BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9492
(584 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 246 bits (628), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 113/193 (58%), Positives = 149/193 (77%)
Query: 22 KCVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQ 81
+ VEAG DV +PD E VTLLHWAAINNRI+++KY+IS+GAIVD +GGDL +TPLHWATRQ
Sbjct: 27 ELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQ 86
Query: 82 GHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTAL 141
GHL VV L+++GADP+L+D EG +CIH AAQFGHT IVAYL+AKG +V++ D+NGMT L
Sbjct: 87 GHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPL 146
Query: 142 MWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIP 201
MW+AY+ S+DPTRLL+TF S + DK H N ALHWA+ A N I+ L+ ++++
Sbjct: 147 MWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQ 206
Query: 202 NAQGLTPFMLLEE 214
N +G + L ++
Sbjct: 207 NIKGESALDLAKQ 219
Score = 35.8 bits (81), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 50/106 (47%), Gaps = 1/106 (0%)
Query: 19 FVGKCVEAGQDVNEPDSETVTLLHWAAI-NNRIEIMKYFISQGAIVDAIGGDLQATPLHW 77
V + GQDV+ D +T L WAA + ++ + ++ V+ + T LHW
Sbjct: 124 IVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHW 183
Query: 78 ATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYL 123
A G+ + LL++ GA+ + +G + + A Q + ++ +L
Sbjct: 184 AVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHL 229
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 59/134 (44%), Gaps = 3/134 (2%)
Query: 78 ATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVN-LQDRN 136
AT+ G + L++ G D D E T +H AA +V Y ++KG V+ L
Sbjct: 16 ATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDL 75
Query: 137 GMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTS 196
T L W A + L L+ +GA ++ D G +H A + + L++
Sbjct: 76 NSTPLHW-ATRQGHLSMVVQLMKYGADPSLIDG-EGCSCIHLAAQFGHTSIVAYLIAKGQ 133
Query: 197 SLEIPNAQGLTPFM 210
+++ + G+TP M
Sbjct: 134 DVDMMDQNGMTPLM 147
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 51/111 (45%), Gaps = 7/111 (6%)
Query: 98 TLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLL 157
T +D + I +A Q+G LV G +V D+ +T L W+A +D +
Sbjct: 3 THIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAIN-NRIDLVKYY 61
Query: 158 ITFGASTTIQDKIHGNV---ALHWAIYAKNHVAITTLVSHTSSLEIPNAQG 205
I+ GA I D++ G++ LHWA + + L+ + + + + +G
Sbjct: 62 ISKGA---IVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEG 109
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 102 bits (254), Expect = 6e-22, Method: Composition-based stats.
Identities = 57/122 (46%), Positives = 75/122 (61%), Gaps = 1/122 (0%)
Query: 20 VGKCVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWAT 79
V +E G DVN DS+ T LH+AA EI+K IS+GA V+A D + TPLH+A
Sbjct: 20 VKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGR-TPLHYAA 78
Query: 80 RQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMT 139
++GH + V LLI GAD DS+G T +H AA+ GH IV L++KG +VN D +G T
Sbjct: 79 KEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNTSDSDGRT 138
Query: 140 AL 141
L
Sbjct: 139 PL 140
Score = 84.3 bits (207), Expect = 1e-16, Method: Composition-based stats.
Identities = 52/125 (41%), Positives = 73/125 (58%), Gaps = 2/125 (1%)
Query: 44 AAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSE 103
AA N + +K I GA V+A D + TPLH+A ++GH + V LLI GAD DS+
Sbjct: 11 AAENGNKDRVKDLIENGADVNASDSDGR-TPLHYAAKEGHKEIVKLLISKGADVNAKDSD 69
Query: 104 GSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGAS 163
G T +H AA+ GH IV L++KG +VN +D +G T L ++A K + +LLI+ GA
Sbjct: 70 GRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAA-KEGHKEIVKLLISKGAD 128
Query: 164 TTIQD 168
D
Sbjct: 129 VNTSD 133
Score = 78.6 bits (192), Expect = 9e-15, Method: Composition-based stats.
Identities = 48/114 (42%), Positives = 66/114 (57%), Gaps = 5/114 (4%)
Query: 14 ELTKVFVGKCVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQAT 73
E+ K+ + K G DVN DS+ T LH+AA EI+K IS+GA V+A D + T
Sbjct: 51 EIVKLLISK----GADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGR-T 105
Query: 74 PLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKG 127
PLH+A ++GH + V LLI GAD DS+G T + A + G+ IV L +G
Sbjct: 106 PLHYAAKEGHKEIVKLLISKGADVNTSDSDGRTPLDLAREHGNEEIVKLLEKQG 159
Score = 76.6 bits (187), Expect = 3e-14, Method: Composition-based stats.
Identities = 48/138 (34%), Positives = 74/138 (53%), Gaps = 2/138 (1%)
Query: 78 ATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNG 137
A G+ D V LI++GAD DS+G T +H AA+ GH IV L++KG +VN +D +G
Sbjct: 11 AAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDG 70
Query: 138 MTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSS 197
T L ++A K + +LLI+ GA +D G LH+A + + L+S +
Sbjct: 71 RTPLHYAA-KEGHKEIVKLLISKGADVNAKDS-DGRTPLHYAAKEGHKEIVKLLISKGAD 128
Query: 198 LEIPNAQGLTPFMLLEEN 215
+ ++ G TP L E+
Sbjct: 129 VNTSDSDGRTPLDLAREH 146
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 99.4 bits (246), Expect = 5e-21, Method: Composition-based stats.
Identities = 56/122 (45%), Positives = 72/122 (59%), Gaps = 1/122 (0%)
Query: 20 VGKCVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWAT 79
V +E G DVN DS+ T LH AA N E++K IS+GA V+A D + TPLH A
Sbjct: 20 VKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGR-TPLHHAA 78
Query: 80 RQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMT 139
GH + V LLI GAD DS+G T +H AA+ GH +V L++KG +VN D +G T
Sbjct: 79 ENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRT 138
Query: 140 AL 141
L
Sbjct: 139 PL 140
Score = 79.0 bits (193), Expect = 7e-15, Method: Composition-based stats.
Identities = 50/125 (40%), Positives = 68/125 (54%), Gaps = 2/125 (1%)
Query: 44 AAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSE 103
AA N + +K I GA V+A D + TPLH A GH + V LLI GAD DS+
Sbjct: 11 AAENGNKDRVKDLIENGADVNASDSDGR-TPLHHAAENGHKEVVKLLISKGADVNAKDSD 69
Query: 104 GSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGAS 163
G T +H AA+ GH +V L++KG +VN +D +G T L +A + +LLI+ GA
Sbjct: 70 GRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHK-EVVKLLISKGAD 128
Query: 164 TTIQD 168
D
Sbjct: 129 VNTSD 133
Score = 74.3 bits (181), Expect = 2e-13, Method: Composition-based stats.
Identities = 47/114 (41%), Positives = 63/114 (55%), Gaps = 5/114 (4%)
Query: 14 ELTKVFVGKCVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQAT 73
E+ K+ + K G DVN DS+ T LH AA N E++K IS+GA V+A D + T
Sbjct: 51 EVVKLLISK----GADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGR-T 105
Query: 74 PLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKG 127
PLH A GH + V LLI GAD DS+G T + A + G+ +V L +G
Sbjct: 106 PLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQG 159
Score = 72.8 bits (177), Expect = 5e-13, Method: Composition-based stats.
Identities = 46/138 (33%), Positives = 71/138 (51%), Gaps = 2/138 (1%)
Query: 78 ATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNG 137
A G+ D V LI++GAD DS+G T +H AA+ GH +V L++KG +VN +D +G
Sbjct: 11 AAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDG 70
Query: 138 MTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSS 197
T L +A + +LLI+ GA +D G LH A + + L+S +
Sbjct: 71 RTPLHHAAENGHK-EVVKLLISKGADVNAKDS-DGRTPLHHAAENGHKEVVKLLISKGAD 128
Query: 198 LEIPNAQGLTPFMLLEEN 215
+ ++ G TP L E+
Sbjct: 129 VNTSDSDGRTPLDLAREH 146
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 96.3 bits (238), Expect = 5e-20, Method: Composition-based stats.
Identities = 54/122 (44%), Positives = 72/122 (59%), Gaps = 1/122 (0%)
Query: 20 VGKCVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWAT 79
V +E G D N DS+ T LH+AA N EI+K +S+GA +A D + TPLH+A
Sbjct: 20 VKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGR-TPLHYAA 78
Query: 80 RQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMT 139
GH + V LL+ GADP DS+G T +H AA+ GH IV L++KG + N D +G T
Sbjct: 79 ENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNTSDSDGRT 138
Query: 140 AL 141
L
Sbjct: 139 PL 140
Score = 76.6 bits (187), Expect = 3e-14, Method: Composition-based stats.
Identities = 47/125 (37%), Positives = 69/125 (55%), Gaps = 2/125 (1%)
Query: 44 AAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSE 103
AA N + +K + GA +A D + TPLH+A GH + V LL+ GADP DS+
Sbjct: 11 AAENGNKDRVKDLLENGADPNASDSDGR-TPLHYAAENGHKEIVKLLLSKGADPNAKDSD 69
Query: 104 GSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGAS 163
G T +H AA+ GH IV L++KG + N +D +G T L ++A + +LL++ GA
Sbjct: 70 GRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHK-EIVKLLLSKGAD 128
Query: 164 TTIQD 168
D
Sbjct: 129 PNTSD 133
Score = 75.1 bits (183), Expect = 9e-14, Method: Composition-based stats.
Identities = 46/114 (40%), Positives = 64/114 (56%), Gaps = 5/114 (4%)
Query: 14 ELTKVFVGKCVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQAT 73
E+ K+ + K G D N DS+ T LH+AA N EI+K +S+GA +A D + T
Sbjct: 51 EIVKLLLSK----GADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGR-T 105
Query: 74 PLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKG 127
PLH+A GH + V LL+ GADP DS+G T + A + G+ IV L +G
Sbjct: 106 PLHYAAENGHKEIVKLLLSKGADPNTSDSDGRTPLDLAREHGNEEIVKLLEKQG 159
Score = 71.6 bits (174), Expect = 1e-12, Method: Composition-based stats.
Identities = 45/138 (32%), Positives = 72/138 (52%), Gaps = 2/138 (1%)
Query: 78 ATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNG 137
A G+ D V L+++GADP DS+G T +H AA+ GH IV L++KG + N +D +G
Sbjct: 11 AAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDG 70
Query: 138 MTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSS 197
T L ++A + +LL++ GA +D G LH+A + + L+S +
Sbjct: 71 RTPLHYAAENGHK-EIVKLLLSKGADPNAKDS-DGRTPLHYAAENGHKEIVKLLLSKGAD 128
Query: 198 LEIPNAQGLTPFMLLEEN 215
++ G TP L E+
Sbjct: 129 PNTSDSDGRTPLDLAREH 146
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 95.5 bits (236), Expect = 7e-20, Method: Composition-based stats.
Identities = 53/122 (43%), Positives = 71/122 (58%), Gaps = 1/122 (0%)
Query: 20 VGKCVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWAT 79
V +E G DVN DS+ T LH AA N E++K +SQGA +A D + TPLH A
Sbjct: 20 VKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGK-TPLHLAA 78
Query: 80 RQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMT 139
GH + V LL+ GADP DS+G T +H AA+ GH +V L+++G + N D +G T
Sbjct: 79 ENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNTSDSDGRT 138
Query: 140 AL 141
L
Sbjct: 139 PL 140
Score = 75.1 bits (183), Expect = 1e-13, Method: Composition-based stats.
Identities = 46/125 (36%), Positives = 68/125 (54%), Gaps = 2/125 (1%)
Query: 44 AAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSE 103
AA N + +K + GA V+A D + TPLH A GH + V LL+ GADP DS+
Sbjct: 11 AAENGNKDRVKDLLENGADVNASDSDGK-TPLHLAAENGHKEVVKLLLSQGADPNAKDSD 69
Query: 104 GSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGAS 163
G T +H AA+ GH +V L+++G + N +D +G T L +A + +LL++ GA
Sbjct: 70 GKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHK-EVVKLLLSQGAD 128
Query: 164 TTIQD 168
D
Sbjct: 129 PNTSD 133
Score = 72.0 bits (175), Expect = 8e-13, Method: Composition-based stats.
Identities = 42/101 (41%), Positives = 56/101 (55%), Gaps = 1/101 (0%)
Query: 27 GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDS 86
G D N DS+ T LH AA N E++K +SQGA +A D + TPLH A GH +
Sbjct: 60 GADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGK-TPLHLAAENGHKEV 118
Query: 87 VVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKG 127
V LL+ GADP DS+G T + A + G+ +V L +G
Sbjct: 119 VKLLLSQGADPNTSDSDGRTPLDLAREHGNEEVVKLLEKQG 159
Score = 47.0 bits (110), Expect = 3e-05, Method: Composition-based stats.
Identities = 35/138 (25%), Positives = 55/138 (39%), Gaps = 35/138 (25%)
Query: 78 ATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNG 137
A G+ D V L+++GAD DS+G T +H AA+ GH +V L+++G + N +D +G
Sbjct: 11 AAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDG 70
Query: 138 MTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSS 197
T LH A + + L+S +
Sbjct: 71 KTP-----------------------------------LHLAAENGHKEVVKLLLSQGAD 95
Query: 198 LEIPNAQGLTPFMLLEEN 215
++ G TP L EN
Sbjct: 96 PNAKDSDGKTPLHLAAEN 113
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 95.1 bits (235), Expect = 9e-20, Method: Composition-based stats.
Identities = 52/116 (44%), Positives = 71/116 (61%), Gaps = 3/116 (2%)
Query: 27 GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQA-TPLHWATRQGHLD 85
G DVN D++ T LH AA N +EI++ + GA V+A DL TPLH A GHL+
Sbjct: 37 GADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNA--SDLTGITPLHLAAATGHLE 94
Query: 86 SVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTAL 141
V +L++HGAD D++G T +H AA++GH IV L+ G +VN QD+ G TA
Sbjct: 95 IVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGADVNAQDKFGKTAF 150
Score = 71.2 bits (173), Expect = 1e-12, Method: Composition-based stats.
Identities = 45/117 (38%), Positives = 63/117 (53%), Gaps = 2/117 (1%)
Query: 53 MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 112
++ ++ GA V+A D TPLH A GHL+ V +L+++GAD D G T +H AA
Sbjct: 30 VRILMANGADVNATDND-GYTPLHLAASNGHLEIVEVLLKNGADVNASDLTGITPLHLAA 88
Query: 113 QFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDK 169
GH IV L+ G +VN D +G T L +A K L+ +L+ GA QDK
Sbjct: 89 ATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAA-KYGHLEIVEVLLKHGADVNAQDK 144
Score = 62.4 bits (150), Expect = 7e-10, Method: Composition-based stats.
Identities = 34/83 (40%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Query: 24 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 83
++ G DVN D +T LH AA +EI++ + GA V+A D TPLH A + GH
Sbjct: 67 LKNGADVNASDLTGITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGH-TPLHLAAKYGH 125
Query: 84 LDSVVLLIQHGADPTLMDSEGST 106
L+ V +L++HGAD D G T
Sbjct: 126 LEIVEVLLKHGADVNAQDKFGKT 148
Score = 60.8 bits (146), Expect = 2e-09, Method: Composition-based stats.
Identities = 46/143 (32%), Positives = 66/143 (46%), Gaps = 3/143 (2%)
Query: 67 GGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAK 126
G DL L A R G D V +L+ +GAD D++G T +H AA GH IV L+
Sbjct: 11 GSDLGKKLLE-AARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKN 69
Query: 127 GINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHV 186
G +VN D G+T L +A L+ +L+ GA D G+ LH A +
Sbjct: 70 GADVNASDLTGITPLHLAA-ATGHLEIVEVLLKHGADVNAYDN-DGHTPLHLAAKYGHLE 127
Query: 187 AITTLVSHTSSLEIPNAQGLTPF 209
+ L+ H + + + G T F
Sbjct: 128 IVEVLLKHGADVNAQDKFGKTAF 150
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 94.7 bits (234), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 60/170 (35%), Positives = 90/170 (52%), Gaps = 4/170 (2%)
Query: 41 LHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLM 100
LH AA ++I + GA +D D Q TPL A HL++V LI+ GA
Sbjct: 15 LHAAAEAGHVDICHMLVQAGANIDTCSED-QRTPLMEAAENNHLEAVKYLIKAGALVDPK 73
Query: 101 DSEGSTCIHQAAQFGHTRIVAYLVAKG-INVNLQDRNGMTALMWSAYKVFSLDPTRLLIT 159
D+EGSTC+H AA+ GH +V YL++ G ++VN QD G T ++W A + +D +LL++
Sbjct: 74 DAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIW-ATEYKHVDLVKLLLS 132
Query: 160 FGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPF 209
G+ I+D N+ LHWA ++ L++ L N G +P
Sbjct: 133 KGSDINIRDN-EENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPL 181
Score = 80.1 bits (196), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 93/187 (49%), Gaps = 4/187 (2%)
Query: 24 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 83
V+AG +++ + T L AA NN +E +KY I GA+VD + +T LH A ++GH
Sbjct: 31 VQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAE-GSTCLHLAAKKGH 89
Query: 84 LDSVVLLIQHGA-DPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALM 142
+ V L+ +G D D G T + A ++ H +V L++KG ++N++D L
Sbjct: 90 YEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLH 149
Query: 143 WSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPN 202
W+A+ +D +L+ + IHG+ LH A + + +S S + + N
Sbjct: 150 WAAFS-GCVDIAEILLAAKCDLHAVN-IHGDSPLHIAARENRYDCVVLFLSRDSDVTLKN 207
Query: 203 AQGLTPF 209
+G TP
Sbjct: 208 KEGETPL 214
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 90.1 bits (222), Expect = 3e-18, Method: Composition-based stats.
Identities = 50/115 (43%), Positives = 69/115 (60%), Gaps = 1/115 (0%)
Query: 27 GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDS 86
G DVN D+ +T LH AA +EI++ + GA V+AI + +TPLH A GHL+
Sbjct: 37 GADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAID-IMGSTPLHLAALIGHLEI 95
Query: 87 VVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTAL 141
V +L++HGAD +D+ G T +H AA GH IV L+ G +VN QD+ G TA
Sbjct: 96 VEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAF 150
Score = 69.7 bits (169), Expect = 4e-12, Method: Composition-based stats.
Identities = 46/114 (40%), Positives = 61/114 (53%), Gaps = 7/114 (6%)
Query: 62 IVDAIGGDLQAT------PLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFG 115
I+ A G D+ AT PLH A GHL+ V +L++HGAD +D GST +H AA G
Sbjct: 32 ILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIMGSTPLHLAALIG 91
Query: 116 HTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDK 169
H IV L+ G +VN D G T L +A + L+ +L+ GA QDK
Sbjct: 92 HLEIVEVLLKHGADVNAVDTWGDTPLHLAAI-MGHLEIVEVLLKHGADVNAQDK 144
Score = 59.7 bits (143), Expect = 5e-09, Method: Composition-based stats.
Identities = 46/143 (32%), Positives = 66/143 (46%), Gaps = 3/143 (2%)
Query: 67 GGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAK 126
G DL L A R G D V +L+ +GAD D+ G T +H AA +GH IV L+
Sbjct: 11 GSDLGKKLLE-AARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKH 69
Query: 127 GINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHV 186
G +VN D G T L +A + L+ +L+ GA D G+ LH A +
Sbjct: 70 GADVNAIDIMGSTPLHLAAL-IGHLEIVEVLLKHGADVNAVDT-WGDTPLHLAAIMGHLE 127
Query: 187 AITTLVSHTSSLEIPNAQGLTPF 209
+ L+ H + + + G T F
Sbjct: 128 IVEVLLKHGADVNAQDKFGKTAF 150
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 90.1 bits (222), Expect = 3e-18, Method: Composition-based stats.
Identities = 50/115 (43%), Positives = 69/115 (60%), Gaps = 1/115 (0%)
Query: 27 GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDS 86
G DVN D+ T LH AA + +EI++ + GA VDA TPLH A GHL+
Sbjct: 37 GADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDA-SDVFGYTPLHLAAYWGHLEI 95
Query: 87 VVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTAL 141
V +L+++GAD MDS+G T +H AA++G+ IV L+ G +VN QD+ G TA
Sbjct: 96 VEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGADVNAQDKFGKTAF 150
Score = 75.1 bits (183), Expect = 9e-14, Method: Composition-based stats.
Identities = 46/117 (39%), Positives = 65/117 (55%), Gaps = 2/117 (1%)
Query: 53 MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 112
++ ++ GA V+A + TPLH A GHL+ V +L++HGAD D G T +H AA
Sbjct: 30 VRILMANGADVNA-ADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASDVFGYTPLHLAA 88
Query: 113 QFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDK 169
+GH IV L+ G +VN D +GMT L +A K L+ +L+ GA QDK
Sbjct: 89 YWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAA-KWGYLEIVEVLLKHGADVNAQDK 144
Score = 55.1 bits (131), Expect = 1e-07, Method: Composition-based stats.
Identities = 46/143 (32%), Positives = 64/143 (44%), Gaps = 3/143 (2%)
Query: 67 GGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAK 126
G DL L A R G D V +L+ +GAD D+ G+T +H AA GH IV L+
Sbjct: 11 GSDLGRKLLE-AARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKH 69
Query: 127 GINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHV 186
G +V+ D G T L +AY L+ +L+ GA D G LH A
Sbjct: 70 GADVDASDVFGYTPLHLAAY-WGHLEIVEVLLKNGADVNAMDS-DGMTPLHLAAKWGYLE 127
Query: 187 AITTLVSHTSSLEIPNAQGLTPF 209
+ L+ H + + + G T F
Sbjct: 128 IVEVLLKHGADVNAQDKFGKTAF 150
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 89.7 bits (221), Expect = 4e-18, Method: Composition-based stats.
Identities = 51/116 (43%), Positives = 70/116 (60%), Gaps = 3/116 (2%)
Query: 27 GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQ-ATPLHWATRQGHLD 85
G DVN D+ +T LH AA +EI++ + GA V+AI D+ +TPLH A GHL+
Sbjct: 37 GADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAI--DIXGSTPLHLAALIGHLE 94
Query: 86 SVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTAL 141
V +L++HGAD +D+ G T +H AA GH IV L+ G +VN QD+ G TA
Sbjct: 95 IVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAF 150
Score = 70.5 bits (171), Expect = 3e-12, Method: Composition-based stats.
Identities = 46/114 (40%), Positives = 61/114 (53%), Gaps = 7/114 (6%)
Query: 62 IVDAIGGDLQAT------PLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFG 115
I+ A G D+ AT PLH A GHL+ V +L++HGAD +D GST +H AA G
Sbjct: 32 ILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIXGSTPLHLAALIG 91
Query: 116 HTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDK 169
H IV L+ G +VN D G T L +A + L+ +L+ GA QDK
Sbjct: 92 HLEIVEVLLKHGADVNAVDTWGDTPLHLAAI-MGHLEIVEVLLKHGADVNAQDK 144
Score = 60.1 bits (144), Expect = 3e-09, Method: Composition-based stats.
Identities = 46/143 (32%), Positives = 66/143 (46%), Gaps = 3/143 (2%)
Query: 67 GGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAK 126
G DL L A R G D V +L+ +GAD D+ G T +H AA +GH IV L+
Sbjct: 11 GSDLGKKLLE-AARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKH 69
Query: 127 GINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHV 186
G +VN D G T L +A + L+ +L+ GA D G+ LH A +
Sbjct: 70 GADVNAIDIXGSTPLHLAAL-IGHLEIVEVLLKHGADVNAVDT-WGDTPLHLAAIMGHLE 127
Query: 187 AITTLVSHTSSLEIPNAQGLTPF 209
+ L+ H + + + G T F
Sbjct: 128 IVEVLLKHGADVNAQDKFGKTAF 150
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 89.7 bits (221), Expect = 4e-18, Method: Composition-based stats.
Identities = 51/119 (42%), Positives = 70/119 (58%), Gaps = 3/119 (2%)
Query: 24 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQA-TPLHWATRQG 82
+ G DVN D+ +T LH AA++ +EI++ + GA VDA D+ TPLH A G
Sbjct: 34 IANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDA--ADVYGFTPLHLAAMTG 91
Query: 83 HLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTAL 141
HL+ V +L+++GAD D GST +H AA GH IV L+ G +VN QD+ G TA
Sbjct: 92 HLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGADVNAQDKFGKTAF 150
Score = 70.9 bits (172), Expect = 2e-12, Method: Composition-based stats.
Identities = 45/117 (38%), Positives = 64/117 (54%), Gaps = 2/117 (1%)
Query: 53 MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 112
++ I+ GA V+A+ + TPLH A GHL+ V +L++HGAD D G T +H AA
Sbjct: 30 VRILIANGADVNAVD-NTGLTPLHLAAVSGHLEIVEVLLKHGADVDAADVYGFTPLHLAA 88
Query: 113 QFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDK 169
GH IV L+ G +VN D G T L +A + L+ +L+ +GA QDK
Sbjct: 89 MTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADE-GHLEIVEVLLKYGADVNAQDK 144
Score = 55.8 bits (133), Expect = 7e-08, Method: Composition-based stats.
Identities = 45/143 (31%), Positives = 67/143 (46%), Gaps = 3/143 (2%)
Query: 67 GGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAK 126
G DL L A R G D V +LI +GAD +D+ G T +H AA GH IV L+
Sbjct: 11 GSDLGKKLLE-AARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKH 69
Query: 127 GINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHV 186
G +V+ D G T L +A L+ +L+ +GA D + G+ LH A +
Sbjct: 70 GADVDAADVYGFTPLHLAAM-TGHLEIVEVLLKYGADVNAFD-MTGSTPLHLAADEGHLE 127
Query: 187 AITTLVSHTSSLEIPNAQGLTPF 209
+ L+ + + + + G T F
Sbjct: 128 IVEVLLKYGADVNAQDKFGKTAF 150
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 88.2 bits (217), Expect = 1e-17, Method: Composition-based stats.
Identities = 50/115 (43%), Positives = 67/115 (58%), Gaps = 1/115 (0%)
Query: 27 GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDS 86
G DVN D + T LH AA +EI++ + GA V+A D TPLH A R+GHL+
Sbjct: 37 GADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKD-GYTPLHLAAREGHLEI 95
Query: 87 VVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTAL 141
V +L++ GAD D +G T +H AA+ GH IV L+ G +VN QD+ G TA
Sbjct: 96 VEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAF 150
Score = 75.5 bits (184), Expect = 7e-14, Method: Composition-based stats.
Identities = 45/117 (38%), Positives = 68/117 (58%), Gaps = 2/117 (1%)
Query: 53 MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 112
++ ++ GA V+A D TPLH A R+GHL+ V +L++ GAD D +G T +H AA
Sbjct: 30 VRILMANGADVNAKDKD-GYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAA 88
Query: 113 QFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDK 169
+ GH IV L+ G +VN +D++G T L +A + L+ +L+ GA QDK
Sbjct: 89 REGHLEIVEVLLKAGADVNAKDKDGYTPLHLAA-REGHLEIVEVLLKAGADVNAQDK 144
Score = 61.6 bits (148), Expect = 1e-09, Method: Composition-based stats.
Identities = 35/83 (42%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Query: 24 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 83
++AG DVN D + T LH AA +EI++ + GA V+A D TPLH A R+GH
Sbjct: 67 LKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKD-GYTPLHLAAREGH 125
Query: 84 LDSVVLLIQHGADPTLMDSEGST 106
L+ V +L++ GAD D G T
Sbjct: 126 LEIVEVLLKAGADVNAQDKFGKT 148
Score = 60.8 bits (146), Expect = 2e-09, Method: Composition-based stats.
Identities = 46/143 (32%), Positives = 69/143 (48%), Gaps = 3/143 (2%)
Query: 67 GGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAK 126
G DL L A R G D V +L+ +GAD D +G T +H AA+ GH IV L+
Sbjct: 11 GSDLGKKLLE-AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKA 69
Query: 127 GINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHV 186
G +VN +D++G T L +A + L+ +L+ GA +DK G LH A +
Sbjct: 70 GADVNAKDKDGYTPLHLAA-REGHLEIVEVLLKAGADVNAKDK-DGYTPLHLAAREGHLE 127
Query: 187 AITTLVSHTSSLEIPNAQGLTPF 209
+ L+ + + + G T F
Sbjct: 128 IVEVLLKAGADVNAQDKFGKTAF 150
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 87.8 bits (216), Expect = 1e-17, Method: Composition-based stats.
Identities = 50/115 (43%), Positives = 66/115 (57%), Gaps = 1/115 (0%)
Query: 27 GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDS 86
G DVN D+ T LH AA N +EI++ + GA V+A+ TPL A GHL+
Sbjct: 37 GADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVD-HAGMTPLRLAALFGHLEI 95
Query: 87 VVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTAL 141
V +L+++GAD D EG T +H AA FGH IV L+ G +VN QD+ G TA
Sbjct: 96 VEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAF 150
Score = 67.0 bits (162), Expect = 3e-11, Method: Composition-based stats.
Identities = 45/115 (39%), Positives = 61/115 (53%), Gaps = 9/115 (7%)
Query: 62 IVDAIGGDLQA------TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFG 115
I+ A G D+ A TPLH A GHL+ V +L+++GAD +D G T + AA FG
Sbjct: 32 ILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFG 91
Query: 116 HTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFS-LDPTRLLITFGASTTIQDK 169
H IV L+ G +VN D G T L +A +F L+ +L+ GA QDK
Sbjct: 92 HLEIVEVLLKNGADVNANDMEGHTPLHLAA--MFGHLEIVEVLLKNGADVNAQDK 144
Score = 57.0 bits (136), Expect = 3e-08, Method: Composition-based stats.
Identities = 47/144 (32%), Positives = 68/144 (47%), Gaps = 5/144 (3%)
Query: 67 GGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAK 126
G DL L A R G D V +L+ +GAD D+ G T +H AA GH IV L+
Sbjct: 11 GSDLGKKLLE-AARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKN 69
Query: 127 GINVNLQDRNGMTALMWSAYKVFS-LDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNH 185
G +VN D GMT L +A +F L+ +L+ GA D + G+ LH A +
Sbjct: 70 GADVNAVDHAGMTPLRLAA--LFGHLEIVEVLLKNGADVNAND-MEGHTPLHLAAMFGHL 126
Query: 186 VAITTLVSHTSSLEIPNAQGLTPF 209
+ L+ + + + + G T F
Sbjct: 127 EIVEVLLKNGADVNAQDKFGKTAF 150
Score = 52.0 bits (123), Expect = 8e-07, Method: Composition-based stats.
Identities = 32/84 (38%), Positives = 48/84 (57%), Gaps = 3/84 (3%)
Query: 24 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQA-TPLHWATRQG 82
++ G DVN D +T L AA+ +EI++ + GA V+A D++ TPLH A G
Sbjct: 67 LKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNA--NDMEGHTPLHLAAMFG 124
Query: 83 HLDSVVLLIQHGADPTLMDSEGST 106
HL+ V +L+++GAD D G T
Sbjct: 125 HLEIVEVLLKNGADVNAQDKFGKT 148
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 87.0 bits (214), Expect = 3e-17, Method: Composition-based stats.
Identities = 51/115 (44%), Positives = 67/115 (58%), Gaps = 1/115 (0%)
Query: 27 GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDS 86
G DVN D T LH AA +EI++ + GA V+A L TPLH A R+GHL+
Sbjct: 37 GADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNA-KDSLGVTPLHLAARRGHLEI 95
Query: 87 VVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTAL 141
V +L+++GAD DS G T +H AA+ GH IV L+ G +VN QD+ G TA
Sbjct: 96 VEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGADVNAQDKFGKTAF 150
Score = 70.5 bits (171), Expect = 3e-12, Method: Composition-based stats.
Identities = 46/114 (40%), Positives = 62/114 (54%), Gaps = 7/114 (6%)
Query: 62 IVDAIGGDLQA------TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFG 115
I+ A G D+ A TPLH A GHL+ V +L+++GAD DS G T +H AA+ G
Sbjct: 32 ILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKDSLGVTPLHLAARRG 91
Query: 116 HTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDK 169
H IV L+ G +VN D +G T L +A K L+ +L+ GA QDK
Sbjct: 92 HLEIVEVLLKNGADVNASDSHGFTPLHLAA-KRGHLEIVEVLLKNGADVNAQDK 144
Score = 61.2 bits (147), Expect = 1e-09, Method: Composition-based stats.
Identities = 47/143 (32%), Positives = 67/143 (46%), Gaps = 3/143 (2%)
Query: 67 GGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAK 126
G DL L A R G D V +L+ +GAD D G T +H AA FGH IV L+
Sbjct: 11 GSDLGKKLLE-AARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKN 69
Query: 127 GINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHV 186
G +VN +D G+T L +A + L+ +L+ GA D HG LH A +
Sbjct: 70 GADVNAKDSLGVTPLHLAARR-GHLEIVEVLLKNGADVNASDS-HGFTPLHLAAKRGHLE 127
Query: 187 AITTLVSHTSSLEIPNAQGLTPF 209
+ L+ + + + + G T F
Sbjct: 128 IVEVLLKNGADVNAQDKFGKTAF 150
Score = 58.5 bits (140), Expect = 1e-08, Method: Composition-based stats.
Identities = 35/84 (41%), Positives = 49/84 (58%), Gaps = 3/84 (3%)
Query: 24 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQA-TPLHWATRQG 82
++ G DVN DS VT LH AA +EI++ + GA V+A D TPLH A ++G
Sbjct: 67 LKNGADVNAKDSLGVTPLHLAARRGHLEIVEVLLKNGADVNA--SDSHGFTPLHLAAKRG 124
Query: 83 HLDSVVLLIQHGADPTLMDSEGST 106
HL+ V +L+++GAD D G T
Sbjct: 125 HLEIVEVLLKNGADVNAQDKFGKT 148
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 86.7 bits (213), Expect = 4e-17, Method: Composition-based stats.
Identities = 49/113 (43%), Positives = 66/113 (58%), Gaps = 1/113 (0%)
Query: 27 GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDS 86
G DVN D + T LH AA +EI++ + GA V+A D TPLH A R+GHL+
Sbjct: 25 GADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKD-GYTPLHLAAREGHLEI 83
Query: 87 VVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMT 139
V +L++ GAD D +G T +H AA+ GH IV L+ G +VN QD+ G T
Sbjct: 84 VEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKT 136
Score = 75.5 bits (184), Expect = 7e-14, Method: Composition-based stats.
Identities = 45/117 (38%), Positives = 68/117 (58%), Gaps = 2/117 (1%)
Query: 53 MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 112
++ ++ GA V+A D TPLH A R+GHL+ V +L++ GAD D +G T +H AA
Sbjct: 18 VRILMANGADVNAKDKD-GYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAA 76
Query: 113 QFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDK 169
+ GH IV L+ G +VN +D++G T L +A + L+ +L+ GA QDK
Sbjct: 77 REGHLEIVEVLLKAGADVNAKDKDGYTPLHLAA-REGHLEIVEVLLKAGADVNAQDK 132
Score = 65.9 bits (159), Expect = 6e-11, Method: Composition-based stats.
Identities = 40/100 (40%), Positives = 54/100 (54%), Gaps = 1/100 (1%)
Query: 24 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 83
++AG DVN D + T LH AA +EI++ + GA V+A D TPLH A R+GH
Sbjct: 55 LKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKD-GYTPLHLAAREGH 113
Query: 84 LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYL 123
L+ V +L++ GAD D G T A + GH I L
Sbjct: 114 LEIVEVLLKAGADVNAQDKFGKTPFDLAIREGHEDIAEVL 153
Score = 63.9 bits (154), Expect = 2e-10, Method: Composition-based stats.
Identities = 44/134 (32%), Positives = 67/134 (50%), Gaps = 2/134 (1%)
Query: 78 ATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNG 137
A R G D V +L+ +GAD D +G T +H AA+ GH IV L+ G +VN +D++G
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDG 68
Query: 138 MTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSS 197
T L +A + L+ +L+ GA +DK G LH A + + L+ +
Sbjct: 69 YTPLHLAA-REGHLEIVEVLLKAGADVNAKDK-DGYTPLHLAAREGHLEIVEVLLKAGAD 126
Query: 198 LEIPNAQGLTPFML 211
+ + G TPF L
Sbjct: 127 VNAQDKFGKTPFDL 140
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 86.7 bits (213), Expect = 4e-17, Method: Composition-based stats.
Identities = 49/113 (43%), Positives = 66/113 (58%), Gaps = 1/113 (0%)
Query: 27 GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDS 86
G DVN D + T LH AA +EI++ + GA V+A D TPLH A R+GHL+
Sbjct: 25 GADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKD-GYTPLHLAAREGHLEI 83
Query: 87 VVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMT 139
V +L++ GAD D +G T +H AA+ GH IV L+ G +VN QD+ G T
Sbjct: 84 VEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKT 136
Score = 75.5 bits (184), Expect = 7e-14, Method: Composition-based stats.
Identities = 45/117 (38%), Positives = 68/117 (58%), Gaps = 2/117 (1%)
Query: 53 MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 112
++ ++ GA V+A D TPLH A R+GHL+ V +L++ GAD D +G T +H AA
Sbjct: 18 VRILMANGADVNAKDKD-GYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAA 76
Query: 113 QFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDK 169
+ GH IV L+ G +VN +D++G T L +A + L+ +L+ GA QDK
Sbjct: 77 REGHLEIVEVLLKAGADVNAKDKDGYTPLHLAA-REGHLEIVEVLLKAGADVNAQDK 132
Score = 65.1 bits (157), Expect = 1e-10, Method: Composition-based stats.
Identities = 45/138 (32%), Positives = 69/138 (50%), Gaps = 2/138 (1%)
Query: 78 ATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNG 137
A R G D V +L+ +GAD D +G T +H AA+ GH IV L+ G +VN +D++G
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDG 68
Query: 138 MTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSS 197
T L +A + L+ +L+ GA +DK G LH A + + L+ +
Sbjct: 69 YTPLHLAA-REGHLEIVEVLLKAGADVNAKDK-DGYTPLHLAAREGHLEIVEVLLKAGAD 126
Query: 198 LEIPNAQGLTPFMLLEEN 215
+ + G TPF L +N
Sbjct: 127 VNAQDKFGKTPFDLAIDN 144
Score = 62.4 bits (150), Expect = 7e-10, Method: Composition-based stats.
Identities = 39/100 (39%), Positives = 53/100 (53%), Gaps = 1/100 (1%)
Query: 24 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 83
++AG DVN D + T LH AA +EI++ + GA V+A D TPLH A R+GH
Sbjct: 55 LKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKD-GYTPLHLAAREGH 113
Query: 84 LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYL 123
L+ V +L++ GAD D G T A G+ I L
Sbjct: 114 LEIVEVLLKAGADVNAQDKFGKTPFDLAIDNGNEDIAEVL 153
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 85.5 bits (210), Expect = 8e-17, Method: Composition-based stats.
Identities = 49/115 (42%), Positives = 65/115 (56%), Gaps = 1/115 (0%)
Query: 27 GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDS 86
G DVN D T LH AAI +EI++ + GA V+A + TPLH A GHL+
Sbjct: 37 GADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNA-ADKMGDTPLHLAALYGHLEI 95
Query: 87 VVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTAL 141
V +L+++GAD D+ G T +H AA GH IV L+ G +VN QD+ G TA
Sbjct: 96 VEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGADVNAQDKFGKTAF 150
Score = 75.5 bits (184), Expect = 8e-14, Method: Composition-based stats.
Identities = 45/117 (38%), Positives = 64/117 (54%), Gaps = 2/117 (1%)
Query: 53 MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 112
++ ++ GA V+A D TPLH A +GHL+ V +L++HGAD D G T +H AA
Sbjct: 30 VRILMANGADVNA-EDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKMGDTPLHLAA 88
Query: 113 QFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDK 169
+GH IV L+ G +VN D G T L +A L+ +L+ +GA QDK
Sbjct: 89 LYGHLEIVEVLLKNGADVNATDTYGFTPLHLAA-DAGHLEIVEVLLKYGADVNAQDK 144
Score = 55.5 bits (132), Expect = 9e-08, Method: Composition-based stats.
Identities = 46/143 (32%), Positives = 65/143 (45%), Gaps = 3/143 (2%)
Query: 67 GGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAK 126
G DL L A R G D V +L+ +GAD D G T +H AA GH IV L+
Sbjct: 11 GSDLGKKLLE-AARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKH 69
Query: 127 GINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHV 186
G +VN D+ G T L +A L+ +L+ GA D +G LH A A +
Sbjct: 70 GADVNAADKMGDTPLHLAAL-YGHLEIVEVLLKNGADVNATDT-YGFTPLHLAADAGHLE 127
Query: 187 AITTLVSHTSSLEIPNAQGLTPF 209
+ L+ + + + + G T F
Sbjct: 128 IVEVLLKYGADVNAQDKFGKTAF 150
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 85.1 bits (209), Expect = 9e-17, Method: Composition-based stats.
Identities = 49/115 (42%), Positives = 64/115 (55%), Gaps = 1/115 (0%)
Query: 27 GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDS 86
G DVN D +T LH AA N ++EI++ + GA V+A TPLH A GHL+
Sbjct: 29 GADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNA-SDSAGITPLHLAAYDGHLEI 87
Query: 87 VVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTAL 141
V +L++HGAD D G T +H AA G IV L+ G +VN QD G+TA
Sbjct: 88 VEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVLLKHGADVNAQDALGLTAF 142
Score = 68.6 bits (166), Expect = 1e-11, Method: Composition-based stats.
Identities = 52/144 (36%), Positives = 72/144 (50%), Gaps = 9/144 (6%)
Query: 27 GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDS 86
GQD+ + LL AA E+ + ++ GA V+A D TPLH A G L+
Sbjct: 3 GQDLGK------KLLEAAAAGQDDEV-RILMANGADVNATD-DNGLTPLHLAAANGQLEI 54
Query: 87 VVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAY 146
V +L+++GAD DS G T +H AA GH IV L+ G +VN DR G T L +A
Sbjct: 55 VEVLLKNGADVNASDSAGITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAAL 114
Query: 147 KVFSLDPTRLLITFGASTTIQDKI 170
L+ +L+ GA QD +
Sbjct: 115 S-GQLEIVEVLLKHGADVNAQDAL 137
Score = 62.4 bits (150), Expect = 6e-10, Method: Composition-based stats.
Identities = 48/145 (33%), Positives = 66/145 (45%), Gaps = 3/145 (2%)
Query: 65 AIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLV 124
A G DL L A G D V +L+ +GAD D G T +H AA G IV L+
Sbjct: 1 AFGQDLGKKLLE-AAAAGQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLL 59
Query: 125 AKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKN 184
G +VN D G+T L +AY L+ +L+ GA D+ G LH A +
Sbjct: 60 KNGADVNASDSAGITPLHLAAYD-GHLEIVEVLLKHGADVNAYDRA-GWTPLHLAALSGQ 117
Query: 185 HVAITTLVSHTSSLEIPNAQGLTPF 209
+ L+ H + + +A GLT F
Sbjct: 118 LEIVEVLLKHGADVNAQDALGLTAF 142
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 85.1 bits (209), Expect = 9e-17, Method: Composition-based stats.
Identities = 50/116 (43%), Positives = 70/116 (60%), Gaps = 3/116 (2%)
Query: 27 GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQ-ATPLHWATRQGHLD 85
G DVN D+ T LH AA +EI++ + GA V+A+ D +TPLH A ++GHL+
Sbjct: 37 GADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNAL--DFSGSTPLHLAAKRGHLE 94
Query: 86 SVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTAL 141
V +L+++GAD D+ GST +H AA GH IV L+ G +VN QD+ G TA
Sbjct: 95 IVEVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVLLKYGADVNAQDKFGKTAF 150
Score = 73.6 bits (179), Expect = 3e-13, Method: Composition-based stats.
Identities = 46/114 (40%), Positives = 63/114 (55%), Gaps = 7/114 (6%)
Query: 62 IVDAIGGDLQA------TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFG 115
I+ A G D+ A TPLH A R GHL+ V +L+++GAD +D GST +H AA+ G
Sbjct: 32 ILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALDFSGSTPLHLAAKRG 91
Query: 116 HTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDK 169
H IV L+ G +VN D G T L +A L+ +L+ +GA QDK
Sbjct: 92 HLEIVEVLLKYGADVNADDTIGSTPLHLAA-DTGHLEIVEVLLKYGADVNAQDK 144
Score = 62.4 bits (150), Expect = 7e-10, Method: Composition-based stats.
Identities = 47/143 (32%), Positives = 69/143 (48%), Gaps = 3/143 (2%)
Query: 67 GGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAK 126
G DL L A R G D V +L+ +GAD D+ G T +H AA+ GH IV L+
Sbjct: 11 GSDLGKKLLE-AARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKN 69
Query: 127 GINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHV 186
G +VN D +G T L +A K L+ +L+ +GA D I G+ LH A +
Sbjct: 70 GADVNALDFSGSTPLHLAA-KRGHLEIVEVLLKYGADVNADDTI-GSTPLHLAADTGHLE 127
Query: 187 AITTLVSHTSSLEIPNAQGLTPF 209
+ L+ + + + + G T F
Sbjct: 128 IVEVLLKYGADVNAQDKFGKTAF 150
Score = 53.9 bits (128), Expect = 2e-07, Method: Composition-based stats.
Identities = 32/83 (38%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 24 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 83
++ G DVN D T LH AA +EI++ + GA V+A + +TPLH A GH
Sbjct: 67 LKNGADVNALDFSGSTPLHLAAKRGHLEIVEVLLKYGADVNA-DDTIGSTPLHLAADTGH 125
Query: 84 LDSVVLLIQHGADPTLMDSEGST 106
L+ V +L+++GAD D G T
Sbjct: 126 LEIVEVLLKYGADVNAQDKFGKT 148
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 84.3 bits (207), Expect = 2e-16, Method: Composition-based stats.
Identities = 51/115 (44%), Positives = 65/115 (56%), Gaps = 1/115 (0%)
Query: 27 GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDS 86
G DVN D T LH AA +EI++ + GA V+A + ATPLH A GHL+
Sbjct: 37 GADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNA-WDNYGATPLHLAADNGHLEI 95
Query: 87 VVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTAL 141
V +L++HGAD D EG T +H AA GH IV L+ G +VN QD+ G TA
Sbjct: 96 VEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGADVNAQDKFGKTAF 150
Score = 76.6 bits (187), Expect = 4e-14, Method: Composition-based stats.
Identities = 45/117 (38%), Positives = 67/117 (57%), Gaps = 2/117 (1%)
Query: 53 MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 112
++ ++ GA V+A L TPLH A + GHL+ V +L+++GAD D+ G+T +H AA
Sbjct: 30 VRILMANGADVNATDW-LGHTPLHLAAKTGHLEIVEVLLKYGADVNAWDNYGATPLHLAA 88
Query: 113 QFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDK 169
GH IV L+ G +VN +D G T L +AY L+ +L+ +GA QDK
Sbjct: 89 DNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYD-GHLEIVEVLLKYGADVNAQDK 144
Score = 56.2 bits (134), Expect = 5e-08, Method: Composition-based stats.
Identities = 46/143 (32%), Positives = 65/143 (45%), Gaps = 3/143 (2%)
Query: 67 GGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAK 126
G DL L A R G D V +L+ +GAD D G T +H AA+ GH IV L+
Sbjct: 11 GSDLGKKLLE-AARAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKY 69
Query: 127 GINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHV 186
G +VN D G T L +A L+ +L+ GA +D G LH A Y +
Sbjct: 70 GADVNAWDNYGATPLHLAADN-GHLEIVEVLLKHGADVNAKD-YEGFTPLHLAAYDGHLE 127
Query: 187 AITTLVSHTSSLEIPNAQGLTPF 209
+ L+ + + + + G T F
Sbjct: 128 IVEVLLKYGADVNAQDKFGKTAF 150
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 83.6 bits (205), Expect = 3e-16, Method: Composition-based stats.
Identities = 49/115 (42%), Positives = 64/115 (55%), Gaps = 1/115 (0%)
Query: 27 GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDS 86
G DVN D T LH AA +EI++ + GA V+A L TPLH A +GHL+
Sbjct: 37 GADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNA-DDSLGVTPLHLAADRGHLEV 95
Query: 87 VVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTAL 141
V +L+++GAD D G T +H AA GH IV L+ G +VN QD+ G TA
Sbjct: 96 VEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGADVNAQDKFGKTAF 150
Score = 71.2 bits (173), Expect = 1e-12, Method: Composition-based stats.
Identities = 45/114 (39%), Positives = 61/114 (53%), Gaps = 7/114 (6%)
Query: 62 IVDAIGGDLQA------TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFG 115
I+ A G D+ A TPLH A GHL+ V +L+++GAD DS G T +H AA G
Sbjct: 32 ILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADDSLGVTPLHLAADRG 91
Query: 116 HTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDK 169
H +V L+ G +VN D NG T L +A + L+ +L+ GA QDK
Sbjct: 92 HLEVVEVLLKNGADVNANDHNGFTPLHLAA-NIGHLEIVEVLLKHGADVNAQDK 144
Score = 58.9 bits (141), Expect = 7e-09, Method: Composition-based stats.
Identities = 47/143 (32%), Positives = 66/143 (46%), Gaps = 3/143 (2%)
Query: 67 GGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAK 126
G DL L A R G D V +L+ +GAD D G T +H AA FGH IV L+
Sbjct: 11 GSDLGKKLLE-AARAGQDDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKN 69
Query: 127 GINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHV 186
G +VN D G+T L +A + L+ +L+ GA D +G LH A +
Sbjct: 70 GADVNADDSLGVTPLHLAADR-GHLEVVEVLLKNGADVNANDH-NGFTPLHLAANIGHLE 127
Query: 187 AITTLVSHTSSLEIPNAQGLTPF 209
+ L+ H + + + G T F
Sbjct: 128 IVEVLLKHGADVNAQDKFGKTAF 150
Score = 57.4 bits (137), Expect = 2e-08, Method: Composition-based stats.
Identities = 35/84 (41%), Positives = 47/84 (55%), Gaps = 3/84 (3%)
Query: 24 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQA-TPLHWATRQG 82
++ G DVN DS VT LH AA +E+++ + GA V+A D TPLH A G
Sbjct: 67 LKNGADVNADDSLGVTPLHLAADRGHLEVVEVLLKNGADVNA--NDHNGFTPLHLAANIG 124
Query: 83 HLDSVVLLIQHGADPTLMDSEGST 106
HL+ V +L++HGAD D G T
Sbjct: 125 HLEIVEVLLKHGADVNAQDKFGKT 148
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 81.3 bits (199), Expect = 1e-15, Method: Composition-based stats.
Identities = 49/115 (42%), Positives = 64/115 (55%), Gaps = 1/115 (0%)
Query: 27 GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDS 86
G DVN D + T LH AA EI++ + GA V+A D TPLH A GHL+
Sbjct: 37 GADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTD-GWTPLHLAADNGHLEI 95
Query: 87 VVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTAL 141
V +L+++GAD D+ G T +H AA GH IV L+ G +VN QD+ G TA
Sbjct: 96 VEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGADVNAQDKFGKTAF 150
Score = 72.0 bits (175), Expect = 9e-13, Method: Composition-based stats.
Identities = 45/117 (38%), Positives = 66/117 (56%), Gaps = 2/117 (1%)
Query: 53 MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 112
++ ++ GA V+A D +TPLH A GH + V +L++HGAD D++G T +H AA
Sbjct: 30 VRILMANGADVNA-HDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTDGWTPLHLAA 88
Query: 113 QFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDK 169
GH IV L+ G +VN QD G+T L +A + L+ +L+ GA QDK
Sbjct: 89 DNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADR-GHLEIVEVLLKHGADVNAQDK 144
Score = 65.9 bits (159), Expect = 6e-11, Method: Composition-based stats.
Identities = 48/143 (33%), Positives = 69/143 (48%), Gaps = 3/143 (2%)
Query: 67 GGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAK 126
G DL L A R G D V +L+ +GAD D +GST +H AA GH IV L+
Sbjct: 11 GSDLGKKLLE-AARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKH 69
Query: 127 GINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHV 186
G +VN +D +G T L +A L+ +L+ +GA QD +G LH A +
Sbjct: 70 GADVNARDTDGWTPLHLAADN-GHLEIVEVLLKYGADVNAQDA-YGLTPLHLAADRGHLE 127
Query: 187 AITTLVSHTSSLEIPNAQGLTPF 209
+ L+ H + + + G T F
Sbjct: 128 IVEVLLKHGADVNAQDKFGKTAF 150
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 80.9 bits (198), Expect = 2e-15, Method: Composition-based stats.
Identities = 49/115 (42%), Positives = 64/115 (55%), Gaps = 1/115 (0%)
Query: 27 GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDS 86
G DVN D T LH AA +EI++ + GA V+A L +TPLH A GHL+
Sbjct: 37 GADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYD-TLGSTPLHLAAHFGHLEI 95
Query: 87 VVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTAL 141
V +L+++GAD D G T +H AA GH IV L+ G +VN QD+ G TA
Sbjct: 96 VEVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGADVNAQDKFGKTAF 150
Score = 80.5 bits (197), Expect = 2e-15, Method: Composition-based stats.
Identities = 54/142 (38%), Positives = 79/142 (55%), Gaps = 5/142 (3%)
Query: 44 AAINNRIEIMKYFISQGAIVDAIGGDLQA-TPLHWATRQGHLDSVVLLIQHGADPTLMDS 102
AA R + ++ ++ GA V+A D+ TPLH A GHL+ V +L+++GAD D+
Sbjct: 21 AARAGRDDEVRILMANGADVNA--ADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYDT 78
Query: 103 EGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGA 162
GST +H AA FGH IV L+ G +VN +D NG+T L +A + L+ +L+ +GA
Sbjct: 79 LGSTPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLAANR-GHLEIVEVLLKYGA 137
Query: 163 STTIQDKIHGNVALHWAIYAKN 184
QDK G A +I N
Sbjct: 138 DVNAQDKF-GKTAFDISINNGN 158
Score = 56.6 bits (135), Expect = 3e-08, Method: Composition-based stats.
Identities = 36/97 (37%), Positives = 52/97 (53%), Gaps = 5/97 (5%)
Query: 10 WYEFELTKVFVGKCVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGD 69
W E+ +V + + G DVN D+ T LH AA +EI++ + GA V+A D
Sbjct: 57 WGHLEIVEVLL----KNGADVNAYDTLGSTPLHLAAHFGHLEIVEVLLKNGADVNA-KDD 111
Query: 70 LQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGST 106
TPLH A +GHL+ V +L+++GAD D G T
Sbjct: 112 NGITPLHLAANRGHLEIVEVLLKYGADVNAQDKFGKT 148
Score = 35.8 bits (81), Expect = 0.062, Method: Composition-based stats.
Identities = 29/102 (28%), Positives = 48/102 (47%), Gaps = 2/102 (1%)
Query: 110 QAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDK 169
+AA+ G V L+A G +VN D G T L +AY L+ +L+ GA D
Sbjct: 20 EAARAGRDDEVRILMANGADVNAADVVGWTPLHLAAY-WGHLEIVEVLLKNGADVNAYDT 78
Query: 170 IHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFML 211
+ G+ LH A + + + L+ + + + + G+TP L
Sbjct: 79 L-GSTPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGITPLHL 119
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 80.9 bits (198), Expect = 2e-15, Method: Composition-based stats.
Identities = 48/116 (41%), Positives = 66/116 (56%), Gaps = 3/116 (2%)
Query: 27 GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQA-TPLHWATRQGHLD 85
G DVN D +T LH N +EI++ + A V+A D TPLH A +GHL+
Sbjct: 37 GADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNA--SDKSGWTPLHLAAYRGHLE 94
Query: 86 SVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTAL 141
V +L+++GAD MD +G T +H AA+ GH IV L+ G +VN QD+ G TA
Sbjct: 95 IVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVNAQDKFGKTAF 150
Score = 64.3 bits (155), Expect = 2e-10, Method: Composition-based stats.
Identities = 41/114 (35%), Positives = 58/114 (50%), Gaps = 7/114 (6%)
Query: 62 IVDAIGGDLQA------TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFG 115
I+ A G D+ A TPLH GHL+ + +L+++ AD D G T +H AA G
Sbjct: 32 ILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNASDKSGWTPLHLAAYRG 91
Query: 116 HTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDK 169
H IV L+ G +VN D G T L +A + L+ +L+ +GA QDK
Sbjct: 92 HLEIVEVLLKYGADVNAMDYQGYTPLHLAA-EDGHLEIVEVLLKYGADVNAQDK 144
Score = 53.5 bits (127), Expect = 3e-07, Method: Composition-based stats.
Identities = 42/143 (29%), Positives = 64/143 (44%), Gaps = 3/143 (2%)
Query: 67 GGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAK 126
G DL L A R G D V +L+ +GAD D G T +H GH I+ L+
Sbjct: 11 GSDLGKKLLE-AARAGQDDEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKY 69
Query: 127 GINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHV 186
+VN D++G T L +AY+ L+ +L+ +GA D G LH A +
Sbjct: 70 AADVNASDKSGWTPLHLAAYR-GHLEIVEVLLKYGADVNAMD-YQGYTPLHLAAEDGHLE 127
Query: 187 AITTLVSHTSSLEIPNAQGLTPF 209
+ L+ + + + + G T F
Sbjct: 128 IVEVLLKYGADVNAQDKFGKTAF 150
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 80.1 bits (196), Expect = 3e-15, Method: Composition-based stats.
Identities = 45/104 (43%), Positives = 60/104 (57%), Gaps = 1/104 (0%)
Query: 24 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 83
+EAG DVN D T LH AA N +E++K + GA V+A + + TPLH A R GH
Sbjct: 22 LEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGR-TPLHLAARNGH 80
Query: 84 LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKG 127
L+ V LL++ GAD D G T +H AA+ GH +V L+ G
Sbjct: 81 LEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 124
Score = 80.1 bits (196), Expect = 3e-15, Method: Composition-based stats.
Identities = 49/121 (40%), Positives = 70/121 (57%), Gaps = 5/121 (4%)
Query: 73 TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 132
TPLH A R GHL+ V LL++ GAD D G T +H AA+ GH +V L+ G +VN
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA 63
Query: 133 QDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKN-HVAITTL 191
+D+NG T L +A + L+ +LL+ GA +DK +G LH A A+N H+ + L
Sbjct: 64 KDKNGRTPLHLAA-RNGHLEVVKLLLEAGADVNAKDK-NGRTPLHLA--ARNGHLEVVKL 119
Query: 192 V 192
+
Sbjct: 120 L 120
Score = 59.3 bits (142), Expect = 6e-09, Method: Composition-based stats.
Identities = 33/72 (45%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Query: 24 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 83
+EAG DVN D T LH AA N +E++K + GA V+A + + TPLH A R GH
Sbjct: 55 LEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGR-TPLHLAARNGH 113
Query: 84 LDSVVLLIQHGA 95
L+ V LL++ GA
Sbjct: 114 LEVVKLLLEAGA 125
Score = 52.8 bits (125), Expect = 5e-07, Method: Composition-based stats.
Identities = 35/112 (31%), Positives = 55/112 (49%), Gaps = 2/112 (1%)
Query: 104 GSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGAS 163
G T +H AA+ GH +V L+ G +VN +D+NG T L +A + L+ +LL+ GA
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAA-RNGHLEVVKLLLEAGAD 60
Query: 164 TTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEEN 215
+DK +G LH A + + L+ + + + G TP L N
Sbjct: 61 VNAKDK-NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARN 111
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 79.0 bits (193), Expect = 7e-15, Method: Composition-based stats.
Identities = 46/115 (40%), Positives = 65/115 (56%), Gaps = 1/115 (0%)
Query: 27 GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDS 86
G D N D T LH AA +EI++ + GA V+A+ + TPLH A GHL+
Sbjct: 25 GADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTN-GTTPLHLAASLGHLEI 83
Query: 87 VVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTAL 141
V +L+++GAD D+ G T ++ AA +GH IV L+ G +VN QD+ G TA
Sbjct: 84 VEVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEVLLKHGADVNAQDKFGKTAF 138
Score = 73.9 bits (180), Expect = 2e-13, Method: Composition-based stats.
Identities = 45/114 (39%), Positives = 63/114 (55%), Gaps = 7/114 (6%)
Query: 62 IVDAIGGDLQA------TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFG 115
I+ A G D A TPLH A GHL+ V +L+++GAD +D+ G+T +H AA G
Sbjct: 20 ILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTNGTTPLHLAASLG 79
Query: 116 HTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDK 169
H IV L+ G +VN +D G+T L +AY L+ +L+ GA QDK
Sbjct: 80 HLEIVEVLLKYGADVNAKDATGITPLYLAAY-WGHLEIVEVLLKHGADVNAQDK 132
Score = 63.9 bits (154), Expect = 2e-10, Method: Composition-based stats.
Identities = 43/132 (32%), Positives = 63/132 (47%), Gaps = 2/132 (1%)
Query: 78 ATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNG 137
A R G D V +L+ +GAD D G T +H AA GH IV L+ G +VN D NG
Sbjct: 9 AARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTNG 68
Query: 138 MTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSS 197
T L +A + L+ +L+ +GA +D G L+ A Y + + L+ H +
Sbjct: 69 TTPLHLAA-SLGHLEIVEVLLKYGADVNAKDAT-GITPLYLAAYWGHLEIVEVLLKHGAD 126
Query: 198 LEIPNAQGLTPF 209
+ + G T F
Sbjct: 127 VNAQDKFGKTAF 138
Score = 53.1 bits (126), Expect = 4e-07, Method: Composition-based stats.
Identities = 36/100 (36%), Positives = 49/100 (49%), Gaps = 7/100 (7%)
Query: 27 GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIV---DAIGGDLQATPLHWATRQGH 83
G DVN D+ T LH AA +EI++ + GA V DA G TPL+ A GH
Sbjct: 58 GADVNAVDTNGTTPLHLAASLGHLEIVEVLLKYGADVNAKDATG----ITPLYLAAYWGH 113
Query: 84 LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYL 123
L+ V +L++HGAD D G T + G+ + L
Sbjct: 114 LEIVEVLLKHGADVNAQDKFGKTAFDISIDIGNEDLAEIL 153
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 73.6 bits (179), Expect = 3e-13, Method: Composition-based stats.
Identities = 39/89 (43%), Positives = 55/89 (61%), Gaps = 1/89 (1%)
Query: 53 MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 112
++ ++ GA V+A+ D TPLH A ++GHL+ V +L++HGAD DS G T +H AA
Sbjct: 30 VRILMANGADVNAMD-DAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWGRTPLHLAA 88
Query: 113 QFGHTRIVAYLVAKGINVNLQDRNGMTAL 141
GH IV L+ G +VN QD+ G TA
Sbjct: 89 TVGHLEIVEVLLEYGADVNAQDKFGKTAF 117
Score = 64.3 bits (155), Expect = 2e-10, Method: Composition-based stats.
Identities = 42/103 (40%), Positives = 54/103 (52%), Gaps = 2/103 (1%)
Query: 67 GGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAK 126
G DL L ATR G D V +L+ +GAD MD G T +H AA+ GH IV L+
Sbjct: 11 GSDLGKKLLE-ATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKH 69
Query: 127 GINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDK 169
G +VN D G T L +A V L+ +L+ +GA QDK
Sbjct: 70 GADVNASDSWGRTPLHLAA-TVGHLEIVEVLLEYGADVNAQDK 111
Score = 55.8 bits (133), Expect = 6e-08, Method: Composition-based stats.
Identities = 33/80 (41%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 27 GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDS 86
G DVN D VT LH AA +EI++ + GA V+A TPLH A GHL+
Sbjct: 37 GADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNA-SDSWGRTPLHLAATVGHLEI 95
Query: 87 VVLLIQHGADPTLMDSEGST 106
V +L+++GAD D G T
Sbjct: 96 VEVLLEYGADVNAQDKFGKT 115
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 79/143 (55%), Gaps = 2/143 (1%)
Query: 27 GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDS 86
G VN+ D + LH AA R EI+K + +GA V+A+ + TPLH+A + +
Sbjct: 63 GVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQN-GCTPLHYAASKNRHEI 121
Query: 87 VVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAY 146
V+L++ GA+P D +T +H+AA G+ +++ L+ + N+QD G T L A
Sbjct: 122 AVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHL-AC 180
Query: 147 KVFSLDPTRLLITFGASTTIQDK 169
++ +LL++ GAS I++K
Sbjct: 181 DEERVEEAKLLVSQGASIYIENK 203
Score = 72.0 bits (175), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 85/184 (46%), Gaps = 3/184 (1%)
Query: 34 DSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQH 93
D ++ T LHWA EI+++ + G V+ D +PLH A G + V L+
Sbjct: 37 DQDSRTALHWACSAGHTEIVEFLLQLGVPVND-KDDAGWSPLHIAASAGRDEIVKALLGK 95
Query: 94 GADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDP 153
GA ++ G T +H AA I L+ G N + +D TA+ +A K +L
Sbjct: 96 GAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAK-GNLKM 154
Query: 154 TRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLE 213
+L+ + AST IQD GN LH A + LVS +S+ I N + TP + +
Sbjct: 155 IHILLYYKASTNIQD-TEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVAK 213
Query: 214 ENIG 217
+G
Sbjct: 214 GGLG 217
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 64/128 (50%), Gaps = 5/128 (3%)
Query: 14 ELTKVFVGKCVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQAT 73
E+ K +GK G VN + T LH+AA NR EI + GA DA +AT
Sbjct: 87 EIVKALLGK----GAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDA-KDHYEAT 141
Query: 74 PLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQ 133
+H A +G+L + +L+ + A + D+EG+T +H A LV++G ++ ++
Sbjct: 142 AMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIE 201
Query: 134 DRNGMTAL 141
++ T L
Sbjct: 202 NKEEKTPL 209
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 73.2 bits (178), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 79/143 (55%), Gaps = 2/143 (1%)
Query: 27 GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDS 86
G VN+ D + LH AA R EI+K + +GA V+A+ + TPLH+A + +
Sbjct: 64 GVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQN-GCTPLHYAASKNRHEI 122
Query: 87 VVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAY 146
V+L++ GA+P D +T +H+AA G+ +++ L+ + N+QD G T L A
Sbjct: 123 AVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHL-AC 181
Query: 147 KVFSLDPTRLLITFGASTTIQDK 169
++ +LL++ GAS I++K
Sbjct: 182 DEERVEEAKLLVSQGASIYIENK 204
Score = 72.0 bits (175), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 85/184 (46%), Gaps = 3/184 (1%)
Query: 34 DSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQH 93
D ++ T LHWA EI+++ + G V+ D +PLH A G + V L+
Sbjct: 38 DQDSRTALHWACSAGHTEIVEFLLQLGVPVND-KDDAGWSPLHIAASAGRDEIVKALLGK 96
Query: 94 GADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDP 153
GA ++ G T +H AA I L+ G N + +D TA+ +A K +L
Sbjct: 97 GAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAK-GNLKM 155
Query: 154 TRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLE 213
+L+ + AST IQD GN LH A + LVS +S+ I N + TP + +
Sbjct: 156 IHILLYYKASTNIQD-TEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVAK 214
Query: 214 ENIG 217
+G
Sbjct: 215 GGLG 218
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 64/128 (50%), Gaps = 5/128 (3%)
Query: 14 ELTKVFVGKCVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQAT 73
E+ K +GK G VN + T LH+AA NR EI + GA DA +AT
Sbjct: 88 EIVKALLGK----GAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDA-KDHYEAT 142
Query: 74 PLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQ 133
+H A +G+L + +L+ + A + D+EG+T +H A LV++G ++ ++
Sbjct: 143 AMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIE 202
Query: 134 DRNGMTAL 141
++ T L
Sbjct: 203 NKEEKTPL 210
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 72.4 bits (176), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 60/191 (31%), Positives = 86/191 (45%), Gaps = 3/191 (1%)
Query: 19 FVGKCVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWA 78
V ++ G N + + T LH AA E+ KY + A V+A D Q TPLH A
Sbjct: 29 IVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQ-TPLHCA 87
Query: 79 TRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGM 138
R GH + V LL+++ A+P L + G T +H AA+ GH V L+ K + + G
Sbjct: 88 ARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGF 147
Query: 139 TALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSL 198
T L +A K + LL+ A K +G LH A++ N + L+ S
Sbjct: 148 TPLHVAA-KYGKVRVAELLLERDAHPNAAGK-NGLTPLHVAVHHNNLDIVKLLLPRGGSP 205
Query: 199 EIPNAQGLTPF 209
P G TP
Sbjct: 206 HSPAWNGYTPL 216
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 52/104 (50%), Gaps = 1/104 (0%)
Query: 38 VTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADP 97
+T LH A + + I G +VDA + TPLH A+ G++ V L+QH AD
Sbjct: 279 LTPLHLVAQEGHVPVADVLIKHGVMVDATT-RMGYTPLHVASHYGNIKLVKFLLQHQADV 337
Query: 98 TLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTAL 141
G + +HQAAQ GHT IV L+ G + N +G T L
Sbjct: 338 NAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPL 381
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 83/179 (46%), Gaps = 3/179 (1%)
Query: 31 NEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLL 90
N +T LH A +N ++I+K + +G + + TPLH A +Q ++ L
Sbjct: 173 NAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWN-GYTPLHIAAKQNQVEVARSL 231
Query: 91 IQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFS 150
+Q+G +G T +H AAQ GH +VA L++K N NL +++G+T L A +
Sbjct: 232 LQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQE-GH 290
Query: 151 LDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPF 209
+ +LI G ++ G LH A + N + L+ H + + G +P
Sbjct: 291 VPVADVLIKHGVMVDATTRM-GYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPL 348
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 66/137 (48%), Gaps = 2/137 (1%)
Query: 73 TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 132
TPLH A+ GHL V L+Q GA P + + + T +H AA+ GHT + YL+ VN
Sbjct: 16 TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNA 75
Query: 133 QDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLV 192
+ ++ T L +A ++ + +LL+ A+ + G+ LH A + + L+
Sbjct: 76 KAKDDQTPLHCAA-RIGHTNMVKLLLENNANPNLATTA-GHTPLHIAAREGHVETVLALL 133
Query: 193 SHTSSLEIPNAQGLTPF 209
+S +G TP
Sbjct: 134 EKEASQACMTKKGFTPL 150
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 68/137 (49%), Gaps = 2/137 (1%)
Query: 27 GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDS 86
G N + VT LH AA E++ +S+ A + +G TPLH ++GH+
Sbjct: 235 GGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGN-LGNKSGLTPLHLVAQEGHVPV 293
Query: 87 VVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAY 146
+LI+HG G T +H A+ +G+ ++V +L+ +VN + + G + L +A
Sbjct: 294 ADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQ 353
Query: 147 KVFSLDPTRLLITFGAS 163
+ + D LL+ GAS
Sbjct: 354 QGHT-DIVTLLLKNGAS 369
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
Query: 39 TLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPT 98
T LH A+ I+++K+ + A V+A L +PLH A +QGH D V LL+++GA P
Sbjct: 313 TPLHVASHYGNIKLVKFLLQHQADVNA-KTKLGYSPLHQAAQQGHTDIVTLLLKNGASPN 371
Query: 99 LMDSEGSTCIHQAAQFGHTRIVAYL 123
+ S+G+T + A + G+ + L
Sbjct: 372 EVSSDGTTPLAIAKRLGYISVTDVL 396
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 72.0 bits (175), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 78/143 (54%), Gaps = 2/143 (1%)
Query: 27 GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDS 86
G VN+ D + LH AA R EI+K + +GA V+A+ + TPLH+A + +
Sbjct: 63 GVPVNDKDDAGWSPLHIAASAGRDEIVKALLVKGAHVNAVNQN-GCTPLHYAASKNRHEI 121
Query: 87 VVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAY 146
V+L++ GA+P D +T +H+AA G+ ++V L+ + N+QD G T L A
Sbjct: 122 AVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHL-AC 180
Query: 147 KVFSLDPTRLLITFGASTTIQDK 169
++ + L+T GAS I++K
Sbjct: 181 DEERVEEAKFLVTQGASIYIENK 203
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 85/184 (46%), Gaps = 3/184 (1%)
Query: 34 DSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQH 93
D ++ T LHWA EI+++ + G V+ D +PLH A G + V L+
Sbjct: 37 DQDSRTALHWACSAGHTEIVEFLLQLGVPVND-KDDAGWSPLHIAASAGRDEIVKALLVK 95
Query: 94 GADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDP 153
GA ++ G T +H AA I L+ G N + +D TA+ +A K +L
Sbjct: 96 GAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAK-GNLKM 154
Query: 154 TRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLE 213
+L+ + AST IQD GN LH A + LV+ +S+ I N + TP + +
Sbjct: 155 VHILLFYKASTNIQD-TEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAK 213
Query: 214 ENIG 217
+G
Sbjct: 214 GGLG 217
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 57/115 (49%), Gaps = 1/115 (0%)
Query: 27 GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDS 86
G VN + T LH+AA NR EI + GA DA AT +H A +G+L
Sbjct: 96 GAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDA-KDHYDATAMHRAAAKGNLKM 154
Query: 87 VVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTAL 141
V +L+ + A + D+EG+T +H A +LV +G ++ ++++ T L
Sbjct: 155 VHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPL 209
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 71.6 bits (174), Expect = 1e-12, Method: Composition-based stats.
Identities = 39/90 (43%), Positives = 54/90 (60%), Gaps = 1/90 (1%)
Query: 73 TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 132
TPLH A R GHL+ V LL++ GAD D G T +H AA+ GH +V L+ G +VN
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA 63
Query: 133 QDRNGMTALMWSAYKVFSLDPTRLLITFGA 162
+D+NG T L +A + L+ +LL+ GA
Sbjct: 64 KDKNGRTPLHLAA-RNGHLEVVKLLLEAGA 92
Score = 59.3 bits (142), Expect = 6e-09, Method: Composition-based stats.
Identities = 33/72 (45%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Query: 24 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 83
+EAG DVN D T LH AA N +E++K + GA V+A + + TPLH A R GH
Sbjct: 22 LEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGR-TPLHLAARNGH 80
Query: 84 LDSVVLLIQHGA 95
L+ V LL++ GA
Sbjct: 81 LEVVKLLLEAGA 92
Score = 48.9 bits (115), Expect = 8e-06, Method: Composition-based stats.
Identities = 33/90 (36%), Positives = 51/90 (56%), Gaps = 5/90 (5%)
Query: 104 GSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGAS 163
G T +H AA+ GH +V L+ G +VN +D+NG T L +A + L+ +LL+ GA
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAA-RNGHLEVVKLLLEAGAD 60
Query: 164 TTIQDKIHGNVALHWAIYAKN-HVAITTLV 192
+DK +G LH A A+N H+ + L+
Sbjct: 61 VNAKDK-NGRTPLHLA--ARNGHLEVVKLL 87
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 70.9 bits (172), Expect = 2e-12, Method: Composition-based stats.
Identities = 38/89 (42%), Positives = 54/89 (60%), Gaps = 1/89 (1%)
Query: 53 MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 112
++ ++ GA V+A+ D TPLH A ++GHL+ V +L++HGAD D G T +H AA
Sbjct: 30 VRILMANGADVNAMD-DAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWGRTPLHLAA 88
Query: 113 QFGHTRIVAYLVAKGINVNLQDRNGMTAL 141
GH IV L+ G +VN QD+ G TA
Sbjct: 89 TVGHLEIVEVLLEYGADVNAQDKFGKTAF 117
Score = 63.5 bits (153), Expect = 3e-10, Method: Composition-based stats.
Identities = 42/103 (40%), Positives = 55/103 (53%), Gaps = 2/103 (1%)
Query: 67 GGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAK 126
G DL L ATR G D V +L+ +GAD MD G T +H AA+ GH IV L+
Sbjct: 11 GSDLGKKLLE-ATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKH 69
Query: 127 GINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDK 169
G +VN +D G T L +A V L+ +L+ +GA QDK
Sbjct: 70 GADVNARDIWGRTPLHLAA-TVGHLEIVEVLLEYGADVNAQDK 111
Score = 55.5 bits (132), Expect = 9e-08, Method: Composition-based stats.
Identities = 35/82 (42%), Positives = 45/82 (54%), Gaps = 5/82 (6%)
Query: 27 GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDA--IGGDLQATPLHWATRQGHL 84
G DVN D VT LH AA +EI++ + GA V+A I G TPLH A GHL
Sbjct: 37 GADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWG---RTPLHLAATVGHL 93
Query: 85 DSVVLLIQHGADPTLMDSEGST 106
+ V +L+++GAD D G T
Sbjct: 94 EIVEVLLEYGADVNAQDKFGKT 115
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 70.9 bits (172), Expect = 2e-12, Method: Composition-based stats.
Identities = 38/89 (42%), Positives = 54/89 (60%), Gaps = 1/89 (1%)
Query: 53 MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 112
++ ++ GA V+A+ D TPLH A ++GHL+ V +L++HGAD D G T +H AA
Sbjct: 30 VRILMANGADVNAMD-DAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWGRTPLHLAA 88
Query: 113 QFGHTRIVAYLVAKGINVNLQDRNGMTAL 141
GH IV L+ G +VN QD+ G TA
Sbjct: 89 TVGHLEIVEVLLEYGADVNAQDKFGKTAF 117
Score = 63.2 bits (152), Expect = 4e-10, Method: Composition-based stats.
Identities = 42/103 (40%), Positives = 54/103 (52%), Gaps = 2/103 (1%)
Query: 67 GGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAK 126
G DL L ATR G D V +L+ +GAD MD G T +H AA+ GH IV L+
Sbjct: 11 GSDLGKKLLE-ATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKH 69
Query: 127 GINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDK 169
G +VN D G T L +A V L+ +L+ +GA QDK
Sbjct: 70 GADVNASDIWGRTPLHLAA-TVGHLEIVEVLLEYGADVNAQDK 111
Score = 55.8 bits (133), Expect = 6e-08, Method: Composition-based stats.
Identities = 34/81 (41%), Positives = 45/81 (55%), Gaps = 3/81 (3%)
Query: 27 GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQA-TPLHWATRQGHLD 85
G DVN D VT LH AA +EI++ + GA V+A D+ TPLH A GHL+
Sbjct: 37 GADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNA--SDIWGRTPLHLAATVGHLE 94
Query: 86 SVVLLIQHGADPTLMDSEGST 106
V +L+++GAD D G T
Sbjct: 95 IVEVLLEYGADVNAQDKFGKT 115
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 70.1 bits (170), Expect = 3e-12, Method: Composition-based stats.
Identities = 39/86 (45%), Positives = 51/86 (59%), Gaps = 6/86 (6%)
Query: 62 IVDAIGGDLQA------TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFG 115
I+ A G D+ A TPLH A HL+ V +L++HGAD D++GST +H AA FG
Sbjct: 32 ILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDGSTPLHLAALFG 91
Query: 116 HTRIVAYLVAKGINVNLQDRNGMTAL 141
H IV L+ G +VN QD+ G TA
Sbjct: 92 HLEIVEVLLKHGADVNAQDKFGKTAF 117
Score = 58.2 bits (139), Expect = 1e-08, Method: Composition-based stats.
Identities = 39/104 (37%), Positives = 54/104 (51%), Gaps = 4/104 (3%)
Query: 67 GGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAK 126
G DL L A R G D V +L+ +GAD D +G+T +H AA + H IV L+
Sbjct: 11 GSDLGKKLLE-AARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKH 69
Query: 127 GINVNLQDRNGMTALMWSAYKVFS-LDPTRLLITFGASTTIQDK 169
G +VN D +G T L +A +F L+ +L+ GA QDK
Sbjct: 70 GADVNAHDNDGSTPLHLAA--LFGHLEIVEVLLKHGADVNAQDK 111
Score = 57.8 bits (138), Expect = 2e-08, Method: Composition-based stats.
Identities = 34/80 (42%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
Query: 27 GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDS 86
G DVN D + T LH AA + +EI++ + GA V+A D +TPLH A GHL+
Sbjct: 37 GADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDND-GSTPLHLAALFGHLEI 95
Query: 87 VVLLIQHGADPTLMDSEGST 106
V +L++HGAD D G T
Sbjct: 96 VEVLLKHGADVNAQDKFGKT 115
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 75/152 (49%), Gaps = 6/152 (3%)
Query: 20 VGKCVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWAT 79
+ K +G VN + + LH AA++ R +++ + GA A D QA PLH A
Sbjct: 69 LAKVPASGLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNAD-QAVPLHLAC 127
Query: 80 RQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMT 139
+QGH V L+ A P D G+T + A GH +VA L+ G ++N + G T
Sbjct: 128 QQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNT 187
Query: 140 ALMWSAYK--VFSLDPTRLLITFGASTTIQDK 169
AL + + VF ++ LL+ GAS + +K
Sbjct: 188 ALHEAVIEKHVFVVE---LLLLHGASVQVLNK 216
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 69.3 bits (168), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 77/143 (53%), Gaps = 2/143 (1%)
Query: 27 GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDS 86
G VN+ D + LH AA EI+K + +GA V+A+ + TPLH+A + +
Sbjct: 63 GVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQN-GCTPLHYAASKNRHEI 121
Query: 87 VVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAY 146
V+L++ GA+P D +T +H+AA G+ ++V L+ + N+QD G T L A
Sbjct: 122 AVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHL-AC 180
Query: 147 KVFSLDPTRLLITFGASTTIQDK 169
++ + L+T GAS I++K
Sbjct: 181 DEERVEEAKFLVTQGASIYIENK 203
Score = 69.3 bits (168), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 85/184 (46%), Gaps = 3/184 (1%)
Query: 34 DSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQH 93
D ++ T LHWA EI+++ + G V+ D +PLH A G + V L+
Sbjct: 37 DQDSRTALHWACSAGHTEIVEFLLQLGVPVND-KDDAGWSPLHIAASAGXDEIVKALLVK 95
Query: 94 GADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDP 153
GA ++ G T +H AA I L+ G N + +D TA+ +A K +L
Sbjct: 96 GAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAK-GNLKM 154
Query: 154 TRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLE 213
+L+ + AST IQD GN LH A + LV+ +S+ I N + TP + +
Sbjct: 155 VHILLFYKASTNIQD-TEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAK 213
Query: 214 ENIG 217
+G
Sbjct: 214 GGLG 217
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 57/115 (49%), Gaps = 1/115 (0%)
Query: 27 GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDS 86
G VN + T LH+AA NR EI + GA DA AT +H A +G+L
Sbjct: 96 GAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDA-KDHYDATAMHRAAAKGNLKM 154
Query: 87 VVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTAL 141
V +L+ + A + D+EG+T +H A +LV +G ++ ++++ T L
Sbjct: 155 VHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPL 209
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 65.1 bits (157), Expect = 1e-10, Method: Composition-based stats.
Identities = 37/89 (41%), Positives = 54/89 (60%), Gaps = 1/89 (1%)
Query: 53 MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 112
++ ++ GA V+A+ D TPLH A + GHL+ V +L+++GAD D+ G T +H AA
Sbjct: 30 VRILMANGADVNALDED-GLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNFGITPLHLAA 88
Query: 113 QFGHTRIVAYLVAKGINVNLQDRNGMTAL 141
GH IV L+ G +VN QD+ G TA
Sbjct: 89 IRGHLEIVEVLLKHGADVNAQDKFGKTAF 117
Score = 63.9 bits (154), Expect = 3e-10, Method: Composition-based stats.
Identities = 40/103 (38%), Positives = 55/103 (53%), Gaps = 2/103 (1%)
Query: 67 GGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAK 126
G DL L A R G D V +L+ +GAD +D +G T +H AAQ GH IV L+
Sbjct: 11 GSDLGKKLLE-AARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKY 69
Query: 127 GINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDK 169
G +VN +D G+T L +A + L+ +L+ GA QDK
Sbjct: 70 GADVNAEDNFGITPLHLAAIR-GHLEIVEVLLKHGADVNAQDK 111
Score = 57.0 bits (136), Expect = 3e-08, Method: Composition-based stats.
Identities = 33/80 (41%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
Query: 27 GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDS 86
G DVN D + +T LH AA +EI++ + GA V+A + TPLH A +GHL+
Sbjct: 37 GADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNA-EDNFGITPLHLAAIRGHLEI 95
Query: 87 VVLLIQHGADPTLMDSEGST 106
V +L++HGAD D G T
Sbjct: 96 VEVLLKHGADVNAQDKFGKT 115
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 65.1 bits (157), Expect = 1e-10, Method: Composition-based stats.
Identities = 41/93 (44%), Positives = 52/93 (55%), Gaps = 1/93 (1%)
Query: 39 TLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPT 98
T LH AA N E +K +S+GA V+A D TPLH A + GH + V LL+ GAD
Sbjct: 11 TPLHNAAKNGHAEEVKKLLSKGADVNARSKD-GNTPLHLAAKNGHAEIVKLLLAKGADVN 69
Query: 99 LMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVN 131
+G+T H A + GH IV L AKG +VN
Sbjct: 70 ARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVN 102
Score = 60.1 bits (144), Expect = 4e-09, Method: Composition-based stats.
Identities = 29/67 (43%), Positives = 41/67 (61%)
Query: 73 TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 132
TPLH A + GH + V L+ GAD +G+T +H AA+ GH IV L+AKG +VN
Sbjct: 11 TPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNA 70
Query: 133 QDRNGMT 139
+ ++G T
Sbjct: 71 RSKDGNT 77
Score = 50.1 bits (118), Expect = 3e-06, Method: Composition-based stats.
Identities = 32/77 (41%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 20 VGKCVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWAT 79
V K + G DVN + T LH AA N EI+K +++GA V+A D TP H A
Sbjct: 25 VKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKD-GNTPEHLAK 83
Query: 80 RQGHLDSVVLLIQHGAD 96
+ GH + V LL GAD
Sbjct: 84 KNGHHEIVKLLDAKGAD 100
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 29/89 (32%), Positives = 46/89 (51%), Gaps = 2/89 (2%)
Query: 103 EGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGA 162
+G+T +H AA+ GH V L++KG +VN + ++G T L +A K + +LL+ GA
Sbjct: 8 DGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAA-KNGHAEIVKLLLAKGA 66
Query: 163 STTIQDKIHGNVALHWAIYAKNHVAITTL 191
+ K GN H A +H + L
Sbjct: 67 DVNARSK-DGNTPEHLAKKNGHHEIVKLL 94
>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein
pdb|2RFM|B Chain B, Structure Of A Thermophilic Ankyrin Repeat Protein
Length = 192
Score = 63.9 bits (154), Expect = 2e-10, Method: Composition-based stats.
Identities = 39/122 (31%), Positives = 66/122 (54%), Gaps = 3/122 (2%)
Query: 20 VGKCVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQA-TPLHWA 78
+ K VE + + D E T L WA NNR+ I + +S+G+ V+ D TPL W+
Sbjct: 51 IDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNT--KDFSGKTPLMWS 108
Query: 79 TRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGM 138
G+ + L++HGA+ + EG T + A+++G + IV L+ G +++ +D G+
Sbjct: 109 IIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGL 168
Query: 139 TA 140
TA
Sbjct: 169 TA 170
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 38/72 (52%)
Query: 73 TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 132
TPL A G +++ L+++ D EGST + A + I L++KG NVN
Sbjct: 37 TPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNT 96
Query: 133 QDRNGMTALMWS 144
+D +G T LMWS
Sbjct: 97 KDFSGKTPLMWS 108
Score = 38.5 bits (88), Expect = 0.011, Method: Composition-based stats.
Identities = 26/97 (26%), Positives = 46/97 (47%), Gaps = 1/97 (1%)
Query: 72 ATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVN 131
+T L WA + L L+ G++ D G T + + FG++ + +L+ G NVN
Sbjct: 69 STALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVN 128
Query: 132 LQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQD 168
++ G T L+ A K + + L+ GA + +D
Sbjct: 129 DRNLEGETPLI-VASKYGRSEIVKKLLELGADISARD 164
Score = 38.1 bits (87), Expect = 0.013, Method: Composition-based stats.
Identities = 30/100 (30%), Positives = 47/100 (47%), Gaps = 3/100 (3%)
Query: 22 KCVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQA-TPLHWATR 80
K + G +VN D T L W+ I E+ + + GA V+ +L+ TPL A++
Sbjct: 86 KLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVN--DRNLEGETPLIVASK 143
Query: 81 QGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIV 120
G + V L++ GAD + D G T A FG ++
Sbjct: 144 YGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVI 183
Score = 32.3 bits (72), Expect = 0.75, Method: Composition-based stats.
Identities = 29/111 (26%), Positives = 47/111 (42%), Gaps = 2/111 (1%)
Query: 101 DSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITF 160
DS T + A G + LV + +D G TAL+W A K L L++
Sbjct: 32 DSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIW-AVKNNRLGIAEKLLSK 90
Query: 161 GASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFML 211
G++ +D G L W+I L+ H +++ N +G TP ++
Sbjct: 91 GSNVNTKD-FSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIV 140
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 63.5 bits (153), Expect = 3e-10, Method: Composition-based stats.
Identities = 34/80 (42%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Query: 27 GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDS 86
G DVN D +T LH AA+N+ +EI++ + GA V+AI + TPLH GHL+
Sbjct: 37 GADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDA-IGETPLHLVAMYGHLEI 95
Query: 87 VVLLIQHGADPTLMDSEGST 106
V +L++HGAD D G T
Sbjct: 96 VEVLLKHGADVNAQDKFGKT 115
Score = 63.2 bits (152), Expect = 4e-10, Method: Composition-based stats.
Identities = 35/86 (40%), Positives = 49/86 (56%), Gaps = 6/86 (6%)
Query: 62 IVDAIGGDLQA------TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFG 115
I+ A G D+ A TPLH A HL+ V +L+++GAD +D+ G T +H A +G
Sbjct: 32 ILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAIGETPLHLVAMYG 91
Query: 116 HTRIVAYLVAKGINVNLQDRNGMTAL 141
H IV L+ G +VN QD+ G TA
Sbjct: 92 HLEIVEVLLKHGADVNAQDKFGKTAF 117
Score = 48.1 bits (113), Expect = 1e-05, Method: Composition-based stats.
Identities = 38/103 (36%), Positives = 47/103 (45%), Gaps = 2/103 (1%)
Query: 67 GGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAK 126
G DL L A R G D V +L+ +GAD D G T +H AA H IV L+
Sbjct: 11 GSDLGKKLLE-AARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKN 69
Query: 127 GINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDK 169
G +VN D G T L A L+ +L+ GA QDK
Sbjct: 70 GADVNAIDAIGETPLHLVAM-YGHLEIVEVLLKHGADVNAQDK 111
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 62.4 bits (150), Expect = 7e-10, Method: Composition-based stats.
Identities = 36/86 (41%), Positives = 50/86 (58%), Gaps = 6/86 (6%)
Query: 62 IVDAIGGDLQA------TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFG 115
I+ A G D+ A TPL+ AT GHL+ V +L+++GAD +D+ G T +H AA G
Sbjct: 32 ILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIG 91
Query: 116 HTRIVAYLVAKGINVNLQDRNGMTAL 141
H I L+ G +VN QD+ G TA
Sbjct: 92 HLEIAEVLLKHGADVNAQDKFGKTAF 117
Score = 53.5 bits (127), Expect = 3e-07, Method: Composition-based stats.
Identities = 37/103 (35%), Positives = 50/103 (48%), Gaps = 2/103 (1%)
Query: 67 GGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAK 126
G DL L A R G D V +L+ +GAD D G T ++ A GH IV L+
Sbjct: 11 GSDLGKKLLE-AARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKN 69
Query: 127 GINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDK 169
G +VN D G T L +A+ + L+ +L+ GA QDK
Sbjct: 70 GADVNAVDAIGFTPLHLAAF-IGHLEIAEVLLKHGADVNAQDK 111
Score = 53.5 bits (127), Expect = 3e-07, Method: Composition-based stats.
Identities = 30/80 (37%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 27 GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDS 86
G DVN D +T L+ A + +EI++ + GA V+A+ + TPLH A GHL+
Sbjct: 37 GADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDA-IGFTPLHLAAFIGHLEI 95
Query: 87 VVLLIQHGADPTLMDSEGST 106
+L++HGAD D G T
Sbjct: 96 AEVLLKHGADVNAQDKFGKT 115
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 62.4 bits (150), Expect = 8e-10, Method: Composition-based stats.
Identities = 36/110 (32%), Positives = 59/110 (53%), Gaps = 3/110 (2%)
Query: 29 DVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIG-GDLQATPLHWATRQGHLDSV 87
D+N+ D + LHWA R +++ I +GA ++ + GD TPLH A GH D V
Sbjct: 26 DLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGD--DTPLHLAASHGHRDIV 83
Query: 88 VLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNG 137
L+Q+ AD ++ G+ +H A +G ++ LVA G V++ ++ G
Sbjct: 84 QKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYG 133
Score = 50.8 bits (120), Expect = 2e-06, Method: Composition-based stats.
Identities = 27/80 (33%), Positives = 41/80 (51%)
Query: 67 GGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAK 126
G D +PLHWA R+G V +LI GA +M+ T +H AA GH IV L+
Sbjct: 30 GDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQY 89
Query: 127 GINVNLQDRNGMTALMWSAY 146
++N + +G L ++ +
Sbjct: 90 KADINAVNEHGNVPLHYACF 109
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 60.1 bits (144), Expect = 3e-09, Method: Composition-based stats.
Identities = 52/153 (33%), Positives = 72/153 (47%), Gaps = 22/153 (14%)
Query: 28 QDVNEPDSE--TVTLLHWAAINNRIEIMKYFISQGAIVDA--IGGDLQATPLHWATRQGH 83
Q VN D E T LH+AA NR+ +++Y + GA V A GG PLH A GH
Sbjct: 33 QSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGG---LVPLHNACSYGH 89
Query: 84 LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMW 143
+ LL++HGA + D T +H+AA G I L+ G + ++R+G T L
Sbjct: 90 YEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLD- 148
Query: 144 SAYKVFSLDPTRLLITFGASTTIQDKIHGNVAL 176
L+ G T IQD + G+ AL
Sbjct: 149 -------------LVKDG-DTDIQDLLRGDAAL 167
Score = 52.0 bits (123), Expect = 9e-07, Method: Composition-based stats.
Identities = 30/84 (35%), Positives = 46/84 (54%), Gaps = 3/84 (3%)
Query: 24 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDL-QATPLHWATRQG 82
++ G DV+ D + LH A E+ + + GA+V+ DL + TPLH A +G
Sbjct: 64 LQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNV--ADLWKFTPLHEAAAKG 121
Query: 83 HLDSVVLLIQHGADPTLMDSEGST 106
+ LL+QHGADPT + +G+T
Sbjct: 122 KYEICKLLLQHGADPTKKNRDGNT 145
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 60.1 bits (144), Expect = 3e-09, Method: Composition-based stats.
Identities = 52/153 (33%), Positives = 72/153 (47%), Gaps = 22/153 (14%)
Query: 28 QDVNEPDSE--TVTLLHWAAINNRIEIMKYFISQGAIVDA--IGGDLQATPLHWATRQGH 83
Q VN D E T LH+AA NR+ +++Y + GA V A GG PLH A GH
Sbjct: 31 QSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGG---LVPLHNACSYGH 87
Query: 84 LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMW 143
+ LL++HGA + D T +H+AA G I L+ G + ++R+G T L
Sbjct: 88 YEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLD- 146
Query: 144 SAYKVFSLDPTRLLITFGASTTIQDKIHGNVAL 176
L+ G T IQD + G+ AL
Sbjct: 147 -------------LVKDG-DTDIQDLLRGDAAL 165
Score = 52.0 bits (123), Expect = 9e-07, Method: Composition-based stats.
Identities = 30/84 (35%), Positives = 46/84 (54%), Gaps = 3/84 (3%)
Query: 24 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDL-QATPLHWATRQG 82
++ G DV+ D + LH A E+ + + GA+V+ DL + TPLH A +G
Sbjct: 62 LQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNV--ADLWKFTPLHEAAAKG 119
Query: 83 HLDSVVLLIQHGADPTLMDSEGST 106
+ LL+QHGADPT + +G+T
Sbjct: 120 KYEICKLLLQHGADPTKKNRDGNT 143
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 60.1 bits (144), Expect = 3e-09, Method: Composition-based stats.
Identities = 52/153 (33%), Positives = 72/153 (47%), Gaps = 22/153 (14%)
Query: 28 QDVNEPDSE--TVTLLHWAAINNRIEIMKYFISQGAIVDA--IGGDLQATPLHWATRQGH 83
Q VN D E T LH+AA NR+ +++Y + GA V A GG PLH A GH
Sbjct: 35 QSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGG---LVPLHNACSYGH 91
Query: 84 LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMW 143
+ LL++HGA + D T +H+AA G I L+ G + ++R+G T L
Sbjct: 92 YEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLD- 150
Query: 144 SAYKVFSLDPTRLLITFGASTTIQDKIHGNVAL 176
L+ G T IQD + G+ AL
Sbjct: 151 -------------LVKDG-DTDIQDLLRGDAAL 169
Score = 52.0 bits (123), Expect = 9e-07, Method: Composition-based stats.
Identities = 30/84 (35%), Positives = 46/84 (54%), Gaps = 3/84 (3%)
Query: 24 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDL-QATPLHWATRQG 82
++ G DV+ D + LH A E+ + + GA+V+ DL + TPLH A +G
Sbjct: 66 LQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNV--ADLWKFTPLHEAAAKG 123
Query: 83 HLDSVVLLIQHGADPTLMDSEGST 106
+ LL+QHGADPT + +G+T
Sbjct: 124 KYEICKLLLQHGADPTKKNRDGNT 147
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 59/111 (53%), Gaps = 3/111 (2%)
Query: 28 QDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIG-GDLQATPLHWATRQGHLDS 86
D+N+ D + LHWA R +++ I +GA ++ + GD TPLH A GH D
Sbjct: 30 NDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGD--DTPLHLAASHGHRDI 87
Query: 87 VVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNG 137
V L+Q+ AD ++ G+ +H A +G ++ LVA G V++ ++ G
Sbjct: 88 VQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYG 138
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 41/80 (51%)
Query: 67 GGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAK 126
G D +PLHWA R+G V +LI GA +M+ T +H AA GH IV L+
Sbjct: 35 GDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQY 94
Query: 127 GINVNLQDRNGMTALMWSAY 146
++N + +G L ++ +
Sbjct: 95 KADINAVNEHGNVPLHYACF 114
>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d
Length = 156
Score = 59.3 bits (142), Expect = 6e-09, Method: Composition-based stats.
Identities = 28/69 (40%), Positives = 46/69 (66%), Gaps = 1/69 (1%)
Query: 73 TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 132
+P+H A R G LD++ +L++HGAD + D G+ IH A Q GHT +V++L A+ +++
Sbjct: 70 SPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAES-DLHR 128
Query: 133 QDRNGMTAL 141
+D G+T L
Sbjct: 129 RDARGLTPL 137
Score = 52.0 bits (123), Expect = 8e-07, Method: Composition-based stats.
Identities = 37/123 (30%), Positives = 63/123 (51%), Gaps = 4/123 (3%)
Query: 89 LLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKV 148
LL + P ++ G T + Q FG T I L+ +G + N+QD +G + + +A
Sbjct: 21 LLHRELVHPDALNRFGKTAL-QVMMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTG 79
Query: 149 FSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTP 208
F LD ++L+ GA + D G + +H A+ + H A+ + ++ S L +A+GLTP
Sbjct: 80 F-LDTLKVLVEHGADVNVPDGT-GALPIHLAV-QEGHTAVVSFLAAESDLHRRDARGLTP 136
Query: 209 FML 211
L
Sbjct: 137 LEL 139
Score = 29.6 bits (65), Expect = 5.0, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 6/72 (8%)
Query: 24 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAI--VDAIGGDLQATPLHWATRQ 81
VE G DVN PD +H A ++ + ++ + DA G TPL A ++
Sbjct: 88 VEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAESDLHRRDARG----LTPLELALQR 143
Query: 82 GHLDSVVLLIQH 93
G D V +L H
Sbjct: 144 GAQDLVDILQGH 155
>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|D Chain D, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
Length = 166
Score = 59.3 bits (142), Expect = 6e-09, Method: Composition-based stats.
Identities = 28/69 (40%), Positives = 46/69 (66%), Gaps = 1/69 (1%)
Query: 73 TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 132
+P+H A R G LD++ +L++HGAD + D G+ IH A Q GHT +V++L A+ +++
Sbjct: 76 SPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAES-DLHR 134
Query: 133 QDRNGMTAL 141
+D G+T L
Sbjct: 135 RDARGLTPL 143
Score = 52.0 bits (123), Expect = 8e-07, Method: Composition-based stats.
Identities = 37/123 (30%), Positives = 63/123 (51%), Gaps = 4/123 (3%)
Query: 89 LLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKV 148
LL + P ++ G T + Q FG T I L+ +G + N+QD +G + + +A
Sbjct: 27 LLHRELVHPDALNRFGKTAL-QVMMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTG 85
Query: 149 FSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTP 208
F LD ++L+ GA + D G + +H A+ + H A+ + ++ S L +A+GLTP
Sbjct: 86 F-LDTLKVLVEHGADVNVPDGT-GALPIHLAV-QEGHTAVVSFLAAESDLHRRDARGLTP 142
Query: 209 FML 211
L
Sbjct: 143 LEL 145
Score = 30.8 bits (68), Expect = 2.2, Method: Composition-based stats.
Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 6/76 (7%)
Query: 24 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAI--VDAIGGDLQATPLHWATRQ 81
VE G DVN PD +H A ++ + ++ + DA G TPL A ++
Sbjct: 94 VEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAESDLHRRDARG----LTPLELALQR 149
Query: 82 GHLDSVVLLIQHGADP 97
G D V +L H P
Sbjct: 150 GAQDLVDILQGHMVAP 165
>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures
Length = 168
Score = 59.3 bits (142), Expect = 6e-09, Method: Composition-based stats.
Identities = 33/89 (37%), Positives = 55/89 (61%), Gaps = 8/89 (8%)
Query: 56 FISQGA---IVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 112
+ QGA + DA G +P+H A R G LD++ +L++HGAD +DS GS IH A
Sbjct: 62 LLKQGASPNVQDASG----TSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAI 117
Query: 113 QFGHTRIVAYLVAKGINVNLQDRNGMTAL 141
+ GH+ +V++L + +++ +D +G+T L
Sbjct: 118 REGHSSVVSFLAPES-DLHHRDASGLTPL 145
Score = 46.2 bits (108), Expect = 4e-05, Method: Composition-based stats.
Identities = 35/126 (27%), Positives = 62/126 (49%), Gaps = 4/126 (3%)
Query: 89 LLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKV 148
LL + P ++ G T + Q FG + L+ +G + N+QD +G + + +A
Sbjct: 29 LLHRELVHPDALNRFGKTAL-QVMMFGSPAVALELLKQGASPNVQDASGTSPVHDAARTG 87
Query: 149 FSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTP 208
F LD ++L+ GA D G++ +H AI + H ++ + ++ S L +A GLTP
Sbjct: 88 F-LDTLKVLVEHGADVNALDST-GSLPIHLAI-REGHSSVVSFLAPESDLHHRDASGLTP 144
Query: 209 FMLLEE 214
L +
Sbjct: 145 LELARQ 150
>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX
Length = 166
Score = 59.3 bits (142), Expect = 6e-09, Method: Composition-based stats.
Identities = 33/89 (37%), Positives = 55/89 (61%), Gaps = 8/89 (8%)
Query: 56 FISQGA---IVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 112
+ QGA + DA G +P+H A R G LD++ +L++HGAD +DS GS IH A
Sbjct: 60 LLKQGASPNVQDASG----TSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAI 115
Query: 113 QFGHTRIVAYLVAKGINVNLQDRNGMTAL 141
+ GH+ +V++L + +++ +D +G+T L
Sbjct: 116 REGHSSVVSFLAPES-DLHHRDASGLTPL 143
Score = 46.2 bits (108), Expect = 4e-05, Method: Composition-based stats.
Identities = 35/126 (27%), Positives = 62/126 (49%), Gaps = 4/126 (3%)
Query: 89 LLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKV 148
LL + P ++ G T + Q FG + L+ +G + N+QD +G + + +A
Sbjct: 27 LLHRELVHPDALNRFGKTAL-QVMMFGSPAVALELLKQGASPNVQDASGTSPVHDAARTG 85
Query: 149 FSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTP 208
F LD ++L+ GA D G++ +H AI + H ++ + ++ S L +A GLTP
Sbjct: 86 F-LDTLKVLVEHGADVNALDST-GSLPIHLAI-REGHSSVVSFLAPESDLHHRDASGLTP 142
Query: 209 FMLLEE 214
L +
Sbjct: 143 LELARQ 148
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 58.9 bits (141), Expect = 7e-09, Method: Composition-based stats.
Identities = 35/86 (40%), Positives = 47/86 (54%), Gaps = 6/86 (6%)
Query: 62 IVDAIGGDLQA------TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFG 115
I+ A G D+ A TPLH A GHL+ V +L+++GAD + G T +H AA
Sbjct: 32 ILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTGRTPLHLAAWAD 91
Query: 116 HTRIVAYLVAKGINVNLQDRNGMTAL 141
H IV L+ G +VN QD+ G TA
Sbjct: 92 HLEIVEVLLKHGADVNAQDKFGKTAF 117
Score = 54.7 bits (130), Expect = 1e-07, Method: Composition-based stats.
Identities = 33/80 (41%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 27 GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDS 86
G DVN D T LH AA+ +EI++ + GA V+A G + TPLH A HL+
Sbjct: 37 GADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATG-NTGRTPLHLAAWADHLEI 95
Query: 87 VVLLIQHGADPTLMDSEGST 106
V +L++HGAD D G T
Sbjct: 96 VEVLLKHGADVNAQDKFGKT 115
Score = 54.3 bits (129), Expect = 2e-07, Method: Composition-based stats.
Identities = 38/103 (36%), Positives = 48/103 (46%), Gaps = 2/103 (1%)
Query: 67 GGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAK 126
G DL L A R G D V +L +GAD D G T +H AA GH IV L+
Sbjct: 11 GSDLGKKLLE-AARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKN 69
Query: 127 GINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDK 169
G +VN G T L +A+ L+ +L+ GA QDK
Sbjct: 70 GADVNATGNTGRTPLHLAAW-ADHLEIVEVLLKHGADVNAQDK 111
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 58.5 bits (140), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 72/279 (25%), Positives = 120/279 (43%), Gaps = 56/279 (20%)
Query: 13 FELTKVFVGKC-----------VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGA 61
F+ VF+ C +E G D+N + + +T LH A I++ ++++K+ + GA
Sbjct: 38 FDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGA 97
Query: 62 IVDAIGGDLQA-TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIH----------- 109
++ D + PLH A G+LD LI GA ++SEG T +
Sbjct: 98 NINQP--DNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELL 155
Query: 110 -----------QAAQFGHTRIV-----AYLVAKGINVNLQDRNGMTALMWSAYKVFSLDP 153
+AA+ RI+ +L + IN ++G TAL +A K ++ +
Sbjct: 156 QNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYT-EV 214
Query: 154 TRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLE 213
+LLI I+D G LH A + A LV + +E N G T F + +
Sbjct: 215 LKLLIQARYDVNIKD-YDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVAD 273
Query: 214 ENIGAPWLGKATVDKITELKDHYNTQQNIIHRFSKSKTT 252
E+I LG + EL+ +QN++H + K +
Sbjct: 274 EDI----LG-----YLEELQ----KKQNLLHSEKREKKS 299
>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
pdb|3V31|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 167
Score = 58.5 bits (140), Expect = 9e-09, Method: Composition-based stats.
Identities = 33/95 (34%), Positives = 52/95 (54%), Gaps = 1/95 (1%)
Query: 73 TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 132
TPL WA G + V L+Q+GADP L+ + + A G+T IV L+ G++VN
Sbjct: 38 TPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNE 97
Query: 133 QDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQ 167
D NG T L+++ + + ++L+ GA TI+
Sbjct: 98 YDWNGGTPLLYAVHGN-HVKCVKMLLESGADPTIE 131
Score = 49.3 bits (116), Expect = 6e-06, Method: Composition-based stats.
Identities = 30/124 (24%), Positives = 58/124 (46%), Gaps = 1/124 (0%)
Query: 18 VFVGKCVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHW 77
+++ +E +N D E T L WAA + +I ++++ + GA +G ++ L
Sbjct: 17 LYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESA-LSL 75
Query: 78 ATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNG 137
A +G+ D V +L+ G D D G T + A H + V L+ G + ++ +G
Sbjct: 76 ACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSG 135
Query: 138 MTAL 141
++
Sbjct: 136 YNSM 139
>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 183
Score = 58.5 bits (140), Expect = 9e-09, Method: Composition-based stats.
Identities = 33/95 (34%), Positives = 52/95 (54%), Gaps = 1/95 (1%)
Query: 73 TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 132
TPL WA G + V L+Q+GADP L+ + + A G+T IV L+ G++VN
Sbjct: 54 TPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNE 113
Query: 133 QDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQ 167
D NG T L+++ + + ++L+ GA TI+
Sbjct: 114 YDWNGGTPLLYAVHGN-HVKCVKMLLESGADPTIE 147
Score = 49.3 bits (116), Expect = 6e-06, Method: Composition-based stats.
Identities = 30/124 (24%), Positives = 58/124 (46%), Gaps = 1/124 (0%)
Query: 18 VFVGKCVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHW 77
+++ +E +N D E T L WAA + +I ++++ + GA +G ++ L
Sbjct: 33 LYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESA-LSL 91
Query: 78 ATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNG 137
A +G+ D V +L+ G D D G T + A H + V L+ G + ++ +G
Sbjct: 92 ACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSG 151
Query: 138 MTAL 141
++
Sbjct: 152 YNSM 155
>pdb|3SO8|A Chain A, Crystal Structure Of Ankra
Length = 162
Score = 58.5 bits (140), Expect = 9e-09, Method: Composition-based stats.
Identities = 33/95 (34%), Positives = 52/95 (54%), Gaps = 1/95 (1%)
Query: 73 TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 132
TPL WA G + V L+Q+GADP L+ + + A G+T IV L+ G++VN
Sbjct: 36 TPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNE 95
Query: 133 QDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQ 167
D NG T L+++ + + ++L+ GA TI+
Sbjct: 96 YDWNGGTPLLYAVHGN-HVKCVKMLLESGADPTIE 129
Score = 49.3 bits (116), Expect = 6e-06, Method: Composition-based stats.
Identities = 30/124 (24%), Positives = 58/124 (46%), Gaps = 1/124 (0%)
Query: 18 VFVGKCVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHW 77
+++ +E +N D E T L WAA + +I ++++ + GA +G ++ L
Sbjct: 15 LYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESA-LSL 73
Query: 78 ATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNG 137
A +G+ D V +L+ G D D G T + A H + V L+ G + ++ +G
Sbjct: 74 ACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSG 133
Query: 138 MTAL 141
++
Sbjct: 134 YNSM 137
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 59/222 (26%), Positives = 90/222 (40%), Gaps = 46/222 (20%)
Query: 36 ETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGA 95
E LL A N +++++ + GA V+ + TPLH A + D V LL++HGA
Sbjct: 24 EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGA 83
Query: 96 DPTLMDSEGS---------------------------------TCIHQAAQFGHTRIVAY 122
DP L G+ T +AA +G + + +
Sbjct: 84 DPVLRKKNGATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKF 143
Query: 123 LVAKGINVNL-------QDR---NGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHG 172
L +G NVNL Q+R G TALM +A K LL GA D +
Sbjct: 144 LYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGR 203
Query: 173 NVALHWAIYAKNH--VAIT-TLVSHTSSLEIPNAQGLTPFML 211
N +H + + + AIT L+ H + + + +G TP +L
Sbjct: 204 NALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLIL 245
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 50/204 (24%), Positives = 86/204 (42%), Gaps = 36/204 (17%)
Query: 14 ELTKVFVGKCVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQAT 73
+L K+F+ K G DVNE D T AA+ +++ +K+ +GA V+
Sbjct: 106 KLLKLFLSK----GADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVN--------- 152
Query: 74 PLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAK-GINVNL 132
L T++ D + G+T + AA+ GH ++ L+ + G +VN
Sbjct: 153 -LRRKTKE--------------DQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNA 197
Query: 133 QDRNGMTALMWSAYKVFSLDP---TRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT 189
D G AL+ + D T LL+ GA ++ + G L A+ K H+ +
Sbjct: 198 CDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGE-RGKTPLILAVE-KKHLGLV 255
Query: 190 TLVSHTSSLEI--PNAQGLTPFML 211
+ +EI ++ G T +L
Sbjct: 256 QRLLEQEHIEINDTDSDGKTALLL 279
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 74/164 (45%), Gaps = 12/164 (7%)
Query: 38 VTLLHWAAINNRIEIMKYFISQ-GAIVDAIGGDLQATPLH--WATRQGHLDSVV-LLIQH 93
T L AA +E++K + + GA V+A + +H ++ ++++ LL+ H
Sbjct: 169 ATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDH 228
Query: 94 GADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKG-INVNLQDRNGMTALMWSAYKVFSLD 152
GAD + G T + A + H +V L+ + I +N D +G TAL+ A ++
Sbjct: 229 GADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLL-AVELKLKK 287
Query: 153 PTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTS 196
LL GAST D + A +H + L+SH +
Sbjct: 288 IAELLCKRGASTDCGDLV------MTARRNYDHSLVKVLLSHGA 325
>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank
Length = 172
Score = 57.4 bits (137), Expect = 2e-08, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 47/74 (63%)
Query: 73 TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 132
TPL WA+ G +++V L++ GADP ++ E + + A+ G+T IV L+ + +++N+
Sbjct: 38 TPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINI 97
Query: 133 QDRNGMTALMWSAY 146
D NG T L+++ +
Sbjct: 98 YDWNGGTPLLYAVH 111
Score = 50.4 bits (119), Expect = 2e-06, Method: Composition-based stats.
Identities = 31/112 (27%), Positives = 55/112 (49%), Gaps = 1/112 (0%)
Query: 30 VNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVL 89
VN+PD T L WA+ IE +++ + GA + + ++ L A+ G+ D V L
Sbjct: 29 VNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESA-LSLASTGGYTDIVGL 87
Query: 90 LIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTAL 141
L++ D + D G T + A H + V L+A+G ++ + +G T +
Sbjct: 88 LLERDVDINIYDWNGGTPLLYAVHGNHVKCVEALLARGADLTTEADSGYTPM 139
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 58/218 (26%), Positives = 89/218 (40%), Gaps = 46/218 (21%)
Query: 40 LLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTL 99
LL A N +++++ + GA V+ + TPLH A + D V LL++HGADP L
Sbjct: 8 LLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVL 67
Query: 100 MDSEGS---------------------------------TCIHQAAQFGHTRIVAYLVAK 126
G+ T +AA +G + + +L +
Sbjct: 68 RKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKR 127
Query: 127 GINVNL-------QDR---NGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVAL 176
G NVNL Q+R G TALM +A K LL GA D + N +
Sbjct: 128 GANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALI 187
Query: 177 HWAIYAKNH--VAIT-TLVSHTSSLEIPNAQGLTPFML 211
H + + + AIT L+ H + + + +G TP +L
Sbjct: 188 HALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLIL 225
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 50/204 (24%), Positives = 86/204 (42%), Gaps = 36/204 (17%)
Query: 14 ELTKVFVGKCVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQAT 73
+L K+F+ K G DVNE D T AA+ +++ +K+ +GA V+
Sbjct: 86 KLLKLFLSK----GADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVN--------- 132
Query: 74 PLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAK-GINVNL 132
L T++ D + G+T + AA+ GH ++ L+ + G +VN
Sbjct: 133 -LRRKTKE--------------DQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNA 177
Query: 133 QDRNGMTALMWSAYKVFSLDP---TRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT 189
D G AL+ + D T LL+ GA ++ + G L A+ K H+ +
Sbjct: 178 CDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGE-RGKTPLILAVE-KKHLGLV 235
Query: 190 TLVSHTSSLEI--PNAQGLTPFML 211
+ +EI ++ G T +L
Sbjct: 236 QRLLEQEHIEINDTDSDGKTALLL 259
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 64/136 (47%), Gaps = 6/136 (4%)
Query: 38 VTLLHWAAINNRIEIMKYFISQ-GAIVDAIGGDLQATPLH--WATRQGHLDSVV-LLIQH 93
T L AA +E++K + + GA V+A + +H ++ ++++ LL+ H
Sbjct: 149 ATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDH 208
Query: 94 GADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKG-INVNLQDRNGMTALMWSAYKVFSLD 152
GAD + G T + A + H +V L+ + I +N D +G TAL+ A ++
Sbjct: 209 GADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLL-AVELKLKK 267
Query: 153 PTRLLITFGASTTIQD 168
LL GAST D
Sbjct: 268 IAELLCKRGASTDCGD 283
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 57.0 bits (136), Expect = 3e-08, Method: Composition-based stats.
Identities = 34/100 (34%), Positives = 47/100 (47%), Gaps = 1/100 (1%)
Query: 70 LQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGIN 129
L +PLH A + GH + +L++ G T +H AA GH IV L+ G +
Sbjct: 33 LGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGAD 92
Query: 130 VNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDK 169
VN +D MTAL W+ + LLI +GA Q K
Sbjct: 93 VNAKDMLKMTALHWATEHNHQ-EVVELLIKYGADVHTQSK 131
Score = 52.4 bits (124), Expect = 6e-07, Method: Composition-based stats.
Identities = 32/101 (31%), Positives = 47/101 (46%), Gaps = 1/101 (0%)
Query: 41 LHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLM 100
LH AA + + G DA + TPLH A +GH + V +L++HGAD
Sbjct: 38 LHLAAQYGHFSTTEVLLRAGVSRDA-RTKVDRTPLHMAASEGHANIVEVLLKHGADVNAK 96
Query: 101 DSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTAL 141
D T +H A + H +V L+ G +V+ Q + TA
Sbjct: 97 DMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAF 137
Score = 45.8 bits (107), Expect = 7e-05, Method: Composition-based stats.
Identities = 34/115 (29%), Positives = 57/115 (49%), Gaps = 4/115 (3%)
Query: 78 ATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNG 137
A R G D V +L+ +GA P D G++ +H AAQ+GH L+ G++ + + +
Sbjct: 9 AARAGQDDEVRILMANGA-PFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVD 67
Query: 138 MTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLV 192
T L +A + + + +L+ GA +D + ALHWA NH + L+
Sbjct: 68 RTPLHMAASEGHA-NIVEVLLKHGADVNAKDMLK-MTALHWAT-EHNHQEVVELL 119
Score = 33.5 bits (75), Expect = 0.30, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 21/37 (56%)
Query: 27 GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIV 63
G DVN D +T LHWA +N E+++ I GA V
Sbjct: 90 GADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADV 126
>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Rfxank
Length = 172
Score = 56.6 bits (135), Expect = 3e-08, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 46/72 (63%)
Query: 73 TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 132
TPL WA+ G +++V L++ GADP ++ E + + A+ G+T IV L+ + +++N+
Sbjct: 38 TPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINI 97
Query: 133 QDRNGMTALMWS 144
D NG T L+++
Sbjct: 98 YDWNGGTPLLYA 109
Score = 50.8 bits (120), Expect = 2e-06, Method: Composition-based stats.
Identities = 31/112 (27%), Positives = 56/112 (50%), Gaps = 1/112 (0%)
Query: 30 VNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVL 89
VN+PD T L WA+ IE +++ + GA + + ++ L A+ G+ D V L
Sbjct: 29 VNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESA-LSLASTGGYTDIVGL 87
Query: 90 LIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTAL 141
L++ D + D G T + A + H + V L+A+G ++ + +G T +
Sbjct: 88 LLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPM 139
Score = 29.6 bits (65), Expect = 4.9, Method: Composition-based stats.
Identities = 23/66 (34%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Query: 105 STCIHQAAQFGHTRIVAYLVAKGIN-VNLQDRNGMTALMWSAYKVFSLDPTRLLITFGAS 163
S IHQ A G + + KG N VN D G T L+W A ++ R L+ +GA
Sbjct: 3 SLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIW-ASAFGEIETVRFLLEWGAD 61
Query: 164 TTIQDK 169
I K
Sbjct: 62 PHILAK 67
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 55.8 bits (133), Expect = 6e-08, Method: Composition-based stats.
Identities = 32/76 (42%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 66 IGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVA 125
+G DL L A R G D V +L+ +GAD D GST +H AA+ GH +V L+
Sbjct: 2 MGSDLGKKLLE-AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLE 60
Query: 126 KGINVNLQDRNGMTAL 141
G +VN QD+ G TA
Sbjct: 61 AGADVNAQDKFGKTAF 76
Score = 40.0 bits (92), Expect = 0.004, Method: Composition-based stats.
Identities = 23/51 (45%), Positives = 28/51 (54%), Gaps = 6/51 (11%)
Query: 62 IVDAIGGDLQA------TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGST 106
I+ A G D+ A TPLH A R GHL+ V LL++ GAD D G T
Sbjct: 24 ILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFGKT 74
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 59/196 (30%), Positives = 85/196 (43%), Gaps = 26/196 (13%)
Query: 39 TLLHWAAINNRIEI--------MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLL 90
T+LHW A N+ E K I+ GA V+A D + TPL A V L
Sbjct: 127 TVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAXDCD-ENTPLXLAVLARRRRLVAYL 185
Query: 91 IQHGADPTLMDSEGSTCIHQAA---QFGHTRIVAYLVAKGINVNLQ--DRNGMTALMWSA 145
+ GADPT+ + + +HQAA FG V L + + +++ DRNG TAL A
Sbjct: 186 XKAGADPTIYNKSERSALHQAAANRDFGXX--VYXLNSTKLKGDIEELDRNGXTALXIVA 243
Query: 146 YKV--FSLDPTRLLIT-------FGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHT- 195
+ + +LL+ GA+ +K G ALH+A N + LV
Sbjct: 244 HNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNXPIVKYLVGEKG 303
Query: 196 SSLEIPNAQGLTPFML 211
S+ + + G TP L
Sbjct: 304 SNKDKQDEDGKTPIXL 319
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 56/127 (44%), Gaps = 11/127 (8%)
Query: 29 DVNEPDSETVTLLHWAAIN---NRIEIMKYFISQGAIVDAIGGDLQA-------TPLHWA 78
D+ E D T L A N +++ K + +GA VD G + T LH+A
Sbjct: 227 DIEELDRNGXTALXIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYA 286
Query: 79 TRQGHLDSVVLLI-QHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNG 137
+ + V L+ + G++ D +G T I AAQ G +V YL+ +G +V D
Sbjct: 287 AQVSNXPIVKYLVGEKGSNKDKQDEDGKTPIXLAAQEGRIEVVXYLIQQGASVEAVDATD 346
Query: 138 MTALMWS 144
TA +
Sbjct: 347 HTARQLA 353
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Query: 39 TLLHWAAINNRIEIMKYFISQ-GAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADP 97
T LH+AA + I+KY + + G+ D D + TP+ A ++G ++ V LIQ GA
Sbjct: 281 TALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGK-TPIXLAAQEGRIEVVXYLIQQGASV 339
Query: 98 TLMDSEGSTCIHQAAQFGHTRIV 120
+D+ T A H IV
Sbjct: 340 EAVDATDHTARQLAQANNHHNIV 362
Score = 35.4 bits (80), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 15 LTKVFVGKCVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAI 66
+ K VG E G + ++ D + T + AA RIE++ Y I QGA V+A+
Sbjct: 294 IVKYLVG---EKGSNKDKQDEDGKTPIXLAAQEGRIEVVXYLIQQGASVEAV 342
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 55.5 bits (132), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 53/219 (24%), Positives = 95/219 (43%), Gaps = 20/219 (9%)
Query: 39 TLLHWAAINNR----IEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHG 94
+ LH A I+ +E+++ A ++ +LQ TPLH A + L+ G
Sbjct: 10 SFLHLAIIHEEKALTMEVIRQVKGDLAFLN-FQNNLQQTPLHLAVITNQPEIAEALLGAG 68
Query: 95 ADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQ------DRNGMTALMWSAYKV 148
DP L D G+T +H A + G V L +L + NG T L ++
Sbjct: 69 CDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHG 128
Query: 149 FSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTP 208
+ L LL++ GA Q+ +G ALH A+ +N ++ L+ + + QG +P
Sbjct: 129 Y-LGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSP 187
Query: 209 FML--------LEENIGAPWLGKATVDKITELKDHYNTQ 239
+ L +++ +G L + +E ++ Y+T+
Sbjct: 188 YQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTE 226
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 66/149 (44%), Gaps = 7/149 (4%)
Query: 69 DLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGI 128
+LQ TPLH A + L+ G DP L D G+T +H A + G V L
Sbjct: 40 NLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCT 99
Query: 129 NVNLQ------DRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYA 182
+L + NG T L ++ + L LL++ GA Q+ +G ALH A+
Sbjct: 100 TPHLHSILKATNYNGHTCLHLASIHGY-LGIVELLVSLGADVNAQEPCNGRTALHLAVDL 158
Query: 183 KNHVAITTLVSHTSSLEIPNAQGLTPFML 211
+N ++ L+ + + QG +P+ L
Sbjct: 159 QNPDLVSLLLKCGADVNRVTYQGYSPYQL 187
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 53.9 bits (128), Expect = 2e-07, Method: Composition-based stats.
Identities = 35/96 (36%), Positives = 49/96 (51%), Gaps = 7/96 (7%)
Query: 39 TLLHWAAINNRIEIMKYFISQGA---IVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGA 95
TLLH A+I I ++Y + G+ + D G TPLH A GHL V LL+QH A
Sbjct: 12 TLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGW----TPLHEACNHGHLKVVELLLQHKA 67
Query: 96 DPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVN 131
+ + +H AA+ GH IV L++ G + N
Sbjct: 68 LVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRN 103
Score = 53.1 bits (126), Expect = 4e-07, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Query: 73 TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 132
T LH A+ +G + SV L+Q+G+DP + D G T +H+A GH ++V L+ VN
Sbjct: 12 TLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNT 71
Query: 133 QDRNGMTALMWSAYKVFSLDPTRLLITFGAS 163
+ L A K +D +LL+++GAS
Sbjct: 72 TGYQNDSPLH-DAAKNGHVDIVKLLLSYGAS 101
Score = 30.0 bits (66), Expect = 3.6, Method: Composition-based stats.
Identities = 40/120 (33%), Positives = 54/120 (45%), Gaps = 13/120 (10%)
Query: 94 GADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDP 153
G DP + G T +H A+ G V YL+ G + N++D G T L A L
Sbjct: 1 GIDP-FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLH-EACNHGHLKV 58
Query: 154 TRLLITFGA---STTIQDKIHGNVALHWAIYAKN-HVAITT-LVSHTSSLEIPNAQGLTP 208
LL+ A +T Q+ + LH A AKN HV I L+S+ +S N GL P
Sbjct: 59 VELLLQHKALVNTTGYQN----DSPLHDA--AKNGHVDIVKLLLSYGASRNAVNIFGLRP 112
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 78 ATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNG 137
++ +G D V +I DP+L + EG T +H A GHT IV +LV G+NVN D +G
Sbjct: 44 SSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDG 103
Query: 138 MTALMWSAYKVFSLDPTRLLITFGAS 163
T L +A ++ + L+ GA+
Sbjct: 104 WTPLHCAA-SCNNVQVCKFLVESGAA 128
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 33/66 (50%)
Query: 65 AIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLV 124
++ D T LH A GH + V L+Q G + DS+G T +H AA + ++ +LV
Sbjct: 64 SLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLV 123
Query: 125 AKGINV 130
G V
Sbjct: 124 ESGAAV 129
Score = 32.3 bits (72), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 26/43 (60%)
Query: 24 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAI 66
V+ G +VN DS+ T LH AA N +++ K+ + GA V A+
Sbjct: 90 VQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAM 132
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 78 ATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNG 137
++ +G D V +I DP+L + EG T +H A GHT IV +LV G+NVN D +G
Sbjct: 44 SSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDG 103
Query: 138 MTALMWSAYKVFSLDPTRLLITFGAS 163
T L +A ++ + L+ GA+
Sbjct: 104 WTPLHCAA-SCNNVQVCKFLVESGAA 128
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 33/66 (50%)
Query: 65 AIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLV 124
++ D T LH A GH + V L+Q G + DS+G T +H AA + ++ +LV
Sbjct: 64 SLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLV 123
Query: 125 AKGINV 130
G V
Sbjct: 124 ESGAAV 129
Score = 32.3 bits (72), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 26/43 (60%)
Query: 24 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAI 66
V+ G +VN DS+ T LH AA N +++ K+ + GA V A+
Sbjct: 90 VQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAM 132
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 53.5 bits (127), Expect = 3e-07, Method: Composition-based stats.
Identities = 28/64 (43%), Positives = 37/64 (57%)
Query: 78 ATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNG 137
A R G D V +L+ +GAD D +G T +H AA+ GH IV L+ G +VN QD+ G
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFG 68
Query: 138 MTAL 141
TA
Sbjct: 69 KTAF 72
Score = 40.0 bits (92), Expect = 0.003, Method: Composition-based stats.
Identities = 22/54 (40%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 53 MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGST 106
++ ++ GA V+A D TPLH A R+GHL+ V +L++ GAD D G T
Sbjct: 18 VRILMANGADVNAKDKD-GYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKT 70
Score = 32.0 bits (71), Expect = 1.1, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%)
Query: 27 GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDA 65
G DVN D + T LH AA +EI++ + GA V+A
Sbjct: 25 GADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNA 63
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 53.1 bits (126), Expect = 4e-07, Method: Composition-based stats.
Identities = 31/76 (40%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 66 IGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVA 125
+G DL L A R G D V +L+ +GAD D GST +H AA+ GH +V L+
Sbjct: 20 MGSDLGKKLLE-AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLE 78
Query: 126 KGINVNLQDRNGMTAL 141
G +V QD+ G TA
Sbjct: 79 AGADVXAQDKFGKTAF 94
Score = 39.7 bits (91), Expect = 0.004, Method: Composition-based stats.
Identities = 23/51 (45%), Positives = 28/51 (54%), Gaps = 6/51 (11%)
Query: 62 IVDAIGGDLQA------TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGST 106
I+ A G D+ A TPLH A R GHL+ V LL++ GAD D G T
Sbjct: 42 ILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKT 92
>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein
Length = 201
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 79/158 (50%), Gaps = 12/158 (7%)
Query: 30 VNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVL 89
V+E D+E T L+ A NN IEI K I +GA ++ + + +P +A QG + +
Sbjct: 32 VDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADIN-LQNSISDSPYLYAGAQGRTEILAY 90
Query: 90 LIQHGADPTLMDSE--GSTCIHQAAQFGHTRIVAYLVAKG-INVNLQDRNGMTAL----- 141
+++H A P L G + AA+ GH V L+ G +++ Q+ G TAL
Sbjct: 91 MLKH-ATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVG 149
Query: 142 MWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWA 179
+ +++ D +LL+ GA +I+D G A+ +A
Sbjct: 150 LREGNQLYQ-DIVKLLMENGADQSIKDN-SGRTAMDYA 185
Score = 36.6 bits (83), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 68/149 (45%), Gaps = 18/149 (12%)
Query: 12 EFELTKVFVGKCVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIV----DAIG 67
+ E+ K + + G D+N +S + + +A R EI+ Y + + G
Sbjct: 51 DIEIAKALIDR----GADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYG 106
Query: 68 GDLQATPLHWATRQGHLDSVVLLIQHG-ADPTLMDSEGSTCIHQAAQFG-----HTRIVA 121
G+ L A +GH+D+V LL++ G D + G T + +A + IV
Sbjct: 107 GN----ALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVK 162
Query: 122 YLVAKGINVNLQDRNGMTALMWSAYKVFS 150
L+ G + +++D +G TA+ ++ K ++
Sbjct: 163 LLMENGADQSIKDNSGRTAMDYANQKGYT 191
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Query: 80 RQGHL---DSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLV 124
R+G+ D V LL+++GAD ++ D+ G T + A Q G+T I L
Sbjct: 151 REGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKILA 198
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 54/105 (51%), Gaps = 4/105 (3%)
Query: 39 TLLHWAAIN---NRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGA 95
T LH A + R ++ + + +GA V+ D TPLH A + H D + +L +HGA
Sbjct: 213 TALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFM-TPLHVAAERAHNDVMEVLHKHGA 271
Query: 96 DPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTA 140
+DS G T +H+AA GH + L++ G + ++ G TA
Sbjct: 272 KMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTA 316
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 69/159 (43%), Gaps = 11/159 (6%)
Query: 29 DVNEPDSETV--------TLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATR 80
D+ +P ++ V LL A N ++M A G ++TPLH A
Sbjct: 9 DLADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGR-KSTPLHLAAG 67
Query: 81 QGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTA 140
+ V LL+QHGAD D G +H A +GH + L+ G VN D T
Sbjct: 68 YNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTP 127
Query: 141 LMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWA 179
L +A K ++ LL++ GA T+ + HG A+ A
Sbjct: 128 LHEAASK-NRVEVCSLLLSHGADPTLVN-CHGKSAVDMA 164
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 64/237 (27%), Positives = 99/237 (41%), Gaps = 41/237 (17%)
Query: 9 NWYEFELTKVFV--GKCVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGA---IV 63
++ +E+T++ + G CV N D T LH AA NR+E+ +S GA +V
Sbjct: 100 SYGHYEVTELLLKHGACV------NAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLV 153
Query: 64 DAIGG---DLQATP--------------LHWATRQGHLDSV----VLLIQHGADPTLMDS 102
+ G D+ TP L A R+ L V L I + P +
Sbjct: 154 NCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHE- 212
Query: 103 EGSTCIHQAAQFGHTR---IVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLIT 159
T +H A H + + L+ KG NVN ++++ MT L +A + + D +L
Sbjct: 213 ---TALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHN-DVMEVLHK 268
Query: 160 FGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENI 216
GA D + G ALH A A + L+S+ S I + QG T + E +
Sbjct: 269 HGAKMNALDSL-GQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMGNEAV 324
>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
pdb|3T9K|B Chain B, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
Length = 390
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 55/118 (46%), Gaps = 8/118 (6%)
Query: 32 EPDSETVTLLHWAAINNR-------IEIMKYFISQGAIVDAI-GGDLQATPLHWATRQGH 83
EP SE + LH A+ R + M ++ GA V+ + GG ATPL AT
Sbjct: 188 EPPSEDLGSLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANS 247
Query: 84 LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTAL 141
L + L+Q+GA+ DS G +H A GHT + + +G ++ +D G L
Sbjct: 248 LLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPL 305
Score = 35.4 bits (80), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 42/99 (42%), Gaps = 3/99 (3%)
Query: 27 GQDVN--EPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHL 84
G DVN + T L A N + ++ + GA V+ + PLH AT GH
Sbjct: 223 GADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRG-PLHHATILGHT 281
Query: 85 DSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYL 123
L ++ GAD DSEG + A + + IV L
Sbjct: 282 GLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLL 320
>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
pdb|4F1P|B Chain B, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
Length = 368
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 55/118 (46%), Gaps = 8/118 (6%)
Query: 32 EPDSETVTLLHWAAINNR-------IEIMKYFISQGAIVDAI-GGDLQATPLHWATRQGH 83
EP SE + LH A+ R + M ++ GA V+ + GG ATPL AT
Sbjct: 188 EPPSEDLGSLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANS 247
Query: 84 LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTAL 141
L + L+Q+GA+ DS G +H A GHT + + +G ++ +D G L
Sbjct: 248 LLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPL 305
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 43/102 (42%), Gaps = 9/102 (8%)
Query: 27 GQDVN--EPDSETVTLLHWAAINNRIEIMKYFISQGAIV---DAIGGDLQATPLHWATRQ 81
G DVN + T L A N + ++ + GA V D+ G PLH AT
Sbjct: 223 GADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAG----RGPLHHATIL 278
Query: 82 GHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYL 123
GH L ++ GAD DSEG + A + + IV L
Sbjct: 279 GHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLL 320
>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
pdb|3JUE|B Chain B, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
Length = 368
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 55/118 (46%), Gaps = 8/118 (6%)
Query: 32 EPDSETVTLLHWAAINNR-------IEIMKYFISQGAIVDAI-GGDLQATPLHWATRQGH 83
EP SE + LH A+ R + M ++ GA V+ + GG ATPL AT
Sbjct: 188 EPPSEDLGSLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANS 247
Query: 84 LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTAL 141
L + L+Q+GA+ DS G +H A GHT + + +G ++ +D G L
Sbjct: 248 LLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPL 305
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 42/99 (42%), Gaps = 3/99 (3%)
Query: 27 GQDVN--EPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHL 84
G DVN + T L A N + ++ + GA V+ + PLH AT GH
Sbjct: 223 GADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRG-PLHHATILGHT 281
Query: 85 DSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYL 123
L ++ GAD DSEG + A + + IV L
Sbjct: 282 GLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLL 320
>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain
Length = 232
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 81/181 (44%), Gaps = 36/181 (19%)
Query: 68 GDLQATPLHWATRQGHLDSVVLLIQHGADPTL----MDSE---GSTCIHQAAQFGHTRIV 120
G + T LH A +L++ ++L++ A P L M SE G T +H A + +V
Sbjct: 34 GAMGETALHIAALYDNLEAAMVLME--AAPELVFEPMTSELYEGQTALHIAVINQNVNLV 91
Query: 121 AYLVAKGINVNLQDRN-------------GMTALMWSAYKVFSLDPTRLLITFGASTTIQ 167
L+A+G +V+ + G L ++A V S + RLLI GA Q
Sbjct: 92 RALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAAC-VGSEEIVRLLIEHGADIRAQ 150
Query: 168 DKIHGNVALHWAIYAKNHVAITTLVS---------HTSSLE-IPNAQGLTPFML--LEEN 215
D + GN LH I N + + H SLE +PN QGLTPF L +E N
Sbjct: 151 DSL-GNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGN 209
Query: 216 I 216
I
Sbjct: 210 I 210
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 43/91 (47%), Gaps = 22/91 (24%)
Query: 36 ETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQAT-----------------PLHWA 78
E T LH A IN + +++ +++GA V A +AT PL +A
Sbjct: 74 EGQTALHIAVINQNVNLVRALLARGASVSA-----RATGSVFHYRPHNLIYYGEHPLSFA 128
Query: 79 TRQGHLDSVVLLIQHGADPTLMDSEGSTCIH 109
G + V LLI+HGAD DS G+T +H
Sbjct: 129 ACVGSEEIVRLLIEHGADIRAQDSLGNTVLH 159
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/220 (25%), Positives = 90/220 (40%), Gaps = 18/220 (8%)
Query: 21 GKCVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATR 80
G ++ G+D+ + T +++ ++QGA ++A T LH A R
Sbjct: 13 GGGLDTGEDIENNEDSTA------------QVISDLLAQGAELNATMDKTGETSLHLAAR 60
Query: 81 QGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLV-AKGINVNLQDRNGMT 139
D+ L+ GAD D+ G T +H A + L+ + N+N + +G T
Sbjct: 61 FARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTT 120
Query: 140 ALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLE 199
L+ +A LIT A D G ALHWA N A+ L+ H ++ +
Sbjct: 121 PLILAARLAIE-GMVEDLITADADINAADN-SGKTALHWAAAVNNTEAVNILLMHHANRD 178
Query: 200 IPNAQGLTPFMLLEENIGAPWLGKATVDKIT--ELKDHYN 237
+ + TP L G+ KA +D E+ DH +
Sbjct: 179 AQDDKDETPLFLAARE-GSYEASKALLDNFANREITDHMD 217
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 75 LHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVA-KGINVNLQ 133
+H A R G LD++ L+++ AD + D+EG+ +H AA+ GH R+V +LV NV +
Sbjct: 74 IHDAARAGFLDTLQTLLENQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHR 133
Query: 134 DRNGMTA 140
+ G TA
Sbjct: 134 NHKGDTA 140
Score = 42.7 bits (99), Expect = 6e-04, Method: Composition-based stats.
Identities = 35/120 (29%), Positives = 59/120 (49%), Gaps = 3/120 (2%)
Query: 78 ATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNG 137
A +G L+ + L+Q+ + + G T + Q + G+ I L+ +G N +L+DR G
Sbjct: 12 AAARGDLEQLTSLLQNNVNVNAQNGFGRTAL-QVMKLGNPEIARRLLLRGANPDLKDRTG 70
Query: 138 MTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSS 197
A++ A + LD + L+ A I+D GN+ LH A + + LV HT+S
Sbjct: 71 F-AVIHDAARAGFLDTLQTLLENQADVNIEDN-EGNLPLHLAAKEGHLRVVEFLVKHTAS 128
Score = 38.5 bits (88), Expect = 0.010, Method: Composition-based stats.
Identities = 30/98 (30%), Positives = 43/98 (43%), Gaps = 2/98 (2%)
Query: 90 LIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVF 149
L+ GA+P L D G IH AA+ G + L+ +VN++D G L +A K
Sbjct: 56 LLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLENQADVNIEDNEGNLPLHLAA-KEG 114
Query: 150 SLDPTRLLITFGASTTIQDKIHGNVALHWA-IYAKNHV 186
L L+ AS G+ A A +Y +N V
Sbjct: 115 HLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEV 152
Score = 35.4 bits (80), Expect = 0.089, Method: Composition-based stats.
Identities = 29/110 (26%), Positives = 50/110 (45%), Gaps = 4/110 (3%)
Query: 27 GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDS 86
G + + D ++H AA ++ ++ + A V+ I + PLH A ++GHL
Sbjct: 60 GANPDLKDRTGFAVIHDAARAGFLDTLQTLLENQADVN-IEDNEGNLPLHLAAKEGHLRV 118
Query: 87 VVLLIQHGADPT-LMDSEGSTCIHQAAQFGHTRIVAYLVAKGIN--VNLQ 133
V L++H A + +G T A +G +V+ + A G NLQ
Sbjct: 119 VEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAGGATNLQ 168
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Query: 75 LHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVA-KGINVNLQ 133
+H A R G LD++ L++ AD + D+EG+ +H AA+ GH R+V +LV NV +
Sbjct: 74 IHDAARAGQLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHR 133
Query: 134 DRNGMTA 140
+ G TA
Sbjct: 134 NHKGDTA 140
Score = 47.4 bits (111), Expect = 2e-05, Method: Composition-based stats.
Identities = 36/120 (30%), Positives = 60/120 (50%), Gaps = 3/120 (2%)
Query: 78 ATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNG 137
A +G L+ + L+Q+ + + G T + Q + G+ I L+ +G N +L+DR G
Sbjct: 12 AAARGDLEQLTSLLQNNVNVNAQNGFGRTAL-QVMKLGNPEIARRLLLRGANPDLKDRTG 70
Query: 138 MTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSS 197
A++ A + LD + L+ F A I+D GN+ LH A + + LV HT+S
Sbjct: 71 F-AVIHDAARAGQLDTLQTLLEFQADVNIEDN-EGNLPLHLAAKEGHLRVVEFLVKHTAS 128
Score = 38.1 bits (87), Expect = 0.014, Method: Composition-based stats.
Identities = 30/98 (30%), Positives = 43/98 (43%), Gaps = 2/98 (2%)
Query: 90 LIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVF 149
L+ GA+P L D G IH AA+ G + L+ +VN++D G L +A K
Sbjct: 56 LLLRGANPDLKDRTGFAVIHDAARAGQLDTLQTLLEFQADVNIEDNEGNLPLHLAA-KEG 114
Query: 150 SLDPTRLLITFGASTTIQDKIHGNVALHWA-IYAKNHV 186
L L+ AS G+ A A +Y +N V
Sbjct: 115 HLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEV 152
Score = 35.8 bits (81), Expect = 0.075, Method: Composition-based stats.
Identities = 29/110 (26%), Positives = 51/110 (46%), Gaps = 4/110 (3%)
Query: 27 GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDS 86
G + + D ++H AA +++ ++ + A V+ I + PLH A ++GHL
Sbjct: 60 GANPDLKDRTGFAVIHDAARAGQLDTLQTLLEFQADVN-IEDNEGNLPLHLAAKEGHLRV 118
Query: 87 VVLLIQHGADPT-LMDSEGSTCIHQAAQFGHTRIVAYLVAKGIN--VNLQ 133
V L++H A + +G T A +G +V+ + A G NLQ
Sbjct: 119 VEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAGGATNLQ 168
>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With
V-1
Length = 123
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 77 WATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRN 136
WA + G LD V + G D G +H AA G I+ +L+ KG ++N D++
Sbjct: 13 WALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKH 72
Query: 137 GMTALMWSAYKVFSLDPTRLLITFGASTTIQ 167
+T L+ + Y+ + +LL++ GA T++
Sbjct: 73 HITPLLSAVYE-GHVSCVKLLLSKGADKTVK 102
Score = 47.0 bits (110), Expect = 3e-05, Method: Composition-based stats.
Identities = 29/83 (34%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 24 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 83
V G+DVN LH+AA ++EI+++ + +GA ++A TPL A +GH
Sbjct: 27 VAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKH-HITPLLSAVYEGH 85
Query: 84 LDSVVLLIQHGADPTLMDSEGST 106
+ V LL+ GAD T+ +G T
Sbjct: 86 VSCVKLLLSKGADKTVKGPDGLT 108
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 30/101 (29%), Positives = 50/101 (49%), Gaps = 5/101 (4%)
Query: 43 WAAINNRIEIMKYFISQGAIVDAI--GGDLQATPLHWATRQGHLDSVVLLIQHGADPTLM 100
WA N ++ +K ++++G V+ GG PLH+A G L+ + L+ GAD
Sbjct: 13 WALKNGDLDEVKDYVAKGEDVNRTLEGG---RKPLHYAADCGQLEILEFLLLKGADINAP 69
Query: 101 DSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTAL 141
D T + A GH V L++KG + ++ +G+TA
Sbjct: 70 DKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAF 110
>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures
pdb|2MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, Minimized Average
Structure
pdb|2KXP|C Chain C, Solution Nmr Structure Of V-1 Bound To Capping Protein
(Cp)
Length = 118
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 77 WATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRN 136
WA + G LD V + G D G +H AA G I+ +L+ KG ++N D++
Sbjct: 8 WALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKH 67
Query: 137 GMTALMWSAYKVFSLDPTRLLITFGASTTIQ 167
+T L+ + Y+ + +LL++ GA T++
Sbjct: 68 HITPLLSAVYE-GHVSCVKLLLSKGADKTVK 97
Score = 47.4 bits (111), Expect = 2e-05, Method: Composition-based stats.
Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Query: 24 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 83
V G+DVN LH+AA ++EI+++ + +GA ++A TPL A +GH
Sbjct: 22 VAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKH-HITPLLSAVYEGH 80
Query: 84 LDSVVLLIQHGADPTLMDSEGSTCI 108
+ V LL+ GAD T+ +G T +
Sbjct: 81 VSCVKLLLSKGADKTVKGPDGLTAL 105
Score = 45.8 bits (107), Expect = 6e-05, Method: Composition-based stats.
Identities = 31/101 (30%), Positives = 51/101 (50%), Gaps = 5/101 (4%)
Query: 43 WAAINNRIEIMKYFISQGAIVDAI--GGDLQATPLHWATRQGHLDSVVLLIQHGADPTLM 100
WA N ++ +K ++++G V+ GG PLH+A G L+ + L+ GAD
Sbjct: 8 WALKNGDLDEVKDYVAKGEDVNRTLEGG---RKPLHYAADCGQLEILEFLLLKGADINAP 64
Query: 101 DSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTAL 141
D T + A GH V L++KG + ++ +G+TAL
Sbjct: 65 DKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAL 105
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 58/119 (48%)
Query: 29 DVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVV 88
D+ + + +T LH A E ++ + +GA +DA+ +PL A L V
Sbjct: 108 DLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQ 167
Query: 89 LLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYK 147
LL+QHGA+ GS+ +H A+ G +V LV G + +L++ + T LM + +
Sbjct: 168 LLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSR 226
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 79/195 (40%), Gaps = 19/195 (9%)
Query: 34 DSETVTLLHWAAINNRIEIMKYFIS---QGAIVDAIGGDLQATPLHWATRQGHLDSVVLL 90
D + T LH A + + + ++ QG I +L+ TPLH A V LL
Sbjct: 6 DEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLL 65
Query: 91 IQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLV--AKGINVNLQDRN--GMTALMWSAY 146
+ GA P +D G T H A + + L+ A ++L+ RN G+TAL A
Sbjct: 66 VTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHV-AV 124
Query: 147 KVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSH-----------T 195
+ +LL+ GA D G L A+ + + L+ H +
Sbjct: 125 NTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGS 184
Query: 196 SSLEIPNAQGLTPFM 210
S+L + +GL P +
Sbjct: 185 SALHSASGRGLLPLV 199
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 47.0 bits (110), Expect = 3e-05, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Query: 75 LHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVA-KGINVNLQ 133
+H A R G LD++ L++ AD + D+EG+ +H AA+ GH R+V +LV NV +
Sbjct: 74 IHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHR 133
Query: 134 DRNGMTA 140
+ G TA
Sbjct: 134 NHKGDTA 140
Score = 46.6 bits (109), Expect = 4e-05, Method: Composition-based stats.
Identities = 36/120 (30%), Positives = 60/120 (50%), Gaps = 3/120 (2%)
Query: 78 ATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNG 137
A +G L+ + L+Q+ + + G T + Q + G+ I L+ +G N +L+DR G
Sbjct: 12 AAARGDLEQLTSLLQNNVNVNAQNGFGRTAL-QVMKLGNPEIARRLLLRGANPDLKDRTG 70
Query: 138 MTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSS 197
A++ A + LD + L+ F A I+D GN+ LH A + + LV HT+S
Sbjct: 71 F-AVIHDAARAGFLDTLQTLLEFQADVNIEDN-EGNLPLHLAAKEGHLRVVEFLVKHTAS 128
Score = 37.4 bits (85), Expect = 0.023, Method: Composition-based stats.
Identities = 30/98 (30%), Positives = 43/98 (43%), Gaps = 2/98 (2%)
Query: 90 LIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVF 149
L+ GA+P L D G IH AA+ G + L+ +VN++D G L +A K
Sbjct: 56 LLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAA-KEG 114
Query: 150 SLDPTRLLITFGASTTIQDKIHGNVALHWA-IYAKNHV 186
L L+ AS G+ A A +Y +N V
Sbjct: 115 HLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEV 152
Score = 34.3 bits (77), Expect = 0.21, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 74 PLHWATRQGHLDSVVLLIQHGADPT-LMDSEGSTCIHQAAQFGHTRIVAYLVAKG 127
PLH A ++GHL V L++H A + +G T A +G +V+ + A G
Sbjct: 106 PLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG 160
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 47.0 bits (110), Expect = 3e-05, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Query: 75 LHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVA-KGINVNLQ 133
+H A R G LD++ L++ AD + D+EG+ +H AA+ GH R+V +LV NV +
Sbjct: 74 IHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHR 133
Query: 134 DRNGMTA 140
+ G TA
Sbjct: 134 NHKGDTA 140
Score = 46.6 bits (109), Expect = 4e-05, Method: Composition-based stats.
Identities = 36/120 (30%), Positives = 60/120 (50%), Gaps = 3/120 (2%)
Query: 78 ATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNG 137
A +G L+ + L+Q+ + + G T + Q + G+ I L+ +G N +L+DR G
Sbjct: 12 AAARGDLEQLTSLLQNNVNVNAQNGFGRTAL-QVMKLGNPEIARRLLLRGANPDLKDRTG 70
Query: 138 MTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSS 197
A++ A + LD + L+ F A I+D GN+ LH A + + LV HT+S
Sbjct: 71 -NAVIHDAARAGFLDTLQTLLEFQADVNIEDN-EGNLPLHLAAKEGHLRVVEFLVKHTAS 128
Score = 38.5 bits (88), Expect = 0.010, Method: Composition-based stats.
Identities = 30/98 (30%), Positives = 44/98 (44%), Gaps = 2/98 (2%)
Query: 90 LIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVF 149
L+ GA+P L D G+ IH AA+ G + L+ +VN++D G L +A K
Sbjct: 56 LLLRGANPDLKDRTGNAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAA-KEG 114
Query: 150 SLDPTRLLITFGASTTIQDKIHGNVALHWA-IYAKNHV 186
L L+ AS G+ A A +Y +N V
Sbjct: 115 HLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEV 152
Score = 34.7 bits (78), Expect = 0.15, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Query: 74 PLHWATRQGHLDSVVLLIQHGADPT-LMDSEGSTCIHQAAQFGHTRIVAYLVAKGIN--V 130
PLH A ++GHL V L++H A + +G T A +G +V+ + A G
Sbjct: 106 PLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAGGAT 165
Query: 131 NLQ 133
NLQ
Sbjct: 166 NLQ 168
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 47.0 bits (110), Expect = 3e-05, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Query: 75 LHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVA-KGINVNLQ 133
+H A R G LD++ L++ AD + D+EG+ +H AA+ GH R+V +LV NV +
Sbjct: 74 IHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHR 133
Query: 134 DRNGMTA 140
+ G TA
Sbjct: 134 NHKGDTA 140
Score = 46.6 bits (109), Expect = 4e-05, Method: Composition-based stats.
Identities = 36/120 (30%), Positives = 60/120 (50%), Gaps = 3/120 (2%)
Query: 78 ATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNG 137
A +G L+ + L+Q+ + + G T + Q + G+ I L+ +G N +L+DR G
Sbjct: 12 AAARGDLEQLTSLLQNNVNVNAQNGFGRTAL-QVMKLGNPEIARRLLLRGANPDLKDRTG 70
Query: 138 MTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSS 197
A++ A + LD + L+ F A I+D GN+ LH A + + LV HT+S
Sbjct: 71 F-AVIHDAARAGFLDTLQTLLEFQADVNIEDN-EGNLPLHLAAKEGHLRVVEFLVKHTAS 128
Score = 37.4 bits (85), Expect = 0.023, Method: Composition-based stats.
Identities = 30/98 (30%), Positives = 43/98 (43%), Gaps = 2/98 (2%)
Query: 90 LIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVF 149
L+ GA+P L D G IH AA+ G + L+ +VN++D G L +A K
Sbjct: 56 LLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAA-KEG 114
Query: 150 SLDPTRLLITFGASTTIQDKIHGNVALHWA-IYAKNHV 186
L L+ AS G+ A A +Y +N V
Sbjct: 115 HLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEV 152
Score = 34.7 bits (78), Expect = 0.15, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Query: 74 PLHWATRQGHLDSVVLLIQHGADPT-LMDSEGSTCIHQAAQFGHTRIVAYLVAKGIN--V 130
PLH A ++GHL V L++H A + +G T A +G +V+ + A G
Sbjct: 106 PLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAGGAT 165
Query: 131 NLQ 133
NLQ
Sbjct: 166 NLQ 168
>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats
Length = 276
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 73 TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVA-KGINVN 131
T L A G +D V L+ AD + D +GST + A + GH I L+A +++
Sbjct: 185 TALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDIS 244
Query: 132 LQDRNGMTALM 142
L DR+G TALM
Sbjct: 245 LTDRDGSTALM 255
Score = 37.4 bits (85), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 53/120 (44%), Gaps = 5/120 (4%)
Query: 30 VNEPDSETVTLLHWAAINNRIEIMKYFISQGAI-VD----AIGGDLQATPLHWATRQGHL 84
VN DS T LH++ + +++ + G VD A + T L Q +
Sbjct: 104 VNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDI 163
Query: 85 DSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWS 144
++V+ L + G G T + A G +V L+A +VN+QD +G TALM +
Sbjct: 164 ETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCA 223
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 58/111 (52%), Gaps = 3/111 (2%)
Query: 73 TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAK-GINVN 131
PLH A ++G+L + + + +D GST ++ A GH IV L + I +N
Sbjct: 75 NPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEXLFTQPNIELN 134
Query: 132 LQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYA 182
Q++ G TAL +A+K ++ D +LL+ GA T +++ I +A A A
Sbjct: 135 QQNKLGDTALHAAAWKGYA-DIVQLLLAKGARTDLRN-IEKKLAFDXATNA 183
Score = 37.0 bits (84), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 72 ATPLHWATRQGHLDSV-VLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINV 130
+T L+WA GH D V L Q + + G T +H AA G+ IV L+AKG
Sbjct: 107 STALYWACHGGHKDIVEXLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGART 166
Query: 131 NLQD 134
+L++
Sbjct: 167 DLRN 170
Score = 32.0 bits (71), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 37/82 (45%)
Query: 22 KCVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQ 81
+C++ VN D T L+WA +I++ +Q I L T LH A +
Sbjct: 91 ECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEXLFTQPNIELNQQNKLGDTALHAAAWK 150
Query: 82 GHLDSVVLLIQHGADPTLMDSE 103
G+ D V LL+ GA L + E
Sbjct: 151 GYADIVQLLLAKGARTDLRNIE 172
>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
pdb|3ZKJ|D Chain D, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
Length = 261
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 54/124 (43%), Gaps = 35/124 (28%)
Query: 41 LHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHL---------------- 84
+H AAI+ ++ ISQG V+ I D +PLH A GHL
Sbjct: 7 MHEAAIHGHQLSLRNLISQGWAVNIITAD-HVSPLHEACLGGHLSCVKILLKHGAQVNGV 65
Query: 85 -----------------DSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKG 127
D V LL+QHGA +S+ ++ IH+AA+ GH V L+A G
Sbjct: 66 TADWHTPLFNACVSGSWDCVNLLLQHGAS-VQPESDLASPIHEAARRGHVECVNSLIAYG 124
Query: 128 INVN 131
N++
Sbjct: 125 GNID 128
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/176 (23%), Positives = 71/176 (40%), Gaps = 33/176 (18%)
Query: 24 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGD-------------- 69
+ G VN ++ V+ LH A + + +K + GA V+ + D
Sbjct: 23 ISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSW 82
Query: 70 ------LQ-----------ATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 112
LQ A+P+H A R+GH++ V LI +G + S T ++ A
Sbjct: 83 DCVNLLLQHGASVQPESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLAC 142
Query: 113 QFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQD 168
+ V L+ G +VN G + + + + S + LL+ FGA T ++
Sbjct: 143 ENQQRACVKKLLESGADVN--QGKGQDSPLHAVARTASEELACLLMDFGADTQAKN 196
Score = 37.0 bits (84), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 81/188 (43%), Gaps = 19/188 (10%)
Query: 73 TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 132
+P+H A GH S+ LI G ++ ++ + +H+A GH V L+ G V
Sbjct: 5 SPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQV-- 62
Query: 133 QDRNGMTA----LMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAI 188
NG+TA +++A S D LL+ GAS + + + H A + +
Sbjct: 63 ---NGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPI--HEAARRGHVECV 117
Query: 189 TTLVSHTSSLEIPNAQGLTPFMLLEENIGAPWLGKATVDKITELKDHYNT---QQNIIHR 245
+L+++ +++ + TP L EN +A V K+ E N Q + +H
Sbjct: 118 NSLIAYGGNIDHKISHLGTPLYLACEN-----QQRACVKKLLESGADVNQGKGQDSPLHA 172
Query: 246 FSKSKTTR 253
+++ +
Sbjct: 173 VARTASEE 180
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
Query: 27 GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDS 86
G +++ S T L+ A N + +K + GA V+ G Q +PLH R +
Sbjct: 124 GGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQ--GKGQDSPLHAVARTASEEL 181
Query: 87 VVLLIQHGADPTLMDSEG 104
LL+ GAD ++EG
Sbjct: 182 ACLLMDFGADTQAKNAEG 199
>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9
(Hasb9-2), An Ankyrin Repeat Protein
Length = 285
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 54/124 (43%), Gaps = 35/124 (28%)
Query: 41 LHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHL---------------- 84
+H AAI+ ++ ISQG V+ I D +PLH A GHL
Sbjct: 63 MHEAAIHGHQLSLRNLISQGWAVNIITAD-HVSPLHEACLGGHLSCVKILLKHGAQVNGV 121
Query: 85 -----------------DSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKG 127
D V LL+QHGA +S+ ++ IH+AA+ GH V L+A G
Sbjct: 122 TADWHTPLFNACVSGSWDCVNLLLQHGAS-VQPESDLASPIHEAARRGHVECVNSLIAYG 180
Query: 128 INVN 131
N++
Sbjct: 181 GNID 184
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 38/165 (23%), Positives = 67/165 (40%), Gaps = 33/165 (20%)
Query: 35 SETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGD--------------------LQ--- 71
++ V+ LH A + + +K + GA V+ + D LQ
Sbjct: 90 ADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGA 149
Query: 72 --------ATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYL 123
A+P+H A R+GH++ V LI +G + S T ++ A + V L
Sbjct: 150 SVQPESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKL 209
Query: 124 VAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQD 168
+ G +VN G + + + + S + LL+ FGA T ++
Sbjct: 210 LESGADVN--QGKGQDSPLHAVVRTASEELACLLMDFGADTQAKN 252
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 66/147 (44%), Gaps = 11/147 (7%)
Query: 73 TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 132
+P+H A GH S+ LI G ++ ++ + +H+A GH V L+ G V
Sbjct: 61 SPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQV-- 118
Query: 133 QDRNGMTA----LMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAI 188
NG+TA +++A S D LL+ GAS + + +H A + +
Sbjct: 119 ---NGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDL--ASPIHEAARRGHVECV 173
Query: 189 TTLVSHTSSLEIPNAQGLTPFMLLEEN 215
+L+++ +++ + TP L EN
Sbjct: 174 NSLIAYGGNIDHKISHLGTPLYLACEN 200
Score = 32.3 bits (72), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
Query: 27 GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDS 86
G +++ S T L+ A N + +K + GA V+ G Q +PLH R +
Sbjct: 180 GGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQ--GKGQDSPLHAVVRTASEEL 237
Query: 87 VVLLIQHGADPTLMDSEG 104
LL+ GAD ++EG
Sbjct: 238 ACLLMDFGADTQAKNAEG 255
>pdb|3LJN|A Chain A, Ankyrin Repeat Protein From Leishmania Major
Length = 364
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 29/59 (49%)
Query: 69 DLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKG 127
D +H A R+G D V LI+ G PT+ + G T +H A +FG YL + G
Sbjct: 18 DENXEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVG 76
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 50/114 (43%), Gaps = 10/114 (8%)
Query: 101 DSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITF 160
D E IH AA+ G T V L+ G++ +Q+R G TAL A K +D + L +
Sbjct: 17 DDENXEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHL-ACKFGCVDTAKYLASV 75
Query: 161 GASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEE 214
G ++ HG +H A+ A + LV E +G P LL E
Sbjct: 76 GEVHSL---WHGQKPIHLAVXANKTDLVVALV------EGAKERGQXPESLLNE 120
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 73 TPLHWATRQG--HLDSVVLLIQHGADPTLMDSEGSTCIHQAAQF 114
T LHW G +L+ + +L+Q GA PT D T + +A +F
Sbjct: 140 TALHWCVGLGPEYLEXIKILVQLGASPTAKDKADETPLXRAXEF 183
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 70/161 (43%), Gaps = 3/161 (1%)
Query: 52 IMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQA 111
++ FI QGA + T LH A R D+ L++ AD + D+ G T +H A
Sbjct: 39 VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAA 98
Query: 112 AQFGHTRIVAYLVA-KGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKI 170
+ L+ + +++ + +G T L+ +A ++ LI A D +
Sbjct: 99 VSADAQGVFQILIRNRATDLDARMHDGTTPLILAA-RLAVEGMLEDLINSHADVNAVDDL 157
Query: 171 HGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFML 211
G ALHWA N A L+ + ++ ++ N + TP L
Sbjct: 158 -GKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFL 197
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 29 DVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVV 88
DVN D + LHWAA N ++ + GA D + + + TPL A R+G ++
Sbjct: 150 DVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKD-MQNNREETPLFLAAREGSYETAK 208
Query: 89 LLIQHGADPTLMD 101
+L+ H A+ + D
Sbjct: 209 VLLDHFANRDITD 221
>pdb|3UI2|A Chain A, Crystal Structure Of The Cpsrp54 Tail Bound To Cpsrp43
Length = 244
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
Query: 129 NVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAI-YAKNHVA 187
+V+ D NG TAL++ A + S RLL GA +D G ALH A Y + V
Sbjct: 69 DVDAVDENGRTALLFVA-GLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEV- 126
Query: 188 ITTLVSHTSSLEIPNAQGLTPFMLLEE 214
+ LV + +E+ + +GLT L E
Sbjct: 127 VEALVELGADIEVEDERGLTALELARE 153
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 2/86 (2%)
Query: 87 VVLLIQHGADPTLMDSEGS-TCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSA 145
V LL + GAD D G T +H AA + +V LV G ++ ++D G+TAL A
Sbjct: 93 VRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALEL-A 151
Query: 146 YKVFSLDPTRLLITFGASTTIQDKIH 171
++ P + FG ++ I+
Sbjct: 152 REILKTTPKGNPMQFGRRIGLEKVIN 177
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 70/161 (43%), Gaps = 3/161 (1%)
Query: 52 IMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQA 111
++ FI QGA + T LH A R D+ L++ AD + D+ G T +H A
Sbjct: 38 VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAA 97
Query: 112 AQFGHTRIVAYLVA-KGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKI 170
+ L+ + +++ + +G T L+ +A ++ LI A D +
Sbjct: 98 VSADAQGVFQILIRNRATDLDARMHDGTTPLILAA-RLAVEGMLEDLINSHADVNAVDDL 156
Query: 171 HGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFML 211
G ALHWA N A L+ + ++ ++ N + TP L
Sbjct: 157 -GKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFL 196
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 29 DVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVV 88
DVN D + LHWAA N ++ + GA D + + + TPL A R+G ++
Sbjct: 149 DVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKD-MQNNREETPLFLAAREGSYETAK 207
Query: 89 LLIQHGADPTLMD 101
+L+ H A+ + D
Sbjct: 208 VLLDHFANRDITD 220
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 70/161 (43%), Gaps = 3/161 (1%)
Query: 52 IMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQA 111
++ FI QGA + T LH A R D+ L++ AD + D+ G T +H A
Sbjct: 6 VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAA 65
Query: 112 AQFGHTRIVAYLVA-KGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKI 170
+ L+ + +++ + +G T L+ +A ++ LI A D +
Sbjct: 66 VSADAQGVFQILIRNRATDLDARMHDGTTPLILAA-RLAVEGMLEDLINSHADVNAVDDL 124
Query: 171 HGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFML 211
G ALHWA N A L+ + ++ ++ N + TP L
Sbjct: 125 -GKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFL 164
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 29 DVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVV 88
DVN D + LHWAA N ++ + GA D + + + TPL A R+G ++
Sbjct: 117 DVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKD-MQNNREETPLFLAAREGSYETAK 175
Query: 89 LLIQHGADPTLMD 101
+L+ H A+ + D
Sbjct: 176 VLLDHFANRDITD 188
>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp
Length = 229
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 34/68 (50%)
Query: 78 ATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNG 137
A G L+ V ++ DP+ + EG T +H A + IV +L+ G NVN D +G
Sbjct: 28 AALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHG 87
Query: 138 MTALMWSA 145
T L +A
Sbjct: 88 WTPLHCAA 95
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 48/123 (39%), Gaps = 7/123 (5%)
Query: 24 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWAT--RQ 81
+ AG +VN PDS T LH AA N I + GA + A AT R+
Sbjct: 74 ITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYRE 133
Query: 82 GHLDSVVLLIQHGADPTLMDSEGSTCI-HQAAQFGHTRIVAYLVAKGINVNLQDRNGMTA 140
G+ D L LM+S + +A+FG +G +V + R+G
Sbjct: 134 GYADCATYLADVEQSMGLMNSGAVYALWDYSAEFGDE----LSFREGESVTVLRRDGPEE 189
Query: 141 LMW 143
W
Sbjct: 190 TDW 192
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 68/161 (42%), Gaps = 3/161 (1%)
Query: 52 IMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQA 111
++ FI QGA + T LH A R D+ L++ AD + D+ G T +H A
Sbjct: 3 VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADAXIQDNMGRTPLHAA 62
Query: 112 AQFGHTRIVAYLVA-KGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKI 170
+ L+ + +++ + +G T L+ +A L+ + + D
Sbjct: 63 VSADAQGVFQILLRNRATDLDARMHDGTTPLILAARLALEGMLEDLINSHADVNAVDDL- 121
Query: 171 HGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFML 211
G ALHWA N A L+ + ++ ++ N + TP L
Sbjct: 122 -GKSALHWAAAVNNVDAAVVLLKNGANKDMQNNKEETPLFL 161
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 29 DVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVV 88
DVN D + LHWAA N ++ + GA D + + + TPL A R+G ++
Sbjct: 114 DVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKD-MQNNKEETPLFLAAREGSYETAK 172
Query: 89 LLIQHGADPTLMD 101
+L+ H A+ + D
Sbjct: 173 VLLDHFANRDITD 185
>pdb|1BI7|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structure Of The Cdk6-P16ink4a Tumor Suppressor
Complex
Length = 156
Score = 38.5 bits (88), Expect = 0.010, Method: Composition-based stats.
Identities = 27/102 (26%), Positives = 47/102 (46%), Gaps = 1/102 (0%)
Query: 24 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 83
+EAG + N P+S + + + + + GA + P+H A R+G
Sbjct: 32 LEAGANPNAPNSYGRRPIQ-VMMMGSARVAELLLLHGAEPNCADPATLTRPVHDAAREGF 90
Query: 84 LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVA 125
LD++V+L + GA + D+ G + A + GH + YL A
Sbjct: 91 LDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRA 132
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 70/161 (43%), Gaps = 3/161 (1%)
Query: 52 IMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQA 111
++ FI QGA + AT LH A D+ L++ AD + D+ G T +H A
Sbjct: 38 VISDFIYQGASLHNQTDRTGATALHLAAAYSRSDAAKRLLEASADANIQDNMGRTPLHAA 97
Query: 112 AQFGHTRIVAYLVA-KGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKI 170
+ L+ + +++ + +G T L+ +A ++ LI A D +
Sbjct: 98 VSADAQGVFQILIRNRATDLDARMHDGTTPLILAA-RLAVEGMLEDLINSHADVNAVDDL 156
Query: 171 HGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFML 211
G ALHWA N A L+ + ++ ++ N + TP L
Sbjct: 157 -GKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFL 196
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 29 DVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVV 88
DVN D + LHWAA N ++ + GA D + + + TPL A R+G ++
Sbjct: 149 DVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKD-MQNNREETPLFLAAREGSYETAK 207
Query: 89 LLIQHGADPTLMD 101
+L+ H A+ + D
Sbjct: 208 VLLDHFANRDITD 220
>pdb|1DC2|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a, 20
Structures
pdb|1A5E|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a, 18
Structures
pdb|2A5E|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a,
Restrained Minimized Mean Structure
Length = 156
Score = 38.1 bits (87), Expect = 0.016, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 30/52 (57%)
Query: 74 PLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVA 125
P+H A R+G LD++V+L + GA + D+ G + A + GH + YL A
Sbjct: 81 PVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRA 132
>pdb|1D9S|A Chain A, Tumor Suppressor P15(Ink4b) Structure By Comparative
Modeling And Nmr Data
Length = 136
Score = 36.6 bits (83), Expect = 0.035, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 30/52 (57%)
Query: 74 PLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVA 125
P+H A R+G LD++V+L + GA + D+ G + A + GH I YL A
Sbjct: 81 PVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHA 132
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 36.6 bits (83), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 63/157 (40%), Gaps = 3/157 (1%)
Query: 14 ELTKVFVGKCVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQA- 72
E+T + K D + PD T H A +E++K + D Q
Sbjct: 50 EITSFLLSKMENVNLD-DYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGV 108
Query: 73 TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGIN-VN 131
T LH A + + LI++GA + D +H+AA G +++ L G + VN
Sbjct: 109 TCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVN 168
Query: 132 LQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQD 168
QD+ G T L + + L+ +GA + D
Sbjct: 169 WQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVD 205
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 36.6 bits (83), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 63/157 (40%), Gaps = 3/157 (1%)
Query: 14 ELTKVFVGKCVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQA- 72
E+T + K D + PD T H A +E++K + D Q
Sbjct: 50 EITSFLLSKMENVNLD-DYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGV 108
Query: 73 TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGIN-VN 131
T LH A + + LI++GA + D +H+AA G +++ L G + VN
Sbjct: 109 TCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVN 168
Query: 132 LQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQD 168
QD+ G T L + + L+ +GA + D
Sbjct: 169 WQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVD 205
>pdb|3DEO|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
pdb|3DEP|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
Length = 183
Score = 36.2 bits (82), Expect = 0.055, Method: Composition-based stats.
Identities = 27/80 (33%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
Query: 63 VDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGS-TCIHQAAQFGHTRIVA 121
VDA+ + + T L + G V LL + GAD D G T +H AA + +V
Sbjct: 69 VDAVDENGR-TALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVE 127
Query: 122 YLVAKGINVNLQDRNGMTAL 141
LV G ++ ++D G+TAL
Sbjct: 128 ALVELGADIEVEDERGLTAL 147
Score = 34.3 bits (77), Expect = 0.19, Method: Composition-based stats.
Identities = 30/87 (34%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
Query: 129 NVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAI-YAKNHVA 187
+V+ D NG TAL++ A + S RLL GA +D G ALH A Y + V
Sbjct: 68 DVDAVDENGRTALLFVA-GLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEV- 125
Query: 188 ITTLVSHTSSLEIPNAQGLTPFMLLEE 214
+ LV + +E+ + +GLT L E
Sbjct: 126 VEALVELGADIEVEDERGLTALELARE 152
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 36.2 bits (82), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 63/157 (40%), Gaps = 3/157 (1%)
Query: 14 ELTKVFVGKCVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQA- 72
E+T + K D + PD T H A +E++K + D Q
Sbjct: 50 EITSFLLSKMENVNLD-DYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGV 108
Query: 73 TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGIN-VN 131
T LH A + + LI++GA + D +H+AA G +++ L G + VN
Sbjct: 109 TCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVN 168
Query: 132 LQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQD 168
QD+ G T L + + L+ +GA + D
Sbjct: 169 WQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVD 205
>pdb|3KEA|A Chain A, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
pdb|3KEA|B Chain B, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
Length = 285
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Query: 42 HWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMD 101
++A +N + ++ ++ GA+ + + + PLH A V +L+ G D + D
Sbjct: 36 YYAIADNNVRLVCTLLNAGALKNLLENEF---PLHQAATLEDTKIVKILLFSGLDDSQFD 92
Query: 102 SEGSTCIHQAAQFGHTRIVAYLVAKG 127
+G+T ++ A G+ + V V K
Sbjct: 93 DKGNTALYYAVDSGNXQTVKLFVKKN 118
>pdb|1SW6|A Chain A, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
pdb|1SW6|B Chain B, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
Length = 327
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 26/41 (63%)
Query: 73 TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQ 113
TPLHW T +L+ V L++HG++ D+ G +C+ +A +
Sbjct: 133 TPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVK 173
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 27/45 (60%)
Query: 101 DSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSA 145
DS G TC++ AA+ G+ IV L+ G + + +++G+ + + A
Sbjct: 280 DSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGA 324
>pdb|1YMP|A Chain A, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
pdb|1YMP|B Chain B, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
Length = 135
Score = 33.5 bits (75), Expect = 0.31, Method: Composition-based stats.
Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Query: 24 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 83
+ + DVN D + LHWAA N ++ + GA D + + + TPL A R+G
Sbjct: 35 INSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKD-MQNNKEETPLFLAAREGS 93
Query: 84 LDSVVLLIQHGADPTLMD 101
++ +L+ H A+ + D
Sbjct: 94 YETAKVLLDHFANRDITD 111
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 33.1 bits (74), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 29/60 (48%)
Query: 39 TLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPT 98
T LH A I+ E+++ GA ++ TPLH A + LL++ GADPT
Sbjct: 160 TPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPT 219
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 21/43 (48%)
Query: 99 LMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTAL 141
L + G T +H AA G V L A G V + +R G TAL
Sbjct: 40 LQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTAL 82
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 33.1 bits (74), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 29/60 (48%)
Query: 39 TLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPT 98
T LH A I+ E+++ GA ++ TPLH A + LL++ GADPT
Sbjct: 160 TPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPT 219
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 21/43 (48%)
Query: 99 LMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTAL 141
L + G T +H AA G V L A G V + +R G TAL
Sbjct: 40 LQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTAL 82
>pdb|3RPG|B Chain B, Bmi1RING1B-Ubch5c Complex Structure
Length = 117
Score = 32.3 bits (72), Expect = 0.70, Method: Composition-based stats.
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 386 SFCSTCLVRKPIRSKHCSICNRCVAK 411
SFC TC+VR SK+C IC+ V K
Sbjct: 37 SFCKTCIVRYLETSKYCPICDVQVHK 62
>pdb|2CKL|A Chain A, Ring1b-Bmi1 E3 Catalytic Domain Structure
Length = 108
Score = 32.3 bits (72), Expect = 0.76, Method: Composition-based stats.
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 386 SFCSTCLVRKPIRSKHCSICNRCVAK 411
SFC TC+VR SK+C IC+ V K
Sbjct: 37 SFCKTCIVRYLETSKYCPICDVQVHK 62
>pdb|2H0D|A Chain A, Structure Of A Bmi-1-Ring1b Polycomb Group Ubiquitin
Ligase Complex
Length = 97
Score = 32.3 bits (72), Expect = 0.85, Method: Composition-based stats.
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 386 SFCSTCLVRKPIRSKHCSICNRCVAK 411
SFC TC+VR SK+C IC+ V K
Sbjct: 33 SFCKTCIVRYLETSKYCPICDVQVHK 58
>pdb|3KR9|A Chain A, Crystal Structure Of Streptococcus Pneumoniae Sp1610, A
Putative Trna (M1a22) Methyltransferase
pdb|3KU1|A Chain A, Crystal Structure Of Streptococcus Pneumoniae Sp1610, A
Putative Trna (M1a22) Methyltransferase, In Complex
With S- Adenosyl-L-Methionine
pdb|3KU1|B Chain B, Crystal Structure Of Streptococcus Pneumoniae Sp1610, A
Putative Trna (M1a22) Methyltransferase, In Complex
With S- Adenosyl-L-Methionine
pdb|3KU1|C Chain C, Crystal Structure Of Streptococcus Pneumoniae Sp1610, A
Putative Trna (M1a22) Methyltransferase, In Complex
With S- Adenosyl-L-Methionine
pdb|3KU1|D Chain D, Crystal Structure Of Streptococcus Pneumoniae Sp1610, A
Putative Trna (M1a22) Methyltransferase, In Complex
With S- Adenosyl-L-Methionine
pdb|3KU1|E Chain E, Crystal Structure Of Streptococcus Pneumoniae Sp1610, A
Putative Trna (M1a22) Methyltransferase, In Complex
With S- Adenosyl-L-Methionine
pdb|3KU1|F Chain F, Crystal Structure Of Streptococcus Pneumoniae Sp1610, A
Putative Trna (M1a22) Methyltransferase, In Complex
With S- Adenosyl-L-Methionine
pdb|3KU1|G Chain G, Crystal Structure Of Streptococcus Pneumoniae Sp1610, A
Putative Trna (M1a22) Methyltransferase, In Complex
With S- Adenosyl-L-Methionine
pdb|3KU1|H Chain H, Crystal Structure Of Streptococcus Pneumoniae Sp1610, A
Putative Trna (M1a22) Methyltransferase, In Complex
With S- Adenosyl-L-Methionine
Length = 225
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 46 INNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVV 88
I+ R+E++ F+SQGAI+ +G D P+ R G + S +
Sbjct: 2 ISKRLELVASFVSQGAILLDVGSDHAYLPIELVER-GQIKSAI 43
>pdb|1NA6|A Chain A, Crystal Structure Of Restriction Endonuclease Ecorii
Mutant R88a
pdb|1NA6|B Chain B, Crystal Structure Of Restriction Endonuclease Ecorii
Mutant R88a
Length = 404
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 27/65 (41%)
Query: 84 LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMW 143
L+ V L H + DSE + +A FG TR + G LQD AL
Sbjct: 60 LNPSVFLTAHVSSHDCPDSEARAIYYNSAHFGKTRNEKRITRWGRGSPLQDPENTGALTL 119
Query: 144 SAYKV 148
A+K+
Sbjct: 120 LAFKL 124
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 28.9 bits (63), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 47/108 (43%), Gaps = 9/108 (8%)
Query: 43 WAAINNR--IEIMKYFISQGAIVDAIGG-DLQATP---LHWATR---QGHLDSVVLLIQH 93
W AI NR + +++ F + + G D QA LH A + Q L V +IQ+
Sbjct: 137 WTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQN 196
Query: 94 GADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTAL 141
G ++G+T +H AA + + L+ V + G TAL
Sbjct: 197 GGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETAL 244
>pdb|2B0O|E Chain E, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|F Chain F, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|G Chain G, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|H Chain H, Crystal Structure Of Uplc1 Gap Domain
Length = 301
Score = 28.9 bits (63), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 47/108 (43%), Gaps = 9/108 (8%)
Query: 43 WAAINNR--IEIMKYFISQGAIVDAIGG-DLQATP---LHWATR---QGHLDSVVLLIQH 93
W AI NR + +++ F + + G D QA LH A + Q L V +IQ+
Sbjct: 156 WTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQN 215
Query: 94 GADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTAL 141
G ++G+T +H AA + + L+ V + G TAL
Sbjct: 216 GGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETAL 263
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.328 0.140 0.463
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,428,332
Number of Sequences: 62578
Number of extensions: 685452
Number of successful extensions: 2167
Number of sequences better than 100.0: 116
Number of HSP's better than 100.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1464
Number of HSP's gapped (non-prelim): 401
length of query: 584
length of database: 14,973,337
effective HSP length: 104
effective length of query: 480
effective length of database: 8,465,225
effective search space: 4063308000
effective search space used: 4063308000
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 54 (25.4 bits)