RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy949
         (569 letters)



>d2fdia1 b.82.2.10 (A:15-214) Alkylated DNA repair protein AlkB
           {Escherichia coli [TaxId: 562]}
          Length = 200

 Score = 50.5 bits (120), Expect = 8e-08
 Identities = 19/156 (12%), Positives = 40/156 (25%), Gaps = 19/156 (12%)

Query: 21  HWDDAIHGFRETER--------SKWNEENTKIIARVQNLAFPPNVTPIQYVHVLDLEQKG 72
            W     G+  +              +    +  R    A  P+  P     +       
Sbjct: 54  GWTTHRQGYLYSPIDPQTNKPWPAMPQSFHNLCQRAATAAGYPDFQP-DACLINRYAPGA 112

Query: 73  YIKAHKGYIKAHVDSVRFCGNTIAGLSLLSDSVMKLVDEKTKTQEILVLLKQRSLYVMKD 132
            +  H                 I  +SL   ++ +    K       +LL+   + V   
Sbjct: 113 KLSLH------QDKDEPDLRAPIVSVSLGLPAIFQFGGLKRNDPLKRLLLEHGDVVVWGG 166

Query: 133 DARYKFTHEVLENERSYFGDLFVPRGRRISVICRNT 168
           ++R  + H +        G   +    R ++  R  
Sbjct: 167 ESRLFY-HGIQ---PLKAGFHPLTIDCRYNLTFRQA 198


>d2iuwa1 b.82.2.10 (A:70-279) AlkB homolog 3 {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 210

 Score = 41.0 bits (95), Expect = 1e-04
 Identities = 15/98 (15%), Positives = 31/98 (31%), Gaps = 18/98 (18%)

Query: 80  YIKAHVD--SVRFCGNTIAGLSLLSDSVM--------KLVDEKTKTQEILVLLKQRSLYV 129
            +  H D          IA LS  +            +   + T  + + + L   +L +
Sbjct: 118 SVDWHSDDEPSLGRCPIIASLSFGATRTFEMRKKPPPEENGDYTYVERVKIPLDHGTLLI 177

Query: 130 MKDDARYKFTHEVLENERSYFGDLFVPRGRRISVICRN 167
           M+   +  + H V +            R  R+++  R 
Sbjct: 178 MEGATQADWQHRVPKEYH--------SREPRVNLTFRT 207


>d1epua_ e.25.1.1 (A:) Neuronal Sec1, NSec1 {Longfin inshore squid
           (Loligo pealei) [TaxId: 6621]}
          Length = 590

 Score = 28.9 bits (64), Expect = 1.9
 Identities = 15/75 (20%), Positives = 21/75 (28%), Gaps = 9/75 (12%)

Query: 140 HEVLENERSYFGDLFVPRGRRISVICRNTPDPSLIDS-SSDTSTNNNPYASMFYIFFQPR 198
            E +   R     L          +   TP    +    +D    +NP     +IFF   
Sbjct: 54  VEDINRRREPLPLL--------EAVYLITPTEESVKCLMADFQNPDNPQYRGAHIFFTEA 105

Query: 199 LPEPDLIRLDSSDDV 213
            PE     L  S   
Sbjct: 106 CPEELFKELCKSTTA 120


>d1mqsa_ e.25.1.1 (A:) Sly1P protein {Baker's yeast (Saccharomyces
           cerevisiae) [TaxId: 4932]}
          Length = 653

 Score = 28.1 bits (62), Expect = 3.5
 Identities = 22/97 (22%), Positives = 36/97 (37%), Gaps = 13/97 (13%)

Query: 140 HEVLENERSYFGDLFVPRGRRISVICRNTPDPSLIDS-SSDTSTNNNPYASMFYIFFQPR 198
           H +++ +RS   D+          I   +P    ID   +D    ++ Y+  FYI F   
Sbjct: 74  HSLIKQDRSPLPDV--------PAIYFVSPTKENIDIIVNDLK--SDKYSE-FYINFTSS 122

Query: 199 LPEPDLIRLDSSDDVLPTSSQCAGVENPLYPYFVPKN 235
           LP   L  L     +   S +   V +  Y  F+   
Sbjct: 123 LPRNLLEDLAQQVSITGKSDKIKQVYD-QYLDFIVTE 158


>d1dn1a_ e.25.1.1 (A:) Neuronal Sec1, NSec1 {Rat (Rattus norvegicus)
           [TaxId: 10116]}
          Length = 589

 Score = 26.9 bits (59), Expect = 7.5
 Identities = 13/75 (17%), Positives = 19/75 (25%), Gaps = 9/75 (12%)

Query: 140 HEVLENERSYFGDLFVPRGRRISVICRNTPDPSLIDS-SSDTSTNNNPYASMFYIFFQPR 198
            E +   R     L          +   TP    + S  SD            ++FF   
Sbjct: 55  VEDINKRREPLPSL--------EAVYLITPSEKSVHSLISDFKDPPTAKYRAAHVFFTDS 106

Query: 199 LPEPDLIRLDSSDDV 213
            P+     L  S   
Sbjct: 107 CPDALFNELVKSRAA 121


>d2i09a1 c.76.1.5 (A:2-107,A:227-403) Phosphopentomutase DeoB
           {Streptococcus mutans [TaxId: 1309]}
          Length = 283

 Score = 26.5 bits (57), Expect = 8.1
 Identities = 18/200 (9%), Positives = 45/200 (22%), Gaps = 13/200 (6%)

Query: 27  HGFRETERSKWNEENTKIIARVQNLAFPPNVTPIQYVHVLDLEQKGYIKAHKGYIKAHVD 86
              ++T    W      I           N      V    + +   I    G       
Sbjct: 86  SLGKDTMTGHWEIMGLNITEPSPFAPTVLNKLADAGVSTYAVGKINDIFNGSGITNDMGH 145

Query: 87  SVRFCGNTIAGLSLLSDSVMKLVDEKTKTQEILVLLKQRSLYVMKDDARYKFTHEVLENE 146
           +               D+++K +     T+            +           + L   
Sbjct: 146 NKSNSHGV--------DTLIKTMGLSAFTKGFSFTNLVDFDALYGHRRNAHGYRDCLHEF 197

Query: 147 RSYFGDLFVPRGRRISVICRNTPDPSLIDSSSDTSTNNNPYASMFYIFFQPRLPEPDLIR 206
                ++         ++           + +D +    P      + + P      ++ 
Sbjct: 198 DERLPEIIAAMKVDDLLLITADHGNDPTYAGTDHTREYVPL-----LAYSPSFTGNGVLP 252

Query: 207 LDSSDDVLPTSSQCAGVENP 226
           +    D+  T +   GV+  
Sbjct: 253 VGHYADISATIADNFGVDTA 272


>d1e9yb2 c.1.9.2 (B:132-431,B:481-569) alpha-subunit of urease,
           catalytic domain {Helicobacter pylori [TaxId: 210]}
          Length = 389

 Score = 26.6 bits (59), Expect = 8.2
 Identities = 10/31 (32%), Positives = 17/31 (54%), Gaps = 6/31 (19%)

Query: 202 PDLIRLDSSDDVLPTSSQCAGVENPLYPYFV 232
           PD+I++    ++LP S+      NP  P+ V
Sbjct: 153 PDIIKVAGEHNILPAST------NPTIPFTV 177


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.314    0.129    0.383 

Gapped
Lambda     K      H
   0.267   0.0462    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,010,437
Number of extensions: 90958
Number of successful extensions: 177
Number of sequences better than 10.0: 1
Number of HSP's gapped: 177
Number of HSP's successfully gapped: 11
Length of query: 569
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 479
Effective length of database: 1,171,896
Effective search space: 561338184
Effective search space used: 561338184
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.6 bits)