RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy9492
(584 letters)
>gnl|CDD|216554 pfam01529, zf-DHHC, DHHC palmitoyltransferase. This family
includes the well known DHHC zinc binding domain as well
as three of the four conserved transmembrane regions
found in this family of palmitoyltransferase enzymes.
Length = 167
Score = 146 bits (371), Expect = 2e-41
Identities = 53/174 (30%), Positives = 82/174 (47%), Gaps = 12/174 (6%)
Query: 348 WYNFIKCWKGDPGVITAPQDEKFR---YIIELAERGTFEPLSFCSTCLVRKPIRSKHCSI 404
+++ K DPG + EK + E E + L FCSTC + KP RS HC +
Sbjct: 1 LWSYFKTIFTDPGYVPKNPTEKEQEKQPDEESEEGDEEDELKFCSTCNIIKPPRSHHCRV 60
Query: 405 CNRCVAKFDHHCPWVGNCIGAKNHKYFVGYISSLLFMCCFVLYGIAKYWKSKCQFQLSHE 464
CNRCV +FDHHCPW+ NCIG +NHKYF+ ++ L +L Y +
Sbjct: 61 CNRCVLRFDHHCPWLNNCIGRRNHKYFLLFLLYLTLYLILLLVLSFYYLVYLIRNIELFF 120
Query: 465 REVMFVVWDMLQCDGWVGFILLNAFVHAIWITVLLSCQLYQIISLGMTTNERMN 518
++ + + +L+ + ++++ LL LY I +TT E +
Sbjct: 121 FLILSLFSSI--------ILLVLSLFFLLFLSFLLFFHLYL-ILKNITTYEYIK 165
>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate
protein-protein interactions in very diverse families of
proteins. The number of ANK repeats in a protein can
range from 2 to over 20 (ankyrins, for example). ANK
repeats may occur in combinations with other types of
domains. The structural repeat unit contains two
antiparallel helices and a beta-hairpin, repeats are
stacked in a superhelical arrangement; this alignment
contains 4 consecutive repeats.
Length = 126
Score = 118 bits (298), Expect = 1e-31
Identities = 46/117 (39%), Positives = 69/117 (58%), Gaps = 1/117 (0%)
Query: 31 NEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLL 90
N D + T LH AA N +E++K + GA V+A D + TPLH A + GHL+ V LL
Sbjct: 1 NARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGR-TPLHLAAKNGHLEIVKLL 59
Query: 91 IQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYK 147
++ GAD D +G+T +H AA+ G+ +V L+ G +VN +D++G T L +A
Sbjct: 60 LEKGADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKN 116
Score = 117 bits (296), Expect = 2e-31
Identities = 47/120 (39%), Positives = 68/120 (56%), Gaps = 2/120 (1%)
Query: 73 TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 132
TPLH A GHL+ V LL+++GAD D++G T +H AA+ GH IV L+ KG +VN
Sbjct: 9 TPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNA 68
Query: 133 QDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLV 192
+D++G T L +A +LD +LL+ GA +DK G LH A + + L+
Sbjct: 69 RDKDGNTPLHLAARN-GNLDVVKLLLKHGADVNARDK-DGRTPLHLAAKNGHLEVVKLLL 126
Score = 102 bits (256), Expect = 7e-26
Identities = 45/101 (44%), Positives = 61/101 (60%), Gaps = 1/101 (0%)
Query: 24 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 83
+E G DVN D++ T LH AA N +EI+K + +GA V+A TPLH A R G+
Sbjct: 27 LENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNAR-DKDGNTPLHLAARNGN 85
Query: 84 LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLV 124
LD V LL++HGAD D +G T +H AA+ GH +V L+
Sbjct: 86 LDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLLL 126
Score = 94.4 bits (235), Expect = 4e-23
Identities = 37/111 (33%), Positives = 54/111 (48%), Gaps = 2/111 (1%)
Query: 101 DSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITF 160
D +G T +H AA GH +V L+ G +VN +D +G T L +A L+ +LL+
Sbjct: 4 DEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKN-GHLEIVKLLLEK 62
Query: 161 GASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFML 211
GA +DK GN LH A N + L+ H + + + G TP L
Sbjct: 63 GADVNARDK-DGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHL 112
>gnl|CDD|227598 COG5273, COG5273, Uncharacterized protein containing DHHC-type Zn
finger [General function prediction only].
Length = 309
Score = 119 bits (300), Expect = 7e-30
Identities = 58/243 (23%), Positives = 101/243 (41%), Gaps = 9/243 (3%)
Query: 285 FISLYIVMQVIGTVMFDERLFKILPLPVYFATKFWIYITWLFWITPVVNFFVSLLFFSTS 344
+IV V + + ++ ++ +Y + + + +LF
Sbjct: 9 STLGFIVFLVRLLR--TGLYAYKMFIGLFLLSRIVVYTLLVIVKSLSLVVLFIILFIVIL 66
Query: 345 GVLWYNFIKCWKGDPGVITAPQDE-KFRYIIE-LAERGTFEPLSFCSTCLVRKPIRSKHC 402
+ ++++ DPG + +R I L + G F +FCSTC + KP RS HC
Sbjct: 67 VLASFSYLLLLVSDPGYLGENITLSGYRETISRLLDDGKFGTENFCSTCNIYKPPRSHHC 126
Query: 403 SICNRCVAKFDHHCPWVGNCIGAKNHKYFVGYISSLLF-MCCFVLYGIA--KYWKSKCQF 459
SICNRCV KFDHHCPW+ NC+G +N+++F ++ + +L S
Sbjct: 127 SICNRCVLKFDHHCPWINNCVGFRNYRFFYQFLLYTILVALVVLLSTAYYIAGIFSIRHD 186
Query: 460 QLSHEREVMFVVWDMLQCDGWVGFILLNAFVHAIWITVLLSCQLYQIISLGMTTNERMNA 519
++F + ++ LL F+ + + L + + QI G +T E
Sbjct: 187 TSLAICFLIFGCSLLG-VVFFIITTLLLLFLIYLILNNLTTIEFIQISR-GGSTLEFFPL 244
Query: 520 NRY 522
R
Sbjct: 245 CRE 247
>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies).
Length = 91
Score = 98.5 bits (246), Expect = 6e-25
Identities = 40/94 (42%), Positives = 59/94 (62%), Gaps = 3/94 (3%)
Query: 41 LHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLM 100
LH AA N +E++K + +GA V+ GD T LH A R G+L+ V LL++HGAD
Sbjct: 1 LHLAAKNGNLELVKLLLEKGADVNL--GD-TDTALHLAARNGNLEIVKLLLEHGADVNAK 57
Query: 101 DSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQD 134
D +G+T +H AA+ G+ IV L+ G ++NL+D
Sbjct: 58 DKDGNTALHLAARNGNLEIVKLLLEHGADINLKD 91
Score = 83.8 bits (208), Expect = 1e-19
Identities = 35/98 (35%), Positives = 56/98 (57%), Gaps = 11/98 (11%)
Query: 75 LHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQD 134
LH A + G+L+ V LL++ GAD L D+ T +H AA+ G+ IV L+ G +VN +D
Sbjct: 1 LHLAAKNGNLELVKLLLEKGADVNLGDT--DTALHLAARNGNLEIVKLLLEHGADVNAKD 58
Query: 135 RNGMTALMWSA----YKVFSLDPTRLLITFGASTTIQD 168
++G TAL +A ++ +LL+ GA ++D
Sbjct: 59 KDGNTALHLAARNGNLEIV-----KLLLEHGADINLKD 91
Score = 76.9 bits (190), Expect = 2e-17
Identities = 37/78 (47%), Positives = 46/78 (58%), Gaps = 3/78 (3%)
Query: 24 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 83
+E G DVN D T T LH AA N +EI+K + GA V+A D T LH A R G+
Sbjct: 17 LEKGADVNLGD--TDTALHLAARNGNLEIVKLLLEHGADVNAKDKDGN-TALHLAARNGN 73
Query: 84 LDSVVLLIQHGADPTLMD 101
L+ V LL++HGAD L D
Sbjct: 74 LEIVKLLLEHGADINLKD 91
Score = 41.9 bits (99), Expect = 6e-05
Identities = 22/104 (21%), Positives = 34/104 (32%), Gaps = 37/104 (35%)
Query: 108 IHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQ 167
+H AA+ G+ +V L+ KG +VNL D +
Sbjct: 1 LHLAAKNGNLELVKLLLEKGADVNLGDTDT------------------------------ 30
Query: 168 DKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFML 211
ALH A N + L+ H + + + G T L
Sbjct: 31 -------ALHLAARNGNLEIVKLLLEHGADVNAKDKDGNTALHL 67
>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction
only].
Length = 235
Score = 91.8 bits (227), Expect = 5e-21
Identities = 47/154 (30%), Positives = 73/154 (47%), Gaps = 9/154 (5%)
Query: 9 NWYEFELTKVFVGKCVEAGQDVNEPDSETVTLLHWAAINNR-----IEIMKYFISQGAIV 63
+ + V + +G DVN D++ T LH AA+N IE+ K + GA +
Sbjct: 78 HSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADL 137
Query: 64 DAIG--GDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVA 121
D + TPLHWA G D V LL++ GADP +S G T + AA+ G +V
Sbjct: 138 DVNNLRDEDGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGRIELVK 197
Query: 122 YLVAKGINVNLQ--DRNGMTALMWSAYKVFSLDP 153
L+ KG++++L + G+ S + +L
Sbjct: 198 LLLDKGLHLSLLKFNLEGVANANVSKRNILNLTS 231
Score = 74.5 bits (182), Expect = 5e-15
Identities = 44/181 (24%), Positives = 68/181 (37%), Gaps = 15/181 (8%)
Query: 28 QDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSV 87
D + LL A+++ + + A PLH A +G V
Sbjct: 35 SDKKLNLYLELALLPAASLSELLLKLIVDRHLAARDLDGR-----LPLHSAASKGDDKIV 89
Query: 88 VLLIQHGADPTLMDSEGSTCIHQAA-----QFGHTRIVAYLVAKGI---NVNLQDRNGMT 139
LL+ GAD D++G T +H AA G+ + L+ G NL+D +G T
Sbjct: 90 KLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNT 149
Query: 140 ALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLE 199
L W+A D LL+ GA ++ +G AL A + L+ L
Sbjct: 150 PLHWAALN-GDADIVELLLEAGADPNSRNS-YGVTALDPAAKNGRIELVKLLLDKGLHLS 207
Query: 200 I 200
+
Sbjct: 208 L 208
Score = 66.0 bits (160), Expect = 4e-12
Identities = 33/118 (27%), Positives = 55/118 (46%), Gaps = 8/118 (6%)
Query: 101 DSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAY----KVFSLDPTRL 156
D +G +H AA G +IV L+A G +VN +D +G T L +A +++ +L
Sbjct: 70 DLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKL 129
Query: 157 LITFGASTTI---QDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFML 211
L+ GA + +D+ GN LHWA + + L+ + N+ G+T
Sbjct: 130 LLEAGADLDVNNLRDE-DGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDP 186
Score = 29.4 bits (65), Expect = 4.2
Identities = 14/77 (18%), Positives = 26/77 (33%), Gaps = 2/77 (2%)
Query: 167 QDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGAPWLGKATV 226
+ G + LH A + + L++ + + +A G TP L N P
Sbjct: 68 ARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVA 127
Query: 227 DKITELKDHY--NTQQN 241
+ E N ++
Sbjct: 128 KLLLEAGADLDVNNLRD 144
>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional.
Length = 434
Score = 81.5 bits (201), Expect = 2e-16
Identities = 58/195 (29%), Positives = 92/195 (47%), Gaps = 6/195 (3%)
Query: 15 LTKVFVGKCVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATP 74
+ K + ++ G DVN D+E T LH+A +E +K GA V+ I D P
Sbjct: 102 IEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVN-IEDDNGCYP 160
Query: 75 LHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQD 134
+H A + D + LL++ GA + D+ G + +H AA++G + L+ G ++ +
Sbjct: 161 IHIAIKHNFFDIIKLLLEKGAYANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNKC 220
Query: 135 RNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAI-YAKNHVAITTLVS 193
+NG T L + S LLI AS QD I G+ LH AI + I L+
Sbjct: 221 KNGFTPLHNAIIHNRSAIE--LLIN-NASINDQD-IDGSTPLHHAINPPCDIDIIDILLY 276
Query: 194 HTSSLEIPNAQGLTP 208
H + + I + +G P
Sbjct: 277 HKADISIKDNKGENP 291
Score = 56.9 bits (137), Expect = 2e-08
Identities = 44/137 (32%), Positives = 70/137 (51%), Gaps = 4/137 (2%)
Query: 73 TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 132
T LH+A ++G L+S+ +L ++GAD + D G IH A + I+ L+ KG N+
Sbjct: 126 TFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANV 185
Query: 133 QDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLV 192
+D NG + L +A + +LLI G + K +G LH AI N AI L+
Sbjct: 186 KDNNGESPLHNAA-EYGDYACIKLLIDHGNHIMNKCK-NGFTPLHNAII-HNRSAIELLI 242
Query: 193 SHTSSLEIPNAQGLTPF 209
++ +S+ + G TP
Sbjct: 243 NN-ASINDQDIDGSTPL 258
Score = 56.9 bits (137), Expect = 2e-08
Identities = 52/197 (26%), Positives = 83/197 (42%), Gaps = 26/197 (13%)
Query: 36 ETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGA 95
ET T L A + +I++ FI GA ++ I + PL A + G D + LLI +G
Sbjct: 34 ETTTPLIDAIRSGDAKIVELFIKHGADINHINTKI-PHPLLTAIKIGAHDIIKLLIDNGV 92
Query: 96 DPTLM-----------------------DSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 132
D +++ D+E T +H A + G + L G +VN+
Sbjct: 93 DTSILPIPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNI 152
Query: 133 QDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLV 192
+D NG + A K D +LL+ GA ++D +G LH A ++ I L+
Sbjct: 153 EDDNGCYPIH-IAIKHNFFDIIKLLLEKGAYANVKDN-NGESPLHNAAEYGDYACIKLLI 210
Query: 193 SHTSSLEIPNAQGLTPF 209
H + + G TP
Sbjct: 211 DHGNHIMNKCKNGFTPL 227
>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional.
Length = 413
Score = 69.2 bits (169), Expect = 2e-12
Identities = 45/134 (33%), Positives = 63/134 (47%), Gaps = 1/134 (0%)
Query: 39 TLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPT 98
T LH A I +++IMK I++GA D D + +PLH A G + + LLI H A
Sbjct: 104 TPLHLATILKKLDIMKLLIARGADPDIPNTD-KFSPLHLAVMMGDIKGIELLIDHKACLD 162
Query: 99 LMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLI 158
+ D G T + A G I L+ G N++ +NG A + A + +D RL I
Sbjct: 163 IEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLFI 222
Query: 159 TFGASTTIQDKIHG 172
GA I I G
Sbjct: 223 KRGADCNIMFMIEG 236
Score = 50.4 bits (120), Expect = 2e-06
Identities = 46/176 (26%), Positives = 80/176 (45%), Gaps = 18/176 (10%)
Query: 44 AAINNRIEIMKYFISQG-----AIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPT 98
A + ++I + + G I D I +P+ A + +++ LL++HGA P
Sbjct: 9 AILFGELDIARRLLDIGINPNFEIYDGI------SPIKLAMKFRDSEAIKLLMKHGAIPD 62
Query: 99 LMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVN-LQDRNGMTALMWSAYKVFSLDPTRLL 157
+ + + +H A + G + V L+ G + + ++GMT L A + LD +LL
Sbjct: 63 VKYPDIESELHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPL-HLATILKKLDIMKLL 121
Query: 158 ITFGASTTIQ--DKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFML 211
I GA I DK LH A+ + I L+ H + L+I + G TP ++
Sbjct: 122 IARGADPDIPNTDKF---SPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPLII 174
Score = 29.6 bits (66), Expect = 5.3
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 38 VTLLHWAAINNRIEIMKYFISQGA 61
V L +A NN+I+I++ FI +GA
Sbjct: 203 VAALCYAIENNKIDIVRLFIKRGA 226
>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional.
Length = 477
Score = 66.8 bits (163), Expect = 1e-11
Identities = 42/158 (26%), Positives = 73/158 (46%), Gaps = 2/158 (1%)
Query: 51 EIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQ 110
EI K +S GA ++ T LH+AT LL+ +GA+ + D ++ +H
Sbjct: 148 EITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHH 207
Query: 111 AAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKI 170
A + + IV L+ G + + +D+ G T L S D +LL+ G + I
Sbjct: 208 AVKHYNKPIVHILLENGASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSYI 267
Query: 171 HGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTP 208
G ALH +I ++ + + L+ + + + N+ LTP
Sbjct: 268 LGLTALHSSIKSERKLKL--LLEYGADINSLNSYKLTP 303
Score = 59.9 bits (145), Expect = 2e-09
Identities = 45/160 (28%), Positives = 76/160 (47%), Gaps = 11/160 (6%)
Query: 12 EFELTKVFVGKCVEAGQDVNEPDSETV-TLLHWAAINNRIEIMKYFISQGAIVDAIGGDL 70
E E+TK+ + G D+N D T LH+A N + + +S GA V+ I
Sbjct: 146 EAEITKLLL----SYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVN-IPDKT 200
Query: 71 QATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQF-GHTRIVAYLVAKGIN 129
+PLH A + + V +L+++GA D G+T +H + + I+ L+ G++
Sbjct: 201 NNSPLHHAVKHYNKPIVHILLENGASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVD 260
Query: 130 VNLQDR-NGMTALMWSAYKVFSLDPTRLLITFGASTTIQD 168
VN + G+TAL S + S +LL+ +GA +
Sbjct: 261 VNAKSYILGLTALHSS---IKSERKLKLLLEYGADINSLN 297
Score = 59.5 bits (144), Expect = 2e-09
Identities = 51/222 (22%), Positives = 86/222 (38%), Gaps = 37/222 (16%)
Query: 24 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATR--- 80
+ G +VN+PD +T LH MK I ++ L A + R
Sbjct: 57 LTRGHNVNQPDHRDLTPLHIICKEPNKLGMKEMIRS-INKCSVFYTLVAIKDAFNNRNVE 115
Query: 81 ----------QGHLDS------------------VVLLIQHGADPTLMD-SEGSTCIHQA 111
+ LL+ +GAD + D +G+T +H A
Sbjct: 116 IFKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYGADINMKDRHKGNTALHYA 175
Query: 112 AQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIH 171
+ R+ L++ G NVN+ D+ + + A K ++ +L+ GAST +DK
Sbjct: 176 TENKDQRLTELLLSYGANVNIPDK-TNNSPLHHAVKHYNKPIVHILLENGASTDARDK-C 233
Query: 172 GNVALHWAI-YAKNHVAITTLVSHTSSLEIPNA-QGLTPFML 211
GN LH ++ Y K++ + L+ H + + GLT
Sbjct: 234 GNTPLHISVGYCKDYDILKLLLEHGVDVNAKSYILGLTALHS 275
Score = 39.9 bits (93), Expect = 0.004
Identities = 23/91 (25%), Positives = 40/91 (43%), Gaps = 7/91 (7%)
Query: 24 VEAGQDVNEPDSETVTLLHWAA---INNRIEIMKYFISQGAIVDAIGGDLQATPLHWATR 80
+E G + D T LH + + +I+K + G V+A L T LH + +
Sbjct: 221 LENGASTDARDKCGNTPLHISVGYCKD--YDILKLLLEHGVDVNAKSYILGLTALHSSIK 278
Query: 81 QGHLDSVVLLIQHGADPTLMDSEGSTCIHQA 111
+ LL+++GAD ++S T + A
Sbjct: 279 SE--RKLKLLLEYGADINSLNSYKLTPLSSA 307
Score = 29.1 bits (65), Expect = 6.9
Identities = 20/89 (22%), Positives = 38/89 (42%), Gaps = 11/89 (12%)
Query: 102 SEGSTCI-----HQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRL 156
S ++ I HQA + + +V L+ +G NVN D +T L + +P +L
Sbjct: 30 STSASLIPFIPLHQAVEARNLDVVKSLLTRGHNVNQPDHRDLTPL-----HIICKEPNKL 84
Query: 157 LITFGASTTIQDKI-HGNVALHWAIYAKN 184
+ + + + + VA+ A +N
Sbjct: 85 GMKEMIRSINKCSVFYTLVAIKDAFNNRN 113
>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies).
Length = 54
Score = 59.2 bits (144), Expect = 2e-11
Identities = 18/52 (34%), Positives = 29/52 (55%)
Query: 73 TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLV 124
T LH A G L+ V L++ G D D +G+T +H AA+ G+ ++ L+
Sbjct: 3 TALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54
Score = 49.2 bits (118), Expect = 6e-08
Identities = 18/44 (40%), Positives = 27/44 (61%)
Query: 104 GSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYK 147
G T +H+AA G +V YL+ KG+++N D +G TAL +A
Sbjct: 1 GRTALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAEN 44
Score = 48.0 bits (115), Expect = 1e-07
Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 37 TVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLI 91
T LH AAI+ R+E++KY + +G ++ D T LH A G+L+ + LL+
Sbjct: 1 GRTALHKAAISGRLELVKYLLEKGVDINRTDED-GNTALHIAAENGNLEVLKLLL 54
Score = 36.1 bits (84), Expect = 0.002
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 23 CVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFI 57
+E G D+N D + T LH AA N +E++K +
Sbjct: 20 LLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54
>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional.
Length = 471
Score = 64.3 bits (157), Expect = 7e-11
Identities = 41/146 (28%), Positives = 64/146 (43%), Gaps = 13/146 (8%)
Query: 47 NNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH---LDSVVLLIQHGADPTLMDSE 103
N +E ++ ++ GA V+ G TPLH D V LL++ GAD +
Sbjct: 24 NVTVEEVRRLLAAGADVNFRGE-YGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPERC 82
Query: 104 GSTCIHQAAQFGHT-RIVAYLVAKGINVNLQDRNGMTALMWSAY-KVFSLDPT--RLLIT 159
G T +H T ++ L+ G +VN +D+ G T L Y F+++P RLL+
Sbjct: 83 GFTPLHLYLYNATTLDVIKLLIKAGADVNAKDKVGRTPL--HVYLSGFNINPKVIRLLLR 140
Query: 160 FGASTTIQDKIHGNVALHWAIYAKNH 185
GA D +G L + K+
Sbjct: 141 KGADVNALDL-YGMTPLA--VLLKSR 163
Score = 63.1 bits (154), Expect = 2e-10
Identities = 50/183 (27%), Positives = 73/183 (39%), Gaps = 29/183 (15%)
Query: 24 VEAGQDVNEPDSETVTLLHWAAINNR--IEIMKYFISQGAI---VDAIGGDLQATPLHWA 78
+ G DVN D +T L + +E+++ I GA VD + LH
Sbjct: 139 LRKGADVNALDLYGMTPLAVLLKSRNANVELLRLLIDAGADVYAVDDRF----RSLLHH- 193
Query: 79 TRQGHLDS-------VVLLIQHGADPTLMDSEGSTCIHQAAQFGHTR--IVAYLVAKGIN 129
HL S V LI+ G DP D G+T +H A + +V L+ GI+
Sbjct: 194 ----HLQSFKPRARIVRELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGIS 249
Query: 130 VNLQDRNGMTALMWSAYKVFSLDPT--RLLITFGASTTIQDKIHGNVALHWAIYAKNHVA 187
+N ++R G T L ++A +P R LI GA GN L + N A
Sbjct: 250 INARNRYGQTPLHYAAV---FNNPRACRRLIALGADINAVSS-DGNTPLSLMVRNNNGRA 305
Query: 188 ITT 190
+
Sbjct: 306 VRA 308
Score = 54.6 bits (132), Expect = 8e-08
Identities = 55/198 (27%), Positives = 79/198 (39%), Gaps = 19/198 (9%)
Query: 24 VEAGQDVNEPDSETVTLLHW---AAINNRIEIMKYFISQGAIVDA--IGGDLQATPLH-W 77
+ AG DVN T LH + +I++ + GA V+A G TPLH +
Sbjct: 34 LAAGADVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPERCGF---TPLHLY 90
Query: 78 ATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQ--AAQFGHTRIVAYLVAKGINVNLQDR 135
LD + LLI+ GAD D G T +H + + +++ L+ KG +VN D
Sbjct: 91 LYNATTLDVIKLLIKAGADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNALDL 150
Query: 136 NGMTALMWSAYKVF---SLDPTRLLITFGASTTIQDKIHGNVALH-WAIYAKNHVAI-TT 190
GMT L + +++ RLLI GA D LH K I
Sbjct: 151 YGMTPL--AVLLKSRNANVELLRLLIDAGADVYAVDDR-FRSLLHHHLQSFKPRARIVRE 207
Query: 191 LVSHTSSLEIPNAQGLTP 208
L+ + G TP
Sbjct: 208 LIRAGCDPAATDMLGNTP 225
Score = 35.8 bits (83), Expect = 0.061
Identities = 28/115 (24%), Positives = 49/115 (42%), Gaps = 12/115 (10%)
Query: 20 VGKCVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWAT 79
V + AG +N + T LH+AA+ N + I+ GA ++A+ D TPL
Sbjct: 240 VLPLLIAGISINARNRYGQTPLHYAAVFNNPRACRRLIALGADINAVSSD-GNTPLSLMV 298
Query: 80 RQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGH------TRI-VAYLVAKG 127
R + +V + + + ++ A+ G TR+ VA +V +G
Sbjct: 299 RNNNGRAVRAALAKNPSAETVAA----TLNTASVAGGDIPSDATRLCVAKVVLRG 349
>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional.
Length = 422
Score = 61.2 bits (149), Expect = 5e-10
Identities = 33/127 (25%), Positives = 56/127 (44%), Gaps = 17/127 (13%)
Query: 27 GQDVNEPDSETVTLLHWAAINNRI--EIMKYFISQGAIVDAI---------GGDLQA--- 72
G +VN +S+ LLH +N+I +I+K I +G ++A G +
Sbjct: 131 GANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDINAKNRVNYLLSYGVPINIKDV 190
Query: 73 ---TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGIN 129
TPLH+A + + V L+ GA+P L++ G T +H A + I L+ G +
Sbjct: 191 YGFTPLHYAVYNNNPEFVKYLLDLGANPNLVNKYGDTPLHIAILNNNKEIFKLLLNNGPS 250
Query: 130 VNLQDRN 136
+
Sbjct: 251 IKTIIET 257
Score = 55.8 bits (135), Expect = 3e-08
Identities = 38/141 (26%), Positives = 55/141 (39%), Gaps = 27/141 (19%)
Query: 24 VEAGQDVNEPDSETVTLLHWAAIN--NRIEIMKYFISQGA---IVDAIGGDLQATPLHWA 78
+E G +VN PD+ +T L +A N I++Y + GA I ++ G LH
Sbjct: 93 LEYGANVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGE----NLLHLY 148
Query: 79 TRQGH--LDSVVLLIQHGADPTLMDS----------------EGSTCIHQAAQFGHTRIV 120
L + LLI G D + G T +H A + V
Sbjct: 149 LESNKIDLKILKLLIDKGVDINAKNRVNYLLSYGVPINIKDVYGFTPLHYAVYNNNPEFV 208
Query: 121 AYLVAKGINVNLQDRNGMTAL 141
YL+ G N NL ++ G T L
Sbjct: 209 KYLLDLGANPNLVNKYGDTPL 229
Score = 49.7 bits (119), Expect = 3e-06
Identities = 46/212 (21%), Positives = 85/212 (40%), Gaps = 28/212 (13%)
Query: 22 KCVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGA-IVDAIGGDLQATPLHWATR 80
+ + + V L+ A I+++K + GA I + + TPLH+ +
Sbjct: 20 YIIMEDDLNDYSYKKPVLPLYLAKEARNIDVVKILLDNGADINSSTKNNS--TPLHYLSN 77
Query: 81 QGH-----LDSVVLLIQHGADPTLMDSEGSTCIHQAAQ--FGHTRIVAYLVAKGINVNLQ 133
+ + V LL+++GA+ D+ G T + A IV YL+ G NVN++
Sbjct: 78 IKYNLTDVKEIVKLLLEYGANVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIK 137
Query: 134 DRNGMTALMWSA-----------------YKVFSLDPTRLLITFGASTTIQDKIHGNVAL 176
+ +G L + + + L+++G I+D G L
Sbjct: 138 NSDGENLLHLYLESNKIDLKILKLLIDKGVDINAKNRVNYLLSYGVPINIKDVY-GFTPL 196
Query: 177 HWAIYAKNHVAITTLVSHTSSLEIPNAQGLTP 208
H+A+Y N + L+ ++ + N G TP
Sbjct: 197 HYAVYNNNPEFVKYLLDLGANPNLVNKYGDTP 228
>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat. Ankyrins are multifunctional
adaptors that link specific proteins to the
membrane-associated, spectrin- actin cytoskeleton. This
repeat-domain is a 'membrane-binding' domain of up to 24
repeated units, and it mediates most of the protein's
binding activities. Repeats 13-24 are especially active,
with known sites of interaction for the Na/K ATPase,
Cl/HCO(3) anion exchanger, voltage-gated sodium channel,
clathrin heavy chain and L1 family cell adhesion
molecules. The ANK repeats are found to form a
contiguous spiral stack such that ion transporters like
the anion exchanger associate in a large central cavity
formed by the ANK repeat spiral, while clathrin and cell
adhesion molecules associate with specific regions
outside this cavity.
Length = 33
Score = 46.8 bits (112), Expect = 3e-07
Identities = 16/29 (55%), Positives = 19/29 (65%)
Query: 73 TPLHWATRQGHLDSVVLLIQHGADPTLMD 101
TPLH A R GHL+ V LL++ GAD D
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNARD 32
Score = 44.1 bits (105), Expect = 2e-06
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 103 EGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDR 135
+G+T +H AA+ GH +V L+ G +VN +D+
Sbjct: 1 DGNTPLHLAARNGHLEVVKLLLEAGADVNARDK 33
Score = 38.3 bits (90), Expect = 2e-04
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 39 TLLHWAAINNRIEIMKYFISQGAIVDA 65
T LH AA N +E++K + GA V+A
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNA 30
Score = 28.3 bits (64), Expect = 0.89
Identities = 6/32 (18%), Positives = 12/32 (37%)
Query: 171 HGNVALHWAIYAKNHVAITTLVSHTSSLEIPN 202
GN LH A + + L+ + + +
Sbjct: 1 DGNTPLHLAARNGHLEVVKLLLEAGADVNARD 32
Score = 27.5 bits (62), Expect = 1.5
Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 136 NGMTALMWSAYKVFSLDPTRLLITFGASTTIQDK 169
+G T L +A L+ +LL+ GA +DK
Sbjct: 1 DGNTPLHLAARN-GHLEVVKLLLEAGADVNARDK 33
>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional.
Length = 682
Score = 52.0 bits (124), Expect = 7e-07
Identities = 46/186 (24%), Positives = 77/186 (41%), Gaps = 32/186 (17%)
Query: 24 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 83
+E G DVN D +T +H+AA +++ +S GA V+ I D + L A +
Sbjct: 165 LEGGADVNAKDIYCITPIHYAAERGNAKMVNLLLSYGADVNIIALD-DLSVLECAVDSKN 223
Query: 84 LDSV-----------------------------VLLIQHGADPTLMDSEGSTCIHQAAQF 114
+D++ +LL G +D +T +H A+Q
Sbjct: 224 IDTIKAIIDNRSNINKNDLSLLKAIRNEDLETSLLLYDAGFSVNSIDDCKNTPLHHASQA 283
Query: 115 GH-TRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGN 173
+R+V L+ +G +VN ++ G T L A + + R LI GA D+++
Sbjct: 284 PSLSRLVPKLLERGADVNAKNIKGETPLYLMAKNGYDTENIRTLIMLGADVNAADRLY-I 342
Query: 174 VALHWA 179
LH A
Sbjct: 343 TPLHQA 348
Score = 50.4 bits (120), Expect = 2e-06
Identities = 55/198 (27%), Positives = 88/198 (44%), Gaps = 9/198 (4%)
Query: 19 FVGKCVEAGQDVNEPDSETVTLLHWAAINN-RIEIMKYFISQGAIVDAIGGDLQATPLHW 77
V K +E G DVN + + T L+ A N E ++ I GA V+A L TPLH
Sbjct: 289 LVPKLLERGADVNAKNIKGETPLYLMAKNGYDTENIRTLIMLGADVNA-ADRLYITPLHQ 347
Query: 78 A-TRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRN 136
A T + D V+ L++ GA+ D T IH AA + I+ L+ G ++ +
Sbjct: 348 ASTLDRNKDIVITLLELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIEALSQK 407
Query: 137 GMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHV---AITTLVS 193
TAL ++ + LI GA+ ++K + LH+A K + I L+
Sbjct: 408 IGTALHFALCGTNPYMSVKTLIDRGANVNSKNK-DLSTPLHYA--CKKNCKLDVIEMLLD 464
Query: 194 HTSSLEIPNAQGLTPFML 211
+ + + N Q P ++
Sbjct: 465 NGADVNAINIQNQYPLLI 482
Score = 48.5 bits (115), Expect = 9e-06
Identities = 48/190 (25%), Positives = 83/190 (43%), Gaps = 21/190 (11%)
Query: 41 LHWAAINNRIEIMKYF---ISQGAIVDA-----IGGDLQA------TPLHWATRQGHLDS 86
+H+ IN IE MK I Q ++ A G D+ A TP+H+A +G+
Sbjct: 134 IHYDKINESIEYMKLIKERIQQDELLIAEMLLEGGADVNAKDIYCITPIHYAAERGNAKM 193
Query: 87 VVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAY 146
V LL+ +GAD ++ + + + A + + ++ N+N +N ++ L A
Sbjct: 194 VNLLLSYGADVNIIALDDLSVLECAVDSKNIDTIKAIIDNRSNIN---KNDLSLL--KAI 248
Query: 147 KVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKN-HVAITTLVSHTSSLEIPNAQG 205
+ L+ + LL G S D N LH A A + + L+ + + N +G
Sbjct: 249 RNEDLETSLLLYDAGFSVNSID-DCKNTPLHHASQAPSLSRLVPKLLERGADVNAKNIKG 307
Query: 206 LTPFMLLEEN 215
TP L+ +N
Sbjct: 308 ETPLYLMAKN 317
Score = 41.6 bits (97), Expect = 0.001
Identities = 45/178 (25%), Positives = 80/178 (44%), Gaps = 14/178 (7%)
Query: 24 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 83
+E G +VN D T +H+AA+ N + I+ + GA ++A+ + T LH+A +
Sbjct: 362 LELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIEALSQKI-GTALHFALCGTN 420
Query: 84 -LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFG-HTRIVAYLVAKGINVN-LQDRNGMTA 140
SV LI GA+ + + ST +H A + ++ L+ G +VN + +N
Sbjct: 421 PYMSVKTLIDRGANVNSKNKDLSTPLHYACKKNCKLDVIEMLLDNGADVNAINIQNQYPL 480
Query: 141 LMWSAYKVFSLDPTRLLITFGA----STTIQDKIHGNVALHWAIYAKNHVAITTLVSH 194
L+ Y +L+ +GA S + ++ N+ I A H+ I + H
Sbjct: 481 LIALEYHGI----VNILLHYGAELRDSRVLHKSLNDNMFSFRYIIA--HICIQDFIRH 532
>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies).
Length = 56
Score = 46.2 bits (110), Expect = 7e-07
Identities = 21/53 (39%), Positives = 36/53 (67%), Gaps = 1/53 (1%)
Query: 90 LIQHG-ADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTAL 141
L++HG D D G+T +H AA++G +V +L+ G+++NL+D +G+TAL
Sbjct: 1 LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTAL 53
Score = 43.1 bits (102), Expect = 8e-06
Identities = 19/55 (34%), Positives = 26/55 (47%)
Query: 57 ISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQA 111
+ G I TPLH A + G L+ V L++ G D L DS+G T + A
Sbjct: 2 LEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56
Score = 36.6 bits (85), Expect = 0.002
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Query: 24 VEAGQ-DVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWA 78
+E G D+N D T LH AA +E++++ + G ++ D T L A
Sbjct: 2 LEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGL-TALDLA 56
Score = 35.8 bits (83), Expect = 0.003
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Query: 123 LVAKG-INVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWA 179
L+ G I++N D NG T L +A +L+ + L+ G ++D G AL A
Sbjct: 1 LLEHGPIDLNATDGNGNTPLHLAAKYG-ALELVQWLLKPGVDLNLRDS-DGLTALDLA 56
Score = 28.9 bits (65), Expect = 0.92
Identities = 14/56 (25%), Positives = 20/56 (35%), Gaps = 1/56 (1%)
Query: 156 LLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFML 211
LL D +GN LH A + L+ L + ++ GLT L
Sbjct: 1 LLEHGPIDLNATDG-NGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDL 55
>gnl|CDD|140343 PTZ00322, PTZ00322,
6-phosphofructo-2-kinase/fructose-2,6-biphosphatase;
Provisional.
Length = 664
Score = 50.3 bits (120), Expect = 2e-06
Identities = 30/87 (34%), Positives = 46/87 (52%), Gaps = 2/87 (2%)
Query: 37 TVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGAD 96
TV L AA + + + ++ GA + D + TPLH A GH+ V +L++ GAD
Sbjct: 83 TVELCQLAASGDAVGA-RILLTGGADPNCRDYDGR-TPLHIACANGHVQVVRVLLEFGAD 140
Query: 97 PTLMDSEGSTCIHQAAQFGHTRIVAYL 123
PTL+D +G T + A + G +V L
Sbjct: 141 PTLLDKDGKTPLELAEENGFREVVQLL 167
Score = 44.1 bits (104), Expect = 2e-04
Identities = 28/94 (29%), Positives = 40/94 (42%), Gaps = 21/94 (22%)
Query: 69 DLQATPLHWATRQGHLDSVVL---------------------LIQHGADPTLMDSEGSTC 107
+ ATP H T + +D VV L+ GADP D +G T
Sbjct: 59 NKDATPDHNLTTEEVIDPVVAHMLTVELCQLAASGDAVGARILLTGGADPNCRDYDGRTP 118
Query: 108 IHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTAL 141
+H A GH ++V L+ G + L D++G T L
Sbjct: 119 LHIACANGHVQVVRVLLEFGADPTLLDKDGKTPL 152
>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel;
Provisional.
Length = 823
Score = 49.1 bits (117), Expect = 5e-06
Identities = 24/67 (35%), Positives = 39/67 (58%), Gaps = 6/67 (8%)
Query: 90 LIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSA---- 145
L++ DP + DS+G T +H AA G+ V L+ NV+++D NG TA +W+A
Sbjct: 544 LLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTA-LWNAISAK 602
Query: 146 -YKVFSL 151
+K+F +
Sbjct: 603 HHKIFRI 609
Score = 49.1 bits (117), Expect = 6e-06
Identities = 38/140 (27%), Positives = 60/140 (42%), Gaps = 39/140 (27%)
Query: 61 AIVDAIGGDLQA-TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRI 119
A +D GD + TPLH A +G+ D V++L++H + + D+ G+T + A H +I
Sbjct: 547 AKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAISAKHHKI 606
Query: 120 --VAY-----------------------------LVAKGINVNLQDRNGMTAL---MWSA 145
+ Y L+ +G+NV+ +D G TAL M
Sbjct: 607 FRILYHFASISDPHAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVAMAED 666
Query: 146 YKVFSLDPTRLLITFGASTT 165
+ +D RLLI GA
Sbjct: 667 H----VDMVRLLIMNGADVD 682
Score = 35.6 bits (82), Expect = 0.081
Identities = 24/57 (42%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 40 LLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGAD 96
LL AA N + MK + QG VD+ AT L A + H+D V LLI +GAD
Sbjct: 625 LLCTAAKRNDLTAMKELLKQGLNVDSEDHQ-GATALQVAMAEDHVDMVRLLIMNGAD 680
>gnl|CDD|222931 PHA02798, PHA02798, ankyrin-like protein; Provisional.
Length = 489
Score = 44.4 bits (105), Expect = 1e-04
Identities = 33/119 (27%), Positives = 62/119 (52%), Gaps = 12/119 (10%)
Query: 24 VEAGQDVNEPDSETVT-----LLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWA 78
+ G +VN D+E T L + + ++I+K I GA ++ D + TPL+
Sbjct: 58 INLGANVNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENGADINKKNSDGE-TPLYCL 116
Query: 79 TRQGHLDS---VVLLIQHGADPTLMDSEGSTCIHQAAQFGHT---RIVAYLVAKGINVN 131
G++++ ++ +I++GAD TL+D +G T + Q H I+ L+ KG+++N
Sbjct: 117 LSNGYINNLEILLFMIENGADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDIN 175
Score = 34.8 bits (80), Expect = 0.14
Identities = 32/112 (28%), Positives = 53/112 (47%), Gaps = 8/112 (7%)
Query: 84 LDSVVLLIQHGADPTLMDSEGS----TCIHQAAQFGHT-RIVAYLVAKGINVNLQDRNGM 138
D V L I GA+ +D+E S T + + H IV L+ G ++N ++ +G
Sbjct: 51 TDIVKLFINLGANVNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENGADINKKNSDGE 110
Query: 139 TAL--MWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAI 188
T L + S + +L+ +I GA TT+ DK G L + + +H+ I
Sbjct: 111 TPLYCLLSNGYINNLEILLFMIENGADTTLLDK-DGFTMLQVYLQSNHHIDI 161
>gnl|CDD|197603 smart00248, ANK, ankyrin repeats. Ankyrin repeats are about 33
amino acids long and occur in at least four consecutive
copies. They are involved in protein-protein
interactions. The core of the repeat seems to be an
helix-loop-helix structure.
Length = 30
Score = 38.7 bits (91), Expect = 2e-04
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 73 TPLHWATRQGHLDSVVLLIQHGADPTL 99
TPLH A G+L+ V LL+ GAD
Sbjct: 4 TPLHLAAENGNLEVVKLLLDKGADINA 30
Score = 34.5 bits (80), Expect = 0.005
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 39 TLLHWAAINNRIEIMKYFISQGAIVDA 65
T LH AA N +E++K + +GA ++A
Sbjct: 4 TPLHLAAENGNLEVVKLLLDKGADINA 30
Score = 33.7 bits (78), Expect = 0.010
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 103 EGSTCIHQAAQFGHTRIVAYLVAKGINVNL 132
+G T +H AA+ G+ +V L+ KG ++N
Sbjct: 1 DGRTPLHLAAENGNLEVVKLLLDKGADINA 30
>gnl|CDD|165089 PHA02716, PHA02716, CPXV016; CPX019; EVM010; Provisional.
Length = 764
Score = 41.8 bits (98), Expect = 0.001
Identities = 55/237 (23%), Positives = 87/237 (36%), Gaps = 77/237 (32%)
Query: 25 EAGQDVNEPDSETVTLLHW------------AAINN--RIEIMKYFISQGAIVDAIGGDL 70
E G D+NEPD+ T+LH +N R+++++ IS GA + A+ L
Sbjct: 340 EYGNDLNEPDNIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLISLGADITAV-NCL 398
Query: 71 QATPL--HWATRQGHL----------DSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTR 118
TPL + T Q ++ D V+ +++H L+ T
Sbjct: 399 GYTPLTSYICTAQNYMYYDIIDCLISDKVLNMVKHRILQDLLIRVDDT----------PC 448
Query: 119 IVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIH------- 171
I+ +++AK N T L Y+ + ST I D H
Sbjct: 449 IIHHIIAK--------YNIPTDLYTDEYEPYD------------STKIHDVYHCAIIERY 488
Query: 172 --------GNVALHWAIYAKNHVAITT-----LVSHTSSLEIPNAQGLTPFMLLEEN 215
G LH +I + + I L+S ++ IP G+TP ML N
Sbjct: 489 NNAVCETSGMTPLHVSIISHTNANIVMDSFVYLLSIQYNINIPTKNGVTPLMLTMRN 545
>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat. Ankyrins are multifunctional
adaptors that link specific proteins to the
membrane-associated, spectrin- actin cytoskeleton. This
repeat-domain is a 'membrane-binding' domain of up to
24 repeated units, and it mediates most of the
protein's binding activities.
Length = 30
Score = 36.1 bits (84), Expect = 0.001
Identities = 15/25 (60%), Positives = 19/25 (76%)
Query: 73 TPLHWATRQGHLDSVVLLIQHGADP 97
TPLH A R G+L+ V LL++HGAD
Sbjct: 4 TPLHLAARNGNLELVKLLLEHGADI 28
Score = 35.3 bits (82), Expect = 0.002
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 39 TLLHWAAINNRIEIMKYFISQGAIVDA 65
T LH AA N +E++K + GA ++A
Sbjct: 4 TPLHLAARNGNLELVKLLLEHGADINA 30
Score = 31.5 bits (72), Expect = 0.065
Identities = 10/29 (34%), Positives = 19/29 (65%)
Query: 103 EGSTCIHQAAQFGHTRIVAYLVAKGINVN 131
+G+T +H AA+ G+ +V L+ G ++N
Sbjct: 1 DGNTPLHLAARNGNLELVKLLLEHGADIN 29
>gnl|CDD|165108 PHA02741, PHA02741, hypothetical protein; Provisional.
Length = 169
Score = 38.1 bits (88), Expect = 0.004
Identities = 33/125 (26%), Positives = 50/125 (40%), Gaps = 10/125 (8%)
Query: 101 DSEGSTCIHQAAQFGHTRIVAYLVAKGIN------VNLQDRNGMTALMWSAYK---VFSL 151
+SEG H+AA+ G I+A +N D G + +A K +
Sbjct: 18 NSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAA 77
Query: 152 DPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTS-SLEIPNAQGLTPFM 210
+ LI GA Q+ + G+ ALH A + ++H L L NA +PF
Sbjct: 78 EIIDHLIELGADINAQEMLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFE 137
Query: 211 LLEEN 215
L +N
Sbjct: 138 LAIDN 142
>gnl|CDD|165103 PHA02736, PHA02736, Viral ankyrin protein; Provisional.
Length = 154
Score = 35.6 bits (82), Expect = 0.022
Identities = 18/58 (31%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 155 RLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTS-SLEIPNAQGLTPFML 211
+LL+ +GA ++++ GN LH A+Y +N+ T L + ++EI N TP+ +
Sbjct: 75 KLLMEWGADINGKERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYV 132
Score = 28.3 bits (63), Expect = 6.7
Identities = 17/73 (23%), Positives = 28/73 (38%), Gaps = 1/73 (1%)
Query: 24 VEAGQDVNEPDS-ETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQG 82
+E G D+N + T LH A E+ + +Q + I TP + A +
Sbjct: 78 MEWGADINGKERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVACERH 137
Query: 83 HLDSVVLLIQHGA 95
+ +L GA
Sbjct: 138 DAKMMNILRAKGA 150
>gnl|CDD|165231 PHA02917, PHA02917, ankyrin-like protein; Provisional.
Length = 661
Score = 37.3 bits (86), Expect = 0.025
Identities = 15/58 (25%), Positives = 33/58 (56%)
Query: 84 LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTAL 141
L ++ + + + D ++D G T +H+A ++ +V+ L+ G +VN++ NG T +
Sbjct: 432 LSTINICLPYLKDINMIDKRGETLLHKAVRYNKQSLVSLLLESGSDVNIRSNNGYTCI 489
>gnl|CDD|165154 PHA02791, PHA02791, ankyrin-like protein; Provisional.
Length = 284
Score = 35.8 bits (82), Expect = 0.043
Identities = 25/120 (20%), Positives = 53/120 (44%), Gaps = 3/120 (2%)
Query: 26 AGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLD 85
+ +D + D + L++A +N + ++ ++ GA+ + + + PLH A
Sbjct: 19 SSKDAFKADVHGHSALYYAIADNNVRLVCTLLNAGALKNLLENEF---PLHQAATLEDTK 75
Query: 86 SVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSA 145
V +L+ G D + D +G+T ++ A G+ + V V K + + G + A
Sbjct: 76 IVKILLFSGMDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHA 135
>gnl|CDD|165195 PHA02859, PHA02859, ankyrin repeat protein; Provisional.
Length = 209
Score = 34.8 bits (80), Expect = 0.066
Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Query: 24 VEAGQDVNEPDSETVTLLH--WAAINNRIEIMKYFISQG 60
+++G + E D + LLH N RI ++K I G
Sbjct: 110 IDSGSSITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSG 148
Score = 32.5 bits (74), Expect = 0.39
Identities = 41/220 (18%), Positives = 72/220 (32%), Gaps = 63/220 (28%)
Query: 6 GVKNWYEFELTKVFVGKCVEAGQDVNEP------DSETVTLLHWAAINNRIEIMKYFISQ 59
GVK W +F V D+ E + + V + EI+K+ I
Sbjct: 36 GVKKWIKF----------VNDCNDLYETPIFSCLEKDKVNV----------EILKFLIEN 75
Query: 60 GAIVDAIGGDLQATPLHW---ATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGH 116
GA V+ D + LH + + + +LI G+ T D +G +H
Sbjct: 76 GADVNFKTRDNNLSALHHYLSFNKNVEPEILKILIDSGSSITEEDEDGKNLLHM------ 129
Query: 117 TRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVAL 176
Y+ + +N+ +LLI G S +D N L
Sbjct: 130 -----YMCNFNVRINV---------------------IKLLIDSGVSFLNKDF-DNNNIL 162
Query: 177 H-WAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEEN 215
+ + ++ + L S + N G + L++
Sbjct: 163 YSYILFHSDKKIFDFLTSLGIDINETNKSGYNCYDLIKFR 202
>gnl|CDD|233161 TIGR00870, trp, transient-receptor-potential calcium channel
protein. The Transient Receptor Potential Ca2+ Channel
(TRP-CC) Family (TC. 1.A.4)The TRP-CC family has also
been called the store-operated calcium channel (SOC)
family. The prototypical members include the Drosophila
retinal proteinsTRP and TRPL (Montell and Rubin, 1989;
Hardie and Minke, 1993). SOC members of the family
mediate the entry of extracellular Ca2+ into cells in
responseto depletion of intracellular Ca2+ stores
(Clapham, 1996) and agonist stimulated production of
inositol-1,4,5 trisphosphate (IP3). One member of the
TRP-CCfamily, mammalian Htrp3, has been shown to form a
tight complex with the IP3 receptor (TC #1.A.3.2.1).
This interaction is apparently required for IP3
tostimulate Ca2+ release via Htrp3. The vanilloid
receptor subtype 1 (VR1), which is the receptor for
capsaicin (the ?hot? ingredient in chili peppers) and
servesas a heat-activated ion channel in the pain
pathway (Caterina et al., 1997), is also a member of
this family. The stretch-inhibitable non-selective
cation channel(SIC) is identical to the vanilloid
receptor throughout all of its first 700 residues, but
it exhibits a different sequence in its last 100
residues. VR1 and SICtransport monovalent cations as
well as Ca2+. VR1 is about 10x more permeable to Ca2+
than to monovalent ions. Ca2+ overload probably causes
cell deathafter chronic exposure to capsaicin.
(McCleskey and Gold, 1999) [Transport and binding
proteins, Cations and iron carrying compounds].
Length = 743
Score = 35.1 bits (81), Expect = 0.13
Identities = 52/233 (22%), Positives = 78/233 (33%), Gaps = 57/233 (24%)
Query: 29 DVNEPDSETVTLLHWAAINNR----IEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHL 84
++N PD + L AAI N E++ +GA+ D + LH A ++
Sbjct: 44 NINCPDRLGRSALFVAAIENENLELTELLLNLSCRGAVGDTL--------LH-AISLEYV 94
Query: 85 DSVVLLIQH--------GADPTLMD------SEGSTCIHQAAQFGHTRIVAYLVAKGINV 130
D+V ++ H G D + G T +H AA + IV L+ +G +V
Sbjct: 95 DAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASV 154
Query: 131 NL----------QDRNGM--TALMWSAYKVF-SLDPTRLLITFGASTTIQDKIHGNVALH 177
Q + +A S LL A D + GN LH
Sbjct: 155 PARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDPADILTADSL-GNTLLH 213
Query: 178 WA-IYAKNHVAITTLVS--------------HTSSLE-IPNAQGLTPFMLLEE 214
+ + L + LE I N QGLTP L +
Sbjct: 214 LLVMENEFKAEYEELSCQMYNFALSLLDKLRDSKELEVILNHQGLTPLKLAAK 266
>gnl|CDD|225780 COG3240, COG3240, Phospholipase/lecithinase/hemolysin [Lipid
metabolism / General function prediction only].
Length = 370
Score = 32.9 bits (75), Expect = 0.47
Identities = 25/197 (12%), Positives = 55/197 (27%), Gaps = 27/197 (13%)
Query: 4 WRGVKNWYEFELTKVFVGKCVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIV 63
++ + + +G+ +HWA N+ + + ++
Sbjct: 66 YQNGNGYTYVTVVPETLGQLGVNHDFTYAAADPNGLYIHWAGGND-LAVGGARSTEPNTG 124
Query: 64 DAIGGDLQATPLHWATRQGHLDSVVL---LIQHGADPTLMDSEGSTC------------- 107
++IG + + G DP+ +
Sbjct: 125 NSIGASATSLAQQVGAFLAAGQGGFVWPNYPAQGLDPSALYFLWGGANDYLALPMLKAAA 184
Query: 108 IHQAAQFGHTRIVAY---LVAKG----INVNLQDRNGMTALMWSAYKVFSLDPTRLLITF 160
Q + L+A G + + L D + A + ++ I F
Sbjct: 185 YQQLEGSTKADQSSAVQRLIAAGARNILVMTLPDLSLTPAGKAYGTEAIQA--SQATIAF 242
Query: 161 GASTTIQ-DKIHGNVAL 176
AS T Q +++ GN+
Sbjct: 243 NASLTSQLEQLGGNIIR 259
>gnl|CDD|140318 PTZ00297, PTZ00297, pantothenate kinase; Provisional.
Length = 1452
Score = 32.1 bits (73), Expect = 1.1
Identities = 29/104 (27%), Positives = 41/104 (39%), Gaps = 3/104 (2%)
Query: 118 RIVAYLV-AKGIN-VNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHG-NV 174
YL + IN Q R + A A+K S+ L I F + + G N+
Sbjct: 1120 DFADYLAGSHAINYYKPQYRTKVRATGGGAFKYASVAKKVLGINFSVMREMDAVVKGLNL 1179
Query: 175 ALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGA 218
+ A + V +T V H L P G +PF L NIG+
Sbjct: 1180 VIRVAPESIFTVDPSTGVHHPHQLVSPPGDGFSPFPCLLVNIGS 1223
>gnl|CDD|165256 PHA02946, PHA02946, ankyin-like protein; Provisional.
Length = 446
Score = 31.6 bits (71), Expect = 1.1
Identities = 37/148 (25%), Positives = 63/148 (42%), Gaps = 16/148 (10%)
Query: 74 PLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRI--VAYLVAKGINVN 131
PLH A++ + V +L+ HGADP D + T ++ + I + LV G +N
Sbjct: 75 PLHIASKINNNRIVAMLLTHGADPNACDKQHKTPLYYLSGTDDEVIERINLLVQYGAKIN 134
Query: 132 LQ-DRNGMTALMWSAYKVFSLDPT----RLLITFGASTTIQDKIHGNVALHWAIYAKNHV 186
D G L+ DP+ + +++ G I DK G +H + + N
Sbjct: 135 NSVDEEGCGPLLACT------DPSERVFKKIMSIGFEARIVDKF-GKNHIHRHLMSDNPK 187
Query: 187 A--ITTLVSHTSSLEIPNAQGLTPFMLL 212
A I+ ++ S P+ G TP ++
Sbjct: 188 ASTISWMMKLGISPSKPDHDGNTPLHIV 215
Score = 30.4 bits (68), Expect = 2.7
Identities = 50/206 (24%), Positives = 86/206 (41%), Gaps = 14/206 (6%)
Query: 15 LTKVFVGKCVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATP 74
L + FV + + G NE D + LH A+ N I+ ++ GA +A TP
Sbjct: 50 LDERFVEELLHRGYSPNETDDDGNYPLHIASKINNNRIVAMLLTHGADPNACDKQ-HKTP 108
Query: 75 LHW--ATRQGHLDSVVLLIQHGAD-PTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVN 131
L++ T ++ + LL+Q+GA +D EG + A R+ +++ G
Sbjct: 109 LYYLSGTDDEVIERINLLVQYGAKINNSVDEEGCGPL-LACTDPSERVFKKIMSIGFEAR 167
Query: 132 LQDRNGMTALMWSAYKVFSLDPTRLLITF----GASTTIQDKIHGNVALHWAIYAK-NHV 186
+ D+ G + + S +P I++ G S + D GN LH +V
Sbjct: 168 IVDKFGKNHIH---RHLMSDNPKASTISWMMKLGISPSKPDH-DGNTPLHIVCSKTVKNV 223
Query: 187 AITTLVSHTSSLEIPNAQGLTPFMLL 212
I L+ ++ + N G +P LL
Sbjct: 224 DIINLLLPSTDVNKQNKFGDSPLTLL 249
>gnl|CDD|165157 PHA02795, PHA02795, ankyrin-like protein; Provisional.
Length = 437
Score = 31.1 bits (70), Expect = 1.6
Identities = 18/53 (33%), Positives = 29/53 (54%)
Query: 89 LLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTAL 141
L I + D +D+ G T +++A G+ +V++L+ G NVN NG T L
Sbjct: 206 LCIPYIEDINQLDAGGRTLLYRAIYAGYIDLVSWLLENGANVNAVMSNGYTCL 258
Score = 30.0 bits (67), Expect = 4.0
Identities = 13/47 (27%), Positives = 27/47 (57%)
Query: 23 CVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGD 69
C+ +D+N+ D+ TLL+ A I+++ + + GA V+A+ +
Sbjct: 207 CIPYIEDINQLDAGGRTLLYRAIYAGYIDLVSWLLENGANVNAVMSN 253
>gnl|CDD|220496 pfam09972, DUF2207, Predicted membrane protein (DUF2207). This
domain, found in various hypothetical bacterial
proteins, has no known function.
Length = 503
Score = 31.2 bits (71), Expect = 1.6
Identities = 7/91 (7%), Positives = 25/91 (27%), Gaps = 5/91 (5%)
Query: 218 APWLGKATVDKITELKDHYNTQQNIIHRFSKSKTTRARYMFALPFVMFGLIGFIFQAQIA 277
+ KA +K + + + + ++ I
Sbjct: 362 SKSFAKAFKKWQKSVKKEADRKGLFDNYRYLKMGSLLGLSILTLIILILSFILIS----- 416
Query: 278 YMAKLALFISLYIVMQVIGTVMFDERLFKIL 308
+ + +++ +V+ + + +LF
Sbjct: 417 LVLAALVLLAIVLVIGSVIAAILPRKLFGRW 447
>gnl|CDD|201366 pfam00641, zf-RanBP, Zn-finger in Ran binding protein and others.
Length = 29
Score = 26.9 bits (60), Expect = 2.6
Identities = 8/18 (44%), Positives = 9/18 (50%)
Query: 388 CSTCLVRKPIRSKHCSIC 405
CS CLV+ S C C
Sbjct: 6 CSKCLVQNFATSTKCVAC 23
>gnl|CDD|237042 PRK12291, PRK12291, apolipoprotein N-acyltransferase; Reviewed.
Length = 418
Score = 29.9 bits (68), Expect = 3.9
Identities = 24/110 (21%), Positives = 51/110 (46%), Gaps = 25/110 (22%)
Query: 255 RYMFALPFVMFGLIG-FIFQAQIAYMAKLALFISLYIVMQVIGTVMFDERLFKILPLP-- 311
R F + F++ G + +F I Y++ +IS+++ + ++ L+ +L P
Sbjct: 6 RTNFLIFFIIKGFLIAILFSNFI-YLSFFENYISIFLSS--LLALLG---LYLLLKSPRN 59
Query: 312 VYFATKFWIYITWLFWI------------TPVVNFFVSLLFFSTSGVLWY 349
FA+ F++ I W +WI P++ + L++ G+L+Y
Sbjct: 60 SAFASGFFVGILWFYWIGLSFRYYDLTYLIPLIIILIGLVY----GLLFY 105
>gnl|CDD|216929 pfam02207, zf-UBR, Putative zinc finger in N-recognin (UBR box).
This region is found in E3 ubiquitin ligases that
recognise N-recognins.
Length = 71
Score = 27.3 bits (61), Expect = 4.0
Identities = 13/60 (21%), Positives = 17/60 (28%), Gaps = 17/60 (28%)
Query: 383 EPLSFCSTCLVRKPIRSKHCSICNRCVAKFDHHCPWVGNCIGAKNHKYFVGYISSLLFMC 442
+P+ C TC + C IC C + H K H S C
Sbjct: 11 QPVYRCLTCSL-----DPTCVICYECFSISCH-----------KGHDVVE-LFSKRGGCC 53
>gnl|CDD|197545 smart00154, ZnF_AN1, AN1-like Zinc finger. Zinc finger at the
C-terminus of An1, a ubiquitin-like protein in Xenopus
laevis.
Length = 39
Score = 26.6 bits (59), Expect = 4.4
Identities = 9/36 (25%), Positives = 11/36 (30%), Gaps = 5/36 (13%)
Query: 388 CSTCLVRKPIRSKHCSICNR--CVAKF---DHHCPW 418
C C + + C C C DH CP
Sbjct: 1 CHFCRKKVGLTGFKCRHCGNLFCGEHRLPEDHDCPG 36
>gnl|CDD|112398 pfam03579, SHP, Small hydrophobic protein. The small hydrophobic
integral membrane protein, SH (previously designated 1A)
is found to have a variety of glycosylated forms. This
protein is a component of the mature virion.
Length = 64
Score = 27.2 bits (60), Expect = 4.8
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 314 FATKFWIYITWLFWITPVVNFFV 336
F +KFW Y T + I +++F +
Sbjct: 10 FTSKFWPYFTLVHMILTIISFLI 32
>gnl|CDD|165098 PHA02730, PHA02730, ankyrin-like protein; Provisional.
Length = 672
Score = 29.6 bits (66), Expect = 5.9
Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
Query: 29 DVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWAT--RQGHLDS 86
D++ D+E TLL++A N I+ + + GA V+ + T + ++ R+
Sbjct: 454 DIDMIDNENKTLLYYAVDVNNIQFARRLLEYGASVNTTSRSIINTAIQKSSYRRENKTKL 513
Query: 87 VVLLIQHGADPTL 99
V LL+ + PTL
Sbjct: 514 VDLLLSY--HPTL 524
>gnl|CDD|233974 TIGR02682, cas_csx11, CRISPR-associated protein, Csx11 family.
Members of this uncommon, sporadically distributed
protein family are large (>900 amino acids) and strictly
associated, so far, with CRISPR-associated (Cas) gene
clusters. Nearby Cas genes always include members of the
RAMP superfamily and the six-gene CRISPR-associated RAMP
module. Species in which it is found, so far, include
three archaea (Methanosarcina mazei, M. barkeri and
Methanobacterium thermoautotrophicum) and two bacteria
(Thermodesulfovibrio yellowstonii DSM 11347 and
Sulfurihydrogenibium azorense) [Mobile and
extrachromosomal element functions, Other].
Length = 918
Score = 29.1 bits (65), Expect = 7.7
Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 2/34 (5%)
Query: 326 FWITPVVNFFV--SLLFFSTSGVLWYNFIKCWKG 357
W + + N + L S W NFIK W+G
Sbjct: 53 CWKSALKNSKIDFRLEVNSKEFETWDNFIKKWRG 86
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.328 0.140 0.461
Gapped
Lambda K H
0.267 0.0786 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 30,093,401
Number of extensions: 2959115
Number of successful extensions: 4307
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4177
Number of HSP's successfully gapped: 186
Length of query: 584
Length of database: 10,937,602
Length adjustment: 102
Effective length of query: 482
Effective length of database: 6,413,494
Effective search space: 3091304108
Effective search space used: 3091304108
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 62 (27.6 bits)