RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy9489
(279 letters)
>d1ryp2_ d.153.1.4 (2:) Proteasome beta subunit (catalytic) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 233
Score = 86.3 bits (213), Expect = 8e-21
Identities = 42/115 (36%), Positives = 70/115 (60%), Gaps = 4/115 (3%)
Query: 163 PLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYL 222
P+ TGTSV+ + ++ GVI+AAD+ G YGS++RFN R++ + T++G D +D Q++
Sbjct: 4 PIVTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHI 63
Query: 223 NDIVKQKI----LDDDLHNDGFVLKPKSLHSWLTRVLYNRRSQFDPLWINAFVAG 273
++K + D+ L + L+P + +L V+Y RRS+ +PLW VAG
Sbjct: 64 ERLLKDLVTENAYDNPLADAEEALEPSYIFEYLATVMYQRRSKMNPLWNAIIVAG 118
Score = 65.5 bits (159), Expect = 3e-13
Identities = 33/147 (22%), Positives = 63/147 (42%), Gaps = 4/147 (2%)
Query: 94 PLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYL 153
P+ TGTSV+ + ++ GVI+AAD+ G YGS++RFN R++ + T++G D +D Q++
Sbjct: 4 PIVTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHI 63
Query: 154 NDIVKQKITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAG 213
++K +T + + L Y + + + ++ + I+
Sbjct: 64 ERLLKDLVTENAYDNP----LADAEEALEPSYIFEYLATVMYQRRSKMNPLWNAIIVAGV 119
Query: 214 NDYADFQYLNDIVKQKILDDDLHNDGF 240
D + GF
Sbjct: 120 QSNGDQFLRYVNLLGVTYSSPTLATGF 146
Score = 44.0 bits (103), Expect = 7e-06
Identities = 27/67 (40%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
Query: 1 FLGTVDKLGTAYEDKILSFGFGTHIAVPLLRQETEKN---PQMSKEEAIALIKTCMDLLY 57
FL V+ LG Y L+ GFG H+A PLLR+ ++ P+ + + A I M +LY
Sbjct: 126 FLRYVNLLGVTYSSPTLATGFGAHMANPLLRKVVDRESDIPKTTVQVAEEAIVNAMRVLY 185
Query: 58 VRDARSG 64
RDARS
Sbjct: 186 YRDARSS 192
>d1iru2_ d.153.1.4 (2:) Proteasome beta subunit (catalytic) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 217
Score = 86.0 bits (212), Expect = 9e-21
Identities = 59/117 (50%), Positives = 83/117 (70%)
Query: 163 PLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYL 222
P+ TGTSVLG+ F GGV++AAD G YGS+ RF + RIM++N T+LGA DYADFQYL
Sbjct: 4 PMVTGTSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGASGDYADFQYL 63
Query: 223 NDIVKQKILDDDLHNDGFVLKPKSLHSWLTRVLYNRRSQFDPLWINAFVAGMQNGEP 279
++ Q ++D++L DG P+++HSWLTR +Y+RRS+ +PLW + G +GE
Sbjct: 64 KQVLGQMVIDEELLGDGHSYSPRAIHSWLTRAMYSRRSKMNPLWNTMVIGGYADGES 120
Score = 64.4 bits (156), Expect = 6e-13
Identities = 43/131 (32%), Positives = 67/131 (51%), Gaps = 8/131 (6%)
Query: 94 PLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYL 153
P+ TGTSVLG+ F GGV++AAD G YGS+ RF + RIM++N T+LGA DYADFQYL
Sbjct: 4 PMVTGTSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGASGDYADFQYL 63
Query: 154 NDIVKQKITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAG 213
++ Q + + G + + + + ++ ++ + ++G
Sbjct: 64 KQVLGQMVI--------DEELLGDGHSYSPRAIHSWLTRAMYSRRSKMNPLWNTMVIGGY 115
Query: 214 NDYADFQYLND 224
D F D
Sbjct: 116 ADGESFLGYVD 126
Score = 48.2 bits (114), Expect = 2e-07
Identities = 34/64 (53%), Positives = 44/64 (68%)
Query: 1 FLGTVDKLGTAYEDKILSFGFGTHIAVPLLRQETEKNPQMSKEEAIALIKTCMDLLYVRD 60
FLG VD LG AYE L+ G+G ++A PLLR+ EK P +S+ EA L++ CM +LY RD
Sbjct: 121 FLGYVDMLGVAYEAPSLATGYGAYLAQPLLREVLEKQPVLSQTEARDLVERCMRVLYYRD 180
Query: 61 ARSG 64
ARS
Sbjct: 181 ARSY 184
>d1rypk_ d.153.1.4 (K:) Proteasome beta subunit (catalytic) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 198
Score = 71.0 bits (173), Expect = 2e-15
Identities = 19/106 (17%), Positives = 43/106 (40%), Gaps = 1/106 (0%)
Query: 168 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVK 227
+LG+ VILA+ A G + + + Q++ T++ + D + ++
Sbjct: 2 DIILGIRVQDSVILASSKAVTRGISVLKDSDDKTRQLSPHTLMSFAGEAGDTVQFAEYIQ 61
Query: 228 QKILDDDLHNDGFVLKPKSLHSWLTRVLYNRRSQFDPLWINAFVAG 273
I + + L P+++ S++ + L P +N + G
Sbjct: 62 ANIQLYSIRE-DYELSPQAVSSFVRQELAKSIRSRRPYQVNVLIGG 106
Score = 57.9 bits (139), Expect = 8e-11
Identities = 11/62 (17%), Positives = 25/62 (40%)
Query: 99 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVK 158
+LG+ VILA+ A G + + + Q++ T++ + D + ++
Sbjct: 2 DIILGIRVQDSVILASSKAVTRGISVLKDSDDKTRQLSPHTLMSFAGEAGDTVQFAEYIQ 61
Query: 159 QK 160
Sbjct: 62 AN 63
Score = 40.1 bits (93), Expect = 8e-05
Identities = 18/64 (28%), Positives = 26/64 (40%), Gaps = 2/64 (3%)
Query: 1 FLGTVDKLGTAYEDKILSFGFGTHIAVPLLRQETEKNPQMSKEEAIALIKTCMDLLYVRD 60
L +D LGT E + G+ LL + P M+ EE + L+K C+ L R
Sbjct: 115 ELYQIDYLGTKVELPYGAHGYSGFYTFSLL--DHHYRPDMTTEEGLDLLKLCVQELEKRM 172
Query: 61 ARSG 64
Sbjct: 173 PMDF 176
>d1rypl_ d.153.1.4 (L:) Proteasome beta subunit (catalytic) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 212
Score = 64.8 bits (157), Expect = 3e-13
Identities = 22/109 (20%), Positives = 43/109 (39%), Gaps = 3/109 (2%)
Query: 168 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVK 227
T+ L F GG+I+A DS G+ + R+++IN F + AD Q+ +
Sbjct: 1 TTTLAFRFQGGIIVAVDSRATAGNWVASQTVKRVIEINPFLLGTMAGGAADCQFWETWLG 60
Query: 228 QKILDDDLHNDGFVLKPKSLHSWLTRVLYNRRSQFDPLWINAFVAGMQN 276
+ +L + + L+ ++Y + L + + G
Sbjct: 61 SQCRLHELRE-KERISVAAASKILSNLVYQYK--GAGLSMGTMICGYTR 106
Score = 54.8 bits (131), Expect = 1e-09
Identities = 17/62 (27%), Positives = 29/62 (46%)
Query: 99 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVK 158
T+ L F GG+I+A DS G+ + R+++IN F + AD Q+ +
Sbjct: 1 TTTLAFRFQGGIIVAVDSRATAGNWVASQTVKRVIEINPFLLGTMAGGAADCQFWETWLG 60
Query: 159 QK 160
+
Sbjct: 61 SQ 62
Score = 38.6 bits (89), Expect = 3e-04
Identities = 19/64 (29%), Positives = 26/64 (40%), Gaps = 2/64 (3%)
Query: 1 FLGTVDKLGTAYEDKILSFGFGTHIAVPLLRQETEKNPQMSKEEAIALIKTCMDLLYVRD 60
+ VD GT + I G G A +L +S E+A+ L K + RD
Sbjct: 111 TIYYVDSDGTRLKGDIFCVGSGQTFAYGVLDSN--YKWDLSVEDALYLGKRSILAAAHRD 168
Query: 61 ARSG 64
A SG
Sbjct: 169 AYSG 172
>d1q5qh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic)
{Rhodococcus erythropolis [TaxId: 1833]}
Length = 224
Score = 64.9 bits (157), Expect = 4e-13
Identities = 16/107 (14%), Positives = 40/107 (37%)
Query: 168 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVK 227
T+++ L + GGV+LA D G+++ D ++ ++++ G L +
Sbjct: 1 TTIVALTYKGGVLLAGDRRATQGNLIASRDVEKVYVTDEYSAAGIAGTAGIAIELVRLFA 60
Query: 228 QKILDDDLHNDGFVLKPKSLHSWLTRVLYNRRSQFDPLWINAFVAGM 274
++ + + + + V N + L + + G
Sbjct: 61 VELEHYEKIEGVPLTFDGKANRLASMVRGNLGAAMQGLAVVPLLVGY 107
Score = 54.9 bits (131), Expect = 1e-09
Identities = 12/62 (19%), Positives = 28/62 (45%)
Query: 99 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVK 158
T+++ L + GGV+LA D G+++ D ++ ++++ G L +
Sbjct: 1 TTIVALTYKGGVLLAGDRRATQGNLIASRDVEKVYVTDEYSAAGIAGTAGIAIELVRLFA 60
Query: 159 QK 160
+
Sbjct: 61 VE 62
Score = 37.1 bits (85), Expect = 0.001
Identities = 10/67 (14%), Positives = 20/67 (29%), Gaps = 2/67 (2%)
Query: 1 FLGTVDKLGTAYEDKILSFGFGTHIAVPLLRQETEKNPQMSKEEAIALIKTCMDLLYVRD 60
V + G G+ A L + +P +E A+ + D
Sbjct: 121 VSYDVVGGRYEERAGYHAVGSGSLFAKSAL--KKIYSPDSDEETALRAAIESLYDAADDD 178
Query: 61 ARSGAKN 67
+ +G +
Sbjct: 179 SATGGPD 185
>d1irul_ d.153.1.4 (L:) Proteasome beta subunit (catalytic) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 201
Score = 62.5 bits (151), Expect = 2e-12
Identities = 22/112 (19%), Positives = 45/112 (40%), Gaps = 3/112 (2%)
Query: 168 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVK 227
T+ L F GVI+AADS G+ + ++++IN + + AD + ++
Sbjct: 1 TTTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLA 60
Query: 228 QKILDDDLHNDGFVLKPKSLHSWLTRVLYNRRSQFDPLWINAFVAGMQNGEP 279
++ +L N + + L ++Y + L + + G P
Sbjct: 61 RQCRIYELRN-KERISVAAASKLLANMVYQY--KGMGLSMGTMICGWDKRGP 109
Score = 55.5 bits (133), Expect = 5e-10
Identities = 15/62 (24%), Positives = 30/62 (48%)
Query: 99 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVK 158
T+ L F GVI+AADS G+ + ++++IN + + AD + ++
Sbjct: 1 TTTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLA 60
Query: 159 QK 160
++
Sbjct: 61 RQ 62
Score = 37.0 bits (85), Expect = 0.001
Identities = 15/60 (25%), Positives = 24/60 (40%), Gaps = 2/60 (3%)
Query: 5 VDKLGTAYEDKILSFGFGTHIAVPLLRQETEKNPQMSKEEAIALIKTCMDLLYVRDARSG 64
VD G S G G+ A ++ + + + E+A L + + RDA SG
Sbjct: 114 VDSEGNRISGATFSVGSGSVYAYGVMDRGYSYD--LEVEQAYDLARRAIYQATYRDAYSG 171
>d1ryph_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 205
Score = 62.1 bits (150), Expect = 3e-12
Identities = 24/110 (21%), Positives = 42/110 (38%), Gaps = 5/110 (4%)
Query: 165 TTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLND 224
+ G S++ + F GVIL ADS G+ + ++ +++ AD Q + D
Sbjct: 7 SLGASIMAVTFKDGVILGADSRTTTGAYIANRVTDKLTRVHDKIWCCRSGSAADTQAIAD 66
Query: 225 IVKQKILDDDLHNDGFVLKPKSLHSWLTRVLYNRRSQFDPLWINAFVAGM 274
IV+ + ++ S + Y + D L VAG
Sbjct: 67 IVQYHLELYTSQYG--TPSTETAASVFKELCYENK---DNLTAGIIVAGY 111
Score = 54.7 bits (131), Expect = 1e-09
Identities = 17/64 (26%), Positives = 30/64 (46%)
Query: 96 TTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLND 155
+ G S++ + F GVIL ADS G+ + ++ +++ AD Q + D
Sbjct: 7 SLGASIMAVTFKDGVILGADSRTTTGAYIANRVTDKLTRVHDKIWCCRSGSAADTQAIAD 66
Query: 156 IVKQ 159
IV+
Sbjct: 67 IVQY 70
Score = 38.2 bits (88), Expect = 5e-04
Identities = 13/60 (21%), Positives = 21/60 (35%), Gaps = 2/60 (3%)
Query: 5 VDKLGTAYEDKILSFGFGTHIAVPLLRQETEKNPQMSKEEAIALIKTCMDLLYVRDARSG 64
+ G+ ++ G G+ + MSKEE + IK + D SG
Sbjct: 122 IPLGGSVHKLPYAIAGSGSTFIYGYCDKN--FRENMSKEETVDFIKHSLSQAIKWDGSSG 179
>d1yarh1 d.153.1.4 (H:1-203) Proteasome beta subunit (catalytic)
{Archaeon Thermoplasma acidophilum [TaxId: 2303]}
Length = 203
Score = 61.7 bits (149), Expect = 4e-12
Identities = 18/110 (16%), Positives = 45/110 (40%), Gaps = 3/110 (2%)
Query: 168 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVK 227
T+ +G+ VI+A + + + + ++ QI+ +T + D Q L +K
Sbjct: 1 TTTVGITLKDAVIMATERRVTMENFIMHKNGKKLFQIDTYTGMTIAGLVGDAQVLVRYMK 60
Query: 228 QKILDDDLHNDGFVLKPKSLHSWLTRVLYNRRSQFDPLWINAFVAGMQNG 277
++ L + +++ + L+ +L + + P + V G+
Sbjct: 61 AELELYRLQR-RVNMPIEAVATLLSNMLNQVK--YMPYMVQLLVGGIDTA 107
Score = 51.3 bits (122), Expect = 1e-08
Identities = 12/62 (19%), Positives = 27/62 (43%)
Query: 99 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVK 158
T+ +G+ VI+A + + + + ++ QI+ +T + D Q L +K
Sbjct: 1 TTTVGITLKDAVIMATERRVTMENFIMHKNGKKLFQIDTYTGMTIAGLVGDAQVLVRYMK 60
Query: 159 QK 160
+
Sbjct: 61 AE 62
Score = 34.8 bits (79), Expect = 0.006
Identities = 15/61 (24%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Query: 4 TVDKLGTAYEDKILSFGFGTHIAVPLLRQETEKNPQMSKEEAIALIKTCMDLLYVRDARS 63
++D G + ED S G G+ +L + + +M+ +E + L+ + RD+ S
Sbjct: 112 SIDAAGGSVEDIYASTGSGSPFVYGVLESQ--YSEKMTVDEGVDLVIRAISAAKQRDSAS 169
Query: 64 G 64
G
Sbjct: 170 G 170
>d1iruk_ d.153.1.4 (K:) Proteasome beta subunit (catalytic) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 199
Score = 61.4 bits (148), Expect = 5e-12
Identities = 16/107 (14%), Positives = 45/107 (42%), Gaps = 1/107 (0%)
Query: 168 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVK 227
++G+ V++A+D + +D ++ ++++ +L + D + ++
Sbjct: 2 EYLIGIQGPDYVLVASDRVAASNIVQMKDDHDKMFKMSEKILLLCVGEAGDTVQFAEYIQ 61
Query: 228 QKILDDDLHNDGFVLKPKSLHSWLTRVLYNRRSQFDPLWINAFVAGM 274
+ + +G+ L P + ++ R L + P +N +AG
Sbjct: 62 KNVQLYK-MRNGYELSPTAAANFTRRNLADCLRSRTPYHVNLLLAGY 107
Score = 51.0 bits (121), Expect = 2e-08
Identities = 7/62 (11%), Positives = 27/62 (43%)
Query: 99 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVK 158
++G+ V++A+D + +D ++ ++++ +L + D + ++
Sbjct: 2 EYLIGIQGPDYVLVASDRVAASNIVQMKDDHDKMFKMSEKILLLCVGEAGDTVQFAEYIQ 61
Query: 159 QK 160
+
Sbjct: 62 KN 63
Score = 31.8 bits (71), Expect = 0.055
Identities = 8/28 (28%), Positives = 16/28 (57%)
Query: 37 NPQMSKEEAIALIKTCMDLLYVRDARSG 64
P +S+E A+ L++ C++ L R +
Sbjct: 148 TPTISRERAVELLRKCLEELQKRFILNL 175
>d1ryp1_ d.153.1.4 (1:) Proteasome beta subunit (catalytic) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 222
Score = 61.4 bits (148), Expect = 6e-12
Identities = 20/109 (18%), Positives = 42/109 (38%), Gaps = 2/109 (1%)
Query: 166 TGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDI 225
G ++LG+ +LA D+ + P++ ++ A AD L
Sbjct: 8 NGGTILGIAGEDFAVLAGDTRNITDYSINSRYEPKVFDCGDNIVMSANGFAADGDALVKR 67
Query: 226 VKQKILDDDLHNDGFVLKPKSLHSWLTRVLYNRRSQFDPLWINAFVAGM 274
K + ++ L S + +LY + +F P +++ +AG+
Sbjct: 68 FKNSVKWYHFDHNDKKLSINSAARNIQHLLYGK--RFFPYYVHTIIAGL 114
Score = 52.9 bits (126), Expect = 6e-09
Identities = 12/64 (18%), Positives = 22/64 (34%)
Query: 97 TGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDI 156
G ++LG+ +LA D+ + P++ ++ A AD L
Sbjct: 8 NGGTILGIAGEDFAVLAGDTRNITDYSINSRYEPKVFDCGDNIVMSANGFAADGDALVKR 67
Query: 157 VKQK 160
K
Sbjct: 68 FKNS 71
Score = 37.1 bits (85), Expect = 0.001
Identities = 12/79 (15%), Positives = 27/79 (34%), Gaps = 15/79 (18%)
Query: 1 FLGTVDKLGTAYEDKILSFGFGTHIAVPLLRQE---------------TEKNPQMSKEEA 45
+ + D +G+ ++ + G + +P L + + +S EE
Sbjct: 121 AVYSFDPVGSYEREQCRAGGAAASLIMPFLDNQVNFKNQYEPGTNGKVKKPLKYLSVEEV 180
Query: 46 IALIKTCMDLLYVRDARSG 64
I L++ R + G
Sbjct: 181 IKLVRDSFTSATERHIQVG 199
>d1iruj_ d.153.1.4 (J:) Proteasome beta subunit (catalytic) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 204
Score = 60.6 bits (146), Expect = 1e-11
Identities = 23/108 (21%), Positives = 47/108 (43%), Gaps = 3/108 (2%)
Query: 167 GTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIV 226
G +V+ + V +AAD + + D +I + +G D Q + +
Sbjct: 7 GGAVMAMKGKNCVAIAADRRFGIQAQLVTTDFQKIFPMGDRLYIGLAGLATDVQTVAQRL 66
Query: 227 KQKILDDDLHNDGFVLKPKSLHSWLTRVLYNRRSQFDPLWINAFVAGM 274
K ++ + +G +KP +L S + +LY + +F P + +AG+
Sbjct: 67 KFRL-NLYELKEGRQIKPYTLMSMVANLLYEK--RFGPYYTEPVIAGL 111
Score = 52.9 bits (126), Expect = 4e-09
Identities = 12/62 (19%), Positives = 23/62 (37%)
Query: 98 GTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIV 157
G +V+ + V +AAD + + D +I + +G D Q + +
Sbjct: 7 GGAVMAMKGKNCVAIAADRRFGIQAQLVTTDFQKIFPMGDRLYIGLAGLATDVQTVAQRL 66
Query: 158 KQ 159
K
Sbjct: 67 KF 68
Score = 31.0 bits (69), Expect = 0.10
Identities = 12/64 (18%), Positives = 21/64 (32%), Gaps = 1/64 (1%)
Query: 1 FLGTVDKLGTAYEDKILSFGFGTHIAVPLLRQETEKNPQMSKEEAIALIKTCMDLLYVRD 60
F+ ++D +G + + + + P M + I M RD
Sbjct: 119 FICSLDLIGCPMVTDDFVVSGTCAEQMYGMCESLWE-PNMDPDHLFETISQAMLNAVDRD 177
Query: 61 ARSG 64
A SG
Sbjct: 178 AVSG 181
>d1irui_ d.153.1.4 (I:) Proteasome beta subunit (catalytic) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 220
Score = 59.0 bits (142), Expect = 4e-11
Identities = 16/112 (14%), Positives = 38/112 (33%), Gaps = 4/112 (3%)
Query: 168 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVK 227
T++ G+V+ G++L AD+ G ++ +C +I I+ AD ++
Sbjct: 1 TTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLIS 60
Query: 228 QKILDDDLHNDGFVLKPKSLHSWLTRVLYNRRSQFDPLWINAFVAGMQNGEP 279
+ L + + + + + + G+ P
Sbjct: 61 SNLELHSLSTG----RLPRVVTANRMLKQMLFRYRGYIGAALVLGGVDVTGP 108
Score = 53.6 bits (128), Expect = 3e-09
Identities = 13/62 (20%), Positives = 27/62 (43%)
Query: 99 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVK 158
T++ G+V+ G++L AD+ G ++ +C +I I+ AD ++
Sbjct: 1 TTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLIS 60
Query: 159 QK 160
Sbjct: 61 SN 62
Score = 39.0 bits (90), Expect = 2e-04
Identities = 17/93 (18%), Positives = 34/93 (36%), Gaps = 10/93 (10%)
Query: 3 GTVDKLGTAYEDKILSFGFGTHIAVPLLRQETEKNPQMSKEEAIALIKTCMDLLYVRDAR 62
++ G+ + ++ G G+ A+ + + + M +EEA L+ + D
Sbjct: 111 YSIYPHGSTDKLPYVTMGSGSLAAMAVFEDKFRPD--MEEEEAKNLVSEAIAAGIFNDLG 168
Query: 63 SGA--------KNGPSLGKYHDFPNVLPHYFRR 87
SG+ KN + + PN R
Sbjct: 169 SGSNIDLCVISKNKLDFLRPYTVPNKKGTRLGR 201
>d1q5qa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic)
{Rhodococcus erythropolis [TaxId: 1833]}
Length = 227
Score = 58.5 bits (141), Expect = 7e-11
Identities = 21/128 (16%), Positives = 40/128 (31%), Gaps = 9/128 (7%)
Query: 151 QYLNDIVKQKITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTIL 210
Q + D + + G SV+ L F GV+ A++ ++ ++
Sbjct: 3 QIMRDRSELARKGIARGRSVVVLTFRDGVLFVAEN--------PSTALHKVSELYDRLGF 54
Query: 211 GAGNDYADFQYLNDIVKQKILDDDLHNDGFVLKPKSLHSWLTRV-LYNRRSQFDPLWINA 269
A Y +F+ L D + +SL + + Q P +
Sbjct: 55 AAVGKYNEFENLRRAGIVHADMRGYSYDRRDVTGRSLANAYAQTLGTIFTEQPKPYEVEI 114
Query: 270 FVAGMQNG 277
VA +
Sbjct: 115 CVAEVGRV 122
Score = 46.6 bits (110), Expect = 7e-07
Identities = 12/65 (18%), Positives = 23/65 (35%), Gaps = 8/65 (12%)
Query: 95 LTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLN 154
+ G SV+ L F GV+ A++ ++ ++ A Y +F+ L
Sbjct: 16 IARGRSVVVLTFRDGVLFVAEN--------PSTALHKVSELYDRLGFAAVGKYNEFENLR 67
Query: 155 DIVKQ 159
Sbjct: 68 RAGIV 72
>d1iruh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 202
Score = 57.8 bits (139), Expect = 9e-11
Identities = 22/107 (20%), Positives = 40/107 (37%), Gaps = 4/107 (3%)
Query: 168 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVK 227
T+++ + F+GGV+L ADS GS + ++ I+ AD Q + D V
Sbjct: 1 TTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAVADAVT 60
Query: 228 QKILDDDLHNDGFVLKPKSLHSWLTRVLYNRRSQFDPLWINAFVAGM 274
++ + + S + Y + L +AG
Sbjct: 61 YQLGFHSIEL-NEPPLVHTAASLFKEMCYRY---REDLMAGIIIAGW 103
Score = 49.3 bits (117), Expect = 7e-08
Identities = 17/61 (27%), Positives = 28/61 (45%)
Query: 99 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVK 158
T+++ + F+GGV+L ADS GS + ++ I+ AD Q + D V
Sbjct: 1 TTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAVADAVT 60
Query: 159 Q 159
Sbjct: 61 Y 61
Score = 36.6 bits (84), Expect = 0.001
Identities = 13/64 (20%), Positives = 21/64 (32%), Gaps = 2/64 (3%)
Query: 1 FLGTVDKLGTAYEDKILSFGFGTHIAVPLLRQETEKNPQMSKEEAIALIKTCMDLLYVRD 60
+ +V G G G+ + + M+KEE + + L RD
Sbjct: 110 QVYSVPMGGMMVRQSFAIGGSGSSYIYGYV--DATYREGMTKEECLQFTANALALAMERD 167
Query: 61 ARSG 64
SG
Sbjct: 168 GSSG 171
>d1rypi_ d.153.1.4 (I:) Proteasome beta subunit (catalytic) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 222
Score = 57.1 bits (137), Expect = 2e-10
Identities = 21/112 (18%), Positives = 46/112 (41%), Gaps = 4/112 (3%)
Query: 168 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVK 227
T+++G+ FN GV++AAD+ G ++ +C ++ +I+ AD + + ++
Sbjct: 1 TTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIG 60
Query: 228 QKILDDDLHNDGFVLKPKSLHSWLTRVLYNRRSQFDPLWINAFVAGMQNGEP 279
I L+ + + S L + + + VAG+
Sbjct: 61 SNIELHSLYTS----REPRVVSALQMLKQHLFKYQGHIGAYLIVAGVDPTGS 108
Score = 52.9 bits (126), Expect = 6e-09
Identities = 14/62 (22%), Positives = 32/62 (51%)
Query: 99 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVK 158
T+++G+ FN GV++AAD+ G ++ +C ++ +I+ AD + + ++
Sbjct: 1 TTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIG 60
Query: 159 QK 160
Sbjct: 61 SN 62
Score = 38.6 bits (89), Expect = 3e-04
Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Query: 1 FLGTVDKLGTAYEDKILSFGFGTHIAVPLLRQETEKNPQMSKEEAIALIKTCMDLLYVRD 60
L ++ G+ LS G G+ A+ +L +++ ++KEEAI L + D
Sbjct: 109 HLFSIHAHGSTDVGYYLSLGSGSLAAMAVLESHWKQD--LTKEEAIKLASDAIQAGIWND 166
Query: 61 ARSGAK 66
SG+
Sbjct: 167 LGSGSN 172
>d1rypj_ d.153.1.4 (J:) Proteasome beta subunit (catalytic) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 204
Score = 56.3 bits (135), Expect = 3e-10
Identities = 24/108 (22%), Positives = 43/108 (39%), Gaps = 4/108 (3%)
Query: 167 GTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIV 226
G V+ + V +A D S+ N +I + G D LN++
Sbjct: 8 GGIVVAMTGKDCVAIACDLRLGSQSLGVSNKFEKIFHYGHVFLGITG-LATDVTTLNEMF 66
Query: 227 KQKILDDDLHNDGFVLKPKSLHSWLTRVLYNRRSQFDPLWINAFVAGM 274
+ K L + ++P++ ++ LY RR F P ++ VAG+
Sbjct: 67 RYKTNLYKL-KEERAIEPETFTQLVSSSLYERR--FGPYFVGPVVAGI 111
Score = 46.7 bits (110), Expect = 6e-07
Identities = 13/63 (20%), Positives = 22/63 (34%), Gaps = 1/63 (1%)
Query: 98 GTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIV 157
G V+ + V +A D S+ N +I + G D LN++
Sbjct: 8 GGIVVAMTGKDCVAIACDLRLGSQSLGVSNKFEKIFHYGHVFLGITG-LATDVTTLNEMF 66
Query: 158 KQK 160
+ K
Sbjct: 67 RYK 69
Score = 32.8 bits (74), Expect = 0.028
Identities = 13/62 (20%), Positives = 20/62 (32%), Gaps = 3/62 (4%)
Query: 4 TVDKLGTAYEDKILSFGF-GTHIAVPLLRQETEKNPQMSKEEAIALIKTCMDLLYVRDAR 62
D +G E K + + E+ P + E+ I + RDA
Sbjct: 122 GFDLIGCIDEAKDFIVSGTASDQLFGMC--ESLYEPNLEPEDLFETISQALLNAADRDAL 179
Query: 63 SG 64
SG
Sbjct: 180 SG 181
>d1m4ya_ d.153.1.4 (A:) HslV (ClpQ) protease {Thermotoga maritima
[TaxId: 2336]}
Length = 171
Score = 55.5 bits (133), Expect = 3e-10
Identities = 13/95 (13%), Positives = 31/95 (32%)
Query: 168 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVK 227
T++L + NG ++ D +GS + + ++ ++ + +L
Sbjct: 1 TTILVVRRNGQTVMGGDGQVTFGSTVLKGNARKVRKLGEGKVLAGFAGSVADAMTLFDRF 60
Query: 228 QKILDDDLHNDGFVLKPKSLHSWLTRVLYNRRSQF 262
+ L + N + RVL +
Sbjct: 61 EAKLREWGGNLTKAAVELAKDWRTDRVLRRLEALL 95
Score = 53.2 bits (127), Expect = 2e-09
Identities = 17/129 (13%), Positives = 38/129 (29%), Gaps = 10/129 (7%)
Query: 99 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVK 158
T++L + NG ++ D +GS + + ++ ++ + +L
Sbjct: 1 TTILVVRRNGQTVMGGDGQVTFGSTVLKGNARKVRKLGEGKVLAGFAGSVADAMTLFDRF 60
Query: 159 QKITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQIN----------KFT 208
+ G V +++ D I I+
Sbjct: 61 EAKLREWGGNLTKAAVELAKDWRTDRVLRRLEALLLVADKENIFIISGNGEVIQPDDDAA 120
Query: 209 ILGAGNDYA 217
+G+G YA
Sbjct: 121 AIGSGGPYA 129
>d1irue_ d.153.1.4 (E:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 234
Score = 56.2 bits (135), Expect = 4e-10
Identities = 17/120 (14%), Positives = 39/120 (32%), Gaps = 7/120 (5%)
Query: 166 TGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDI 225
G++ +G+ + GV LA + +M + +I++I+ AD + L D
Sbjct: 26 LGSTAIGIQTSEGVCLAVEKRITSP-LMEPSSIEKIVEIDAHIGCAMSGLIADAKTLIDK 84
Query: 226 VKQKILDDDLHND------GFVLKPKSLHSWLTRVLYNRRSQFDPLWINAFVAGMQNGEP 279
+ + + + +L + + P + G+ P
Sbjct: 85 ARVETQNHWFTYNETMTVESVTQAVSNLALQFGEEDADPGAMSRPFGVALLFGGVDEKGP 144
Score = 41.6 bits (97), Expect = 4e-05
Identities = 13/65 (20%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
Query: 97 TGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDI 156
G++ +G+ + GV LA + +M + +I++I+ AD + L D
Sbjct: 26 LGSTAIGIQTSEGVCLAVEKRITSP-LMEPSSIEKIVEIDAHIGCAMSGLIADAKTLIDK 84
Query: 157 VKQKI 161
+ +
Sbjct: 85 ARVET 89
>d1iru1_ d.153.1.4 (1:) Proteasome beta subunit (catalytic) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 213
Score = 55.7 bits (133), Expect = 6e-10
Identities = 22/109 (20%), Positives = 51/109 (46%), Gaps = 3/109 (2%)
Query: 166 TGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDI 225
G ++L + I+A+D+ G + D P+ ++ T++G + D L I
Sbjct: 8 NGGTILAIAGEDFAIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKI 67
Query: 226 VKQKILDDDLHNDGFVLKPKSLHSWLTRVLYNRRSQFDPLWINAFVAGM 274
++ L H++ + ++ + L+ +LY+R +F P ++ + G+
Sbjct: 68 IEA-RLKMYKHSNNKAMTTGAIAAMLSTILYSR--RFFPYYVYNIIGGL 113
Score = 49.5 bits (117), Expect = 7e-08
Identities = 13/65 (20%), Positives = 30/65 (46%)
Query: 97 TGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDI 156
G ++L + I+A+D+ G + D P+ ++ T++G + D L I
Sbjct: 8 NGGTILAIAGEDFAIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKI 67
Query: 157 VKQKI 161
++ ++
Sbjct: 68 IEARL 72
Score = 34.1 bits (77), Expect = 0.012
Identities = 14/69 (20%), Positives = 28/69 (40%), Gaps = 7/69 (10%)
Query: 3 GTVDKLGTAYEDKILSFGFGTHIAVPLLR-------QETEKNPQMSKEEAIALIKTCMDL 55
+ D +G+ D + G + + PLL + ++ +S + A+ L+K
Sbjct: 122 YSFDPVGSYQRDSFKAGGSASAMLQPLLDNQVGFKNMQNVEHVPLSLDRAMRLVKDVFIS 181
Query: 56 LYVRDARSG 64
RD +G
Sbjct: 182 AAERDVYTG 190
>d1rypd_ d.153.1.4 (D:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 241
Score = 55.4 bits (133), Expect = 1e-09
Identities = 16/110 (14%), Positives = 35/110 (31%), Gaps = 1/110 (0%)
Query: 166 TGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDI 225
GT +G+ V+L + ++ +I+ +L AD + L +
Sbjct: 27 RGTCAVGVKGKNCVVLGCERRSTLKLQDTRITPSKVSKIDSHVVLSFSGLNADSRILIEK 86
Query: 226 VKQKILDDDLHNDGFVLKPKSLHSW-LTRVLYNRRSQFDPLWINAFVAGM 274
+ + L + V + Y + P ++ +AG
Sbjct: 87 ARVEAQSHRLTLEDPVTVEYLTRYVAGVQQRYTQSGGVRPFGVSTLIAGF 136
Score = 44.3 bits (104), Expect = 5e-06
Identities = 10/63 (15%), Positives = 22/63 (34%)
Query: 97 TGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDI 156
GT +G+ V+L + ++ +I+ +L AD + L +
Sbjct: 27 RGTCAVGVKGKNCVVLGCERRSTLKLQDTRITPSKVSKIDSHVVLSFSGLNADSRILIEK 86
Query: 157 VKQ 159
+
Sbjct: 87 ARV 89
>d1j2qh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic)
{Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 202
Score = 54.8 bits (131), Expect = 1e-09
Identities = 17/107 (15%), Positives = 41/107 (38%), Gaps = 3/107 (2%)
Query: 168 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVK 227
T+ +GLV GV++A + G+ + +I QI + D Q+ +
Sbjct: 1 TTTVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIADRMAMTTAGSVGDAQF-LARII 59
Query: 228 QKILDDDLHNDGFVLKPKSLHSWLTRVLYNRRSQFDPLWINAFVAGM 274
+ + +++ + + +L + R + P + + G+
Sbjct: 60 KIEANLYEIRRERKPTVRAIATLTSNLLNSYR--YFPYLVQLLIGGI 104
Score = 49.0 bits (116), Expect = 1e-07
Identities = 13/54 (24%), Positives = 23/54 (42%)
Query: 99 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQY 152
T+ +GLV GV++A + G+ + +I QI + D Q+
Sbjct: 1 TTTVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIADRMAMTTAGSVGDAQF 54
Score = 35.2 bits (80), Expect = 0.004
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Query: 1 FLGTVDKLGTAYEDK-ILSFGFGTHIAVPLLRQETEKNPQMSKEEAIALIKTCMDLLYVR 59
+ ++D +G A E+K I++ G G+ A +L P++ +EA+ L + R
Sbjct: 110 SIYSIDPIGGAIEEKDIVATGSGSLTAYGVLEDR--FTPEIGVDEAVELAVRAIYSAMKR 167
Query: 60 DARSG 64
D+ SG
Sbjct: 168 DSASG 172
>d1yara1 d.153.1.4 (A:13-233) Proteasome alpha subunit
(non-catalytic) {Archaeon Thermoplasma acidophilum
[TaxId: 2303]}
Length = 221
Score = 54.7 bits (131), Expect = 1e-09
Identities = 22/116 (18%), Positives = 46/116 (39%), Gaps = 4/116 (3%)
Query: 166 TGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDI 225
G++ LG+ F GV+L +D ++ N +I I+ + AD + L D
Sbjct: 21 KGSTALGMKFANGVLLISDKK-VRSRLIEQNSIEKIQLIDDYVAAVTSGLVADARVLVDF 79
Query: 226 VKQKILDDDLHNDGFVLKPKSLHSWLTRVL--YNRRSQFDPLWINAFVAGMQNGEP 279
+ + + G ++ ++L + + Y + P ++ AG+ P
Sbjct: 80 ARISAQQEKV-TYGSLVNIENLVKRVADQMQQYTQYGGVRPYGVSLIFAGIDQIGP 134
Score = 42.8 bits (100), Expect = 1e-05
Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Query: 97 TGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDI 156
G++ LG+ F GV+L +D ++ N +I I+ + AD + L D
Sbjct: 21 KGSTALGMKFANGVLLISDKK-VRSRLIEQNSIEKIQLIDDYVAAVTSGLVADARVLVDF 79
Query: 157 VKQ 159
+
Sbjct: 80 ARI 82
>d1rypc_ d.153.1.4 (C:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 244
Score = 54.3 bits (130), Expect = 2e-09
Identities = 14/109 (12%), Positives = 41/109 (37%), Gaps = 1/109 (0%)
Query: 166 TGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDI 225
+ +G++ + G++LAA+ + + ++ ++N + AD + L +
Sbjct: 30 HAGTAIGIMASDGIVLAAERKVTSTLLEQDTSTEKLYKLNDKIAVAVAGLTADAEILINT 89
Query: 226 VKQKILDDDL-HNDGFVLKPKSLHSWLTRVLYNRRSQFDPLWINAFVAG 273
+ + +N+ ++ + Y + P ++ AG
Sbjct: 90 ARIHAQNYLKTYNEDIPVEILVRRLSDIKQGYTQHGGLRPFGVSFIYAG 138
Score = 45.5 bits (107), Expect = 2e-06
Identities = 9/63 (14%), Positives = 27/63 (42%)
Query: 97 TGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDI 156
+ +G++ + G++LAA+ + + ++ ++N + AD + L +
Sbjct: 30 HAGTAIGIMASDGIVLAAERKVTSTLLEQDTSTEKLYKLNDKIAVAVAGLTADAEILINT 89
Query: 157 VKQ 159
+
Sbjct: 90 ARI 92
Score = 37.0 bits (85), Expect = 0.001
Identities = 15/64 (23%), Positives = 23/64 (35%), Gaps = 2/64 (3%)
Query: 1 FLGTVDKLGTAYEDKILSFGFGTHIAVPLLRQETEKNPQMSKEEAIALIKTCMDLLYVRD 60
L T + G K +S G T A LL + + M ++AI L +
Sbjct: 146 QLYTSNPSGNYTGWKAISVGANTSAAQTLL--QMDYKDDMKVDDAIELALKTLSKTTDSS 203
Query: 61 ARSG 64
A +
Sbjct: 204 ALTY 207
>d1iruc_ d.153.1.4 (C:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 250
Score = 53.1 bits (127), Expect = 5e-09
Identities = 16/110 (14%), Positives = 38/110 (34%), Gaps = 1/110 (0%)
Query: 166 TGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDI 225
+ LG++ N GV+LAA+ + + +I ++N+ +D L +
Sbjct: 29 HAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLNEDMACSVAGITSDANVLTNE 88
Query: 226 VKQKILDDDL-HNDGFVLKPKSLHSWLTRVLYNRRSQFDPLWINAFVAGM 274
++ L + + + + Y + P ++ G
Sbjct: 89 LRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQFGGKRPFGVSLLYIGW 138
Score = 45.4 bits (107), Expect = 2e-06
Identities = 12/63 (19%), Positives = 27/63 (42%)
Query: 97 TGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDI 156
+ LG++ N GV+LAA+ + + +I ++N+ +D L +
Sbjct: 29 HAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLNEDMACSVAGITSDANVLTNE 88
Query: 157 VKQ 159
++
Sbjct: 89 LRL 91
>d1rype_ d.153.1.4 (E:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 242
Score = 52.4 bits (125), Expect = 1e-08
Identities = 15/115 (13%), Positives = 40/115 (34%), Gaps = 8/115 (6%)
Query: 166 TGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDI 225
G++ +G+ GV+L + ++ + +I++I++ AD + + +
Sbjct: 25 LGSTAIGIATKEGVVLGVEKRATSP-LLESDSIEKIVEIDRHIGCAMSGLTADARSMIEH 83
Query: 226 VKQKI------LDDDLHNDGFVLKPKS-LHSWLTRVLYNRRSQFDPLWINAFVAG 273
+ D+D++ + + R P + +AG
Sbjct: 84 ARTAAVTHNLYYDEDINVESLTQSVCDLALRFGEGASGEERLMSRPFGVALLIAG 138
Score = 45.1 bits (106), Expect = 2e-06
Identities = 9/65 (13%), Positives = 27/65 (41%), Gaps = 1/65 (1%)
Query: 97 TGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDI 156
G++ +G+ GV+L + ++ + +I++I++ AD + + +
Sbjct: 25 LGSTAIGIATKEGVVLGVEKRATSP-LLESDSIEKIVEIDRHIGCAMSGLTADARSMIEH 83
Query: 157 VKQKI 161
+
Sbjct: 84 ARTAA 88
>d1irub_ d.153.1.4 (B:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 233
Score = 52.0 bits (124), Expect = 1e-08
Identities = 16/115 (13%), Positives = 36/115 (31%), Gaps = 2/115 (1%)
Query: 166 TGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDI 225
G +G+ GV+LA + + ++ I K L D++ L
Sbjct: 30 GGAPSVGIKAANGVVLATEKKQKSI-LYDERSVHKVEPITKHIGLVYSGMGPDYRVLVHR 88
Query: 226 VKQKILDDDLHNDGFVLKPKSLHSWLTRVLYNRR-SQFDPLWINAFVAGMQNGEP 279
++ L + + + + + + P ++ + G G P
Sbjct: 89 ARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQSGGVRPFGVSLLICGWNEGRP 143
Score = 42.4 bits (99), Expect = 2e-05
Identities = 11/65 (16%), Positives = 22/65 (33%), Gaps = 1/65 (1%)
Query: 97 TGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDI 156
G +G+ GV+LA + + ++ I K L D++ L
Sbjct: 30 GGAPSVGIKAANGVVLATEKKQKSI-LYDERSVHKVEPITKHIGLVYSGMGPDYRVLVHR 88
Query: 157 VKQKI 161
++
Sbjct: 89 ARKLA 93
>d1j2pa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic)
{Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 243
Score = 51.2 bits (122), Expect = 2e-08
Identities = 20/112 (17%), Positives = 44/112 (39%), Gaps = 2/112 (1%)
Query: 166 TGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDI 225
G + +G+ GVIL AD ++ + +I +I++ AD + L D
Sbjct: 30 RGATAIGIKCKEGVILIADKRVGSK-LLEKDTIEKIYKIDEHICAATSGLVADARVLIDR 88
Query: 226 VKQKILDDDL-HNDGFVLKPKSLHSWLTRVLYNRRSQFDPLWINAFVAGMQN 276
+ + + L ++ +K + + Y + P ++ +AG+
Sbjct: 89 ARIEAQINRLTYDIPITVKELAKKICDFKQQYTQYGGVRPFGVSLLIAGVNE 140
Score = 41.2 bits (96), Expect = 6e-05
Identities = 14/65 (21%), Positives = 27/65 (41%), Gaps = 1/65 (1%)
Query: 97 TGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDI 156
G + +G+ GVIL AD ++ + +I +I++ AD + L D
Sbjct: 30 RGATAIGIKCKEGVILIADKRVGSK-LLEKDTIEKIYKIDEHICAATSGLVADARVLIDR 88
Query: 157 VKQKI 161
+ +
Sbjct: 89 ARIEA 93
Score = 34.6 bits (79), Expect = 0.008
Identities = 14/64 (21%), Positives = 20/64 (31%), Gaps = 2/64 (3%)
Query: 1 FLGTVDKLGTAYEDKILSFGFGTHIAVPLLRQETEKNPQMSKEEAIALIKTCMDLLYVRD 60
L D G E K + G G E E +S ++A+ L M L +
Sbjct: 143 KLYETDPSGALLEYKATAIGMGRMAVTEF--FEKEYRDDLSFDDAMVLGLVAMGLSIESE 200
Query: 61 ARSG 64
Sbjct: 201 LVPE 204
>d1rypg_ d.153.1.4 (G:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 244
Score = 51.2 bits (122), Expect = 3e-08
Identities = 13/116 (11%), Positives = 38/116 (32%), Gaps = 4/116 (3%)
Query: 166 TGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDI 225
GT+ +G+ N GV+ A + ++ +I +++ D ++L +
Sbjct: 29 NGTTSIGIKCNDGVVFAVEKLITSK-LLVPQKNVKIQVVDRHIGCVYSGLIPDGRHLVNR 87
Query: 226 VKQKILDDDLHNDGFVLKPKSLHSWLTRVL--YNRRSQFDPLWINAFVAGMQNGEP 279
++ + + L + + + + P ++ G+
Sbjct: 88 G-REEAASFKKLYKTPIPIPAFADRLGQYVQAHTLYNSVRPFGVSTIFGGVDKNGA 142
Score = 40.0 bits (93), Expect = 1e-04
Identities = 10/63 (15%), Positives = 26/63 (41%), Gaps = 1/63 (1%)
Query: 97 TGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDI 156
GT+ +G+ N GV+ A + ++ +I +++ D ++L +
Sbjct: 29 NGTTSIGIKCNDGVVFAVEKLITSK-LLVPQKNVKIQVVDRHIGCVYSGLIPDGRHLVNR 87
Query: 157 VKQ 159
++
Sbjct: 88 GRE 90
Score = 35.8 bits (82), Expect = 0.004
Identities = 11/67 (16%), Positives = 23/67 (34%), Gaps = 1/67 (1%)
Query: 1 FLGTVDKLGTAYEDKILSFGFGTHIAVPLL-RQETEKNPQMSKEEAIALIKTCMDLLYVR 59
L ++ G+ + K + G G A L + +S EA+ + L +
Sbjct: 143 HLYMLEPSGSYWGYKGAATGKGRQSAKAELEKLVDHHPEGLSAREAVKQAAKIIYLAHED 202
Query: 60 DARSGAK 66
+ +
Sbjct: 203 NKEKDFE 209
>d1g3ka_ d.153.1.4 (A:) HslV (ClpQ) protease {Haemophilus influenzae
[TaxId: 727]}
Length = 173
Score = 49.4 bits (117), Expect = 5e-08
Identities = 16/130 (12%), Positives = 45/130 (34%), Gaps = 11/130 (8%)
Query: 99 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVK 158
T+++ + NG V++ D G+ + + ++ ++ +L + +
Sbjct: 1 TTIVSVRRNGQVVVGGDGQVSLGNTVMKGNARKVRRLYNGKVLAGFAGGTADAFTLFELF 60
Query: 159 QKITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQI-----------NKF 207
++ + G + V + +M+ D + I ++
Sbjct: 61 ERKLEMHQGHLLKSAVELAKDWRTDRALRKLEAMLIVADEKESLIITGIGDVVQPEEDQI 120
Query: 208 TILGAGNDYA 217
+G+G +YA
Sbjct: 121 LAIGSGGNYA 130
Score = 48.2 bits (114), Expect = 1e-07
Identities = 14/100 (14%), Positives = 36/100 (36%), Gaps = 3/100 (3%)
Query: 168 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTIL-GAGNDYADFQYLNDIV 226
T+++ + NG V++ D G+ + + ++ ++ +L G AD L ++
Sbjct: 1 TTIVSVRRNGQVVVGGDGQVSLGNTVMKGNARKVRRLYNGKVLAGFAGGTADAFTLFELF 60
Query: 227 KQKILDDDLHNDGFVLKPKSLHSWLTRVLYNRRSQFDPLW 266
++K+ + W T + +
Sbjct: 61 ERKLEMH--QGHLLKSAVELAKDWRTDRALRKLEAMLIVA 98
>d1rypb_ d.153.1.4 (B:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 250
Score = 49.7 bits (118), Expect = 9e-08
Identities = 16/110 (14%), Positives = 37/110 (33%), Gaps = 3/110 (2%)
Query: 166 TGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDI 225
G + LG+ GV++A + + ++ + D++ L D
Sbjct: 30 QGVTSLGIKATNGVVIATEKKSSSP-LAMSETLSKVSLLTPDIGAVYSGMGPDYRVLVDK 88
Query: 226 VKQKILDDDLHNDGFVLKPKSLHSWLTRVLYN--RRSQFDPLWINAFVAG 273
++ G K L S + +++ + P ++ +AG
Sbjct: 89 SRKVAHTSYKRIYGEYPPTKLLVSEVAKIMQEATQSGGVRPFGVSLLIAG 138
Score = 36.2 bits (83), Expect = 0.002
Identities = 9/63 (14%), Positives = 22/63 (34%), Gaps = 1/63 (1%)
Query: 97 TGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDI 156
G + LG+ GV++A + + ++ + D++ L D
Sbjct: 30 QGVTSLGIKATNGVVIATEKKSSSP-LAMSETLSKVSLLTPDIGAVYSGMGPDYRVLVDK 88
Query: 157 VKQ 159
++
Sbjct: 89 SRK 91
>d1iruf_ d.153.1.4 (F:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 238
Score = 49.3 bits (117), Expect = 1e-07
Identities = 17/115 (14%), Positives = 38/115 (33%), Gaps = 4/115 (3%)
Query: 166 TGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDI 225
G++ +GL +L A +I+ ++ + AD + L +
Sbjct: 28 QGSATVGLKSKTHAVLVALK---RAQSELAAHQKKILHVDNHIGISIAGLTADARLLCNF 84
Query: 226 VKQKILDDDL-HNDGFVLKPKSLHSWLTRVLYNRRSQFDPLWINAFVAGMQNGEP 279
++Q+ LD + + + +R P + +AG + P
Sbjct: 85 MRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYDDMGP 139
Score = 36.2 bits (83), Expect = 0.002
Identities = 6/65 (9%), Positives = 21/65 (32%), Gaps = 1/65 (1%)
Query: 1 FLGTVDKLGTAYEDKILSFGFGTHIAVPLLRQETEKNPQMSKEEAIAL-IKTCMDLLYVR 59
+ ++ + +S G + A L + + + + E + ++ + L
Sbjct: 140 HIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFMECNLNELVKHGLRALRETLPAE 199
Query: 60 DARSG 64
+
Sbjct: 200 QDLTT 204
Score = 34.2 bits (78), Expect = 0.011
Identities = 10/63 (15%), Positives = 23/63 (36%), Gaps = 3/63 (4%)
Query: 97 TGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDI 156
G++ +GL +L A +I+ ++ + AD + L +
Sbjct: 28 QGSATVGLKSKTHAVLVALK---RAQSELAAHQKKILHVDNHIGISIAGLTADARLLCNF 84
Query: 157 VKQ 159
++Q
Sbjct: 85 MRQ 87
>d1irug_ d.153.1.4 (G:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 245
Score = 48.9 bits (116), Expect = 2e-07
Identities = 16/110 (14%), Positives = 39/110 (35%), Gaps = 4/110 (3%)
Query: 166 TGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDI 225
++ +G+ GV+ + + R+ +++ + AD + L DI
Sbjct: 32 NSSTAIGIRCKDGVVFGVEKL-VLSKLYEEGSNKRLFNVDRHVGMAVAGLLADARSLADI 90
Query: 226 VKQKILDDDLHNDGFVLKPKSLHSWLTRVL--YNRRSQFDPLWINAFVAG 273
+++ + N G+ + K L + + Y S P + +
Sbjct: 91 AREEASNFRS-NFGYNIPLKHLADRVAMYVHAYTLYSAVRPFGCSFMLGS 139
Score = 38.9 bits (90), Expect = 3e-04
Identities = 9/65 (13%), Positives = 25/65 (38%), Gaps = 1/65 (1%)
Query: 97 TGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDI 156
++ +G+ GV+ + + R+ +++ + AD + L DI
Sbjct: 32 NSSTAIGIRCKDGVVFGVEKL-VLSKLYEEGSNKRLFNVDRHVGMAVAGLLADARSLADI 90
Query: 157 VKQKI 161
+++
Sbjct: 91 AREEA 95
Score = 35.8 bits (82), Expect = 0.004
Identities = 8/53 (15%), Positives = 18/53 (33%), Gaps = 2/53 (3%)
Query: 1 FLGTVDKLGTAYEDKILSFGFGTHIAVPLLRQETEKNPQMSKEEAIALIKTCM 53
L +D G +Y + G A E + +M+ + + + +
Sbjct: 147 QLYMIDPSGVSYGYWGCAIGKARQAAKTE--IEKLQMKEMTCRDIVKEVAKII 197
>d2z3ba1 d.153.1.4 (A:1-180) HslV (ClpQ) protease {Bacillus subtilis
[TaxId: 1423]}
Length = 180
Score = 46.7 bits (110), Expect = 5e-07
Identities = 16/113 (14%), Positives = 36/113 (31%), Gaps = 5/113 (4%)
Query: 167 GTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDY--ADFQYLND 224
T++ + G ++ D +G + R ++ + AG AD L +
Sbjct: 5 ATTIFAVQHKGRSAMSGDGQVTFGQAVVMKHTARKVRKLFNGKVLAGFAGSVADAFTLFE 64
Query: 225 IVKQKILDDDLHNDGFVLKPKSLHSWLTRVLYNRRSQFDPLWINAFVAGMQNG 277
+ K + +N L R+ + + +N + +G
Sbjct: 65 KFEAK---LEEYNGNLKRAAVELAKEWRSDKVLRKLEAMLIVMNQDTLLLVSG 114
Score = 44.4 bits (104), Expect = 3e-06
Identities = 16/131 (12%), Positives = 36/131 (27%), Gaps = 11/131 (8%)
Query: 98 GTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDY--ADFQYLND 155
T++ + G ++ D +G + R ++ + AG AD L +
Sbjct: 5 ATTIFAVQHKGRSAMSGDGQVTFGQAVVMKHTARKVRKLFNGKVLAGFAGSVADAFTLFE 64
Query: 156 IVKQKITPLTTGTSVLGLVFNGGVILA---------ADSAGYYGSMMRFNDCPRIMQINK 206
+ K+ + ++ I +
Sbjct: 65 KFEAKLEEYNGNLKRAAVELAKEWRSDKVLRKLEAMLIVMNQDTLLLVSGTGEVIEPDDG 124
Query: 207 FTILGAGNDYA 217
+G+G +YA
Sbjct: 125 ILAIGSGGNYA 135
>d1irud_ d.153.1.4 (D:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 243
Score = 45.0 bits (106), Expect = 3e-06
Identities = 12/110 (10%), Positives = 37/110 (33%), Gaps = 4/110 (3%)
Query: 166 TGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDI 225
G++ +G+ V+L + + +I ++ + AD + + +
Sbjct: 27 KGSTAVGVRGRDIVVLGVEKK-SVAKLQDERTVRKICALDDNVCMAFAGLTADARIVINR 85
Query: 226 VKQKILDDDLHNDGFVLKPKSLHSWLTRVL--YNRRSQFDPLWINAFVAG 273
+ + + + ++ + Y + + P I+A + G
Sbjct: 86 -ARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSNGRRPFGISALIVG 134
Score = 37.3 bits (86), Expect = 0.001
Identities = 7/63 (11%), Positives = 22/63 (34%), Gaps = 1/63 (1%)
Query: 97 TGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDI 156
G++ +G+ V+L + + +I ++ + AD + + +
Sbjct: 27 KGSTAVGVRGRDIVVLGVEKK-SVAKLQDERTVRKICALDDNVCMAFAGLTADARIVINR 85
Query: 157 VKQ 159
+
Sbjct: 86 ARV 88
>d1rypf_ d.153.1.4 (F:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 233
Score = 41.6 bits (97), Expect = 4e-05
Identities = 15/115 (13%), Positives = 39/115 (33%), Gaps = 4/115 (3%)
Query: 166 TGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDI 225
G+ +GL N +L A + + +I++ ++ L D + L++
Sbjct: 30 QGSVTVGLRSNTHAVLVALK---RNADELSSYQKKIIKCDEHMGLSLAGLAPDARVLSNY 86
Query: 226 VKQKILDDDLHNDGFVLKPKSLHSWLTRV-LYNRRSQFDPLWINAFVAGMQNGEP 279
++Q+ L + + ++ H + + P + + G
Sbjct: 87 LRQQCNYSSLVFNRKLAVERAGHLLCDKAQKNTQSYGGRPYGVGLLIIGYDKSGA 141
Score = 33.9 bits (77), Expect = 0.013
Identities = 11/64 (17%), Positives = 27/64 (42%), Gaps = 3/64 (4%)
Query: 97 TGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDI 156
G+ +GL N +L A + + +I++ ++ L D + L++
Sbjct: 30 QGSVTVGLRSNTHAVLVALK---RNADELSSYQKKIIKCDEHMGLSLAGLAPDARVLSNY 86
Query: 157 VKQK 160
++Q+
Sbjct: 87 LRQQ 90
>d1irua_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 244
Score = 41.5 bits (97), Expect = 5e-05
Identities = 10/110 (9%), Positives = 33/110 (30%), Gaps = 4/110 (3%)
Query: 166 TGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDI 225
G + + + ++ ++ + + +I + AD +
Sbjct: 34 GGLTSVAVRGKDCAVIVTQKK-VPDKLLDSSTVTHLFKITENIGCVMTGMTADSRSQVQR 92
Query: 226 VKQKILDDDLHNDGFVLKPKSLHSWLTRVL--YNRRSQFDPLWINAFVAG 273
+ + + G+ + L + + Y + ++ PL + G
Sbjct: 93 A-RYEAANWKYKYGYEIPVDMLCKRIADISQVYTQNAEMRPLGCCMILIG 141
Score = 39.6 bits (92), Expect = 2e-04
Identities = 10/64 (15%), Positives = 22/64 (34%)
Query: 1 FLGTVDKLGTAYEDKILSFGFGTHIAVPLLRQETEKNPQMSKEEAIALIKTCMDLLYVRD 60
+ D G K + G + L ++ +K + E+ + TC+ + D
Sbjct: 149 QVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKVKKKFDWTFEQTVETAITCLSTVLSID 208
Query: 61 ARSG 64
+
Sbjct: 209 FKPS 212
Score = 34.2 bits (78), Expect = 0.012
Identities = 4/63 (6%), Positives = 17/63 (26%), Gaps = 1/63 (1%)
Query: 97 TGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDI 156
G + + + ++ ++ + + +I + AD +
Sbjct: 34 GGLTSVAVRGKDCAVIVTQKK-VPDKLLDSSTVTHLFKITENIGCVMTGMTADSRSQVQR 92
Query: 157 VKQ 159
+
Sbjct: 93 ARY 95
>d1rypa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 243
Score = 35.5 bits (81), Expect = 0.004
Identities = 10/120 (8%), Positives = 28/120 (23%), Gaps = 9/120 (7%)
Query: 97 TGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDI 156
T + L + ++ + ++ I I++ + D +
Sbjct: 29 TNINSLAVRGKDCTVVISQKK-VPDKLLDPTTVSYIFCISRTIGMVVNGPIPDARNAALR 87
Query: 157 VKQKITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDY 216
K + G + A ++ + M+ + D
Sbjct: 88 AKAEAAEF--------RYKYGYDMPCDVLAKRMANLSQIYTQRAYMRPLGVILTFVSVDE 139
>d1cq3a_ b.27.1.1 (A:) Soluble secreted chemokine inhibitor, VCCI
{Cowpox virus [TaxId: 10243]}
Length = 224
Score = 28.8 bits (64), Expect = 0.61
Identities = 13/59 (22%), Positives = 26/59 (44%), Gaps = 9/59 (15%)
Query: 34 TEKNPQMSKEEAIALIKTCMDLLYVR----DARSGAKNGPSLGKYHDFPNVLPHYFRRS 88
+ +P +++EEA+++IK C + ++ + S K P LG N+
Sbjct: 106 GKDSPAITREEALSMIKDCEMSINIKCSEEEKDSNIKTHPVLG-----SNISHKKVSYE 159
>d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB)
{Streptomyces venezuelae [TaxId: 54571]}
Length = 322
Score = 27.1 bits (59), Expect = 2.4
Identities = 6/73 (8%), Positives = 20/73 (27%), Gaps = 7/73 (9%)
Query: 189 YGSMMRFND-----CPRIMQINKFTILGAGNDYADFQYLNDIVK--QKILDDDLHNDGFV 241
YG ++ + G G + ++ + +D + +L + +
Sbjct: 182 YGPYQHPEKLIPLFVTNLLDGGTLPLYGDGANVREWVHTDDHCRGIALVLAGGRAGEIYH 241
Query: 242 LKPKSLHSWLTRV 254
+ +
Sbjct: 242 IGGGLELTNRELT 254
Score = 25.2 bits (54), Expect = 9.9
Identities = 5/44 (11%), Positives = 14/44 (31%), Gaps = 5/44 (11%)
Query: 120 YGSMMRFND-----CPRIMQINKFTILGAGNDYADFQYLNDIVK 158
YG ++ + G G + ++ + +D +
Sbjct: 182 YGPYQHPEKLIPLFVTNLLDGGTLPLYGDGANVREWVHTDDHCR 225
>d1uewa_ b.36.1.1 (A:) Membrane associated guanylate kinase
inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 114
Score = 26.2 bits (57), Expect = 2.5
Identities = 9/36 (25%), Positives = 15/36 (41%), Gaps = 3/36 (8%)
Query: 40 MSKEEAIALIKTC---MDLLYVRDARSGAKNGPSLG 72
M + + LIK + L + + +GPS G
Sbjct: 79 MPHADIVKLIKDAGLSVTLRIIPQEELNSPSGPSSG 114
>d2b97a1 b.138.1.1 (A:1-70) Hydrophobin II, HfbII {Trichoderma
reesei [TaxId: 51453]}
Length = 70
Score = 25.1 bits (55), Expect = 2.7
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 88 SGSFSTPLTTGTSVLGLV 105
+G FS PL T+VL L+
Sbjct: 5 TGLFSNPLCCATNVLDLI 22
>d1rj6a_ b.74.1.1 (A:) Carbonic anhydrase {Mouse (Mus musculus),
isozyme XIV [TaxId: 10090]}
Length = 259
Score = 26.7 bits (58), Expect = 2.8
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 77 FPNVLPHYFRRSGSFSTPLTTGTSVLGLVFN 107
FP L +FR +GS +TP + VL VFN
Sbjct: 183 FPQQLEQFFRYNGSLTTPPCYQS-VLWTVFN 212
>d1xlya_ a.232.1.1 (A:) RNA-binding protein She2p {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 232
Score = 26.0 bits (57), Expect = 4.2
Identities = 9/42 (21%), Positives = 19/42 (45%)
Query: 124 MRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKITPLT 165
+R +++ +F I A D + ++I Q+I P+
Sbjct: 157 LRIGSNLLDLEVVQFAIKSADEDGTNIGETDNIFLQEILPVN 198
>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga
maritima [TaxId: 2336]}
Length = 171
Score = 25.9 bits (56), Expect = 4.3
Identities = 8/29 (27%), Positives = 14/29 (48%)
Query: 206 KFTILGAGNDYADFQYLNDIVKQKILDDD 234
K I+GAG+ + ++D+ K L
Sbjct: 4 KIGIIGAGSAVFSLRLVSDLCKTPGLSGS 32
>d1eh1a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Thermus
thermophilus [TaxId: 274]}
Length = 185
Score = 26.1 bits (57), Expect = 4.7
Identities = 9/41 (21%), Positives = 14/41 (34%), Gaps = 3/41 (7%)
Query: 119 YYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQ 159
YYG+ + N + + T+ D L I K
Sbjct: 45 YYGAHVPLNQIATVTAPDPRTL---VVQSWDQNALKAIEKA 82
Score = 26.1 bits (57), Expect = 4.7
Identities = 9/41 (21%), Positives = 14/41 (34%), Gaps = 3/41 (7%)
Query: 188 YYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQ 228
YYG+ + N + + T+ D L I K
Sbjct: 45 YYGAHVPLNQIATVTAPDPRTL---VVQSWDQNALKAIEKA 82
>d1sgla_ d.124.1.1 (A:) Trichomaglin {Gourd (Trichosanthes
lepiniana) [TaxId: 282652]}
Length = 206
Score = 25.9 bits (56), Expect = 5.2
Identities = 15/84 (17%), Positives = 29/84 (34%), Gaps = 7/84 (8%)
Query: 190 GSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDLHNDGFVLKPKSLHS 249
G+ +N C + +FTI G +Y+ + + D++ K +
Sbjct: 20 GACCPYNGCCKADSPTQFTIHGLRPEYSGGERPSCCTGGSFDPDEIMP----FFGKLVEY 75
Query: 250 WLTRVLYNRRSQFDP---LWINAF 270
W T +S + LW +
Sbjct: 76 WPTYRCALEQSCNNRKEILWGQQY 99
>d1d6za3 d.17.2.1 (A:186-300) Copper amine oxidase, domains 1 and 2
{Escherichia coli [TaxId: 562]}
Length = 115
Score = 25.1 bits (55), Expect = 6.1
Identities = 17/95 (17%), Positives = 37/95 (38%), Gaps = 12/95 (12%)
Query: 171 LGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYA----DFQYLNDIV 226
G+ VI + GY+ R++++ + +G GN +A + + D+
Sbjct: 27 RGITDAKKVITTPLTVGYFDGKDGLKQDARLLKVISYLDVGDGNYWAHPIENLVAVVDLE 86
Query: 227 KQKILDDDLHNDGFVLKPKSLHSWLTRVLYNRRSQ 261
++KI+ + V P T ++ R +
Sbjct: 87 QKKIV--KIEEGPVVPVPM------TARPFDGRDR 113
>d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB)
{Streptococcus suis, serotype 2 [TaxId: 1307]}
Length = 361
Score = 25.9 bits (56), Expect = 6.6
Identities = 11/48 (22%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
Query: 131 RIMQINKFTILGAGNDYADFQYLNDIVKQKITPLTTGTSVLGLVFNGG 178
++ I G G+ D+ Y+ D + +T G + G +N G
Sbjct: 214 NALEGKPLPIYGKGDQIRDWLYVEDHARALHMVVTEGKA--GETYNIG 259
Score = 25.5 bits (55), Expect = 8.7
Identities = 7/54 (12%), Positives = 20/54 (37%), Gaps = 2/54 (3%)
Query: 200 RIMQINKFTILGAGNDYADFQYLNDIVK--QKILDDDLHNDGFVLKPKSLHSWL 251
++ I G G+ D+ Y+ D + ++ + + + + + L
Sbjct: 214 NALEGKPLPIYGKGDQIRDWLYVEDHARALHMVVTEGKAGETYNIGGHNEKKNL 267
>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase
{Trypanosome (Leishmania mexicana) [TaxId: 5665]}
Length = 189
Score = 25.2 bits (54), Expect = 7.1
Identities = 4/15 (26%), Positives = 9/15 (60%)
Query: 131 RIMQINKFTILGAGN 145
++ +NK + G+G
Sbjct: 3 ELLYLNKAVVFGSGA 17
Score = 25.2 bits (54), Expect = 7.1
Identities = 4/15 (26%), Positives = 9/15 (60%)
Query: 200 RIMQINKFTILGAGN 214
++ +NK + G+G
Sbjct: 3 ELLYLNKAVVFGSGA 17
>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 312
Score = 25.8 bits (56), Expect = 7.2
Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 7/46 (15%)
Query: 120 YGSMMRFND-------CPRIMQINKFTILGAGNDYADFQYLNDIVK 158
+G M ND + +Q T+ G+G+ FQY++D+V
Sbjct: 175 FGPRMHMNDGRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVN 220
Score = 25.8 bits (56), Expect = 7.2
Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 7/46 (15%)
Query: 189 YGSMMRFND-------CPRIMQINKFTILGAGNDYADFQYLNDIVK 227
+G M ND + +Q T+ G+G+ FQY++D+V
Sbjct: 175 FGPRMHMNDGRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVN 220
>d1ujda_ b.36.1.1 (A:) Hypothetical protein KIAA0559 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 117
Score = 24.5 bits (53), Expect = 8.1
Identities = 7/33 (21%), Positives = 12/33 (36%)
Query: 40 MSKEEAIALIKTCMDLLYVRDARSGAKNGPSLG 72
+ EE ++I + +GPS G
Sbjct: 85 KTYEEVQSIISQQSGEAEICVRLDLNMSGPSSG 117
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.140 0.424
Gapped
Lambda K H
0.267 0.0493 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,076,169
Number of extensions: 50698
Number of successful extensions: 306
Number of sequences better than 10.0: 1
Number of HSP's gapped: 299
Number of HSP's successfully gapped: 123
Length of query: 279
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 195
Effective length of database: 1,254,276
Effective search space: 244583820
Effective search space used: 244583820
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.4 bits)