 DARSGAKNGPSLGKYHDFPNVLPHYFRRSGSFST-PLTTGTSVLGLVFNGGVILAADSAG 118
+ + P+ Y + + + + P+ TGTSV+ + ++ GVI+AAD+ G
Sbjct: 2 NHDPFSWGRPADSTYGAYNTQIANAGASPMVNTQQPIVTGTSVISMKYDNGVIIAADNLG 61
Query: 119 YYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKI 161
YGS++RFN R++ + T++G D +D Q++ ++K +
Sbjct: 62 SYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIERLLKDLV 104
Score = 71.3 bits (175), Expect = 9e-15
Identities = 27/67 (40%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
Query: 1 FLGTVDKLGTAYEDKILSFGFGTHIAVPLLRQETEKN---PQMSKEEAIALIKTCMDLLY 57
FL V+ LG Y L+ GFG H+A PLLR+ ++ P+ + + A I M +LY
Sbjct: 159 FLRYVNLLGVTYSSPTLATGFGAHMANPLLRKVVDRESDIPKTTVQVAEEAIVNAMRVLY 218
Query: 58 VRDARSG 64
RDARS
Sbjct: 219 YRDARSS 225
>1iru_K 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_J* 3une_J 3unf_J* 3unh_J
Length = 201
Score = 98.8 bits (247), Expect = 2e-25
Identities = 17/108 (15%), Positives = 47/108 (43%), Gaps = 5/108 (4%)
Query: 168 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVK 227
++G+ V++A+D + +D ++ ++++ +L + D + ++
Sbjct: 2 EYLIGIQGPDYVLVASDRVAASNIVQMKDDHDKMFKMSEKILLLCVGEAGDTVQFAEYIQ 61
Query: 228 QKILDDDLH--NDGFVLKPKSLHSWLTRVLYNRRSQFDPLWINAFVAG 273
+ + L+ +G+ L P + ++ R L + P +N +AG
Sbjct: 62 KNV---QLYKMRNGYELSPTAAANFTRRNLADCLRSRTPYHVNLLLAG 106
Score = 68.0 bits (167), Expect = 6e-14
Identities = 7/63 (11%), Positives = 28/63 (44%)
Query: 99 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVK 158
++G+ V++A+D + +D ++ ++++ +L + D + ++
Sbjct: 2 EYLIGIQGPDYVLVASDRVAASNIVQMKDDHDKMFKMSEKILLLCVGEAGDTVQFAEYIQ 61
Query: 159 QKI 161
+ +
Sbjct: 62 KNV 64
Score = 62.2 bits (152), Expect = 7e-12
Identities = 14/64 (21%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Query: 1 FLGTVDKLGTAYEDKILSFGFGTHIAVPLLRQETEKNPQMSKEEAIALIKTCMDLLYVRD 60
L +D L + + G+G + + +L + P +S+E A+ L++ C++ L R
Sbjct: 114 ALYYMDYLAALAKAPFAAHGYGAFLTLSIL--DRYYTPTISRERAVELLRKCLEELQKRF 171
Query: 61 ARSG 64
+
Sbjct: 172 ILNL 175
>1ryp_K 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_K
1g0u_J* 1jd2_J* 1g65_J 1vsy_K 1z7q_K 2f16_J* 2fak_J*
2fny_J* 2gpl_J* 2zcy_J* 3bdm_J* 3d29_J* 3dy3_J* 3dy4_J*
3e47_J* 3gpj_J* 3gpt_J* 3gpw_J* 3hye_J* ...
Length = 198
Score = 97.3 bits (243), Expect = 7e-25
Identities = 21/116 (18%), Positives = 48/116 (41%), Gaps = 7/116 (6%)
Query: 168 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVK 227
+LG+ VILA+ A G + + + Q++ T++ + D + ++
Sbjct: 2 DIILGIRVQDSVILASSKAVTRGISVLKDSDDKTRQLSPHTLMSFAGEAGDTVQFAEYIQ 61
Query: 228 QKILDDDLH--NDGFVLKPKSLHSWLTRVLYNRRSQFDPLWINAFVAGM--QNGEP 279
I L+ + + L P+++ S++ + L P +N + G + +P
Sbjct: 62 ANI---QLYSIREDYELSPQAVSSFVRQELAKSIRSRRPYQVNVLIGGYDKKKNKP 114
Score = 66.8 bits (164), Expect = 1e-13
Identities = 12/63 (19%), Positives = 26/63 (41%)
Query: 99 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVK 158
+LG+ VILA+ A G + + + Q++ T++ + D + ++
Sbjct: 2 DIILGIRVQDSVILASSKAVTRGISVLKDSDDKTRQLSPHTLMSFAGEAGDTVQFAEYIQ 61
Query: 159 QKI 161
I
Sbjct: 62 ANI 64
Score = 62.2 bits (152), Expect = 5e-12
Identities = 18/64 (28%), Positives = 26/64 (40%), Gaps = 2/64 (3%)
Query: 1 FLGTVDKLGTAYEDKILSFGFGTHIAVPLLRQETEKNPQMSKEEAIALIKTCMDLLYVRD 60
L +D LGT E + G+ LL + P M+ EE + L+K C+ L R
Sbjct: 115 ELYQIDYLGTKVELPYGAHGYSGFYTFSLL--DHHYRPDMTTEEGLDLLKLCVQELEKRM 172
Query: 61 ARSG 64
Sbjct: 173 PMDF 176
>1iru_M 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_L* 3une_L 3unf_L* 3unh_L
Length = 213
Score = 80.4 bits (199), Expect = 2e-18
Identities = 22/117 (18%), Positives = 56/117 (47%), Gaps = 8/117 (6%)
Query: 166 TGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDI 225
G ++L + I+A+D+ G + D P+ ++ T++G + D L I
Sbjct: 8 NGGTILAIAGEDFAIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKI 67
Query: 226 VKQKILDDDLH--NDGFVLKPKSLHSWLTRVLYNRRSQFDPLWINAFVAGM-QNGEP 279
++ ++ ++ ++ + ++ + L+ +LY+RR F P ++ + G+ + G+
Sbjct: 68 IEARL---KMYKHSNNKAMTTGAIAAMLSTILYSRR--FFPYYVYNIIGGLDEEGKG 119
Score = 63.0 bits (154), Expect = 4e-12
Identities = 15/71 (21%), Positives = 33/71 (46%)
Query: 91 FSTPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADF 150
FS + G ++L + I+A+D+ G + D P+ ++ T++G + D
Sbjct: 2 FSPYVFNGGTILAIAGEDFAIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDC 61
Query: 151 QYLNDIVKQKI 161
L I++ ++
Sbjct: 62 LTLTKIIEARL 72
Score = 48.0 bits (115), Expect = 6e-07
Identities = 14/71 (19%), Positives = 29/71 (40%), Gaps = 7/71 (9%)
Query: 1 FLGTVDKLGTAYEDKILSFGFGTHIAVPLL-------RQETEKNPQMSKEEAIALIKTCM 53
+ + D +G+ D + G + + PLL + ++ +S + A+ L+K
Sbjct: 120 AVYSFDPVGSYQRDSFKAGGSASAMLQPLLDNQVGFKNMQNVEHVPLSLDRAMRLVKDVF 179
Query: 54 DLLYVRDARSG 64
RD +G
Sbjct: 180 ISAAERDVYTG 190
>1ryp_M 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_M*
1jd2_L* 1g65_L 1vsy_M 1z7q_M 2f16_L* 2fak_L* 2fny_L*
2gpl_L* 3d29_L* 3dy3_L* 3dy4_L* 3e47_L* 3gpj_L* 3gpt_L*
3gpw_L* 3hye_L* 3l5q_Q 3mg0_L* 3mg4_L* ...
Length = 222
Score = 66.6 bits (163), Expect = 2e-13
Identities = 21/108 (19%), Positives = 41/108 (37%), Gaps = 2/108 (1%)
Query: 166 TGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDI 225
G ++LG+ +LA D+ + P++ ++ A AD L
Sbjct: 8 NGGTILGIAGEDFAVLAGDTRNITDYSINSRYEPKVFDCGDNIVMSANGFAADGDALVKR 67
Query: 226 VKQKILDDDLHNDGFVLKPKSLHSWLTRVLYNRRSQFDPLWINAFVAG 273
K + ++ L S + +LY +R F P +++ +AG
Sbjct: 68 FKNSVKWYHFDHNDKKLSINSAARNIQHLLYGKR--FFPYYVHTIIAG 113
Score = 55.0 bits (133), Expect = 3e-09
Identities = 13/71 (18%), Positives = 25/71 (35%)
Query: 91 FSTPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADF 150
F+ G ++LG+ +LA D+ + P++ ++ A AD
Sbjct: 2 FNPYGDNGGTILGIAGEDFAVLAGDTRNITDYSINSRYEPKVFDCGDNIVMSANGFAADG 61
Query: 151 QYLNDIVKQKI 161
L K +
Sbjct: 62 DALVKRFKNSV 72
Score = 35.4 bits (82), Expect = 0.011
Identities = 12/79 (15%), Positives = 27/79 (34%), Gaps = 15/79 (18%)
Query: 1 FLGTVDKLGTAYEDKILSFGFGTHIAVPLL---------------RQETEKNPQMSKEEA 45
+ + D +G+ ++ + G + +P L + + +S EE
Sbjct: 121 AVYSFDPVGSYEREQCRAGGAAASLIMPFLDNQVNFKNQYEPGTNGKVKKPLKYLSVEEV 180
Query: 46 IALIKTCMDLLYVRDARSG 64
I L++ R + G
Sbjct: 181 IKLVRDSFTSATERHIQVG 199
>1ryp_J 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_I*
1g65_I 1vsy_J 2f16_I* 2fak_I* 2fny_I* 2gpl_I* 3d29_I*
3dy3_I* 3dy4_I* 3e47_I* 3gpj_I* 3gpt_I* 3gpw_I* 3hye_I*
3l5q_N 3mg0_I* 3mg4_I* 3oeu_I* 3oev_I* ...
Length = 204
Score = 66.1 bits (162), Expect = 3e-13
Identities = 26/118 (22%), Positives = 50/118 (42%), Gaps = 10/118 (8%)
Query: 166 TGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDI 225
G V+ + V +A D S+ N +I + G D LN++
Sbjct: 7 NGGIVVAMTGKDCVAIACDLRLGSQSLGVSNKFEKIFHYGHVFLGITGL-ATDVTTLNEM 65
Query: 226 VKQKILDDDLH--NDGFVLKPKSLHSWLTRVLYNRRSQFDPLWINAFVAGM--QNGEP 279
+ K +L+ + ++P++ ++ LY RR F P ++ VAG+ ++G+P
Sbjct: 66 FRYKT---NLYKLKEERAIEPETFTQLVSSSLYERR--FGPYFVGPVVAGINSKSGKP 118
Score = 54.9 bits (133), Expect = 2e-09
Identities = 15/71 (21%), Positives = 25/71 (35%), Gaps = 2/71 (2%)
Query: 92 STPLT-TGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADF 150
S P + G V+ + V +A D S+ N +I + G D
Sbjct: 1 SDPSSINGGIVVAMTGKDCVAIACDLRLGSQSLGVSNKFEKIFHYGHVFLGITGL-ATDV 59
Query: 151 QYLNDIVKQKI 161
LN++ + K
Sbjct: 60 TTLNEMFRYKT 70
Score = 35.3 bits (82), Expect = 0.010
Identities = 15/65 (23%), Positives = 24/65 (36%), Gaps = 3/65 (4%)
Query: 1 FLGTVDKLGTAYEDKI-LSFGFGTHIAVPLLRQETEKNPQMSKEEAIALIKTCMDLLYVR 59
F+ D +G E K + G + + E+ P + E+ I + R
Sbjct: 119 FIAGFDLIGCIDEAKDFIVSGTASDQLFGMC--ESLYEPNLEPEDLFETISQALLNAADR 176
Query: 60 DARSG 64
DA SG
Sbjct: 177 DALSG 181
>1iru_I 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_H* 3une_H
Length = 234
Score = 64.6 bits (158), Expect = 1e-12
Identities = 24/115 (20%), Positives = 51/115 (44%), Gaps = 10/115 (8%)
Query: 168 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTIL-GAGNDYADFQYLNDIV 226
T++ G+V+ G++L AD+ G ++ +C +I I+ GAG AD ++
Sbjct: 1 TTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAG-TAADTDMTTQLI 59
Query: 227 KQKILDDDLH--NDGFVLKPKSLHSWLTRVLYNRRSQFDPLWINAFVAGMQNGEP 279
+ +LH + G + + + + L ++L+ R + + G+ P
Sbjct: 60 SSNL---ELHSLSTGRLPRVVTANRMLKQMLFRYR---GYIGAALVLGGVDVTGP 108
Score = 53.5 bits (129), Expect = 1e-08
Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 99 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTIL-GAGNDYADFQYLNDIV 157
T++ G+V+ G++L AD+ G ++ +C +I I+ GAG AD ++
Sbjct: 1 TTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAG-TAADTDMTTQLI 59
Query: 158 K 158
Sbjct: 60 S 60
Score = 45.0 bits (107), Expect = 8e-06
Identities = 15/63 (23%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Query: 2 LGTVDKLGTAYEDKILSFGFGTHIAVPLLRQETEKNPQMSKEEAIALIKTCMDLLYVRDA 61
L ++ G+ + ++ G G+ A+ + E + P M +EEA L+ + D
Sbjct: 110 LYSIYPHGSTDKLPYVTMGSGSLAAMAVF--EDKFRPDMEEEEAKNLVSEAIAAGIFNDL 167
Query: 62 RSG 64
SG
Sbjct: 168 GSG 170
>1iru_J 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_I* 3une_I 3unf_I* 3unh_I
Length = 205
Score = 61.0 bits (149), Expect = 2e-11
Identities = 27/111 (24%), Positives = 50/111 (45%), Gaps = 9/111 (8%)
Query: 166 TGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILG-AGNDYADFQYLND 224
G +V+ + V +AAD + + D +I + +G AG D Q +
Sbjct: 7 NGGAVMAMKGKNCVAIAADRRFGIQAQLVTTDFQKIFPMGDRLYIGLAGL-ATDVQTVAQ 65
Query: 225 IVKQKILDDDLH--NDGFVLKPKSLHSWLTRVLYNRRSQFDPLWINAFVAG 273
+K ++ +L+ +G +KP +L S + +LY +R F P + +AG
Sbjct: 66 RLKFRL---NLYELKEGRQIKPYTLMSMVANLLYEKR--FGPYYTEPVIAG 111
Score = 51.0 bits (123), Expect = 6e-08
Identities = 14/66 (21%), Positives = 27/66 (40%), Gaps = 2/66 (3%)
Query: 97 TGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILG-AGNDYADFQYLND 155
G +V+ + V +AAD + + D +I + +G AG D Q +
Sbjct: 7 NGGAVMAMKGKNCVAIAADRRFGIQAQLVTTDFQKIFPMGDRLYIGLAGL-ATDVQTVAQ 65
Query: 156 IVKQKI 161
+K ++
Sbjct: 66 RLKFRL 71
Score = 34.1 bits (79), Expect = 0.026
Identities = 15/65 (23%), Positives = 23/65 (35%), Gaps = 3/65 (4%)
Query: 1 FLGTVDKLGTAYE-DKILSFGFGTHIAVPLLRQETEKNPQMSKEEAIALIKTCMDLLYVR 59
F+ ++D +G D + G + E+ P M + I M R
Sbjct: 120 FICSLDLIGCPMVTDDFVVSGTCAEQMYGMC--ESLWEPNMDPDHLFETISQAMLNAVDR 177
Query: 60 DARSG 64
DA SG
Sbjct: 178 DAVSG 182
>3nzj_H Proteasome component PUP1; ubiquitin, protein degradation,
N-terminal nucleophilic HYDR 19S regulatory particle;
HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB:
3nzw_H* 3nzx_H*
Length = 261
Score = 58.5 bits (142), Expect = 3e-10
Identities = 24/86 (27%), Positives = 45/86 (52%), Gaps = 4/86 (4%)
Query: 76 DFPNVLPHYFRRSGSFSTP--LTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIM 133
F N + F S + P +TGT+++G+ FN GV++AAD+ G ++ +C ++
Sbjct: 5 SFDNYQRNNFLAENSHTQPKATSTGTTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLH 64
Query: 134 QINKFTIL-GAGNDYADFQYLNDIVK 158
+I+ GAG AD + + ++
Sbjct: 65 RISPKIWCAGAGT-AADTEAVTQLIG 89
Score = 57.0 bits (138), Expect = 8e-10
Identities = 29/132 (21%), Positives = 58/132 (43%), Gaps = 10/132 (7%)
Query: 151 QYLNDIVKQKITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTIL 210
+L + + +TGT+++G+ FN GV++AAD+ G ++ +C ++ +I+
Sbjct: 13 NFLAENSHTQPKATSTGTTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWC 72
Query: 211 -GAGNDYADFQYLNDIVKQKILDDDLH--NDGFVLKPKSLHSWLTRVLYNRRSQFDPLWI 267
GAG AD + + ++ I +LH + S L + L+ + +
Sbjct: 73 AGAGT-AADTEAVTQLIGSNI---ELHSLYTSREPRVVSALQMLKQHLFKYQ---GHIGA 125
Query: 268 NAFVAGMQNGEP 279
VAG+
Sbjct: 126 YLIVAGVDPTGS 137
Score = 36.5 bits (85), Expect = 0.006
Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Query: 4 TVDKLGTAYEDKILSFGFGTHIAVPLLRQETEKNPQMSKEEAIALIKTCMDLLYVRDARS 63
++ G+ LS G G+ A+ +L E+ ++KEEAI L + D S
Sbjct: 141 SIHAHGSTDVGYYLSLGSGSLAAMAVL--ESHWKQDLTKEEAIKLASDAIQAGIWNDLGS 198
Query: 64 G 64
G
Sbjct: 199 G 199
>3nzj_K Proteasome component PRE2; ubiquitin, protein degradation,
N-terminal nucleophilic HYDR 19S regulatory particle;
HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB:
3nzw_K* 3nzx_K*
Length = 287
Score = 56.3 bits (136), Expect = 2e-09
Identities = 25/114 (21%), Positives = 48/114 (42%), Gaps = 9/114 (7%)
Query: 163 PLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTIL-GAGNDYADFQY 221
+ GT+ L F GG+I+A DS G+ + ++++IN F + AG AD Q+
Sbjct: 71 KIAHGTTTLAFRFQGGIIVAVDSRATAGNWVASQTVKKVIEINPFLLGTMAGG-AADCQF 129
Query: 222 LNDIVKQKILDDDLH--NDGFVLKPKSLHSWLTRVLYNRRSQFDPLWINAFVAG 273
+ + LH + + + L+ ++Y + L + + G
Sbjct: 130 WETWLGSQC---RLHELREKERISVAAASKILSNLVYQYKGA--GLSMGTMICG 178
Score = 51.7 bits (124), Expect = 5e-08
Identities = 27/109 (24%), Positives = 43/109 (39%), Gaps = 10/109 (9%)
Query: 59 RDARSGAKNGPSLGKYHDFPNVL-PHYFRRS-------GSFSTPLTTGTSVLGLVFNGGV 110
D +GA L P + P F R+ + GT+ L F GG+
Sbjct: 28 SDFVTGASQFQRLAPSLTVPPIASPQQFLRAHTDDSRNPDCKIKIAHGTTTLAFRFQGGI 87
Query: 111 ILAADSAGYYGSMMRFNDCPRIMQINKFTIL-GAGNDYADFQYLNDIVK 158
I+A DS G+ + ++++IN F + AG AD Q+ +
Sbjct: 88 IVAVDSRATAGNWVASQTVKKVIEINPFLLGTMAGG-AADCQFWETWLG 135
Score = 34.7 bits (80), Expect = 0.021
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Query: 4 TVDKLGTAYEDKILSFGFGTHIAVPLLRQETEKNPQMSKEEAIALIKTCMDLLYVRDARS 63
VD GT + I G G A +L ++ +S E+A+ L K + RDA S
Sbjct: 189 YVDSDGTRLKGDIFCVGSGQTFAYGVL--DSNYKWDLSVEDALYLGKRSILAAAHRDAYS 246
Query: 64 G 64
G
Sbjct: 247 G 247
>1ryp_H 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 3nzj_N*
3nzw_N* 3nzx_N* 1vsy_H 3l5q_B 1g65_N* 1fnt_H 1g0u_N*
1jd2_N* 1z7q_H 2f16_N* 2fak_N* 2fny_N* 2gpl_N* 2zcy_N*
3bdm_N* 3d29_N* 3dy3_N* 3dy4_N* 3e47_N* ...
Length = 205
Score = 54.5 bits (132), Expect = 3e-09
Identities = 26/113 (23%), Positives = 46/113 (40%), Gaps = 11/113 (9%)
Query: 164 LTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTIL-GAGNDYADFQYL 222
++ G S++ + F GVIL ADS G+ + ++ +++ +G+ AD Q +
Sbjct: 6 VSLGASIMAVTFKDGVILGADSRTTTGAYIANRVTDKLTRVHDKIWCCRSGS-AADTQAI 64
Query: 223 NDIVKQKILDDDLHNDGFVLKPKSLH--SWLTRVLYNRRSQFDPLWINAFVAG 273
DIV+ + P + S + Y + D L VAG
Sbjct: 65 ADIVQYHLELYTSQYG----TPSTETAASVFKELCYENK---DNLTAGIIVAG 110
Score = 53.0 bits (128), Expect = 1e-08
Identities = 18/68 (26%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 95 LTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTIL-GAGNDYADFQYL 153
++ G S++ + F GVIL ADS G+ + ++ +++ +G+ AD Q +
Sbjct: 6 VSLGASIMAVTFKDGVILGADSRTTTGAYIANRVTDKLTRVHDKIWCCRSGS-AADTQAI 64
Query: 154 NDIVKQKI 161
DIV+ +
Sbjct: 65 ADIVQYHL 72
Score = 34.9 bits (81), Expect = 0.016
Identities = 14/61 (22%), Positives = 22/61 (36%), Gaps = 2/61 (3%)
Query: 4 TVDKLGTAYEDKILSFGFGTHIAVPLLRQETEKNPQMSKEEAIALIKTCMDLLYVRDARS 63
T+ G+ ++ G G+ + MSKEE + IK + D S
Sbjct: 121 TIPLGGSVHKLPYAIAGSGSTFIYGYC--DKNFRENMSKEETVDFIKHSLSQAIKWDGSS 178
Query: 64 G 64
G
Sbjct: 179 G 179
>2jay_A Proteasome; hydrolase; 1.99A {Mycobacterium tuberculosis} PDB:
3mka_C 3mi0_C* 2fhg_H* 2fhh_H 3krd_C* 3mfe_G 3hfa_H*
3h6i_C 3h6f_C 3hf9_H 3mfe_H
Length = 291
Score = 54.9 bits (132), Expect = 5e-09
Identities = 18/87 (20%), Positives = 35/87 (40%), Gaps = 3/87 (3%)
Query: 78 PNVLPHYFRRSGSFSTP---LTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQ 134
P +LP + L GT+++ L + GGV++A D G+M+ D ++
Sbjct: 34 PELLPASISGGAPLAGGDAQLPHGTTIVALKYPGGVVMAGDRRSTQGNMISGRDVRKVYI 93
Query: 135 INKFTILGAGNDYADFQYLNDIVKQKI 161
+ +T G A + ++
Sbjct: 94 TDDYTATGIAGTAAVAVEFARLYAVEL 120
Score = 53.8 bits (129), Expect = 1e-08
Identities = 22/114 (19%), Positives = 45/114 (39%), Gaps = 6/114 (5%)
Query: 163 PLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYL 222
L GT+++ L + GGV++A D G+M+ D ++ + +T G A
Sbjct: 53 QLPHGTTIVALKYPGGVVMAGDRRSTQGNMISGRDVRKVYITDDYTATGIAGTAAVAVEF 112
Query: 223 NDIVKQKILDDDLH--NDGFVLKPKSLHSWLTRVLY-NRRSQFDPLWINAFVAG 273
+ ++ + + +G L + L ++ N + L +AG
Sbjct: 113 ARLYAVEL---EHYEKLEGVPLTFAGKINRLAIMVRGNLAAAMQGLLALPLLAG 163
Score = 28.3 bits (63), Expect = 2.6
Identities = 11/68 (16%), Positives = 23/68 (33%), Gaps = 6/68 (8%)
Query: 13 EDKILSFGFGTHIAVPLLRQETEKNPQMSKEEAIALIKTCMDLLYVRDARSGAKNGPSLG 72
E+ + G G+ A + + + + + + + D+ +G GP L
Sbjct: 190 EEGYQAVGSGSLFAKSSM--KKLYSQVTDGDSGLRVAVEALYDAADDDSATG---GPDLV 244
Query: 73 KYHDFPNV 80
FP
Sbjct: 245 -RGIFPTA 251
>3unf_N Proteasome subunit beta type-9; antigen presentation, drug
development, protein degradation, hydrolase-hydrolase
inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB:
3unh_N
Length = 199
Score = 53.4 bits (129), Expect = 8e-09
Identities = 21/109 (19%), Positives = 49/109 (44%), Gaps = 10/109 (9%)
Query: 168 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILG-AGNDYADFQYLNDIV 226
T+++ + F+GGV++ +DS G+ + ++ +++ +G+ AD Q + D+
Sbjct: 1 TTIMAVEFDGGVVVGSDSRVSAGTAVVNRVFDKLSPLHQRIFCALSGS-AADAQAIADMA 59
Query: 227 KQKILDDDLH--NDGFVLKPKSLHSWLTRVLYNRRSQFDPLWINAFVAG 273
++ +LH + + + + Y R + L + VAG
Sbjct: 60 AYQL---ELHGLELEEPPLVLAAANVVKNISYKYR---EDLLAHLIVAG 102
Score = 47.6 bits (114), Expect = 8e-07
Identities = 13/61 (21%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 99 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILG-AGNDYADFQYLNDIV 157
T+++ + F+GGV++ +DS G+ + ++ +++ +G+ AD Q + D+
Sbjct: 1 TTIMAVEFDGGVVVGSDSRVSAGTAVVNRVFDKLSPLHQRIFCALSGS-AADAQAIADMA 59
Query: 158 K 158
Sbjct: 60 A 60
Score = 31.0 bits (71), Expect = 0.31
Identities = 12/61 (19%), Positives = 17/61 (27%), Gaps = 2/61 (3%)
Query: 4 TVDKLGTAYEDKILSFGFGTHIAVPLLRQETEKNPQMSKEEAIALIKTCMDLLYVRDARS 63
G G G+ + + P M+ EE + L RD S
Sbjct: 112 YGTMGGMLIRQPFTIGGSGSSYIYGYV--DAAYKPGMTPEECRRFTTNAITLAMNRDGSS 169
Query: 64 G 64
G
Sbjct: 170 G 170
>1yar_H Proteasome beta subunit; proteasome 20S, PA26 proteasome activator
11S, hydrolase-HYD activator complex; 1.90A
{Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_H
1yau_H 3ipm_H 1pma_B 3jrm_H 3c92_H 3c91_H 3jse_H 3jtl_H
Length = 217
Score = 53.4 bits (129), Expect = 9e-09
Identities = 23/118 (19%), Positives = 51/118 (43%), Gaps = 9/118 (7%)
Query: 163 PLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTIL-GAGNDYADFQY 221
L TGT+ +G+ VI+A + + + + ++ QI+ +T + AG D Q
Sbjct: 4 TLETGTTTVGITLKDAVIMATERRVTMENFIMHKNGKKLFQIDTYTGMTIAGL-VGDAQV 62
Query: 222 LNDIVKQKILDDDLH--NDGFVLKPKSLHSWLTRVLYNRRSQFDPLWINAFVAGMQNG 277
L +K ++ +L+ + +++ + L+ +L + P + V G+
Sbjct: 63 LVRYMKAEL---ELYRLQRRVNMPIEAVATLLSNMLNQVKYM--PYMVQLLVGGIDTA 115
Score = 51.5 bits (124), Expect = 5e-08
Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Query: 94 PLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTIL-GAGNDYADFQY 152
L TGT+ +G+ VI+A + + + + ++ QI+ +T + AG D Q
Sbjct: 4 TLETGTTTVGITLKDAVIMATERRVTMENFIMHKNGKKLFQIDTYTGMTIAGL-VGDAQV 62
Query: 153 LNDIVK 158
L +K
Sbjct: 63 LVRYMK 68
Score = 32.2 bits (74), Expect = 0.11
Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Query: 4 TVDKLGTAYEDKILSFGFGTHIAVPLLRQETEKNPQMSKEEAIALIKTCMDLLYVRDARS 63
++D G + ED S G G+ +L E++ + +M+ +E + L+ + RD+ S
Sbjct: 120 SIDAAGGSVEDIYASTGSGSPFVYGVL--ESQYSEKMTVDEGVDLVIRAISAAKQRDSAS 177
Query: 64 G 64
G
Sbjct: 178 G 178
>1iru_H 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_N* 3une_N
Length = 205
Score = 51.8 bits (125), Expect = 2e-08
Identities = 25/109 (22%), Positives = 44/109 (40%), Gaps = 10/109 (9%)
Query: 168 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILG-AGNDYADFQYLNDIV 226
T+++ + F+GGV+L ADS GS + ++ I+ +G+ AD Q + D V
Sbjct: 1 TTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGS-AADTQAVADAV 59
Query: 227 KQKILDDDLH--NDGFVLKPKSLHSWLTRVLYNRRSQFDPLWINAFVAG 273
++ H + S + Y R + L +AG
Sbjct: 60 TYQL---GFHSIELNEPPLVHTAASLFKEMCYRYR---EDLMAGIIIAG 102
Score = 46.8 bits (112), Expect = 1e-06
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Query: 99 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILG-AGNDYADFQYLNDIV 157
T+++ + F+GGV+L ADS GS + ++ I+ +G+ AD Q + D V
Sbjct: 1 TTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGS-AADTQAVADAV 59
Query: 158 K 158
Sbjct: 60 T 60
Score = 33.3 bits (77), Expect = 0.051
Identities = 13/61 (21%), Positives = 20/61 (32%), Gaps = 2/61 (3%)
Query: 4 TVDKLGTAYEDKILSFGFGTHIAVPLLRQETEKNPQMSKEEAIALIKTCMDLLYVRDARS 63
+V G G G+ + + M+KEE + + L RD S
Sbjct: 113 SVPMGGMMVRQSFAIGGSGSSYIYGYV--DATYREGMTKEECLQFTANALALAMERDGSS 170
Query: 64 G 64
G
Sbjct: 171 G 171
>1ryp_L 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_L
1vsy_L 1z7q_L 3l5q_P 1g65_K* 1g0u_K* 1jd2_K* 2f16_K*
2fak_K* 2fny_K* 2gpl_K* 2zcy_K* 3bdm_K* 3d29_K* 3dy3_K*
3dy4_K* 3e47_K* 3gpj_K* 3gpt_K* 3gpw_K* ...
Length = 212
Score = 51.5 bits (124), Expect = 4e-08
Identities = 25/109 (22%), Positives = 46/109 (42%), Gaps = 9/109 (8%)
Query: 168 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTIL-GAGNDYADFQYLNDIV 226
T+ L F GG+I+A DS G+ + R+++IN F + AG AD Q+ +
Sbjct: 1 TTTLAFRFQGGIIVAVDSRATAGNWVASQTVKRVIEINPFLLGTMAGG-AADCQFWETWL 59
Query: 227 KQKILDDDLH--NDGFVLKPKSLHSWLTRVLYNRRSQFDPLWINAFVAG 273
+ LH + + + L+ ++Y + L + + G
Sbjct: 60 GSQC---RLHELREKERISVAAASKILSNLVYQYKGA--GLSMGTMICG 103
Score = 46.1 bits (110), Expect = 3e-06
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Query: 99 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTIL-GAGNDYADFQYLNDIV 157
T+ L F GG+I+A DS G+ + R+++IN F + AG AD Q+ +
Sbjct: 1 TTTLAFRFQGGIIVAVDSRATAGNWVASQTVKRVIEINPFLLGTMAGG-AADCQFWETWL 59
Query: 158 KQKI 161
+
Sbjct: 60 GSQC 63
Score = 35.7 bits (83), Expect = 0.009
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Query: 4 TVDKLGTAYEDKILSFGFGTHIAVPLLRQETEKNPQMSKEEAIALIKTCMDLLYVRDARS 63
VD GT + I G G A +L ++ +S E+A+ L K + RDA S
Sbjct: 114 YVDSDGTRLKGDIFCVGSGQTFAYGVL--DSNYKWDLSVEDALYLGKRSILAAAHRDAYS 171
Query: 64 G 64
G
Sbjct: 172 G 172
>1q5r_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide,
inter-subunit contacts, hydrolase; 3.10A {Rhodococcus
erythropolis} SCOP: d.153.1.4 PDB: 2h6j_H
Length = 294
Score = 51.9 bits (124), Expect = 6e-08
Identities = 20/115 (17%), Positives = 45/115 (39%), Gaps = 8/115 (6%)
Query: 163 PLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTIL-GAGNDYADFQY 221
GT+++ L + GGV+LA D G+++ D + ++++ AG
Sbjct: 61 LAPHGTTIVALTYKGGVLLAGDRRATQGNLIASRDVEAVYVTDEYSAAGIAGT-AGIAIE 119
Query: 222 LNDIVKQKILDDDLH--NDGFVLKPKSLHSWLTRVLY-NRRSQFDPLWINAFVAG 273
L + ++ + + +G L + L ++ N + L + + G
Sbjct: 120 LVRLFAVEL---EHYEKIEGVPLTFDGKANRLASMVRGNLGAAMQGLAVVPLLVG 171
Score = 49.2 bits (117), Expect = 4e-07
Identities = 16/88 (18%), Positives = 33/88 (37%), Gaps = 4/88 (4%)
Query: 77 FPNVLPHYFRRSGSFSTP--LTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQ 134
H R + GT+++ L + GGV+LA D G+++ D +
Sbjct: 42 RIGHRSHSTRGGDGMESGDLAPHGTTIVALTYKGGVLLAGDRRATQGNLIASRDVEAVYV 101
Query: 135 INKFTIL-GAGNDYADFQYLNDIVKQKI 161
++++ AG L + ++
Sbjct: 102 TDEYSAAGIAGT-AGIAIELVRLFAVEL 128
Score = 29.6 bits (66), Expect = 1.2
Identities = 13/65 (20%), Positives = 27/65 (41%), Gaps = 4/65 (6%)
Query: 2 LGTVDKLGTAYEDK--ILSFGFGTHIAVPLLRQETEKNPQMSKEEAIALIKTCMDLLYVR 59
+ + D +G YE++ + G G+ A L + +P +E A+ +
Sbjct: 185 IVSYDVVGGRYEERAGYHAVGSGSLFAKSAL--KKIYSPDSDEETALRAAIESLYDAADD 242
Query: 60 DARSG 64
D+ +G
Sbjct: 243 DSATG 247
>1j2q_H Proteasome beta subunit; ubiquitin, CP, hydrolase; HET: CIB; 2.83A
{Archaeoglobus fulgidus} SCOP: d.153.1.4
Length = 202
Score = 49.9 bits (120), Expect = 1e-07
Identities = 23/109 (21%), Positives = 48/109 (44%), Gaps = 9/109 (8%)
Query: 168 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILG-AGNDYADFQYLNDIV 226
T+ +GLV GV++A + G+ + +I QI + AG+ D Q+L I+
Sbjct: 1 TTTVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIADRMAMTTAGS-VGDAQFLARII 59
Query: 227 KQKILDDDLH--NDGFVLKPKSLHSWLTRVLYNRRSQFDPLWINAFVAG 273
K + +L+ +++ + + +L + R + P + + G
Sbjct: 60 KIEA---NLYEIRRERKPTVRAIATLTSNLLNSYR--YFPYLVQLLIGG 103
Score = 46.0 bits (110), Expect = 2e-06
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 99 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILG-AGNDYADFQYLNDIV 157
T+ +GLV GV++A + G+ + +I QI + AG+ D Q+L I+
Sbjct: 1 TTTVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIADRMAMTTAGS-VGDAQFLARII 59
Query: 158 K 158
K
Sbjct: 60 K 60
Score = 32.1 bits (74), Expect = 0.11
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Query: 4 TVDKLGTAYEDK-ILSFGFGTHIAVPLLRQETEKNPQMSKEEAIALIKTCMDLLYVRDAR 62
++D +G A E+K I++ G G+ A +L E P++ +EA+ L + RD+
Sbjct: 113 SIDPIGGAIEEKDIVATGSGSLTAYGVL--EDRFTPEIGVDEAVELAVRAIYSAMKRDSA 170
Query: 63 SG 64
SG
Sbjct: 171 SG 172
>3h4p_A Proteasome subunit alpha; core particle, cytoplasm, hydrolase,
protease, threonine protease; 4.10A {Methanocaldococcus
jannaschii}
Length = 264
Score = 49.9 bits (120), Expect = 1e-07
Identities = 3/109 (2%), Positives = 16/109 (14%), Gaps = 9/109 (8%)
Query: 168 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILG-AGNDYADFQYLNDIV 226
+ + + + + + + +
Sbjct: 2 SHMQMVPPSAYDRAITVFSPEGRLYQVEYAREAVRRGTTAIGIACKDG-VVLAVDRRITS 60
Query: 227 KQKILDDDLH--NDGFVLKPKSLHSWLTRVLYNRRSQFDPLWINAFVAG 273
K + + + D + A +
Sbjct: 61 KLVK---IRSIEKIFQIDDHVAAATSGLVADARVL--IDRARLEAQIYR 104
Score = 46.5 bits (111), Expect = 2e-06
Identities = 1/61 (1%), Positives = 9/61 (14%), Gaps = 2/61 (3%)
Query: 99 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILG-AGNDYADFQYLNDIV 157
+ + + + + + + +
Sbjct: 2 SHMQMVPPSAYDRAITVFSPEGRLYQVEYAREAVRRGTTAIGIACKDG-VVLAVDRRITS 60
Query: 158 K 158
K
Sbjct: 61 K 61
Score = 31.1 bits (71), Expect = 0.26
Identities = 4/62 (6%), Positives = 9/62 (14%), Gaps = 3/62 (4%)
Query: 4 TVDKLGTAYEDKI-LSFGFGTHIAVPLLRQETEKNPQMSKEEAIALIKTCMDLLYVRDAR 62
+ K + G L+ + E +
Sbjct: 115 MLAKKICDIKQAYTQHGGVRPFGVSLLI--AGIDKNEARLFETDPSGALIEYKATAIGSG 172
Query: 63 SG 64
Sbjct: 173 RP 174
>1iru_L 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_K* 3une_K 3unf_K* 3unh_K
Length = 204
Score = 49.1 bits (118), Expect = 2e-07
Identities = 21/109 (19%), Positives = 46/109 (42%), Gaps = 9/109 (8%)
Query: 168 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTIL-GAGNDYADFQYLNDIV 226
T+ L F GVI+AADS G+ + ++++IN + + AG AD + ++
Sbjct: 1 TTTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGG-AADCSFWERLL 59
Query: 227 KQKILDDDLH--NDGFVLKPKSLHSWLTRVLYNRRSQFDPLWINAFVAG 273
++ ++ + + + L ++Y + L + + G
Sbjct: 60 ARQC---RIYELRNKERISVAAASKLLANMVYQYKGM--GLSMGTMICG 103
Score = 46.0 bits (110), Expect = 3e-06
Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 99 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTIL-GAGNDYADFQYLNDIV 157
T+ L F GVI+AADS G+ + ++++IN + + AG AD + ++
Sbjct: 1 TTTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGG-AADCSFWERLL 59
Query: 158 K 158
Sbjct: 60 A 60
Score = 37.2 bits (87), Expect = 0.002
Identities = 15/61 (24%), Positives = 24/61 (39%), Gaps = 2/61 (3%)
Query: 4 TVDKLGTAYEDKILSFGFGTHIAVPLLRQETEKNPQMSKEEAIALIKTCMDLLYVRDARS 63
VD G S G G+ A ++ + + + E+A L + + RDA S
Sbjct: 113 YVDSEGNRISGATFSVGSGSVYAYGVM--DRGYSYDLEVEQAYDLARRAIYQATYRDAYS 170
Query: 64 G 64
G
Sbjct: 171 G 171
>1ryp_I 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1g0u_H*
1jd2_H* 1g65_H 1vsy_I 1z7q_I 2f16_H* 2fak_H* 2fny_H*
2gpl_H* 3d29_H* 3dy3_H* 3dy4_H* 3e47_H* 3gpj_H* 3gpt_H*
3gpw_H* 3hye_H* 3l5q_M 3mg0_H* 3mg4_H* ...
Length = 222
Score = 48.4 bits (116), Expect = 4e-07
Identities = 26/115 (22%), Positives = 51/115 (44%), Gaps = 10/115 (8%)
Query: 168 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTIL-GAGNDYADFQYLNDIV 226
T+++G+ FN GV++AAD+ G ++ +C ++ +I+ GAG AD + + ++
Sbjct: 1 TTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGT-AADTEAVTQLI 59
Query: 227 KQKILDDDLH--NDGFVLKPKSLHSWLTRVLYNRRSQFDPLWINAFVAGMQNGEP 279
I +LH + S L + L+ + + VAG+
Sbjct: 60 GSNI---ELHSLYTSREPRVVSALQMLKQHLFKYQ---GHIGAYLIVAGVDPTGS 108
Score = 45.7 bits (109), Expect = 4e-06
Identities = 17/61 (27%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Query: 99 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTIL-GAGNDYADFQYLNDIV 157
T+++G+ FN GV++AAD+ G ++ +C ++ +I+ GAG AD + + ++
Sbjct: 1 TTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGT-AADTEAVTQLI 59
Query: 158 K 158
Sbjct: 60 G 60
Score = 32.6 bits (75), Expect = 0.087
Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Query: 4 TVDKLGTAYEDKILSFGFGTHIAVPLLRQETEKNPQMSKEEAIALIKTCMDLLYVRDARS 63
++ G+ LS G G+ A+ +L E+ ++KEEAI L + D S
Sbjct: 112 SIHAHGSTDVGYYLSLGSGSLAAMAVL--ESHWKQDLTKEEAIKLASDAIQAGIWNDLGS 169
Query: 64 G 64
G
Sbjct: 170 G 170
>1q5q_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide,
inter-subunit contacts, RH erythropolis, hydrolase;
2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4
Length = 235
Score = 46.4 bits (110), Expect = 2e-06
Identities = 19/110 (17%), Positives = 45/110 (40%), Gaps = 8/110 (7%)
Query: 168 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTIL-GAGNDYADFQYLNDIV 226
T+++ L + GGV+LA D G+++ D ++ ++++ AG L +
Sbjct: 1 TTIVALTYKGGVLLAGDRRATQGNLIASRDVEKVYVTDEYSAAGIAGT-AGIAIELVRLF 59
Query: 227 KQKILDDDLH--NDGFVLKPKSLHSWLTRVLY-NRRSQFDPLWINAFVAG 273
++ + + +G L + L ++ N + L + + G
Sbjct: 60 AVEL---EHYEKIEGVPLTFDGKANRLASMVRGNLGAAMQGLAVVPLLVG 106
Score = 43.7 bits (103), Expect = 2e-05
Identities = 13/61 (21%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Query: 99 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTIL-GAGNDYADFQYLNDIV 157
T+++ L + GGV+LA D G+++ D ++ ++++ AG L +
Sbjct: 1 TTIVALTYKGGVLLAGDRRATQGNLIASRDVEKVYVTDEYSAAGIAGT-AGIAIELVRLF 59
Query: 158 K 158
Sbjct: 60 A 60
Score = 30.2 bits (68), Expect = 0.61
Identities = 13/65 (20%), Positives = 27/65 (41%), Gaps = 4/65 (6%)
Query: 2 LGTVDKLGTAYEDK--ILSFGFGTHIAVPLLRQETEKNPQMSKEEAIALIKTCMDLLYVR 59
+ + D +G YE++ + G G+ A L + +P +E A+ +
Sbjct: 120 IVSYDVVGGRYEERAGYHAVGSGSLFAKSAL--KKIYSPDSDEETALRAAIESLYDAADD 177
Query: 60 DARSG 64
D+ +G
Sbjct: 178 DSATG 182
>3unf_H Proteasome subunit beta type-10; antigen presentation, drug
development, protein degradation, hydrolase-hydrolase
inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB:
3unh_H
Length = 234
Score = 46.5 bits (111), Expect = 3e-06
Identities = 36/145 (24%), Positives = 51/145 (35%), Gaps = 37/145 (25%)
Query: 99 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTIL-GAGNDYADFQYLNDIV 157
T++ GLVF GVIL AD+ S++ C +I I GAG AD + +
Sbjct: 1 TTIAGLVFRDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGV-AADTEMTTRMA 59
Query: 158 -----------KQKITPLTTGTSVLGLVF-NGGVILAA------DSAG---YY----GSM 192
++ T + +F G + A+ D G Y GS
Sbjct: 60 ASKMELHALSTGREPRVATVTRILRQTLFRYQGHVGASLVVGGVDLNGPQLYEVHPHGSY 119
Query: 193 MRFNDCPRIMQINKFTILGAGNDYA 217
R FT LG+G A
Sbjct: 120 SRL----------PFTALGSGQGAA 134
Score = 32.6 bits (75), Expect = 0.086
Identities = 26/107 (24%), Positives = 36/107 (33%), Gaps = 14/107 (13%)
Query: 4 TVDKLGTAYEDKILSFGFGTHIAVPLLRQETEKNPQMSKEEAIALIKTCMDLLYVRDARS 63
V G+ + G G AV LL E P M+ E A L+ + + D S
Sbjct: 112 EVHPHGSYSRLPFTALGSGQGAAVALL--EDRFQPNMTLEAAQELLVEAITAGILSDLGS 169
Query: 64 G--------AKNGPSLGKYHDFPNVLPHYFRRSGSFSTPLTTGTSVL 102
G G L + P +R+G + T T VL
Sbjct: 170 GGNVDACVITAGGAKLQRALSTPTE---PVQRAGRYRFAPGT-TPVL 212
>1g3k_A ATP-dependent protease HSLV; hydrolase; 1.90A {Haemophilus
influenzae} SCOP: d.153.1.4 PDB: 1g3i_G 1jjw_A 1kyi_G*
1ofh_G* 1ofi_G* 1e94_A* 1g4a_B* 1g4b_M 1hqy_A* 1ht1_C*
1ht2_A* 1ned_A
Length = 174
Score = 34.6 bits (79), Expect = 0.017
Identities = 13/65 (20%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Query: 99 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTIL--GAGNDYADFQYLNDI 156
T+++ + NG V++ D G+ + + ++ ++ +L AG AD L ++
Sbjct: 1 TTIVSVRRNGQVVVGGDGQVSLGNTVMKGNARKVRRLYNGKVLAGFAGGT-ADAFTLFEL 59
Query: 157 VKQKI 161
++K+
Sbjct: 60 FERKL 64
Score = 34.6 bits (79), Expect = 0.017
Identities = 13/65 (20%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Query: 168 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTIL--GAGNDYADFQYLNDI 225
T+++ + NG V++ D G+ + + ++ ++ +L AG AD L ++
Sbjct: 1 TTIVSVRRNGQVVVGGDGQVSLGNTVMKGNARKVRRLYNGKVLAGFAGGT-ADAFTLFEL 59
Query: 226 VKQKI 230
++K+
Sbjct: 60 FERKL 64
>1q5q_A Proteasome alpha-type subunit 1; proteasome assembly, Pro-peptide,
inter-subunit contacts, RH erythropolis, hydrolase;
2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB:
2h6j_A 1q5r_A
Length = 259
Score = 33.0 bits (75), Expect = 0.075
Identities = 12/57 (21%), Positives = 22/57 (38%), Gaps = 8/57 (14%)
Query: 97 TGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYL 153
G SV+ L F GV+ A++ ++ ++ A Y +F+ L
Sbjct: 26 RGRSVVVLTFRDGVLFVAEN--------PSTALHKVSELYDRLGFAAVGKYNEFENL 74
Score = 33.0 bits (75), Expect = 0.075
Identities = 12/57 (21%), Positives = 22/57 (38%), Gaps = 8/57 (14%)
Query: 166 TGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYL 222
G SV+ L F GV+ A++ ++ ++ A Y +F+ L
Sbjct: 26 RGRSVVVLTFRDGVLFVAEN--------PSTALHKVSELYDRLGFAAVGKYNEFENL 74
>1m4y_A ATP-dependent protease HSLV; N-terminal catalytic threonine
residue, hydrolase; 2.10A {Thermotoga maritima} SCOP:
d.153.1.4
Length = 171
Score = 30.0 bits (67), Expect = 0.59
Identities = 15/66 (22%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Query: 99 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILG--AGNDYADFQYLNDI 156
T++L + NG ++ D +GS + + ++ ++ + +L AG+ AD L D
Sbjct: 1 TTILVVRRNGQTVMGGDGQVTFGSTVLKGNARKVRKLGEGKVLAGFAGSV-ADAMTLFDR 59
Query: 157 VKQKIT 162
+ K+
Sbjct: 60 FEAKLR 65
Score = 30.0 bits (67), Expect = 0.59
Identities = 15/66 (22%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Query: 168 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILG--AGNDYADFQYLNDI 225
T++L + NG ++ D +GS + + ++ ++ + +L AG+ AD L D
Sbjct: 1 TTILVVRRNGQTVMGGDGQVTFGSTVLKGNARKVRKLGEGKVLAGFAGSV-ADAMTLFDR 59
Query: 226 VKQKIL 231
+ K+
Sbjct: 60 FEAKLR 65
>1spu_A Copper amine oxidase; oxidoreductase, TPQ, periplasmic, signal;
HET: PAQ; 2.00A {Escherichia coli} SCOP: b.30.2.1
d.17.2.1 d.17.2.1 d.82.1.1 PDB: 1d6y_A* 1d6u_A* 1d6z_A*
2wgq_A 1oac_A* 1dyu_A* 2w0q_A* 2wo0_A* 2wof_A* 2woh_A*
1lvn_A* 1jrq_A* 1qak_A* 1qaf_A* 1qal_A*
Length = 727
Score = 30.6 bits (68), Expect = 0.62
Identities = 16/87 (18%), Positives = 34/87 (39%), Gaps = 6/87 (6%)
Query: 171 LGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYAD----FQYLNDIV 226
G+ VI + GY+ R++++ + +G GN +A + D+
Sbjct: 212 RGITDAKKVITTPLTVGYFDGKDGLKQDARLLKVISYLDVGDGNYWAHPIENLVAVVDLE 271
Query: 227 KQKILDDDLHNDGFVLKPKSLHSWLTR 253
++KI+ + V P + + R
Sbjct: 272 QKKIVKIE--EGPVVPVPMTARPFDGR 296
Score = 29.1 bits (64), Expect = 2.0
Identities = 13/65 (20%), Positives = 27/65 (41%), Gaps = 4/65 (6%)
Query: 102 LGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYAD----FQYLNDIV 157
G+ VI + GY+ R++++ + +G GN +A + D+
Sbjct: 212 RGITDAKKVITTPLTVGYFDGKDGLKQDARLLKVISYLDVGDGNYWAHPIENLVAVVDLE 271
Query: 158 KQKIT 162
++KI
Sbjct: 272 QKKIV 276
>2z3b_A ATP-dependent protease HSLV; N-terminal nucleophIle hydrolase;
2.50A {Bacillus subtilis} SCOP: d.153.1.4 PDB: 2z3a_A
1yyf_D* 3ty6_A
Length = 180
Score = 29.6 bits (66), Expect = 0.73
Identities = 20/132 (15%), Positives = 43/132 (32%), Gaps = 13/132 (9%)
Query: 98 GTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPR-IMQINKFTIL--GAGNDYADFQYLN 154
T++ + G ++ D +G + R + ++ +L AG+ AD L
Sbjct: 5 ATTIFAVQHKGRSAMSGDGQVTFGQAVVMKHTARKVRKLFNGKVLAGFAGS-VADAFTLF 63
Query: 155 DIVKQKIT----PLTTGTSVLGLVFNGGVILA-----ADSAGYYGSMMRFNDCPRIMQIN 205
+ + K+ L L + +L ++ I +
Sbjct: 64 EKFEAKLEEYNGNLKRAAVELAKEWRSDKVLRKLEAMLIVMNQDTLLLVSGTGEVIEPDD 123
Query: 206 KFTILGAGNDYA 217
+G+G +YA
Sbjct: 124 GILAIGSGGNYA 135
>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD
UDP; 2.00A {Plesiomonas shigelloides} PDB: 3ru9_A*
3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*
Length = 351
Score = 29.9 bits (68), Expect = 0.89
Identities = 13/69 (18%), Positives = 24/69 (34%), Gaps = 11/69 (15%)
Query: 120 YGSMMRFNDCPRIMQINKFT----------ILGAGNDYADFQYLNDIVKQKITPLTTGTS 169
+G + I K+T I G G DF Y++++++ I S
Sbjct: 206 FGRRQDP-NGAYAAVIPKWTAAMLKGDDVYINGDGETSRDFCYIDNVIQMNILSALAKDS 264
Query: 170 VLGLVFNGG 178
++N
Sbjct: 265 AKDNIYNVA 273
>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK,
UDP, N-acetylglucosamine, N- acetylgalactosamine,
UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas
aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*
Length = 352
Score = 29.5 bits (67), Expect = 1.2
Identities = 13/60 (21%), Positives = 24/60 (40%), Gaps = 2/60 (3%)
Query: 119 YYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKITPLTTGTSVLGLVFNGG 178
Y + ++ ++Q + I G G DF Y+ + V+ + T G V+N
Sbjct: 218 YAAVIPKWTS--SMIQGDDVYINGDGETSRDFCYIENTVQANLLAATAGLDARNQVYNIA 275
>1cq3_A Viral chemokine inhibitor; beta sandwich, cytokine; 1.85A {Cowpox
virus} SCOP: b.27.1.1 PDB: 2grk_A 2ffk_A 2fin_A
Length = 233
Score = 29.2 bits (64), Expect = 1.2
Identities = 13/53 (24%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
Query: 34 TEKNPQMSKEEAIALIKTCMDLLYVR----DARSGAKNGPSLGKYHDFPNVLP 82
+ +P +++EEA+++IK C + ++ + S K P LG V
Sbjct: 115 GKDSPAITREEALSMIKDCEMSINIKCSEEEKDSNIKTHPVLGSNISHKKVSY 167
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 28.9 bits (64), Expect = 2.7
Identities = 44/291 (15%), Positives = 76/291 (26%), Gaps = 109/291 (37%)
Query: 47 ALIKTCMDLLYVRDARSGAKNGPSLGKYHDF------PNVLP-HYFRRSGSFSTPLTTGT 99
LIK + L R+ + + P+ P + S S PL
Sbjct: 186 DLIKFSAETLS-ELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVI 244
Query: 100 S---------VLGL-------VFNG------GVILA-----ADS-AGYYGSMM------- 124
+LG G G++ A DS ++ S+
Sbjct: 245 QLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLF 304
Query: 125 ----RFNDC-------PRIMQINK----------FTILGAGNDYADFQYLNDIVKQKITP 163
R + P I++ + +I + + D V + +
Sbjct: 305 FIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNL-----TQEQVQDYVNKTNSH 359
Query: 164 LTTGTSV-LGLVFNGG---VILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGND---- 215
L G V + LV NG V+ +G S+ N + + K +G D
Sbjct: 360 LPAGKQVEISLV-NGAKNLVV-----SGPPQSLYGLN-----LTLRKAKA-PSGLDQSRI 407
Query: 216 ---------YADF---------QYLNDIVKQKILDDDLHNDGFVLKPKSLH 248
F L ++ DL + K +
Sbjct: 408 PFSERKLKFSNRFLPVASPFHSHLLVPASDL--INKDLVKNNVSFNAKDIQ 456
Score = 28.1 bits (62), Expect = 4.2
Identities = 17/58 (29%), Positives = 23/58 (39%), Gaps = 3/58 (5%)
Query: 142 GAGND-YADFQYLNDIVKQ--KITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFN 196
G G D Y + D+ + T G S+L +V N V L G G +R N
Sbjct: 1630 GMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIREN 1687
>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell
junction, membrane, phosphoprot domain, tight junction,
transmembrane; 2.40A {Homo sapiens}
Length = 92
Score = 26.6 bits (59), Expect = 3.2
Identities = 10/33 (30%), Positives = 15/33 (45%), Gaps = 3/33 (9%)
Query: 40 MSKEEAIALIKTCMD---LLYVRDARSGAKNGP 69
MS +A LI+ ++ RD R+ N P
Sbjct: 59 MSLTDAKTLIERSKGKLKMVVQRDERATLLNVP 91
>3mi0_A Proteasome subunit alpha; enzyme inhibitors, lactones, proteasome
endopeptidase comple mycobacterium tuberculosis,
hydrolase; HET: SA6; 2.20A {Mycobacterium tuberculosis}
PDB: 3h6f_A 3krd_A* 3h6i_A* 3mka_A 2fhh_A* 2fhg_A 3hfa_D
3hf9_A 3mfe_D
Length = 248
Score = 28.0 bits (62), Expect = 3.7
Identities = 11/56 (19%), Positives = 21/56 (37%), Gaps = 8/56 (14%)
Query: 98 GTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYL 153
SV+ L + GGV+ A++ +I ++ A + +F L
Sbjct: 27 AKSVVALAYAGGVLFVAEN--------PSRSLQKISELYDRVGFAAAGKFNEFDNL 74
Score = 28.0 bits (62), Expect = 3.7
Identities = 11/56 (19%), Positives = 21/56 (37%), Gaps = 8/56 (14%)
Query: 167 GTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYL 222
SV+ L + GGV+ A++ +I ++ A + +F L
Sbjct: 27 AKSVVALAYAGGVLFVAEN--------PSRSLQKISELYDRVGFAAAGKFNEFDNL 74
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 27.9 bits (61), Expect = 4.7
Identities = 37/240 (15%), Positives = 79/240 (32%), Gaps = 67/240 (27%)
Query: 12 YEDKILS-FGFGTHIAVPLL----RQETEKNPQ--MSKEEAIALIK--------TCMDLL 56
++ LS F HI LL + + ++K +L++ + +
Sbjct: 375 FDR--LSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIY 432
Query: 57 YVRDARSGAKNGPSLGKYHDFPNVLPHYFRRSGSFSTPLTTGTSVLGLVFNGGVILAADS 116
+ + +N +L H +++ HY S + + D
Sbjct: 433 --LELKVKLENEYAL---HR--SIVDHYNIPKTFDS--------------DDLIPPYLD- 470
Query: 117 AGY-YGSMMR-FNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKITPLTTGTSVLGLV 174
Y Y + + ++ F ++ + DF++L +QKI +T + G +
Sbjct: 471 -QYFYSHIGHHLKNIEHPERMTLFRMV-----FLDFRFL----EQKIRHDSTAWNASGSI 520
Query: 175 FNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADF--QYLNDIVKQKILD 232
N +Y + ND P+ ++ N DF + +++ K D
Sbjct: 521 LN----TLQQ-LKFYKPYICDND-PKYERLV--------NAILDFLPKIEENLICSKYTD 566
>3i9s_A Integron cassette protein; oyster POND, woods HOLE,
acetyltransferase, structural genomics, PSI-2, protein
structure initiative; 2.20A {Vibrio cholerae}
Length = 183
Score = 26.6 bits (59), Expect = 8.3
Identities = 5/45 (11%), Positives = 16/45 (35%), Gaps = 8/45 (17%)
Query: 196 NDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDLHNDGF 240
+ C ++ I + + + + ++ L + L + F
Sbjct: 32 HHCLDLVGIFI--------ELERYYFGDKAASEQDLANYLSHQVF 68
>1ur3_M Hypothetical oxidoreductase YDHF; NADP binding, aldo-keto
reductase; 2.57A {Escherichia coli} SCOP: c.1.7.1 PDB:
1og6_A*
Length = 319
Score = 26.8 bits (60), Expect = 9.4
Identities = 5/18 (27%), Positives = 10/18 (55%)
Query: 38 PQMSKEEAIALIKTCMDL 55
MS + ++ I+ +DL
Sbjct: 48 WNMSARQLVSFIEEHLDL 65
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.140 0.424
Gapped
Lambda K H
0.267 0.0790 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,465,711
Number of extensions: 273135
Number of successful extensions: 824
Number of sequences better than 10.0: 1
Number of HSP's gapped: 810
Number of HSP's successfully gapped: 94
Length of query: 279
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 187
Effective length of database: 4,133,061
Effective search space: 772882407
Effective search space used: 772882407
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (25.6 bits)