RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9492
(584 letters)
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats,
methyllyine binding, huntingti interacting protein 14,
acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo
sapiens}
Length = 240
Score = 238 bits (611), Expect = 2e-75
Identities = 110/189 (58%), Positives = 144/189 (76%), Gaps = 2/189 (1%)
Query: 24 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 83
VEAG DV +PD E VTLLHWAAINNRI+++KY+IS+GAIVD +GGDL +TPLHWATRQGH
Sbjct: 29 VEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGH 88
Query: 84 LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMW 143
L VV L+++GADP+L+D EG +CIH AAQFGHT IVAYL+AKG +V++ D+NGMT LMW
Sbjct: 89 LSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMW 148
Query: 144 SAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPN 202
+AY+ S+DPTRLL+TF S + DK H N ALHWA+ + + L+ ++++ N
Sbjct: 149 AAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVL-AGNTTVISLLLEAGANVDAQN 207
Query: 203 AQGLTPFML 211
+G + L
Sbjct: 208 IKGESALDL 216
Score = 154 bits (392), Expect = 1e-43
Identities = 42/182 (23%), Positives = 68/182 (37%), Gaps = 6/182 (3%)
Query: 30 VNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVL 89
+ D + + A E + + G V + T LHWA +D V
Sbjct: 2 MTHIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENV-TLLHWAAINNRIDLVKY 60
Query: 90 LIQHGADPTLMDSE-GSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKV 148
I GA + + ST +H A + GH +V L+ G + +L D G + + +A
Sbjct: 61 YISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQF- 119
Query: 149 FSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIP-NAQGL 206
LI G + D+ +G L WA Y + V T L++ S+ +
Sbjct: 120 GHTSIVAYLIAKGQDVDMMDQ-NGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKN 178
Query: 207 TP 208
T
Sbjct: 179 TA 180
Score = 154 bits (392), Expect = 2e-43
Identities = 47/175 (26%), Positives = 75/175 (42%), Gaps = 8/175 (4%)
Query: 24 VEAGQDVNEPDSET-VTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQG 82
+ G V++ + T LHWA + ++ + GA I G+ + +H A + G
Sbjct: 62 ISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGE-GCSCIHLAAQFG 120
Query: 83 HLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTR-IVAYLVAKGINVNLQDR-NGMTA 140
H V LI G D +MD G T + AA H+ L+ ++VNL D+ + TA
Sbjct: 121 HTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTA 180
Query: 141 LMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSH 194
L W+ + LL+ GA+ Q+ G AL A + +V + L
Sbjct: 181 LHWAVLAG-NTTVISLLLEAGANVDAQNI-KGESALDLAKQ-RKNVWMINHLQEA 232
Score = 135 bits (343), Expect = 1e-36
Identities = 37/141 (26%), Positives = 63/141 (44%), Gaps = 4/141 (2%)
Query: 24 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 83
++ G D + D E + +H AA I+ Y I++G VD + + TPL WA + H
Sbjct: 96 MKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGM-TPLMWAAYRTH 154
Query: 84 LDSVV-LLIQHGADPTLMD-SEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTAL 141
LL+ L D +T +H A G+T +++ L+ G NV+ Q+ G +AL
Sbjct: 155 SVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESAL 214
Query: 142 MWSAYKVFSLDPTRLLITFGA 162
+ + ++ L
Sbjct: 215 DLAKQRK-NVWMINHLQEARQ 234
Score = 129 bits (327), Expect = 2e-34
Identities = 35/141 (24%), Positives = 61/141 (43%), Gaps = 5/141 (3%)
Query: 73 TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 132
+ AT+ G + L++ G D D E T +H AA +V Y ++KG V+
Sbjct: 11 WDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQ 70
Query: 133 QDRN-GMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITT- 190
+ T L W+ + L L+ +GA ++ D G +H A H +I
Sbjct: 71 LGGDLNSTPLHWATRQG-HLSMVVQLMKYGADPSLIDG-EGCSCIHLAAQ-FGHTSIVAY 127
Query: 191 LVSHTSSLEIPNAQGLTPFML 211
L++ +++ + G+TP M
Sbjct: 128 LIAKGQDVDMMDQNGMTPLMW 148
Score = 117 bits (296), Expect = 3e-30
Identities = 25/109 (22%), Positives = 49/109 (44%), Gaps = 1/109 (0%)
Query: 24 VEAGQDVNEPDSETVTLLHWAAIN-NRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQG 82
+ GQDV+ D +T L WAA + ++ + ++ V+ + T LHWA G
Sbjct: 129 IAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAG 188
Query: 83 HLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVN 131
+ + LL++ GA+ + +G + + A Q + ++ +L
Sbjct: 189 NTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQAKG 237
Score = 96.7 bits (242), Expect = 7e-23
Identities = 26/113 (23%), Positives = 49/113 (43%), Gaps = 3/113 (2%)
Query: 100 MDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLIT 159
+D + I +A Q+G LV G +V D+ +T L W+A +D + I+
Sbjct: 5 IDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAIN-NRIDLVKYYIS 63
Query: 160 FGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTPFML 211
GA + LHWA + H+++ L+ + + + + +G + L
Sbjct: 64 KGAIVDQLGGDLNSTPLHWATR-QGHLSMVVQLMKYGADPSLIDGEGCSCIHL 115
Score = 51.7 bits (125), Expect = 1e-07
Identities = 12/67 (17%), Positives = 22/67 (32%), Gaps = 4/67 (5%)
Query: 129 NVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAI 188
++ D ++ + + R L+ G DK LHWA N + +
Sbjct: 1 HMTHIDDYSTWDIVKATQY-GIYERCRELVEAGYDVRQPDK-ENVTLLHWAAI-NNRIDL 57
Query: 189 T-TLVSH 194
+S
Sbjct: 58 VKYYISK 64
Score = 47.4 bits (114), Expect = 4e-06
Identities = 6/42 (14%), Positives = 16/42 (38%)
Query: 24 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDA 65
+EAG +V+ + + + L A + ++ +
Sbjct: 197 LEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQAKGY 238
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein;
2.70A {Homo sapiens} SCOP: d.211.1.1
Length = 437
Score = 178 bits (455), Expect = 2e-50
Identities = 50/186 (26%), Positives = 76/186 (40%), Gaps = 5/186 (2%)
Query: 27 GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDS 86
G +T LH A+ + I+K + +GA + ++ TPLH A R GH +
Sbjct: 4 GISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVE-TPLHMAARAGHTEV 62
Query: 87 VVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAY 146
L+Q+ A + T +H AA+ GHT +V L+ N NL G T L +A
Sbjct: 63 AKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAR 122
Query: 147 KVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQG 205
+ ++ L+ AS K G LH A V + L+ + G
Sbjct: 123 EG-HVETVLALLEKEASQACMTK-KGFTPLHVAAK-YGKVRVAELLLERDAHPNAAGKNG 179
Query: 206 LTPFML 211
LTP +
Sbjct: 180 LTPLHV 185
Score = 178 bits (455), Expect = 2e-50
Identities = 59/189 (31%), Positives = 87/189 (46%), Gaps = 5/189 (2%)
Query: 24 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 83
++ G N + + T LH AA E+ KY + A V+A D Q TPLH A R GH
Sbjct: 34 LQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQ-TPLHCAARIGH 92
Query: 84 LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMW 143
+ V LL+++ A+P L + G T +H AA+ GH V L+ K + + G T L
Sbjct: 93 TNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHV 152
Query: 144 SAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITT-LVSHTSSLEIPN 202
+A + LL+ A K +G LH A++ N++ I L+ S P
Sbjct: 153 AAKY-GKVRVAELLLERDAHPNAAGK-NGLTPLHVAVH-HNNLDIVKLLLPRGGSPHSPA 209
Query: 203 AQGLTPFML 211
G TP +
Sbjct: 210 WNGYTPLHI 218
Score = 174 bits (444), Expect = 7e-49
Identities = 49/189 (25%), Positives = 80/189 (42%), Gaps = 5/189 (2%)
Query: 24 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 83
+E + N + T LH AA +E + + + A + TPLH A + G
Sbjct: 100 LENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKK-GFTPLHVAAKYGK 158
Query: 84 LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMW 143
+ LL++ A P G T +H A + IV L+ +G + + NG T L
Sbjct: 159 VRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHI 218
Query: 144 SAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPN 202
+A + ++ R L+ +G S + G LH A + H + L+S ++ + N
Sbjct: 219 AAKQN-QVEVARSLLQYGGSANAESV-QGVTPLHLAAQ-EGHAEMVALLLSKQANGNLGN 275
Query: 203 AQGLTPFML 211
GLTP L
Sbjct: 276 KSGLTPLHL 284
Score = 173 bits (442), Expect = 1e-48
Identities = 49/189 (25%), Positives = 85/189 (44%), Gaps = 5/189 (2%)
Query: 24 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 83
+E N +T LH A +N ++I+K + +G + + TPLH A +Q
Sbjct: 166 LERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWN-GYTPLHIAAKQNQ 224
Query: 84 LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMW 143
++ L+Q+G +G T +H AAQ GH +VA L++K N NL +++G+T L
Sbjct: 225 VEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHL 284
Query: 144 SAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPN 202
A + + +LI G + G LH A + ++ + L+ H + +
Sbjct: 285 VAQEG-HVPVADVLIKHGVMVDATTR-MGYTPLHVASH-YGNIKLVKFLLQHQADVNAKT 341
Query: 203 AQGLTPFML 211
G +P
Sbjct: 342 KLGYSPLHQ 350
Score = 172 bits (439), Expect = 5e-48
Identities = 51/189 (26%), Positives = 85/189 (44%), Gaps = 5/189 (2%)
Query: 24 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 83
+ G + P T LH AA N++E+ + + G +A TPLH A ++GH
Sbjct: 199 LPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQ-GVTPLHLAAQEGH 257
Query: 84 LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMW 143
+ V LL+ A+ L + G T +H AQ GH + L+ G+ V+ R G T L
Sbjct: 258 AEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHV 317
Query: 144 SAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPN 202
+++ ++ + L+ A + K G LH A + H I L+ + +S +
Sbjct: 318 ASHY-GNIKLVKFLLQHQADVNAKTK-LGYSPLHQAAQ-QGHTDIVTLLLKNGASPNEVS 374
Query: 203 AQGLTPFML 211
+ G TP +
Sbjct: 375 SDGTTPLAI 383
Score = 154 bits (391), Expect = 2e-41
Identities = 44/157 (28%), Positives = 65/157 (41%), Gaps = 6/157 (3%)
Query: 24 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 83
+ + N + +T LH A + + I G +VDA TPLH A+ G+
Sbjct: 265 LSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGY-TPLHVASHYGN 323
Query: 84 LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMW 143
+ V L+QH AD G + +HQAAQ GHT IV L+ G + N +G T L
Sbjct: 324 IKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAI 383
Query: 144 SAYKVFSLDPTRLLITF---GASTTIQDKIHGNVALH 177
+ + T +L + + DK H
Sbjct: 384 AKRL-GYISVTDVLKVVTDETSFVLVSDK-HRMSFPE 418
Score = 141 bits (359), Expect = 5e-37
Identities = 45/155 (29%), Positives = 69/155 (44%), Gaps = 5/155 (3%)
Query: 58 SQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHT 117
S G G TPLH A+ GHL V L+Q GA P + + + T +H AA+ GHT
Sbjct: 2 SPGISGGGGGES-GLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHT 60
Query: 118 RIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALH 177
+ YL+ VN + ++ T L +A + +LL+ A+ + G+ LH
Sbjct: 61 EVAKYLLQNKAKVNAKAKDDQTPLHCAARIG-HTNMVKLLLENNANPNLATT-AGHTPLH 118
Query: 178 WAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTPFML 211
A + HV L+ +S +G TP +
Sbjct: 119 IAAR-EGHVETVLALLEKEASQACMTKKGFTPLHV 152
Score = 54.4 bits (132), Expect = 5e-08
Identities = 12/77 (15%), Positives = 22/77 (28%), Gaps = 13/77 (16%)
Query: 24 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKY---FISQGAIVDAIGGDLQATPLHWATR 80
++ G NE S+ T L A I + + + V R
Sbjct: 364 LKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKH----------R 413
Query: 81 QGHLDSVVLLIQHGADP 97
++V ++ D
Sbjct: 414 MSFPETVDEILDVSEDE 430
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat,
alternative splicing, ANK repeat, chromatin regulator,
nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP:
k.37.1.1 PDB: 3b95_A*
Length = 237
Score = 171 bits (436), Expect = 9e-50
Identities = 60/182 (32%), Positives = 92/182 (50%), Gaps = 6/182 (3%)
Query: 29 DVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVV 88
+ + LH AA ++I + GA +D D + TPL A HL++V
Sbjct: 3 NFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQR-TPLMEAAENNHLEAVK 61
Query: 89 LLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKG-INVNLQDRNGMTALMWSAYK 147
LI+ GA D+EGSTC+H AA+ GH +V YL++ G ++VN QD G T ++W+
Sbjct: 62 YLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEY 121
Query: 148 VFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGL 206
+D +LL++ G+ I+D N+ LHWA + V I L++ L N G
Sbjct: 122 K-HVDLVKLLLSKGSDINIRDN-EENICLHWAAF-SGCVDIAEILLAAKCDLHAVNIHGD 178
Query: 207 TP 208
+P
Sbjct: 179 SP 180
Score = 161 bits (411), Expect = 3e-46
Identities = 55/190 (28%), Positives = 91/190 (47%), Gaps = 6/190 (3%)
Query: 24 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 83
V+AG +++ + T L AA NN +E +KY I GA+VD + T LH A ++GH
Sbjct: 31 VQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGS-TCLHLAAKKGH 89
Query: 84 LDSVVLLIQHGA-DPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALM 142
+ V L+ +G D D G T + A ++ H +V L++KG ++N++D L
Sbjct: 90 YEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLH 149
Query: 143 WSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITT-LVSHTSSLEIP 201
W+A+ +D +L+ + HG+ LH A +N +S S + +
Sbjct: 150 WAAFS-GCVDIAEILLAAKCDLHAVNI-HGDSPLHIAAR-ENRYDCVVLFLSRDSDVTLK 206
Query: 202 NAQGLTPFML 211
N +G TP
Sbjct: 207 NKEGETPLQC 216
Score = 159 bits (406), Expect = 1e-45
Identities = 48/173 (27%), Positives = 83/173 (47%), Gaps = 6/173 (3%)
Query: 24 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAI-VDAIGGDLQATPLHWATRQG 82
++AG V+ D+E T LH AA E+++Y +S G + V+ TP+ WAT
Sbjct: 64 IKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDG-GWTPMIWATEYK 122
Query: 83 HLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALM 142
H+D V LL+ G+D + D+E + C+H AA G I L+A +++ + +G + L
Sbjct: 123 HVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLH 182
Query: 143 WSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITT-LVSH 194
+A + D L ++ + T+++K G L A + V +
Sbjct: 183 IAARE-NRYDCVVLFLSRDSDVTLKNK-EGETPLQCASL-NSQVWSALQMSKA 232
Score = 123 bits (311), Expect = 3e-32
Identities = 39/141 (27%), Positives = 62/141 (43%), Gaps = 5/141 (3%)
Query: 73 TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 132
+PLH A GH+D +L+Q GA+ + T + +AA+ H V YL+ G V+
Sbjct: 13 SPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDP 72
Query: 133 QDRNGMTALMWSAYKVFSLDPTRLLITFGAST-TIQDKIHGNVALHWAIYAKNHVAIT-T 190
+D G T L +A K + + L++ G QD G + WA HV +
Sbjct: 73 KDAEGSTCLHLAAKKG-HYEVVQYLLSNGQMDVNCQDD-GGWTPMIWATE-YKHVDLVKL 129
Query: 191 LVSHTSSLEIPNAQGLTPFML 211
L+S S + I + +
Sbjct: 130 LLSKGSDINIRDNEENICLHW 150
Score = 115 bits (292), Expect = 1e-29
Identities = 28/106 (26%), Positives = 48/106 (45%), Gaps = 1/106 (0%)
Query: 24 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 83
+ G D+N D+E LHWAA + ++I + ++ + A+ +PLH A R+
Sbjct: 131 LSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGD-SPLHIAARENR 189
Query: 84 LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGIN 129
D VVL + +D TL + EG T + A+ + +
Sbjct: 190 YDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSKALQD 235
Score = 84.0 bits (209), Expect = 1e-18
Identities = 31/113 (27%), Positives = 48/113 (42%), Gaps = 5/113 (4%)
Query: 101 DSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITF 160
+ +H AA+ GH I LV G N++ + T LM +A L+ + LI
Sbjct: 8 HQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAEN-NHLEAVKYLIKA 66
Query: 161 GASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSH-TSSLEIPNAQGLTPFML 211
GA +D G+ LH A K H + L+S+ + + G TP +
Sbjct: 67 GALVDPKDA-EGSTCLHLAAK-KGHYEVVQYLLSNGQMDVNCQDDGGWTPMIW 117
Score = 57.8 bits (141), Expect = 1e-09
Identities = 17/85 (20%), Positives = 35/85 (41%), Gaps = 4/85 (4%)
Query: 128 INVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVA 187
+N ++ +N + L +A +D +L+ GA+ + L A NH+
Sbjct: 2 MNFKMEHQNKRSPLHAAAEAG-HVDICHMLVQAGANIDTCSE-DQRTPLMEAAE-NNHLE 58
Query: 188 IT-TLVSHTSSLEIPNAQGLTPFML 211
L+ + ++ +A+G T L
Sbjct: 59 AVKYLIKAGALVDPKDAEGSTCLHL 83
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC,
rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens}
PDB: 3uxg_A
Length = 172
Score = 159 bits (405), Expect = 3e-46
Identities = 39/171 (22%), Positives = 77/171 (45%), Gaps = 4/171 (2%)
Query: 39 TLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPT 98
+H A ++ +K + +G + + TPL WA+ G +++V L++ GADP
Sbjct: 4 LSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPH 63
Query: 99 LMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLI 158
++ E + + A+ G+T IV L+ + +++N+ D NG T L+++ + L+
Sbjct: 64 ILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGN-HVKCVEALL 122
Query: 159 TFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTP 208
GA T + G + A+ + + + +H L N P
Sbjct: 123 ARGADLTTEAD-SGYTPMDLAVA-LGYRKVQQVIENHILKLFQSNLVPADP 171
Score = 145 bits (369), Expect = 4e-41
Identities = 32/147 (21%), Positives = 64/147 (43%), Gaps = 3/147 (2%)
Query: 24 VEAGQD-VNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQG 82
+ G + VN+PD T L WA+ IE +++ + GA + + + + L A+ G
Sbjct: 22 LRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERE-SALSLASTGG 80
Query: 83 HLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALM 142
+ D V LL++ D + D G T + A + H + V L+A+G ++ + +G T +
Sbjct: 81 YTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMD 140
Query: 143 WSAYKVFSLDPTRLLITFGASTTIQDK 169
+ +++ +
Sbjct: 141 LAVALG-YRKVQQVIENHILKLFQSNL 166
Score = 132 bits (335), Expect = 2e-36
Identities = 23/116 (19%), Positives = 45/116 (38%), Gaps = 1/116 (0%)
Query: 24 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 83
+E G D + E + L A+ +I+ + + ++ + TPL +A R H
Sbjct: 56 LEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGG-TPLLYAVRGNH 114
Query: 84 LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMT 139
+ V L+ GAD T G T + A G+ ++ + + + +
Sbjct: 115 VKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHILKLFQSNLVPAD 170
Score = 84.0 bits (209), Expect = 4e-19
Identities = 31/107 (28%), Positives = 44/107 (41%), Gaps = 5/107 (4%)
Query: 104 GSTCIHQAAQFGHTRIVAYLVAKGIN-VNLQDRNGMTALMWSAYKVFSLDPTRLLITFGA 162
S IHQ A G + + KG N VN D G T L+W++ ++ R L+ +GA
Sbjct: 2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFG-EIETVRFLLEWGA 60
Query: 163 STTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTP 208
I K AL A + I L+ + I + G TP
Sbjct: 61 DPHILAK-ERESALSLAST-GGYTDIVGLLLERDVDINIYDWNGGTP 105
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A;
1.80A {Homo sapiens} SCOP: d.211.1.1
Length = 285
Score = 163 bits (414), Expect = 3e-46
Identities = 50/184 (27%), Positives = 80/184 (43%), Gaps = 13/184 (7%)
Query: 39 TLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPT 98
LL A N +++++ + GA V+ + TPLH A + D V LL++HGADP
Sbjct: 7 HLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPV 66
Query: 99 LMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLI 158
L G+T AA G +++ ++KG +VN D G TA M +A + + L
Sbjct: 67 LRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVY-GKVKALKFLY 125
Query: 159 TFGASTTIQDK---------IHGNVALHWAIYAKNHVAIT-TLVSHT-SSLEIPNAQGLT 207
GA+ ++ K G AL A K HV + L+ + + + G
Sbjct: 126 KRGANVNLRRKTKEDQERLRKGGATALMDAAE-KGHVEVLKILLDEMGADVNACDNMGRN 184
Query: 208 PFML 211
+
Sbjct: 185 ALIH 188
Score = 151 bits (385), Expect = 4e-42
Identities = 46/204 (22%), Positives = 82/204 (40%), Gaps = 19/204 (9%)
Query: 24 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 83
+ G D T AAI ++++K F+S+GA V+ T A G
Sbjct: 59 LRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGF-TAFMEAAVYGK 117
Query: 84 LDSVVLLIQHGAD----------PTLMDSEGSTCIHQAAQFGHTRIVAYLVAK-GINVNL 132
+ ++ L + GA+ + G+T + AA+ GH ++ L+ + G +VN
Sbjct: 118 VKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNA 177
Query: 133 QDRNGMTALMWSAY---KVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT 189
D G AL+ + T LL+ GA ++ + G L A+ K H+ +
Sbjct: 178 CDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGE-RGKTPLILAVE-KKHLGLV 235
Query: 190 -TLVSHT-SSLEIPNAQGLTPFML 211
L+ + ++ G T +L
Sbjct: 236 QRLLEQEHIEINDTDSDGKTALLL 259
Score = 144 bits (365), Expect = 3e-39
Identities = 43/187 (22%), Positives = 70/187 (37%), Gaps = 19/187 (10%)
Query: 24 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQA---------TP 74
+ G DVNE D T AA+ +++ +K+ +GA V+ + T
Sbjct: 92 LSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATA 151
Query: 75 LHWATRQGHLDSVVLLIQH-GADPTLMDSEGSTCIHQAAQFGHTR----IVAYLVAKGIN 129
L A +GH++ + +L+ GAD D+ G + A I L+ G +
Sbjct: 152 LMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGAD 211
Query: 130 VNLQDRNGMTALMWSAYKVFSLDPTRLLIT-FGASTTIQDKIHGNVALHWAIYAKNHVAI 188
VN++ G T L+ + K L + L+ D G AL A+ I
Sbjct: 212 VNVRGERGKTPLILAVEK-KHLGLVQRLLEQEHIEINDTDS-DGKTALLLAVE-LKLKKI 268
Query: 189 T-TLVSH 194
L
Sbjct: 269 AELLCKR 275
Score = 128 bits (325), Expect = 1e-33
Identities = 39/150 (26%), Positives = 59/150 (39%), Gaps = 8/150 (5%)
Query: 27 GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQ-GAIVDAIGGDLQATPLHWATRQGHLD 85
+D T L AA +E++K + + GA V+A + L A
Sbjct: 138 KEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGR-NALIHALLSSDDS 196
Query: 86 S----VVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAK-GINVNLQDRNGMTA 140
LL+ HGAD + G T + A + H +V L+ + I +N D +G TA
Sbjct: 197 DVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTA 256
Query: 141 LMWSAYKVFSLDPTRLLITFGASTTIQDKI 170
L+ + LL GAST D +
Sbjct: 257 LLLAVEL-KLKKIAELLCKRGASTDCGDLV 285
Score = 113 bits (285), Expect = 3e-28
Identities = 32/115 (27%), Positives = 48/115 (41%), Gaps = 6/115 (5%)
Query: 25 EAGQDVNEPDSETVTLLHWAAINNRI----EIMKYFISQGAIVDAIGGDLQATPLHWATR 80
E G DVN D+ L A +++ I + GA V+ G + TPL A
Sbjct: 170 EMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGK-TPLILAVE 228
Query: 81 QGHLDSV-VLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQD 134
+ HL V LL Q + DS+G T + A + +I L +G + + D
Sbjct: 229 KKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGD 283
Score = 90.2 bits (225), Expect = 3e-20
Identities = 27/113 (23%), Positives = 43/113 (38%), Gaps = 5/113 (4%)
Query: 101 DSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRN-GMTALMWSAYKVFSLDPTRLLIT 159
E + + +A Q +V L+ G NVN Q+ G T L + D LL+
Sbjct: 2 AVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMS-REDIVELLLR 60
Query: 160 FGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTPFML 211
GA ++ K +G A V + +S + + + G T FM
Sbjct: 61 HGADPVLRKK-NGATPFLLAAI-AGSVKLLKLFLSKGADVNECDFYGFTAFME 111
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Length = 285
Score = 163 bits (414), Expect = 4e-46
Identities = 34/185 (18%), Positives = 72/185 (38%), Gaps = 9/185 (4%)
Query: 26 AGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLD 85
+ +D + D + ++A +N + ++ ++ GA+ + + + PLH A
Sbjct: 20 SSKDTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLLENE---FPLHQAATLEDTK 76
Query: 86 SVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNG-MTALMWS 144
V +L+ G D + D +G+T ++ A G+ + V V K + + G T+ +
Sbjct: 77 IVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHA 136
Query: 145 AYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPNA 203
+ ++ S D +H I HV + L+ + +S N+
Sbjct: 137 VMLN-DVSIVSYFLSEIPS--TFDLAILLSCIHITIK-NGHVDMMILLLDYMTSTNTNNS 192
Query: 204 QGLTP 208
P
Sbjct: 193 LLFIP 197
Score = 153 bits (388), Expect = 2e-42
Identities = 22/187 (11%), Positives = 60/187 (32%), Gaps = 13/187 (6%)
Query: 24 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 83
+ +G D ++ D + T L++A + ++ +K F+ + + G T + A
Sbjct: 82 LFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLND 141
Query: 84 LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMT-ALM 142
+ V + + +CIH + GH ++ L+ + N + +
Sbjct: 142 VSIVSYFLSEIPSTF-DLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIK 200
Query: 143 WSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIP 201
+ ++ + L + + A + + I ++ +
Sbjct: 201 LAIDN-KDIEMLQALFKYDIN--------IYSANLENVL-LDDAEIAKMIIEKHVEYKSD 250
Query: 202 NAQGLTP 208
+
Sbjct: 251 SYTKDLD 257
Score = 111 bits (280), Expect = 2e-27
Identities = 8/113 (7%), Positives = 30/113 (26%), Gaps = 7/113 (6%)
Query: 29 DVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVV 88
+ ++ +H N +++M + + L + A ++ +
Sbjct: 153 PSTFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQ 212
Query: 89 LLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTAL 141
L ++ + + + I ++ K + +
Sbjct: 213 ALFKYDINI-------YSANLENVLLDDAEIAKMIIEKHVEYKSDSYTKDLDI 258
Score = 94.5 bits (236), Expect = 9e-22
Identities = 26/141 (18%), Positives = 44/141 (31%), Gaps = 10/141 (7%)
Query: 73 TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 132
T + + D D G + + A + R+V L+ G NL
Sbjct: 3 DLSRINT--WKSKQLKSFLS-SKDTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNL 59
Query: 133 QDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TL 191
+ L +A ++L+ G + D GN AL++A+ ++
Sbjct: 60 LE--NEFPLHQAATL-EDTKIVKILLFSGLDDSQFDD-KGNTALYYAVD-SGNMQTVKLF 114
Query: 192 VSHTSSLEIPNAQGL-TPFML 211
V L G T F
Sbjct: 115 VKKNWRLMFYGKTGWKTSFYH 135
Score = 91.1 bits (227), Expect = 2e-20
Identities = 12/114 (10%), Positives = 31/114 (27%), Gaps = 10/114 (8%)
Query: 24 VEAGQDVNEPDSETVT-LLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQG 82
++ N +S + A N IE+++ + +
Sbjct: 181 LDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIY--------SANLENVLLD 232
Query: 83 HLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRN 136
+ ++I+ + I + + I + + VN +N
Sbjct: 233 DAEIAKMIIEKHVEYKSDSYTKDLDIVKNNKLDEI-ISKNKELRLMYVNCVKKN 285
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription
regulation, autoantibody; 2.58A {Homo sapiens}
Length = 261
Score = 161 bits (410), Expect = 9e-46
Identities = 52/189 (27%), Positives = 83/189 (43%), Gaps = 7/189 (3%)
Query: 24 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 83
+ G VN ++ V+ LH A + + +K + GA V+ + D TPL A G
Sbjct: 23 ISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWH-TPLFNACVSGS 81
Query: 84 LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMW 143
D V LL+QHGA +S+ ++ IH+AA+ GH V L+A G N++ + + T L
Sbjct: 82 WDCVNLLLQHGASVQP-ESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYL 140
Query: 144 SAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPN 202
+ + L+ GA Q K + LH + L+ + + N
Sbjct: 141 ACEN-QQRACVKKLLESGADVN-QGK-GQDSPLHAVAR-TASEELACLLMDFGADTQAKN 196
Query: 203 AQGLTPFML 211
A+G P L
Sbjct: 197 AEGKRPVEL 205
Score = 161 bits (409), Expect = 1e-45
Identities = 41/192 (21%), Positives = 74/192 (38%), Gaps = 7/192 (3%)
Query: 24 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 83
++ G VN ++ T L A ++ + + + GA V A+P+H A R+GH
Sbjct: 56 LKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQP--ESDLASPIHEAARRGH 113
Query: 84 LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMW 143
++ V LI +G + S T ++ A + V L+ G +VN Q + + L
Sbjct: 114 VECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVN-QGKGQDSPLHA 172
Query: 144 SAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNA 203
A S + LL+ FGA T ++ G + ++ +A + +
Sbjct: 173 VARTA-SEELACLLMDFGADTQAKNA-EGKRPVELVPP-ESPLA-QLFLEREGPPSLMQL 228
Query: 204 QGLTPFMLLEEN 215
L
Sbjct: 229 CRLRIRKCFGIQ 240
Score = 147 bits (375), Expect = 8e-41
Identities = 39/157 (24%), Positives = 68/157 (43%), Gaps = 6/157 (3%)
Query: 39 TLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPT 98
+ +H AAI+ ++ ISQG V+ I D +PLH A GHL V +L++HGA
Sbjct: 5 SPMHEAAIHGHQLSLRNLISQGWAVNIITAD-HVSPLHEACLGGHLSCVKILLKHGAQVN 63
Query: 99 LMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLI 158
+ ++ T + A G V L+ G +V + + + + +A + ++ LI
Sbjct: 64 GVTADWHTPLFNACVSGSWDCVNLLLQHGASVQ-PESDLASPIHEAARRG-HVECVNSLI 121
Query: 159 TFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSH 194
+G + + H L+ A A L+
Sbjct: 122 AYGGNIDHKIS-HLGTPLYLACE-NQQRACVKKLLES 156
Score = 146 bits (370), Expect = 3e-40
Identities = 29/172 (16%), Positives = 59/172 (34%), Gaps = 9/172 (5%)
Query: 24 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 83
++ G V +S+ + +H AA +E + I+ G +D L TPL+ A
Sbjct: 89 LQHGASVQP-ESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLG-TPLYLACENQQ 146
Query: 84 LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMW 143
V L++ GAD + +H A+ + L+ G + ++ G +
Sbjct: 147 RACVKKLLESGADVN-QGKGQDSPLHAVARTASEELACLLMDFGADTQAKNAEGKRPVEL 205
Query: 144 SAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSH 194
+ +L + ++ + H IT ++
Sbjct: 206 VPPES---PLAQLFLEREGPPSLMQL-CRLRIRKCFGI-QQHHKITKLVLPE 252
Score = 125 bits (317), Expect = 9e-33
Identities = 36/140 (25%), Positives = 62/140 (44%), Gaps = 5/140 (3%)
Query: 73 TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 132
+P+H A GH S+ LI G ++ ++ + +H+A GH V L+ G VN
Sbjct: 5 SPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNG 64
Query: 133 QDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TL 191
+ T L + S D LL+ GAS +Q + +H A + HV +L
Sbjct: 65 VTADWHTPLFNACVS-GSWDCVNLLLQHGAS--VQPESDLASPIHEAAR-RGHVECVNSL 120
Query: 192 VSHTSSLEIPNAQGLTPFML 211
+++ +++ + TP L
Sbjct: 121 IAYGGNIDHKISHLGTPLYL 140
Score = 107 bits (270), Expect = 2e-26
Identities = 21/110 (19%), Positives = 40/110 (36%), Gaps = 4/110 (3%)
Query: 24 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 83
+E+G DVN+ + + LH A E+ + GA A + + P+ +
Sbjct: 154 LESGADVNQGKGQ-DSPLHAVARTASEELACLLMDFGADTQAKNAEGK-RPVELVPPESP 211
Query: 84 LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQ 133
L L ++ P+LM H +I ++ + + L
Sbjct: 212 L--AQLFLEREGPPSLMQLCRLRIRKCFGIQQHHKITKLVLPEDLKQFLL 259
Score = 77.5 bits (192), Expect = 4e-16
Identities = 20/106 (18%), Positives = 42/106 (39%), Gaps = 5/106 (4%)
Query: 104 GSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGAS 163
+ +H+AA GH + L+++G VN+ + ++ L + L ++L+ GA
Sbjct: 3 DWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGG-HLSCVKILLKHGAQ 61
Query: 164 TTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTP 208
+ L A L+ H +S++ + +P
Sbjct: 62 VNGVTA-DWHTPLFNACV-SGSWDCVNLLLQHGASVQPES-DLASP 104
Score = 46.7 bits (112), Expect = 7e-06
Identities = 15/74 (20%), Positives = 26/74 (35%), Gaps = 4/74 (5%)
Query: 136 NGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSH 194
+ + + +A R LI+ G + I LH A H++ L+ H
Sbjct: 2 SDWSPMHEAAIHG-HQLSLRNLISQGWAVNIITA-DHVSPLHEACL-GGHLSCVKILLKH 58
Query: 195 TSSLEIPNAQGLTP 208
+ + A TP
Sbjct: 59 GAQVNGVTADWHTP 72
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium,
SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo
sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Length = 167
Score = 157 bits (399), Expect = 2e-45
Identities = 41/157 (26%), Positives = 74/157 (47%), Gaps = 5/157 (3%)
Query: 39 TLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPT 98
+H A + + I Q +++ + TPL WA G + V L+Q+GADP
Sbjct: 5 LSVHQLAAQGEMLYLATRIEQENVINHTDEEGF-TPLMWAAAHGQIAVVEFLLQNGADPQ 63
Query: 99 LMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLI 158
L+ + + A G+T IV L+ G++VN D NG T L+++ + + ++L+
Sbjct: 64 LLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGN-HVKCVKMLL 122
Query: 159 TFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSH 194
GA TI+ G ++ A+ + ++ + SH
Sbjct: 123 ESGADPTIETD-SGYNSMDLAVA-LGYRSVQQVIESH 157
Score = 146 bits (372), Expect = 1e-41
Identities = 31/146 (21%), Positives = 61/146 (41%), Gaps = 2/146 (1%)
Query: 24 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 83
+E +N D E T L WAA + +I ++++ + GA +G + + L A +G+
Sbjct: 23 IEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKG-RESALSLACSKGY 81
Query: 84 LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMW 143
D V +L+ G D D G T + A H + V L+ G + ++ +G ++
Sbjct: 82 TDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDL 141
Query: 144 SAYKVFSLDPTRLLITFGASTTIQDK 169
+ +++ + K
Sbjct: 142 AVALG-YRSVQQVIESHLLKLLQNIK 166
Score = 87.4 bits (218), Expect = 2e-20
Identities = 27/109 (24%), Positives = 41/109 (37%), Gaps = 4/109 (3%)
Query: 104 GSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGAS 163
S +HQ A G +A + + +N D G T LMW+A + L+ GA
Sbjct: 3 NSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHG-QIAVVEFLLQNGAD 61
Query: 164 TTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTPFML 211
+ K AL A K + I L+ + + G TP +
Sbjct: 62 PQLLGK-GRESALSLACS-KGYTDIVKMLLDCGVDVNEYDWNGGTPLLY 108
Score = 47.8 bits (115), Expect = 1e-06
Identities = 10/77 (12%), Positives = 23/77 (29%), Gaps = 4/77 (5%)
Query: 136 NGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSH 194
++ A + + I D+ G L WA +A+ L+ +
Sbjct: 2 ANSLSVHQLAAQ-GEMLYLATRIEQENVINHTDE-EGFTPLMWAAA-HGQIAVVEFLLQN 58
Query: 195 TSSLEIPNAQGLTPFML 211
+ ++ + L
Sbjct: 59 GADPQLLGKGRESALSL 75
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and
SOCS box-containing...; ASB9, ANK repeat, L-shaped,
structural protein; 2.20A {Homo sapiens}
Length = 285
Score = 159 bits (404), Expect = 1e-44
Identities = 50/189 (26%), Positives = 83/189 (43%), Gaps = 7/189 (3%)
Query: 24 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 83
+ G VN ++ V+ LH A + + +K + GA V+ + D TPL A G
Sbjct: 79 ISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWH-TPLFNACVSGS 137
Query: 84 LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMW 143
D V LL+QHGA +S+ ++ IH+AA+ GH V L+A G N++ + + T L
Sbjct: 138 WDCVNLLLQHGASVQP-ESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYL 196
Query: 144 SAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPN 202
+ + L+ GA + + LH + + L+ + + N
Sbjct: 197 ACENQ-QRACVKKLLESGAD--VNQGKGQDSPLHAVVR-TASEELACLLMDFGADTQAKN 252
Query: 203 AQGLTPFML 211
A+G P L
Sbjct: 253 AEGKRPVEL 261
Score = 157 bits (400), Expect = 4e-44
Identities = 40/171 (23%), Positives = 71/171 (41%), Gaps = 6/171 (3%)
Query: 24 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 83
++ G VN ++ T L A ++ + + + GA V A+P+H A R+GH
Sbjct: 112 LKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQP--ESDLASPIHEAARRGH 169
Query: 84 LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMW 143
++ V LI +G + S T ++ A + V L+ G +VN Q + + L
Sbjct: 170 VECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVN-QGKGQDSPLHA 228
Query: 144 SAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSH 194
S + LL+ FGA T ++ G + ++ +A L
Sbjct: 229 VVRTA-SEELACLLMDFGADTQAKNA-EGKRPVELVPP-ESPLAQLFLERE 276
Score = 147 bits (374), Expect = 2e-40
Identities = 43/189 (22%), Positives = 75/189 (39%), Gaps = 8/189 (4%)
Query: 24 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 83
V G + D + + R +S + DA+ +P+H A GH
Sbjct: 15 VPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSD---WSPMHEAAIHGH 71
Query: 84 LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMW 143
S+ LI G ++ ++ + +H+A GH V L+ G VN + T L
Sbjct: 72 QLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFN 131
Query: 144 SAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPN 202
+ S D LL+ GAS +Q + +H A + HV +L+++ +++
Sbjct: 132 ACVSG-SWDCVNLLLQHGAS--VQPESDLASPIHEAAR-RGHVECVNSLIAYGGNIDHKI 187
Query: 203 AQGLTPFML 211
+ TP L
Sbjct: 188 SHLGTPLYL 196
Score = 121 bits (305), Expect = 6e-31
Identities = 25/173 (14%), Positives = 60/173 (34%), Gaps = 16/173 (9%)
Query: 44 AAINNRIEIMKYFISQGAIVDAIGGDLQ----ATPLHWATRQGHLDSVVLLIQHGADPTL 99
+ ++ + +G+ + ++ G + P G L+ +
Sbjct: 2 GSSHHHHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGI-----RLLSNPLMGDA 56
Query: 100 MDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLIT 159
+ + +H+AA GH + L+++G VN+ + ++ L + L ++L+
Sbjct: 57 VS--DWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLG-GHLSCVKILLK 113
Query: 160 FGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTPFML 211
GA + L A L+ H +S++ + +P
Sbjct: 114 HGAQVNGVTA-DWHTPLFNACV-SGSWDCVNLLLQHGASVQPES-DLASPIHE 163
Score = 115 bits (290), Expect = 7e-29
Identities = 25/108 (23%), Positives = 44/108 (40%), Gaps = 3/108 (2%)
Query: 24 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 83
+ G +++ S T L+ A N + +K + GA V+ G Q +PLH R
Sbjct: 177 IAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQ--GKGQDSPLHAVVRTAS 234
Query: 84 LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVN 131
+ LL+ GAD ++EG + +L +G ++
Sbjct: 235 EELACLLMDFGADTQAKNAEGKRPVELVPPESPL-AQLFLEREGASLP 281
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription
factors, ikappab proteins; 1.86A {Homo sapiens} SCOP:
d.211.1.1 PDB: 1k1b_A
Length = 241
Score = 157 bits (400), Expect = 1e-44
Identities = 47/204 (23%), Positives = 83/204 (40%), Gaps = 10/204 (4%)
Query: 14 ELTKVFVGKCVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQAT 73
V + G++++ ++ T LH A I +++ ++ GA A+ Q T
Sbjct: 23 PAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQ-T 81
Query: 74 PLHWATRQGHLDSVVLLIQHGADPTL----MDSEGSTCIHQAAQFGHTRIVAYLVAKGIN 129
H A + L+ A TL + +G T +H A V L+ +G +
Sbjct: 82 AAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGAD 141
Query: 130 VNLQDRN-GMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAI 188
++ D G + L+ + SL +LL+ GA+ Q G+ ALH A + + +
Sbjct: 142 IDAVDIKSGRSPLIHAVENN-SLSMVQLLLQHGANVNAQMY-SGSSALHSASG-RGLLPL 198
Query: 189 T-TLVSHTSSLEIPNAQGLTPFML 211
TLV + + N TP M+
Sbjct: 199 VRTLVRSGADSSLKNCHNDTPLMV 222
Score = 151 bits (383), Expect = 3e-42
Identities = 42/177 (23%), Positives = 74/177 (41%), Gaps = 10/177 (5%)
Query: 24 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAI----VDAIGGDLQATPLHWAT 79
V AG D T H A + ++ + A ++A D T LH A
Sbjct: 66 VTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGL-TALHVAV 124
Query: 80 RQGHLDSVVLLIQHGADPTLMDSE-GSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGM 138
++V LL++ GAD +D + G + + A + +V L+ G NVN Q +G
Sbjct: 125 NTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGS 184
Query: 139 TALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSH 194
+AL ++ + L R L+ GA +++++ H + L A + + I +
Sbjct: 185 SALHSASGR-GLLPLVRTLVRSGADSSLKNC-HNDTPLMVARS-RRVIDILRGKATR 238
Score = 149 bits (379), Expect = 1e-41
Identities = 41/188 (21%), Positives = 73/188 (38%), Gaps = 12/188 (6%)
Query: 30 VNEPDSETVTLLHWAAINNRIEIMKYFIS----QGAIVDAIGGDLQATPLHWATRQGHLD 85
D + T LH A + + + ++ G +D Q TPLH A
Sbjct: 2 ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQ-TPLHLAVITTLPS 60
Query: 86 SVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKG----INVNLQDRNGMTAL 141
V LL+ GA P +D G T H A + + L+ +++ ++ +G+TAL
Sbjct: 61 VVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTAL 120
Query: 142 MWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEI 200
+ + +LL+ GA D G L A+ N +++ L+ H +++
Sbjct: 121 HVAVNT-ECQETVQLLLERGADIDAVDIKSGRSPLIHAVE-NNSLSMVQLLLQHGANVNA 178
Query: 201 PNAQGLTP 208
G +
Sbjct: 179 QMYSGSSA 186
Score = 144 bits (366), Expect = 8e-40
Identities = 39/150 (26%), Positives = 66/150 (44%), Gaps = 1/150 (0%)
Query: 14 ELTKVFVGKCVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQAT 73
+ + D+ + + +T LH A E ++ + +GA +DA+ +
Sbjct: 93 TCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRS 152
Query: 74 PLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQ 133
PL A L V LL+QHGA+ GS+ +H A+ G +V LV G + +L+
Sbjct: 153 PLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLK 212
Query: 134 DRNGMTALMWSAYKVFSLDPTRLLITFGAS 163
+ + T LM + + +D R T AS
Sbjct: 213 NCHNDTPLMVARSR-RVIDILRGKATRPAS 241
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin
repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A
1ymp_A
Length = 223
Score = 156 bits (396), Expect = 3e-44
Identities = 44/173 (25%), Positives = 69/173 (39%), Gaps = 6/173 (3%)
Query: 24 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAI-VDAIGGDLQATPLHWATRQG 82
+EA D N D+ T LH A + + + I A +DA D TPL A R
Sbjct: 45 LEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGT-TPLILAARLA 103
Query: 83 HLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALM 142
+ LI AD +D G + +H AA + L+ G N ++Q+ T L
Sbjct: 104 VEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLF 163
Query: 143 WSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITT-LVSH 194
+A + S + ++L+ A+ I D + A + H I L +
Sbjct: 164 LAARE-GSYETAKVLLDHFANRDITDH-MDRLPRDIAQE-RMHHDIVRLLDEY 213
Score = 145 bits (369), Expect = 2e-40
Identities = 45/201 (22%), Positives = 81/201 (40%), Gaps = 11/201 (5%)
Query: 14 ELTKVFVGKCVEAGQDV-NEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQA 72
+ F+ G + N+ D T LH AA +R + K + A + +
Sbjct: 5 AVISDFI----YQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGR- 59
Query: 73 TPLHWATRQGHLDSVVLLIQHGA-DPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVN 131
TPLH A +LI++ A D +G+T + AA+ ++ L+ +VN
Sbjct: 60 TPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVN 119
Query: 132 LQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-T 190
D G +AL W+A ++D +L+ GA+ +Q+ L A +
Sbjct: 120 AVDDLGKSALHWAAAV-NNVDAAVVLLKNGANKDMQNN-REETPLFLAAR-EGSYETAKV 176
Query: 191 LVSHTSSLEIPNAQGLTPFML 211
L+ H ++ +I + P +
Sbjct: 177 LLDHFANRDITDHMDRLPRDI 197
Score = 132 bits (336), Expect = 8e-36
Identities = 41/166 (24%), Positives = 68/166 (40%), Gaps = 5/166 (3%)
Query: 48 NRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTC 107
+ ++ FI QGA + T LH A R D+ L++ AD + D+ G T
Sbjct: 2 DAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTP 61
Query: 108 IHQAAQFGHTRIVAYLVAKG-INVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTI 166
+H A + L+ +++ + +G T L+ +A LI A
Sbjct: 62 LHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARL-AVEGMLEDLINSHADVNA 120
Query: 167 QDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTPFML 211
D G ALHWA N+V L+ + ++ ++ N + TP L
Sbjct: 121 VDD-LGKSALHWAAA-VNNVDAAVVLLKNGANKDMQNNREETPLFL 164
Score = 112 bits (283), Expect = 1e-28
Identities = 28/108 (25%), Positives = 45/108 (41%), Gaps = 1/108 (0%)
Query: 24 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 83
+ + DVN D + LHWAA N ++ + GA D + TPL A R+G
Sbjct: 112 INSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREE-TPLFLAAREGS 170
Query: 84 LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVN 131
++ +L+ H A+ + D A + H IV L + +
Sbjct: 171 YETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVRS 218
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A
{Enterococcus faecalis}
Length = 201
Score = 154 bits (392), Expect = 5e-44
Identities = 48/178 (26%), Positives = 81/178 (45%), Gaps = 10/178 (5%)
Query: 24 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 83
+ V+E D+E T L+ A NN IEI K I +GA ++ +P +A QG
Sbjct: 26 QDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSI-SDSPYLYAGAQGR 84
Query: 84 LDSVVLLIQHGA-DPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGI-NVNLQDRNGMTAL 141
+ + +++H D + G + AA+ GH V L+ G +++ Q+ G TAL
Sbjct: 85 TEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTAL 144
Query: 142 MWSAYKVFS----LDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITT-LVSH 194
+ + D +LL+ GA +I+D G A+ +A K + I+ L +
Sbjct: 145 IEAVGLREGNQLYQDIVKLLMENGADQSIKDN-SGRTAMDYANQ-KGYTEISKILAQY 200
Score = 147 bits (375), Expect = 1e-41
Identities = 43/180 (23%), Positives = 73/180 (40%), Gaps = 10/180 (5%)
Query: 39 TLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPT 98
LL A + ++ + VD + + TPL+ A ++ LI GAD
Sbjct: 8 ALLEAANQRDTKKVKEILQDTTYQVDEVDTEGN-TPLNIAVHNNDIEIAKALIDRGADIN 66
Query: 99 LMDSEGSTCIHQAAQFGHTRIVAYLVAKG-INVNLQDRNGMTALMWSAYKVFSLDPTRLL 157
L +S + A G T I+AY++ ++N +R G AL+ +A K +D +LL
Sbjct: 67 LQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKG-HIDNVKLL 125
Query: 158 ITFG-ASTTIQDKIHGNVALHWAIYA----KNHVAIT-TLVSHTSSLEIPNAQGLTPFML 211
+ G Q+ G AL A+ + + I L+ + + I + G T
Sbjct: 126 LEDGREDIDFQND-FGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDY 184
Score = 83.3 bits (207), Expect = 1e-18
Identities = 21/113 (18%), Positives = 38/113 (33%), Gaps = 5/113 (4%)
Query: 101 DSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITF 160
E + A Q ++ L V+ D G T L + + ++ + LI
Sbjct: 3 TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHN-NDIEIAKALIDR 61
Query: 161 GASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSH-TSSLEIPNAQGLTPFML 211
GA +Q+ + +A + I ++ H T L N G +
Sbjct: 62 GADINLQNS-ISDSPYLYAGA-QGRTEILAYMLKHATPDLNKHNRYGGNALIP 112
Score = 49.4 bits (119), Expect = 6e-07
Identities = 12/81 (14%), Positives = 30/81 (37%), Gaps = 4/81 (4%)
Query: 132 LQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-T 190
++ L + + + +L D GN L+ A++ N + I
Sbjct: 1 MKTYEVGALLEAANQRD-TKKVKEILQDTTYQVDEVDT-EGNTPLNIAVH-NNDIEIAKA 57
Query: 191 LVSHTSSLEIPNAQGLTPFML 211
L+ + + + N+ +P++
Sbjct: 58 LIDRGADINLQNSISDSPYLY 78
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene
family, nuclear protein, phosphorylation, disease
mutation, polymorphism; 2.20A {Homo sapiens} SCOP:
b.34.2.1 d.211.1.1 PDB: 4a63_B
Length = 239
Score = 155 bits (393), Expect = 9e-44
Identities = 49/216 (22%), Positives = 75/216 (34%), Gaps = 19/216 (8%)
Query: 33 PDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQ 92
P+ L N + I+ G V L L ++ +G D V +I
Sbjct: 1 PEITGQVSLPPGKRTNLRKTGSERIAHGMRVKF--NPLPLALLLDSSLEGEFDLVQRIIY 58
Query: 93 HGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLD 152
DP+L + EG T +H A GHT IV +LV G+NVN D +G T L +A ++
Sbjct: 59 EVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASC-NNVQ 117
Query: 153 PTRLLITFGASTTIQDK--IHGNVALHWAIYAKNHVAITT-LVSHTSSLEIPNAQGLTPF 209
+ L+ GA+ + + + + + L + I N +
Sbjct: 118 VCKFLVESGAAVFAMTYSDMQTAADKCEEME-EGYTQCSQFLYGVQEKMGIMNKGVIYA- 175
Query: 210 MLLEENIGAPWLGKATVDKITELKDHYNTQQNIIHR 245
L EL IIHR
Sbjct: 176 -----------LWDYEPQNDDELPMKEGDCMTIIHR 200
Score = 142 bits (361), Expect = 4e-39
Identities = 35/160 (21%), Positives = 65/160 (40%), Gaps = 9/160 (5%)
Query: 24 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 83
+ D + P+ E +T LH A EI+K+ + G V+A D TPLH A +
Sbjct: 57 IYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGW-TPLHCAASCNN 115
Query: 84 LDSVVLLIQHGADP---TLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTA 140
+ L++ GA T D + + + + G+T+ +L + + ++ + A
Sbjct: 116 VQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYA 175
Query: 141 LMWSAYKVFSLDPTRLLITFGASTTIQDKIHGN-VALHWA 179
L + + L + G TI + + + WA
Sbjct: 176 LWDYEPQ----NDDELPMKEGDCMTIIHREDEDEIEWWWA 211
Score = 106 bits (266), Expect = 4e-26
Identities = 22/124 (17%), Positives = 42/124 (33%), Gaps = 3/124 (2%)
Query: 24 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIG--GDLQATPLHWATRQ 81
V+ G +VN DS+ T LH AA N +++ K+ + GA V A+ A +
Sbjct: 90 VQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEE 149
Query: 82 GHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTAL 141
G+ L +M+ + + + + ++
Sbjct: 150 GYTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQNDDEL-PMKEGDCMTIIHREDEDEIEW 208
Query: 142 MWSA 145
W+
Sbjct: 209 WWAR 212
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell
cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A
2f8x_K 3nbn_B 3v79_K* 1ot8_A
Length = 253
Score = 155 bits (395), Expect = 9e-44
Identities = 44/173 (25%), Positives = 68/173 (39%), Gaps = 6/173 (3%)
Query: 24 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAI-VDAIGGDLQATPLHWATRQG 82
+EA D N D+ T LH A + + + I A +DA D TPL A R
Sbjct: 77 LEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGT-TPLILAARLA 135
Query: 83 HLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALM 142
+ LI AD +D G + +H AA + L+ G N ++Q+ T L
Sbjct: 136 VEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLF 195
Query: 143 WSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITT-LVSH 194
+A + S + ++L+ A+ I D + A + H I L
Sbjct: 196 LAARE-GSYETAKVLLDHFANRDITDH-MDRLPRDIAQE-RMHHDIVRLLDLE 245
Score = 152 bits (387), Expect = 1e-42
Identities = 47/198 (23%), Positives = 77/198 (38%), Gaps = 18/198 (9%)
Query: 29 DVNEPDSETVTLLHWAAIN-------------NRIEIMKYFISQGAIVDAIGGDLQATPL 75
DVN + T L A+ + + ++ FI QGA + T L
Sbjct: 2 DVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETAL 61
Query: 76 HWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKG-INVNLQD 134
H A R D+ L++ AD + D+ G T +H A + L+ +++ +
Sbjct: 62 HLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARM 121
Query: 135 RNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVS 193
+G T L+ +A LI A D G ALHWA N+V L+
Sbjct: 122 HDGTTPLILAARL-AVEGMLEDLINSHADVNAVDD-LGKSALHWAAA-VNNVDAAVVLLK 178
Query: 194 HTSSLEIPNAQGLTPFML 211
+ ++ ++ N + TP L
Sbjct: 179 NGANKDMQNNREETPLFL 196
Score = 136 bits (345), Expect = 9e-37
Identities = 29/136 (21%), Positives = 58/136 (42%), Gaps = 2/136 (1%)
Query: 27 GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDS 86
D++ + T L AA +++ I+ A V+A+ + + LHWA ++D+
Sbjct: 114 ATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGK-SALHWAAAVNNVDA 172
Query: 87 VVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAY 146
V+L+++GA+ + ++ T + AA+ G L+ N ++ D +
Sbjct: 173 AVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQE 232
Query: 147 KVFSLDPTRLLITFGA 162
+ D RLL
Sbjct: 233 R-MHHDIVRLLDLEHH 247
Score = 113 bits (285), Expect = 2e-28
Identities = 28/108 (25%), Positives = 46/108 (42%), Gaps = 1/108 (0%)
Query: 24 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 83
+ + DVN D + LHWAA N ++ + GA D + TPL A R+G
Sbjct: 144 INSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREE-TPLFLAAREGS 202
Query: 84 LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVN 131
++ +L+ H A+ + D A + H IV L + + +
Sbjct: 203 YETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDLEHHHHH 250
Score = 53.6 bits (130), Expect = 4e-08
Identities = 21/97 (21%), Positives = 34/97 (35%), Gaps = 14/97 (14%)
Query: 128 INVNLQDRNGMTALMWSAYKVF------------SLDPTRLLITFGASTTIQDKIHGNVA 175
++VN++ +G T LM ++ + I GAS Q G A
Sbjct: 1 MDVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETA 60
Query: 176 LHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTPFML 211
LH A + L+ ++ I + G TP
Sbjct: 61 LHLAAR-YSRSDAAKRLLEASADANIQDNMGRTPLHA 96
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit);
transcription factor, IKB/NFKB complex; 2.30A {Homo
sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Length = 236
Score = 155 bits (393), Expect = 1e-43
Identities = 53/197 (26%), Positives = 74/197 (37%), Gaps = 12/197 (6%)
Query: 27 GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDS 86
+N ++ T LH A I N+ EI + + G + TPLH A QG L S
Sbjct: 35 LAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGN-TPLHLACEQGCLAS 93
Query: 87 VVLLIQHGADPTLM------DSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQD-RNGMT 139
V +L Q P L + G TC+H A+ G+ IV LV+ G +VN Q+ NG T
Sbjct: 94 VGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRT 153
Query: 140 ALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSL 198
AL + + D LL+ GA G + I L T
Sbjct: 154 ALHLAVDLQ-NPDLVSLLLKCGADVNRVTY-QGYSPYQLTWG-RPSTRIQQQLGQLTLEN 210
Query: 199 EIPNAQGLTPFMLLEEN 215
+ E+
Sbjct: 211 LQMLPESEDEESYDTES 227
Score = 154 bits (392), Expect = 2e-43
Identities = 45/184 (24%), Positives = 74/184 (40%), Gaps = 14/184 (7%)
Query: 39 TLLHWAAINNR----IEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHG 94
+ LH A I+ +E+++ A ++ Q TPLH A + L+ G
Sbjct: 10 SFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQ-TPLHLAVITNQPEIAEALLGAG 68
Query: 95 ADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGIN------VNLQDRNGMTALMWSAYKV 148
DP L D G+T +H A + G V L + + NG T L ++
Sbjct: 69 CDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHG 128
Query: 149 FSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLT 207
L LL++ GA Q+ +G ALH A+ + + L+ + + QG +
Sbjct: 129 -YLGIVELLVSLGADVNAQEPCNGRTALHLAVD-LQNPDLVSLLLKCGADVNRVTYQGYS 186
Query: 208 PFML 211
P+ L
Sbjct: 187 PYQL 190
Score = 135 bits (342), Expect = 1e-36
Identities = 34/163 (20%), Positives = 54/163 (33%), Gaps = 10/163 (6%)
Query: 24 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQA------TPLHW 77
+ AG D D T LH A + + + L+A T LH
Sbjct: 65 LGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPH-LHSILKATNYNGHTCLHL 123
Query: 78 ATRQGHLDSVVLLIQHGADPTLMD-SEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRN 136
A+ G+L V LL+ GAD + G T +H A + +V+ L+ G +VN
Sbjct: 124 ASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQ 183
Query: 137 GMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWA 179
G + + + S + L +
Sbjct: 184 GYSPYQLTWGR-PSTRIQQQLGQLTLENLQMLP-ESEDEESYD 224
Score = 126 bits (319), Expect = 2e-33
Identities = 27/125 (21%), Positives = 44/125 (35%)
Query: 21 GKCVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATR 80
+ + T LH A+I+ + I++ +S GA V+A T LH A
Sbjct: 101 CTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVD 160
Query: 81 QGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTA 140
+ D V LL++ GAD + +G + TRI L +
Sbjct: 161 LQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDE 220
Query: 141 LMWSA 145
+
Sbjct: 221 ESYDT 225
Score = 92.2 bits (230), Expect = 2e-21
Identities = 18/98 (18%), Positives = 29/98 (29%), Gaps = 2/98 (2%)
Query: 24 VEAGQDVNEPDSET-VTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQG 82
V G DVN + T LH A +++ + GA V+ + +P +
Sbjct: 137 VSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGY-SPYQLTWGRP 195
Query: 83 HLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIV 120
L Q + M E + T
Sbjct: 196 STRIQQQLGQLTLENLQMLPESEDEESYDTESEFTEFT 233
Score = 83.0 bits (206), Expect = 4e-18
Identities = 22/119 (18%), Positives = 38/119 (31%), Gaps = 14/119 (11%)
Query: 101 DSEGSTCIHQAAQFGHTR----IVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRL 156
+G + +H A ++ + +N Q+ T L + +
Sbjct: 5 TEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITN-QPEIAEA 63
Query: 157 LITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSH------TSSLEIPNAQGLTP 208
L+ G ++D GN LH A + +A L S L+ N G T
Sbjct: 64 LLGAGCDPELRDF-RGNTPLHLACE-QGCLASVGVLTQSCTTPHLHSILKATNYNGHTC 120
Score = 49.5 bits (119), Expect = 9e-07
Identities = 17/83 (20%), Positives = 30/83 (36%), Gaps = 6/83 (7%)
Query: 133 QDRNGMTALMWSAY---KVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT 189
+G + L + K +++ R + A Q+ LH A+ N I
Sbjct: 4 LTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNN-LQQTPLHLAVI-TNQPEIA 61
Query: 190 -TLVSHTSSLEIPNAQGLTPFML 211
L+ E+ + +G TP L
Sbjct: 62 EALLGAGCDPELRDFRGNTPLHL 84
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT
signaling, POL ribosylation, transferase-signaling
protein complex; 2.00A {Mus musculus}
Length = 351
Score = 158 bits (402), Expect = 1e-43
Identities = 47/179 (26%), Positives = 65/179 (36%), Gaps = 6/179 (3%)
Query: 24 VEAGQDVNEPDSETVTLLHWAAI-NNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQG 82
+ L AA N ++M A G TPLH A
Sbjct: 11 ADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKS-TPLHLAAGYN 69
Query: 83 HLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALM 142
+ V LL+QHGAD D G +H A +GH + L+ G VN D T L
Sbjct: 70 RVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLH 129
Query: 143 WSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITT-LVSHTSSLEI 200
+A K ++ LL++ GA T+ + HG A+ A T S L+
Sbjct: 130 EAASK-NRVEVCSLLLSHGADPTLVNC-HGKSAVDMAPT-PELRERLTYEFKGHSLLQA 185
Score = 136 bits (346), Expect = 6e-36
Identities = 39/159 (24%), Positives = 66/159 (41%), Gaps = 15/159 (9%)
Query: 29 DVNEPDSETVTLLHWAAIN---NRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLD 85
+ T LH A + R ++ + + +GA V+ D TPLH A + H D
Sbjct: 203 INFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFM-TPLHVAAERAHND 261
Query: 86 SVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSA 145
+ +L +HGA +DS G T +H+AA GH + L++ G + ++ G TA
Sbjct: 262 VMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMGN 321
Query: 146 YKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKN 184
V + +++ D + L A +K
Sbjct: 322 EAV------QQILSESTPMRTSDV---DYRLLEA--SKA 349
Score = 132 bits (335), Expect = 2e-34
Identities = 43/197 (21%), Positives = 68/197 (34%), Gaps = 20/197 (10%)
Query: 24 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 83
+ G D + + + A E + Y + L A R+
Sbjct: 144 LSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHS-------------LLQAAREAD 190
Query: 84 LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTR---IVAYLVAKGINVNLQDRNGMTA 140
L V + T +H A H + + L+ KG NVN ++++ MT
Sbjct: 191 LAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTP 250
Query: 141 LMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLE 199
L +A + D +L GA D G ALH A H+ L+S+ S
Sbjct: 251 LHVAAER-AHNDVMEVLHKHGAKMNALDS-LGQTALHRAAL-AGHLQTCRLLLSYGSDPS 307
Query: 200 IPNAQGLTPFMLLEENI 216
I + QG T + E +
Sbjct: 308 IISLQGFTAAQMGNEAV 324
Score = 131 bits (332), Expect = 5e-34
Identities = 40/163 (24%), Positives = 65/163 (39%), Gaps = 6/163 (3%)
Query: 51 EIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVV-LLIQHGADPTLMDSEGSTCIH 109
+ A G + + L A R G+ + ++ LL + D ST +H
Sbjct: 5 KSALDLADPSAKAVLTG-EYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLH 63
Query: 110 QAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDK 169
AA + RIV L+ G +V+ +D+ G+ L + + T LL+ GA D
Sbjct: 64 LAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYG-HYEVTELLLKHGACVNAMDL 122
Query: 170 IHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTPFML 211
LH A KN V + L+SH + + N G + +
Sbjct: 123 -WQFTPLHEAAS-KNRVEVCSLLLSHGADPTLVNCHGKSAVDM 163
Score = 117 bits (297), Expect = 2e-29
Identities = 31/124 (25%), Positives = 60/124 (48%), Gaps = 8/124 (6%)
Query: 24 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 83
+ G +VNE + + +T LH AA ++M+ GA ++A+ Q T LH A GH
Sbjct: 234 LRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQ-TALHRAALAGH 292
Query: 84 LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMW 143
L + LL+ +G+DP+++ +G T + V ++++ + D + L+
Sbjct: 293 LQTCRLLLSYGSDPSIISLQGFTAAQMGNE-----AVQQILSESTPMRTSDVDY--RLLE 345
Query: 144 SAYK 147
++
Sbjct: 346 ASKA 349
Score = 46.3 bits (111), Expect = 2e-05
Identities = 9/59 (15%), Positives = 19/59 (32%), Gaps = 8/59 (13%)
Query: 24 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQG 82
+ G D + + T E ++ +S+ + D L A++ G
Sbjct: 300 LSYGSDPSIISLQGFTAAQMGN-----EAVQQILSESTPMRTSDVD---YRLLEASKAG 350
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein
binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Length = 192
Score = 152 bits (387), Expect = 2e-43
Identities = 33/166 (19%), Positives = 61/166 (36%), Gaps = 5/166 (3%)
Query: 30 VNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVL 89
N DS T L A + + + ++ + T L WA + L
Sbjct: 28 RNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGS-TALIWAVKNNRLGIAEK 86
Query: 90 LIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVF 149
L+ G++ D G T + + FG++ + +L+ G NVN ++ G T L+ ++
Sbjct: 87 LLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYG- 145
Query: 150 SLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITT-LVSH 194
+ + L+ GA + +D G A A +
Sbjct: 146 RSEIVKKLLELGADISARDL-TGLTAEASARI-FGRQEVIKIFTEV 189
Score = 136 bits (345), Expect = 2e-37
Identities = 37/135 (27%), Positives = 68/135 (50%), Gaps = 2/135 (1%)
Query: 24 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 83
VE + + D E T L WA NNR+ I + +S+G+ V+ + TPL W+ G+
Sbjct: 55 VENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGK-TPLMWSIIFGY 113
Query: 84 LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMW 143
+ L++HGA+ + EG T + A+++G + IV L+ G +++ +D G+TA
Sbjct: 114 SEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEAS 173
Query: 144 SAYKVFSLDPTRLLI 158
+ + ++
Sbjct: 174 ARIF-GRQEVIKIFT 187
Score = 124 bits (313), Expect = 5e-33
Identities = 39/182 (21%), Positives = 69/182 (37%), Gaps = 11/182 (6%)
Query: 31 NEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLL 90
+ D + + + + + + D+ TPL A G +++ L
Sbjct: 2 SHMDKNGEIVEKIKDEKSINQNLDFLRNYR---DSYN----RTPLMVACMLGMENAIDKL 54
Query: 91 IQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFS 150
+++ D EGST + A + I L++KG NVN +D +G T LMWS
Sbjct: 55 VENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFG-Y 113
Query: 151 LDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTPF 209
+ + L+ GA+ ++ G L A I L+ + + + GLT
Sbjct: 114 SEMSYFLLEHGANVNDRNL-EGETPLIVASK-YGRSEIVKKLLELGADISARDLTGLTAE 171
Query: 210 ML 211
Sbjct: 172 AS 173
Score = 75.5 bits (187), Expect = 6e-16
Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 1/72 (1%)
Query: 24 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 83
+E G +VN+ + E T L A+ R EI+K + GA + A T A G
Sbjct: 121 LEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGL-TAEASARIFGR 179
Query: 84 LDSVVLLIQHGA 95
+ + + +
Sbjct: 180 QEVIKIFTEVRR 191
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin
repeat Pro ribosome display, apoptosis; 1.80A {Synthetic
source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D*
3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B*
2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Length = 169
Score = 151 bits (384), Expect = 3e-43
Identities = 53/171 (30%), Positives = 77/171 (45%), Gaps = 12/171 (7%)
Query: 25 EAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHL 84
G D+ + L AA R + ++ ++ GA V+A TPLH A GHL
Sbjct: 9 HHGSDLGKK-------LLEAARAGRDDEVRILMANGADVNAEDAS-GWTPLHLAAFNGHL 60
Query: 85 DSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWS 144
+ V +L+++GAD +D G T + AA FGH IV L+ G +VN D G T L +
Sbjct: 61 EIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLA 120
Query: 145 AYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSH 194
A L+ +L+ GA QDK G A +I + + L
Sbjct: 121 AMFG-HLEIVEVLLKNGADVNAQDK-FGKTAFDISID-NGNEDLAEILQKL 168
Score = 137 bits (348), Expect = 4e-38
Identities = 53/135 (39%), Positives = 72/135 (53%), Gaps = 2/135 (1%)
Query: 24 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 83
+ G DVN D+ T LH AA N +EI++ + GA V+A+ TPL A GH
Sbjct: 34 MANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGM-TPLRLAALFGH 92
Query: 84 LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMW 143
L+ V +L+++GAD D EG T +H AA FGH IV L+ G +VN QD+ G TA
Sbjct: 93 LEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDI 152
Query: 144 SAYKVFSLDPTRLLI 158
S + D +L
Sbjct: 153 SIDN-GNEDLAEILQ 166
Score = 119 bits (302), Expect = 8e-32
Identities = 47/154 (30%), Positives = 68/154 (44%), Gaps = 4/154 (2%)
Query: 59 QGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTR 118
+G+ G L A R G D V +L+ +GAD D+ G T +H AA GH
Sbjct: 2 RGSHHHHHHGSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLE 61
Query: 119 IVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHW 178
IV L+ G +VN D GMT L +A L+ +L+ GA D G+ LH
Sbjct: 62 IVEVLLKNGADVNAVDHAGMTPLRLAALFG-HLEIVEVLLKNGADVNANDM-EGHTPLHL 119
Query: 179 AIYAKNHVAIT-TLVSHTSSLEIPNAQGLTPFML 211
A H+ I L+ + + + + G T F +
Sbjct: 120 AAM-FGHLEIVEVLLKNGADVNAQDKFGKTAFDI 152
Score = 41.2 bits (98), Expect = 2e-04
Identities = 7/35 (20%), Positives = 13/35 (37%)
Query: 24 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFIS 58
++ G DVN D T + N ++ +
Sbjct: 133 LKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase
(M130), serine/threonine protein phosphatase PP1-beta
(OR delta) catalytic subunit; myosin phosphatase; HET:
PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Length = 299
Score = 154 bits (391), Expect = 1e-42
Identities = 55/221 (24%), Positives = 91/221 (41%), Gaps = 32/221 (14%)
Query: 24 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 83
+E G D+N + + +T LH A I++ ++++K+ + GA ++ + PLH A G+
Sbjct: 60 LERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGW-IPLHAAASCGY 118
Query: 84 LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAK----------------- 126
LD LI GA ++SEG T + A + ++ V +
Sbjct: 119 LDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIML 178
Query: 127 ----------GINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVAL 176
IN ++G TAL +A K + +LLI I+D G L
Sbjct: 179 RDARQWLNSGHINDVRHAKSGGTALHVAAAKG-YTEVLKLLIQARYDVNIKDY-DGWTPL 236
Query: 177 HWAIYAKNHVAITT-LVSHTSSLEIPNAQGLTPFMLLEENI 216
H A + LV + +E N G T F + +E+I
Sbjct: 237 HAAAH-WGKEEACRILVENLCDMEAVNKVGQTAFDVADEDI 276
Score = 143 bits (364), Expect = 7e-39
Identities = 36/182 (19%), Positives = 63/182 (34%), Gaps = 8/182 (4%)
Query: 34 DSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQH 93
D++ ++ + + A G + V+ L++
Sbjct: 5 DAKQKRNEQLKRWIGSETDLEPPVVKRKKTKV--KFDDGAVFLAACSSGDTEEVLRLLER 62
Query: 94 GADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDP 153
GAD + +G T +HQA + +V +LV G N+N D G L +A LD
Sbjct: 63 GADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASC-GYLDI 121
Query: 154 TRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVS-HTSSLEIPNAQGLTPFML 211
LI+ GA + G+ L A + + V+ +E + ML
Sbjct: 122 AEYLISQGAHVGAVNS-EGDTPLDIAEE-EAMEELLQNEVNRQGVDIEAARKEEERI-ML 178
Query: 212 LE 213
+
Sbjct: 179 RD 180
Score = 141 bits (357), Expect = 5e-38
Identities = 45/212 (21%), Positives = 78/212 (36%), Gaps = 31/212 (14%)
Query: 24 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 83
V + + L + + E + + +GA ++ D T LH A +
Sbjct: 28 VVKRKKTKVKFDDGAVFLAACS-SGDTEEVLRLLERGADINYANVDGL-TALHQACIDDN 85
Query: 84 LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMW 143
+D V L+++GA+ D+EG +H AA G+ I YL+++G +V + G T L
Sbjct: 86 VDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDI 145
Query: 144 --------------------------SAYKVFSLDPTRLLITFGASTTIQDKIHGNVALH 177
++ D + L + + K G ALH
Sbjct: 146 AEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAK-SGGTALH 204
Query: 178 WAIYAKNHVAITT-LVSHTSSLEIPNAQGLTP 208
A AK + + L+ + I + G TP
Sbjct: 205 VAA-AKGYTEVLKLLIQARYDVNIKDYDGWTP 235
Score = 110 bits (278), Expect = 3e-27
Identities = 21/111 (18%), Positives = 39/111 (35%), Gaps = 1/111 (0%)
Query: 24 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 83
+ T LH AA E++K I V+ D TPLH A G
Sbjct: 186 NSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGW-TPLHAAAHWGK 244
Query: 84 LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQD 134
++ +L+++ D ++ G T A + + + + + +
Sbjct: 245 EEACRILVENLCDMEAVNKVGQTAFDVADEDILGYLEELQKKQNLLHSEKR 295
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats,
A-helical domain, structural genomics, NPPSFA; 2.20A
{Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A
1ixv_A 1wg0_A
Length = 228
Score = 149 bits (380), Expect = 5e-42
Identities = 45/192 (23%), Positives = 76/192 (39%), Gaps = 10/192 (5%)
Query: 27 GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDA--IGGDLQATPLHWATRQGHL 84
+ + D + LHW+ EI + +S+ V+ D TP H A G+L
Sbjct: 26 PSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNL 85
Query: 85 DSVVLLIQH--GADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALM 142
+ V L D + ++G TC+H A + +L+ G +V ++D+ L
Sbjct: 86 EVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLH 145
Query: 143 WSAYKVFSLDPTRLLITFGASTT-IQDKIHGNVALHWAIYAKNHVAIT-TLVS-HTSSLE 199
+A SL LL G S QDK G L A+ + H LV + + +
Sbjct: 146 RAASV-GSLKLIELLCGLGKSAVNWQDK-QGWTPLFHALA-EGHGDAAVLLVEKYGAEYD 202
Query: 200 IPNAQGLTPFML 211
+ + +G +
Sbjct: 203 LVDNKGAKAEDV 214
Score = 141 bits (357), Expect = 9e-39
Identities = 42/181 (23%), Positives = 72/181 (39%), Gaps = 12/181 (6%)
Query: 39 TLLHWAAINNRI-EIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADP 97
LH A + N ++ + S+ +++ D + PLHW+ + L+ +
Sbjct: 4 YPLHQACMENEFFKVQELLHSKPSLLLQKDQDGR-IPLHWSVSFQAHEITSFLLSKMENV 62
Query: 98 TLMDS---EGSTCIHQAAQFGHTRIVAYLVAK--GINVNLQDRNGMTALMWSAYKVFSLD 152
L D G T H A G+ +V L + ++N G+T L + K +
Sbjct: 63 NLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGK-KWFE 121
Query: 153 PTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSH-TSSLEIPNAQGLTPFM 210
++ LI GAS I+DK + LH A + + L S++ + QG TP
Sbjct: 122 VSQFLIENGASVRIKDK-FNQIPLHRAAS-VGSLKLIELLCGLGKSAVNWQDKQGWTPLF 179
Query: 211 L 211
Sbjct: 180 H 180
Score = 140 bits (356), Expect = 1e-38
Identities = 40/175 (22%), Positives = 69/175 (39%), Gaps = 13/175 (7%)
Query: 27 GQDVNEPDSET---VTLLHWAAINNRIEIMKYFISQ--GAIVDAIGGDLQATPLHWATRQ 81
++VN D T H A +E++K + ++ I T LH A +
Sbjct: 59 MENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGV-TCLHLAVGK 117
Query: 82 GHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGIN-VNLQDRNGMTA 140
+ LI++GA + D +H+AA G +++ L G + VN QD+ G T
Sbjct: 118 KWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTP 177
Query: 141 LMWSAYKVFSLDPTRLLITF-GASTTIQDKIHGNVALHWAIYAKNHVAITTLVSH 194
L + + D LL+ GA + D G A A+ + +++
Sbjct: 178 LFHALAE-GHGDAAVLLVEKYGAEYDLVDN-KGAKAEDVALN-EQVKKF--FLNN 227
Score = 129 bits (328), Expect = 1e-34
Identities = 36/124 (29%), Positives = 50/124 (40%), Gaps = 3/124 (2%)
Query: 26 AGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLD 85
D+N+ ++ VT LH A E+ ++ I GA V Q PLH A G L
Sbjct: 96 LKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQ-IPLHRAASVGSLK 154
Query: 86 SVVLLIQHG-ADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAK-GINVNLQDRNGMTALMW 143
+ LL G + D +G T + A GH LV K G +L D G A
Sbjct: 155 LIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDV 214
Query: 144 SAYK 147
+ +
Sbjct: 215 ALNE 218
Score = 92.1 bits (230), Expect = 2e-21
Identities = 26/103 (25%), Positives = 49/103 (47%), Gaps = 6/103 (5%)
Query: 24 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQG-AIVDAIGGDLQATPLHWATRQG 82
+E G V D LH AA +++++ G + V+ TPL A +G
Sbjct: 127 IENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGW-TPLFHALAEG 185
Query: 83 HLDSVVLLI-QHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLV 124
H D+ VLL+ ++GA+ L+D++G+ A + ++ + +
Sbjct: 186 HGDAAVLLVEKYGAEYDLVDNKGAKAEDVAL---NEQVKKFFL 225
Score = 81.7 bits (203), Expect = 7e-18
Identities = 22/114 (19%), Positives = 42/114 (36%), Gaps = 8/114 (7%)
Query: 104 GSTCIHQAAQFGHTRIVA-YLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGA 162
+ +HQA V L +K + +D++G L WS + + T L++
Sbjct: 2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSF-QAHEITSFLLSKME 60
Query: 163 STTIQDKI--HGNVALHWAIYAKNHVAIT-TLVSHTSSLEI--PNAQGLTPFML 211
+ + D G H A ++ + +L ++ QG+T L
Sbjct: 61 NVNLDDYPDDSGWTPFHIACS-VGNLEVVKSLYDRPLKPDLNKITNQGVTCLHL 113
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix,
SH3, ankyrin repeat, signaling protein, ANK repeat,
cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB:
3ehq_A
Length = 222
Score = 149 bits (378), Expect = 8e-42
Identities = 39/182 (21%), Positives = 69/182 (37%), Gaps = 11/182 (6%)
Query: 29 DVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVV 88
D+ + T R ++ V PLH A ++G+L +
Sbjct: 37 DIIYITDMSDTNWWKGTSKGRTGLIP-----SNYVAEQAES-IDNPLHEAAKRGNLSWLR 90
Query: 89 LLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAK-GINVNLQDRNGMTALMWSAYK 147
+ + +D GST ++ A GH IV L + I +N Q++ G TAL +A+K
Sbjct: 91 ECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWK 150
Query: 148 VFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGL 206
D +LL+ GA T +++ +A A ++ + + NA+
Sbjct: 151 G-YADIVQLLLAKGARTDLRNI-EKKLAFDMATN-AACASLLKKKQGTDAVRTLSNAEDY 207
Query: 207 TP 208
Sbjct: 208 LD 209
Score = 147 bits (372), Expect = 6e-41
Identities = 32/157 (20%), Positives = 55/157 (35%), Gaps = 4/157 (2%)
Query: 24 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 83
+ V E LH AA + ++ + V+ + T L+WA GH
Sbjct: 60 LIPSNYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGS-TALYWACHGGH 118
Query: 84 LDSVVLLIQH-GADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALM 142
D V +L + + G T +H AA G+ IV L+AKG +L++ A
Sbjct: 119 KDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFD 178
Query: 143 WSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWA 179
+ + A T+ + + +
Sbjct: 179 MATNAA-CASLLKKKQGTDAVRTLSNA-EDYLDDEDS 213
Score = 132 bits (335), Expect = 8e-36
Identities = 33/175 (18%), Positives = 61/175 (34%), Gaps = 11/175 (6%)
Query: 39 TLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPT 98
+ A + + I D+ T T +G +
Sbjct: 14 VKVFRALYTFEPRTPDELYIEEGDIIYI-TDMSDTNWWKGTSKGRTG-----LIPSNYVA 67
Query: 99 LMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLI 158
+H+AA+ G+ + + + VN D+ G TAL W+ + D +L
Sbjct: 68 EQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGG-HKDIVEMLF 126
Query: 159 T-FGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTPFML 211
T Q+K G+ ALH A + K + I L++ + ++ N + F +
Sbjct: 127 TQPNIELNQQNK-LGDTALHAAAW-KGYADIVQLLLAKGARTDLRNIEKKLAFDM 179
Score = 132 bits (334), Expect = 1e-35
Identities = 27/126 (21%), Positives = 44/126 (34%), Gaps = 2/126 (1%)
Query: 23 CVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQ-GAIVDAIGGDLQATPLHWATRQ 81
C++ VN D T L+WA +I++ +Q ++ L T LH A +
Sbjct: 92 CLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQ-QNKLGDTALHAAAWK 150
Query: 82 GHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTAL 141
G+ D V LL+ GA L + E A ++ L +
Sbjct: 151 GYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAEDYLDD 210
Query: 142 MWSAYK 147
S +
Sbjct: 211 EDSDLE 216
Score = 99.2 bits (248), Expect = 7e-24
Identities = 17/92 (18%), Positives = 34/92 (36%), Gaps = 1/92 (1%)
Query: 25 EAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHL 84
+ ++N+ + T LH AA +I++ +++GA D + + AT
Sbjct: 128 QPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKK-LAFDMATNAACA 186
Query: 85 DSVVLLIQHGADPTLMDSEGSTCIHQAAQFGH 116
+ A TL ++E + H
Sbjct: 187 SLLKKKQGTDAVRTLSNAEDYLDDEDSDLEHH 218
Score = 72.7 bits (179), Expect = 8e-15
Identities = 13/106 (12%), Positives = 29/106 (27%), Gaps = 9/106 (8%)
Query: 104 GSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGAS 163
G + +A R L + ++ T K R +
Sbjct: 12 GQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKG------RTGLIPSNY 65
Query: 164 TTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTP 208
Q + + LH A + +++ + + + + G T
Sbjct: 66 VAEQAE-SIDNPLHEAAK-RGNLSWLRECLDNRVGVNGLDKAGSTA 109
Score = 61.5 bits (150), Expect = 6e-11
Identities = 6/62 (9%), Positives = 15/62 (24%), Gaps = 1/62 (1%)
Query: 24 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 83
+ G + + E A ++K A+ + + + H
Sbjct: 160 LAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAE-DYLDDEDSDLEHH 218
Query: 84 LD 85
Sbjct: 219 HH 220
Score = 41.1 bits (97), Expect = 4e-04
Identities = 7/81 (8%), Positives = 15/81 (18%), Gaps = 7/81 (8%)
Query: 131 NLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITT 190
+ G + + Y F L + K T
Sbjct: 6 PKPVKPGQVKVFRALYT-FEPRTPDELYIEEGDIIYITD-MSDTNWWKGTS-KGR----T 58
Query: 191 LVSHTSSLEIPNAQGLTPFML 211
+ ++ + P
Sbjct: 59 GLIPSNYVAEQAESIDNPLHE 79
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch,
ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB:
3ixe_A 2kbx_A
Length = 179
Score = 147 bits (374), Expect = 9e-42
Identities = 35/164 (21%), Positives = 64/164 (39%), Gaps = 8/164 (4%)
Query: 34 DSETVTLLHWAAINNRIEIMKYFISQGAI-VDAIGGDLQ-ATPLHWATRQGHLDSVVLLI 91
E + + ++ ++ ++ GD +PLHWA R+G V +LI
Sbjct: 2 SPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQ--GDDHGFSPLHWACREGRSAVVEMLI 59
Query: 92 QHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSL 151
GA +M+ T +H AA GH IV L+ ++N + +G L ++ +
Sbjct: 60 MRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFW-GQD 118
Query: 152 DPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSH 194
L+ GA +I +K +G + + A +
Sbjct: 119 QVAEDLVANGALVSICNK-YGEMPVDKAKA-PLRELLRERAEKM 160
Score = 143 bits (363), Expect = 4e-40
Identities = 37/138 (26%), Positives = 62/138 (44%), Gaps = 6/138 (4%)
Query: 27 GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDA--IGGDLQATPLHWATRQGHL 84
D+N+ D + LHWA R +++ I +GA ++ G D TPLH A GH
Sbjct: 29 ENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDD---TPLHLAASHGHR 85
Query: 85 DSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWS 144
D V L+Q+ AD ++ G+ +H A +G ++ LVA G V++ ++ G + +
Sbjct: 86 DIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKA 145
Query: 145 AYKVFSLDPTRLLITFGA 162
+ G
Sbjct: 146 KAPL-RELLRERAEKMGQ 162
Score = 115 bits (292), Expect = 3e-30
Identities = 23/108 (21%), Positives = 44/108 (40%), Gaps = 1/108 (0%)
Query: 24 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 83
+ G +N + T LH AA + +I++ + A ++A+ PLH+A G
Sbjct: 59 IMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGN-VPLHYACFWGQ 117
Query: 84 LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVN 131
L+ +GA ++ + G + +A + G N+N
Sbjct: 118 DQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQNLN 165
Score = 93.3 bits (233), Expect = 3e-22
Identities = 14/95 (14%), Positives = 30/95 (31%), Gaps = 7/95 (7%)
Query: 24 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 83
++ D+N + LH+A + ++ + ++ GA+V + P+ A
Sbjct: 92 LQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGE-MPVDKAKAPLR 150
Query: 84 LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTR 118
+ G + G TR
Sbjct: 151 ELLRERAEKMGQNL------NRIPYKDTFWKGTTR 179
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural
genomics of pathogenic protozoa consortium, SGPP, ANK
repeat; 2.90A {Leishmania major}
Length = 364
Score = 152 bits (387), Expect = 2e-41
Identities = 45/211 (21%), Positives = 71/211 (33%), Gaps = 33/211 (15%)
Query: 29 DVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVV 88
+ + D E + +H AA + + ++ I G T LH A + G +D+
Sbjct: 12 NRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGC-TALHLACKFGCVDTAK 70
Query: 89 LLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKG--------------------- 127
L G +L G IH A T +V LV
Sbjct: 71 YLASVGEVHSLWH--GQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNE 128
Query: 128 INVNLQDRNGMTALMWSAYK-VFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHV 186
I +++ G TAL W L+ ++L+ GAS T +DK L A+ +
Sbjct: 129 IGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDK-ADETPLMRAME-FRNR 186
Query: 187 AITTL------VSHTSSLEIPNAQGLTPFML 211
L + L+ N QG +
Sbjct: 187 EALDLMMDTVPSKSSLRLDYANKQGNSHLHW 217
Score = 141 bits (357), Expect = 3e-37
Identities = 29/206 (14%), Positives = 59/206 (28%), Gaps = 21/206 (10%)
Query: 24 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFI-----SQGAIVDAIGGDLQATPLHWA 78
V+ G D T L A E + + +D + LHWA
Sbjct: 160 VQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGN-SHLHWA 218
Query: 79 TRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDR--- 135
D + ++ G D + D+E + ++ + + + L+ K +Q
Sbjct: 219 ILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYH 278
Query: 136 NGMTALMWSAYKVFSL---------DPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHV 186
NG T L + + + +LL G K
Sbjct: 279 NGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKLDEVVRSLN-TGAGGAVKRKK-KAAP 336
Query: 187 AIT-TLVSHTSSLEIPNAQGLTPFML 211
A+ ++ ++ + + +
Sbjct: 337 AVKRMKLAPSAPVRTRSRSRARSSAV 362
Score = 128 bits (325), Expect = 6e-33
Identities = 37/196 (18%), Positives = 71/196 (36%), Gaps = 27/196 (13%)
Query: 24 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQG- 82
VE ++ + + E+ + G+ V G T LHW G
Sbjct: 104 VEGAKERGQ------MPESLLNECDEREVNEI----GSHVKHCKGQ---TALHWCVGLGP 150
Query: 83 -HLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLV-----AKGINVNLQDRN 136
+L+ + +L+Q GA PT D T + +A +F + + ++ + ++ ++
Sbjct: 151 EYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQ 210
Query: 137 GMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHT 195
G + L W+ D + G ++D V L+ ++ V +T L+ T
Sbjct: 211 GNSHLHWAILI-NWEDVAMRFVEMGIDVNMEDN-EHTVPLYLSVR-AAMVLLTKELLQKT 267
Query: 196 SSLEIPNAQ---GLTP 208
I G T
Sbjct: 268 DVFLIQACPYHNGTTV 283
Score = 115 bits (290), Expect = 3e-28
Identities = 36/182 (19%), Positives = 60/182 (32%), Gaps = 33/182 (18%)
Query: 59 QGAIVDAIGGDLQA------TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 112
G++ D + +H A R+G D V LI+ G PT+ + G T +H A
Sbjct: 2 PGSMTDFPKLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLAC 61
Query: 113 QFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGAST-------- 164
+FG YL + G + +G + + D L+
Sbjct: 62 KFGCVDTAKYLASVGEVHS--LWHGQKPIHLAVMA-NKTDLVVALVEGAKERGQMPESLL 118
Query: 165 -------------TIQDKIHGNVALHWAI-YAKNHVAIT-TLVSHTSSLEIPNAQGLTPF 209
++ G ALHW + ++ + LV +S + TP
Sbjct: 119 NECDEREVNEIGSHVKHC-KGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPL 177
Query: 210 ML 211
M
Sbjct: 178 MR 179
Score = 90.3 bits (225), Expect = 8e-20
Identities = 7/85 (8%), Positives = 21/85 (24%), Gaps = 1/85 (1%)
Query: 27 GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDS 86
G V + + AA ++ E+++ + V ++
Sbjct: 280 GTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKLDEVVRSLNTGA-GGAVKRKKKAAPAV 338
Query: 87 VVLLIQHGADPTLMDSEGSTCIHQA 111
+ + A + +
Sbjct: 339 KRMKLAPSAPVRTRSRSRARSSAVS 363
>1awc_B Protein (GA binding protein beta 1); complex (transcription
regulation/DNA), DNA-binding, nuclear protein, ETS
domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus
musculus} SCOP: d.211.1.1
Length = 153
Score = 145 bits (368), Expect = 3e-41
Identities = 41/153 (26%), Positives = 64/153 (41%), Gaps = 5/153 (3%)
Query: 39 TLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPT 98
L AA + + ++ ++ GA L +PLH A + GH + +L++ G
Sbjct: 4 KKLLEAARAGQDDEVRILMANGAPFTT--DWLGTSPLHLAAQYGHFSTTEVLLRAGVSRD 61
Query: 99 LMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLI 158
T +H AA GH IV L+ G +VN +D MTAL W+ + LLI
Sbjct: 62 ARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEH-NHQEVVELLI 120
Query: 159 TFGASTTIQDKIHGNVALHWAIYAKNHVAITTL 191
+GA Q K A +I + + +
Sbjct: 121 KYGADVHTQSK-FCKTAFDISID-NGNEDLAEI 151
Score = 129 bits (326), Expect = 3e-35
Identities = 35/121 (28%), Positives = 51/121 (42%), Gaps = 2/121 (1%)
Query: 27 GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDS 86
G D + LH AA + + G DA + TPLH A +GH +
Sbjct: 25 GAPFTT-DWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDR-TPLHMAASEGHANI 82
Query: 87 VVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAY 146
V +L++HGAD D T +H A + H +V L+ G +V+ Q + TA S
Sbjct: 83 VEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISID 142
Query: 147 K 147
Sbjct: 143 N 143
Score = 110 bits (279), Expect = 8e-29
Identities = 37/140 (26%), Positives = 63/140 (45%), Gaps = 5/140 (3%)
Query: 73 TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 132
L A R G D V +L+ +GA T D G++ +H AAQ+GH L+ G++ +
Sbjct: 4 KKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDA 62
Query: 133 QDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TL 191
+ + T L +A + + +L+ GA +D ALHWA NH + L
Sbjct: 63 RTKVDRTPLHMAASE-GHANIVEVLLKHGADVNAKDM-LKMTALHWATE-HNHQEVVELL 119
Query: 192 VSHTSSLEIPNAQGLTPFML 211
+ + + + + T F +
Sbjct: 120 IKYGADVHTQSKFCKTAFDI 139
Score = 105 bits (264), Expect = 1e-26
Identities = 29/100 (29%), Positives = 41/100 (41%), Gaps = 1/100 (1%)
Query: 24 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 83
+ AG + T LH AA I++ + GA V+A T LHWAT H
Sbjct: 54 LRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKM-TALHWATEHNH 112
Query: 84 LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYL 123
+ V LLI++GAD T + G+ + L
Sbjct: 113 QEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152
Score = 78.6 bits (195), Expect = 2e-17
Identities = 24/110 (21%), Positives = 40/110 (36%), Gaps = 5/110 (4%)
Query: 103 EGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGA 162
+ + +AA+ G V L+A G D G + L +A T +L+ G
Sbjct: 1 DLGKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQY-GHFSTTEVLLRAGV 58
Query: 163 STTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTPFML 211
S + K LH A + H I L+ H + + + +T
Sbjct: 59 SRDARTK-VDRTPLHMAAS-EGHANIVEVLLKHGADVNAKDMLKMTALHW 106
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate
recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo
sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A
3twq_A 3twu_A 2y0i_S*
Length = 165
Score = 145 bits (369), Expect = 3e-41
Identities = 47/170 (27%), Positives = 69/170 (40%), Gaps = 10/170 (5%)
Query: 27 GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAI-VDAIGGDLQATPLHWATRQGHLD 85
G N +++ L AA +E +K + ++ I G TPLH+A +
Sbjct: 1 GAMGNS-EADRQ--LLEAAKAGDVETVKKLCTVQSVNCRDIEGRQS-TPLHFAAGYNRVS 56
Query: 86 SVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSA 145
V L+QHGAD D G +H A +GH + LV G VN+ D T L +A
Sbjct: 57 VVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAA 116
Query: 146 YKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSH 194
K + +LL+ GA T +++ GN L I L
Sbjct: 117 AK-GKYEICKLLLQHGADPTKKNR-DGNTPLDLV--KDGDTDIQDLLRGD 162
Score = 138 bits (351), Expect = 1e-38
Identities = 42/138 (30%), Positives = 62/138 (44%), Gaps = 7/138 (5%)
Query: 27 GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDA--IGGDLQATPLHWATRQGHL 84
+ + + T LH+AA NR+ +++Y + GA V A GG PLH A GH
Sbjct: 32 SVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGL---VPLHNACSYGHY 88
Query: 85 DSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWS 144
+ LL++HGA + D T +H+AA G I L+ G + ++R+G T L
Sbjct: 89 EVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLV 148
Query: 145 AYKVFSLDPTRLLITFGA 162
D LL A
Sbjct: 149 KDG--DTDIQDLLRGDAA 164
Score = 112 bits (283), Expect = 3e-29
Identities = 37/158 (23%), Positives = 65/158 (41%), Gaps = 9/158 (5%)
Query: 60 GAIVDAIGGDLQATPLHWATRQGHLDSVVLLI-QHGADPTLMDSEGSTCIHQAAQFGHTR 118
GA+ ++ L A + G +++V L + ++ ST +H AA +
Sbjct: 1 GAMGNSEAD----RQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVS 56
Query: 119 IVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHW 178
+V YL+ G +V+ +D+ G+ L + + LL+ GA + D LH
Sbjct: 57 VVEYLLQHGADVHAKDKGGLVPLHNACSYG-HYEVAELLVKHGAVVNVADL-WKFTPLHE 114
Query: 179 AIYAKNHVAIT-TLVSHTSSLEIPNAQGLTPFMLLEEN 215
A K I L+ H + N G TP L+++
Sbjct: 115 AAA-KGKYEICKLLLQHGADPTKKNRDGNTPLDLVKDG 151
Score = 76.3 bits (189), Expect = 2e-16
Identities = 24/72 (33%), Positives = 28/72 (38%), Gaps = 2/72 (2%)
Query: 24 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 83
V+ G VN D T LH AA + EI K + GA D TPL + G
Sbjct: 95 VKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGN-TPLDLV-KDGD 152
Query: 84 LDSVVLLIQHGA 95
D LL A
Sbjct: 153 TDIQDLLRGDAA 164
Score = 42.4 bits (101), Expect = 9e-05
Identities = 6/36 (16%), Positives = 12/36 (33%), Gaps = 1/36 (2%)
Query: 27 GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAI 62
G D + + + T L + +I A+
Sbjct: 131 GADPTKKNRDGNTPLDLVK-DGDTDIQDLLRGDAAL 165
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle
inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A
{Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A
1mx2_A 1mx6_A
Length = 162
Score = 145 bits (369), Expect = 3e-41
Identities = 36/158 (22%), Positives = 62/158 (39%), Gaps = 7/158 (4%)
Query: 39 TLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPT 98
L AA +E + + V+A G + T L + G+ + L+ GA+P
Sbjct: 7 NELASAAARGDLEQLTSLLQNNVNVNAQNGFGR-TALQVM-KLGNPEIARRLLLRGANPD 64
Query: 99 LMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLI 158
L D G IH AA+ G + L+ +VN++D G L +A + L L+
Sbjct: 65 LKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEG-HLRVVEFLV 123
Query: 159 TFGAST-TIQDKIHGNVALHWAIYAKNHVAIT-TLVSH 194
AS ++ G+ A A + + ++
Sbjct: 124 KHTASNVGHRNH-KGDTACDLARL-YGRNEVVSLMQAN 159
Score = 130 bits (330), Expect = 1e-35
Identities = 39/140 (27%), Positives = 64/140 (45%), Gaps = 4/140 (2%)
Query: 24 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 83
++ +VN + T L + N EI + + +GA D +H A R G
Sbjct: 25 LQNNVNVNAQNGFGRTALQVMKLGN-PEIARRLLLRGANPDLKDRTGF-AVIHDAARAGF 82
Query: 84 LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKG-INVNLQDRNGMTALM 142
LD++ L++ AD + D+EG+ +H AA+ GH R+V +LV NV ++ G TA
Sbjct: 83 LDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACD 142
Query: 143 WSAYKVFSLDPTRLLITFGA 162
+ + L+ GA
Sbjct: 143 LARLY-GRNEVVSLMQANGA 161
Score = 83.6 bits (208), Expect = 4e-19
Identities = 27/113 (23%), Positives = 46/113 (40%), Gaps = 5/113 (4%)
Query: 100 MDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLIT 159
M + AA G + L+ +NVN Q+ G TAL + + R L+
Sbjct: 1 MAEPWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLG--NPEIARRLLL 58
Query: 160 FGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTPFML 211
GA+ ++D+ G +H A + TL+ + + I + +G P L
Sbjct: 59 RGANPDLKDR-TGFAVIHDAAR-AGFLDTLQTLLEFQADVNIEDNEGNLPLHL 109
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin
repeat, signaling protein; NMR {Mus musculus} SCOP:
i.11.1.1
Length = 136
Score = 143 bits (363), Expect = 8e-41
Identities = 28/138 (20%), Positives = 51/138 (36%), Gaps = 4/138 (2%)
Query: 26 AGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLD 85
++ + L AA ++E ++ + GA +A+ + P+ G
Sbjct: 1 GSPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGR-RPIQVMM-MGSAQ 58
Query: 86 SVVLLIQHGADPTLMDSEGSTC-IHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWS 144
LL+ HGA+P D T +H AA+ G + L G +++ D G + +
Sbjct: 59 VAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLA 118
Query: 145 AYKVFSLDPTRLLITFGA 162
+ D R L
Sbjct: 119 EEQG-HRDIARYLHAATG 135
Score = 117 bits (297), Expect = 2e-31
Identities = 31/137 (22%), Positives = 54/137 (39%), Gaps = 7/137 (5%)
Query: 60 GAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRI 119
+ +GG L A +G +++V L++ GADP ++ G I G ++
Sbjct: 2 SPGIHMLGGSSD-AGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQV 59
Query: 120 VAYLVAKGINVNLQDRNGMT-ALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHW 178
L+ G N D +T + +A + LD +L GA + D G + +
Sbjct: 60 AELLLLHGAEPNCADPATLTRPVHDAAREG-FLDTLVVLHRAGARLDVCDA-WGRLPVDL 117
Query: 179 AIYAKNHVAIT-TLVSH 194
A + H I L +
Sbjct: 118 AEE-QGHRDIARYLHAA 133
Score = 115 bits (291), Expect = 1e-30
Identities = 27/104 (25%), Positives = 45/104 (43%), Gaps = 1/104 (0%)
Query: 24 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 83
+EAG D N + + ++ + + GA + P+H A R+G
Sbjct: 32 LEAGADPNALNRFGRRPIQVMM-MGSAQVAELLLLHGAEPNCADPATLTRPVHDAAREGF 90
Query: 84 LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKG 127
LD++V+L + GA + D+ G + A + GH I YL A
Sbjct: 91 LDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAAT 134
Score = 92.1 bits (230), Expect = 2e-22
Identities = 23/119 (19%), Positives = 38/119 (31%), Gaps = 4/119 (3%)
Query: 94 GADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDP 153
++ + AA G V L+ G + N +R G + S
Sbjct: 2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMMG--SAQV 59
Query: 154 TRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTPFML 211
LL+ GA D +H A + + L + L++ +A G P L
Sbjct: 60 AELLLLHGAEPNCADPATLTRPVHDAAR-EGFLDTLVVLHRAGARLDVCDAWGRLPVDL 117
Score = 87.1 bits (217), Expect = 1e-20
Identities = 19/74 (25%), Positives = 29/74 (39%), Gaps = 2/74 (2%)
Query: 24 VEAGQDVNEPDSETVTL-LHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQG 82
+ G + N D T+T +H AA ++ + GA +D + P+ A QG
Sbjct: 64 LLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGR-LPVDLAEEQG 122
Query: 83 HLDSVVLLIQHGAD 96
H D L D
Sbjct: 123 HRDIARYLHAATGD 136
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase,
cyclin dependent kinase inhibitory protein, CDK, cell
cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A
1dc2_A 2a5e_A
Length = 156
Score = 143 bits (363), Expect = 2e-40
Identities = 34/166 (20%), Positives = 56/166 (33%), Gaps = 13/166 (7%)
Query: 24 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 83
+E + S L AA R+E ++ + GA +A + P+ G
Sbjct: 1 MEPAAGSSMEPSADW--LATAAARGRVEEVRALLEAGANPNAPNSYGR-RPIQVMMM-GS 56
Query: 84 LDSVVLLIQHGADPTLMDSEGSTC-IHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALM 142
LL+ HGA+P D T +H AA+ G + L G ++++D G +
Sbjct: 57 ARVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVD 116
Query: 143 WSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAI 188
+ D R L T + A+ I
Sbjct: 117 LAEELG-HRDVARYLRAAAGGTRGSNH------ARIDA-AEGPSDI 154
Score = 116 bits (294), Expect = 7e-31
Identities = 32/154 (20%), Positives = 54/154 (35%), Gaps = 9/154 (5%)
Query: 57 ISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGH 116
+ A L A +G ++ V L++ GA+P +S G I G
Sbjct: 1 MEPAAGSSMEPSA---DWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMM-GS 56
Query: 117 TRIVAYLVAKGINVNLQDRNGMT-ALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVA 175
R+ L+ G N D +T + +A + F LD +L GA ++D G +
Sbjct: 57 ARVAELLLLHGAEPNCADPATLTRPVHDAAREGF-LDTLVVLHRAGARLDVRDA-WGRLP 114
Query: 176 LHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTP 208
+ A H + L + N +
Sbjct: 115 VDLAEE-LGHRDVARYLRAAAGGTRGSNHARIDA 147
Score = 99.1 bits (248), Expect = 1e-24
Identities = 22/98 (22%), Positives = 33/98 (33%), Gaps = 7/98 (7%)
Query: 24 VEAGQDVNEPDSETVTL-LHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQG 82
+ G + N D T+T +H AA ++ + GA +D + P+ A G
Sbjct: 64 LLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGR-LPVDLAEELG 122
Query: 83 HLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIV 120
H D L GS A G + I
Sbjct: 123 HRDVARYLRAAAGGT-----RGSNHARIDAAEGPSDIP 155
Score = 93.3 bits (233), Expect = 2e-22
Identities = 24/122 (19%), Positives = 41/122 (33%), Gaps = 6/122 (4%)
Query: 91 IQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFS 150
++ A ++ + + AA G V L+ G N N + G + S
Sbjct: 1 MEPAAGSSMEP--SADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMG--S 56
Query: 151 LDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTPF 209
LL+ GA D +H A + + L + L++ +A G P
Sbjct: 57 ARVAELLLLHGAEPNCADPATLTRPVHDAAR-EGFLDTLVVLHRAGARLDVRDAWGRLPV 115
Query: 210 ML 211
L
Sbjct: 116 DL 117
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6
ATPase, P-benzoyl-L-phenylalanine, PBPA, amber
suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A
2dwz_A* 1tr4_A 1uoh_A 1qym_A
Length = 231
Score = 145 bits (367), Expect = 3e-40
Identities = 55/203 (27%), Positives = 87/203 (42%), Gaps = 7/203 (3%)
Query: 14 ELTKVFVGKCVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQAT 73
EL + + D ++ T LHWA EI+++ + G V+ +
Sbjct: 21 ELKERILAD----KSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGW-S 75
Query: 74 PLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQ 133
PLH A G + V L+ GA ++ G T +H AA I L+ G N + +
Sbjct: 76 PLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAK 135
Query: 134 DRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVS 193
D TA+ +A K +L +L+ + AST IQD GN LH A + LV+
Sbjct: 136 DHYDATAMHRAAAKG-NLKMVHILLFYKASTNIQDT-EGNTPLHLACDEERVEEAKFLVT 193
Query: 194 HTSSLEIPNAQGLTPFMLLEENI 216
+S+ I N + TP + + +
Sbjct: 194 QGASIYIENKEEKTPLQVAKGGL 216
Score = 144 bits (364), Expect = 9e-40
Identities = 48/177 (27%), Positives = 80/177 (45%), Gaps = 3/177 (1%)
Query: 39 TLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPT 98
+ + A E+ + ++ ++ D T LHWA GH + V L+Q G
Sbjct: 9 MICNLAYSGKLDELKERILADKSLATRTDQD-SRTALHWACSAGHTEIVEFLLQLGVPVN 67
Query: 99 LMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLI 158
D G + +H AA G IV L+ KG +VN ++NG T L ++A K + +L+
Sbjct: 68 DKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASK-NRHEIAVMLL 126
Query: 159 TFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEEN 215
GA+ +D + A+H A N + L+ + +S I + +G TP L +
Sbjct: 127 EGGANPDAKDH-YDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDE 182
Score = 124 bits (313), Expect = 9e-33
Identities = 49/171 (28%), Positives = 85/171 (49%), Gaps = 5/171 (2%)
Query: 24 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 83
++ G VN+ D + LH AA EI+K + +GA V+A+ + TPLH+A +
Sbjct: 60 LQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQN-GCTPLHYAASKNR 118
Query: 84 LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMW 143
+ V+L++ GA+P D +T +H+AA G+ ++V L+ + N+QD G T L
Sbjct: 119 HEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHL 178
Query: 144 SAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSH 194
+ + ++ + L+T GAS I++K L A I ++
Sbjct: 179 ACDEE-RVEEAKFLVTQGASIYIENK-EEKTPLQVA--KGGLGLILKRLAE 225
Score = 89.9 bits (223), Expect = 1e-20
Identities = 22/109 (20%), Positives = 46/109 (42%), Gaps = 3/109 (2%)
Query: 24 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 83
+E G + + D T +H AA ++++ + A + + TPLH A +
Sbjct: 126 LEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGN-TPLHLACDEER 184
Query: 84 LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 132
++ L+ GA + + E T + A G ++ +A+G ++
Sbjct: 185 VEEAKFLVTQGASIYIENKEEKTPLQVAK--GGLGLILKRLAEGEEASM 231
Score = 80.7 bits (199), Expect = 2e-17
Identities = 20/112 (17%), Positives = 34/112 (30%), Gaps = 2/112 (1%)
Query: 104 GSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGAS 163
+ A + ++A D++ TAL W+ + L+ G
Sbjct: 7 NIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAG-HTEIVEFLLQLGVP 65
Query: 164 TTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEEN 215
+D G LH A A + L+ + + N G TP
Sbjct: 66 VNDKDD-AGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASK 116
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein
complex, transcription factors, nuclear localization,
DNA binding protein; 2.05A {Mus musculus} SCOP:
d.211.1.1 PDB: 1k3z_D
Length = 282
Score = 146 bits (371), Expect = 5e-40
Identities = 33/196 (16%), Positives = 57/196 (29%), Gaps = 18/196 (9%)
Query: 28 QDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSV 87
+ ++ + T LH AAI ++ + GA V T LH A R
Sbjct: 36 EYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERG-GHTALHLACRVRAHTCA 94
Query: 88 VLLIQHGADPTLMDSEGSTC--------------IHQAAQFGHTRIVAYLVAKGINVNLQ 133
+L+Q S+ + + + +
Sbjct: 95 CVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAE 154
Query: 134 DRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLV 192
+ +G T L + + RLL GA + G LH A+ ++ L+
Sbjct: 155 NYDGHTPLHVAVIH-KDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVE-AQAASVLELLL 212
Query: 193 SHTSSLEIPNAQGLTP 208
+ G TP
Sbjct: 213 KAGADPTARMYGGRTP 228
Score = 143 bits (362), Expect = 9e-39
Identities = 32/203 (15%), Positives = 55/203 (27%), Gaps = 18/203 (8%)
Query: 24 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQA----------- 72
AG V + T LH A + D
Sbjct: 65 YAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTS 124
Query: 73 -TPLHWATRQGHLDSVV-LLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINV 130
P ++ + + +G T +H A +V L G ++
Sbjct: 125 HAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADL 184
Query: 131 NLQDRN-GMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT 189
N + G T L + + LL+ GA T + G L A+ + + +
Sbjct: 185 NKPEPTCGRTPLHLAVEA-QAASVLELLLKAGADPTARMY-GGRTPLGSALL-RPNPILA 241
Query: 190 -TLVSHTSSLEIPNAQGLTPFML 211
L +H + L+P
Sbjct: 242 RLLRAHGAPEPEDGGDKLSPCSS 264
Score = 142 bits (360), Expect = 2e-38
Identities = 27/124 (21%), Positives = 46/124 (37%)
Query: 24 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 83
+ + + + T LH A I+ E+++ GA ++ TPLH A
Sbjct: 145 EDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQA 204
Query: 84 LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMW 143
+ LL++ GADPT G T + A + + L A G + ++
Sbjct: 205 ASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSPCSS 264
Query: 144 SAYK 147
S
Sbjct: 265 SGSD 268
Score = 136 bits (344), Expect = 2e-36
Identities = 33/190 (17%), Positives = 55/190 (28%), Gaps = 19/190 (10%)
Query: 39 TLLHWAAINNRIEIMKYFISQGAIVDAI--GGDLQATPLHWATRQGHLDSVVLLIQHGAD 96
T LH A I+ + + + A + + DL T LH A G +V L GA
Sbjct: 11 TALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAG 70
Query: 97 PTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQD-------------RNGMTALMW 143
+ + G T +H A + L+ +
Sbjct: 71 VLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAV 130
Query: 144 SAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPN 202
+ + + ++ G+ LH A+ + L + L P
Sbjct: 131 DSQPNPENEEEPRDEDWRLQLEAENY-DGHTPLHVAVI-HKDAEMVRLLRDAGADLNKPE 188
Query: 203 A-QGLTPFML 211
G TP L
Sbjct: 189 PTCGRTPLHL 198
Score = 103 bits (260), Expect = 7e-25
Identities = 21/98 (21%), Positives = 36/98 (36%), Gaps = 2/98 (2%)
Query: 24 VEAGQDVNEPDSET-VTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQG 82
+AG D+N+P+ T LH A +++ + GA A + TPL A +
Sbjct: 178 RDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGR-TPLGSALLRP 236
Query: 83 HLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIV 120
+ LL HGA + + + +
Sbjct: 237 NPILARLLRAHGAPEPEDGGDKLSPCSSSGSDSDSDNR 274
Score = 80.7 bits (200), Expect = 4e-17
Identities = 23/112 (20%), Positives = 38/112 (33%), Gaps = 7/112 (6%)
Query: 101 DSEGSTCIHQAAQFGHTRIVAYLVAKGIN---VNLQDRNGMTALMWSAYKVFSLDPTRLL 157
+G T +H A H + +L+ ++LQ+ G TAL +A L
Sbjct: 6 TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILG-EASTVEKL 64
Query: 158 ITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTP 208
GA + ++ G+ ALH A L+ S +
Sbjct: 65 YAAGAGVLVAER-GGHTALHLACR-VRAHTCACVLLQPRPSHPRDASDTYLT 114
Score = 69.9 bits (172), Expect = 2e-13
Identities = 13/71 (18%), Positives = 24/71 (33%), Gaps = 1/71 (1%)
Query: 24 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 83
++AG D T L A + + + + GA GGD +P +
Sbjct: 212 LKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKL-SPCSSSGSDSD 270
Query: 84 LDSVVLLIQHG 94
D+ ++
Sbjct: 271 SDNRDEGDEYD 281
Score = 47.5 bits (114), Expect = 5e-06
Identities = 17/86 (19%), Positives = 27/86 (31%), Gaps = 7/86 (8%)
Query: 130 VNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTT---IQDKIHGNVALHWAIYAKNHV 186
+G TAL + L+ F A +Q+ G ALH A
Sbjct: 2 FGYVTEDGDTALHLAVIHQ-HEPFLDFLLGFSAGHEYLDLQND-LGQTALHLAAI-LGEA 58
Query: 187 AIT-TLVSHTSSLEIPNAQGLTPFML 211
+ L + + + + G T L
Sbjct: 59 STVEKLYAAGAGVLVAERGGHTALHL 84
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor,
cytoplasm, phosphorylation, P53 binding protein, ANK
repeat, SH3 domain; 2.10A {Homo sapiens}
Length = 229
Score = 143 bits (363), Expect = 1e-39
Identities = 37/193 (19%), Positives = 64/193 (33%), Gaps = 8/193 (4%)
Query: 24 VEAGQDVNEPDSET---VTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATR 80
+ + + LL AA+ +E+++ + + + T LH A
Sbjct: 5 LRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGI-TALHNAIC 63
Query: 81 QGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRN-GMT 139
+ V LI GA+ DS G T +H AA T I LV G + + G T
Sbjct: 64 GANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGAT 123
Query: 140 ALMW-SAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSL 198
A Y+ D L S + + AL A+ ++ + ++
Sbjct: 124 AFEKCDPYREGYADCATYLADVEQSMGLMNS-GAVYALWDYS-AEFGDELSFREGESVTV 181
Query: 199 EIPNAQGLTPFML 211
+ T +
Sbjct: 182 LRRDGPEETDWWW 194
Score = 137 bits (346), Expect = 4e-37
Identities = 36/168 (21%), Positives = 61/168 (36%), Gaps = 8/168 (4%)
Query: 24 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 83
V+ D ++P+ E +T LH A I+ + I+ GA V++ TPLH A
Sbjct: 41 VKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHGW-TPLHCAASCND 99
Query: 84 LDSVVLLIQHGADPTLMD-SEGSTCIHQAAQF--GHTRIVAYLVAKGINVNLQDRNGMTA 140
+ L+QHGA S+G+T + + G+ YL ++ L + + A
Sbjct: 100 TVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYA 159
Query: 141 LMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAI 188
L + + D + +D WA
Sbjct: 160 LWDYSAE--FGDELSFREGESVTVLRRDG-PEETDWWWAAL-HGQEGY 203
Score = 129 bits (327), Expect = 1e-34
Identities = 34/160 (21%), Positives = 56/160 (35%), Gaps = 5/160 (3%)
Query: 53 MKYFISQGAIVDAI--GGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQ 110
M+ + + L A G L+ V ++ DP+ + EG T +H
Sbjct: 1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHN 60
Query: 111 AAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKI 170
A + IV +L+ G NVN D +G T L +A L+ GA+
Sbjct: 61 AICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCN-DTVICMALVQHGAAIFATTLS 119
Query: 171 HGNVALHWAIYAKN-HVAITT-LVSHTSSLEIPNAQGLTP 208
G A + + T L S+ + N+ +
Sbjct: 120 DGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYA 159
Score = 73.1 bits (180), Expect = 8e-15
Identities = 14/117 (11%), Positives = 21/117 (17%), Gaps = 6/117 (5%)
Query: 24 VEAGQDVNEPDSET-VTLLHWAAI--NNRIEIMKYFISQGAIVDAIGGDLQATPLHWATR 80
V+ G + T + Y + + L +
Sbjct: 107 VQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAV-YALWDYS- 164
Query: 81 QGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVA-YLVAKGINVNLQDRN 136
D + D T AA G V V Q
Sbjct: 165 AEFGDELSFREGESVTVLRRDGPEETDWWWAALHGQEGYVPRNYFGLFPRVKPQRSK 221
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system,
signal sequence, ankyrin repeat, chromodomain, type I
turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2
k.37.1.1 PDB: 3dep_A 1x32_A
Length = 183
Score = 141 bits (359), Expect = 1e-39
Identities = 33/167 (19%), Positives = 55/167 (32%), Gaps = 10/167 (5%)
Query: 30 VNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVL 89
+ E + A V + TP A R+ ++
Sbjct: 7 GSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSEY----ETPWWTAARKADEQALSQ 62
Query: 90 LIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQD-RNGMTALMWSAYKV 148
L+ D +D G T + A G + V L G +++ +D R G+TAL +A V
Sbjct: 63 LL-EDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYV 121
Query: 149 FSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSH 194
+ L+ GA ++D+ G AL A +
Sbjct: 122 -RPEVVEALVELGADIEVEDE-RGLTALELARE-ILKTTPKGNPMQF 165
Score = 136 bits (344), Expect = 2e-37
Identities = 35/140 (25%), Positives = 53/140 (37%), Gaps = 7/140 (5%)
Query: 24 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 83
DV T AA + + + VDA+ + T L + G
Sbjct: 34 SYIAADVVSEYE---TPWWTAARKADEQALSQLLE-DRDVDAVDEN-GRTALLFVAGLGS 88
Query: 84 LDSVVLLIQHGADPTLMDSE-GSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALM 142
V LL + GAD D G T +H AA + +V LV G ++ ++D G+TAL
Sbjct: 89 DKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALE 148
Query: 143 WSAYKVFSLDPTRLLITFGA 162
+ + P + FG
Sbjct: 149 LAREIL-KTTPKGNPMQFGR 167
Score = 122 bits (308), Expect = 2e-32
Identities = 25/109 (22%), Positives = 41/109 (37%)
Query: 26 AGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLD 85
+DV+ D T L + A + ++ GA +D T LH A +
Sbjct: 65 EDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPE 124
Query: 86 SVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQD 134
V L++ GAD + D G T + A + T + G + L+
Sbjct: 125 VVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEK 173
Score = 118 bits (299), Expect = 3e-31
Identities = 42/154 (27%), Positives = 62/154 (40%), Gaps = 8/154 (5%)
Query: 59 QGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTR 118
I G+ A + GH S V AD + SE T AA+ +
Sbjct: 3 NKIIGSRTAGE-GAMEYLIEWKDGHSPSWVPSSYIAAD---VVSEYETPWWTAARKADEQ 58
Query: 119 IVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHW 178
++ L+ + +V+ D NG TAL++ A S RLL GA +D G ALH
Sbjct: 59 ALSQLL-EDRDVDAVDENGRTALLFVAGL-GSDKCVRLLAEAGADLDHRDMRGGLTALHM 116
Query: 179 AIYAKNHVAIT-TLVSHTSSLEIPNAQGLTPFML 211
A + LV + +E+ + +GLT L
Sbjct: 117 AAG-YVRPEVVEALVELGADIEVEDERGLTALEL 149
Score = 45.9 bits (110), Expect = 7e-06
Identities = 9/42 (21%), Positives = 14/42 (33%)
Query: 24 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDA 65
VE G D+ D +T L A + + G +
Sbjct: 130 VELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGL 171
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix,
ankyrin repeat, gene regulation/signalling protein/DNA
complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Length = 373
Score = 147 bits (373), Expect = 2e-39
Identities = 45/205 (21%), Positives = 77/205 (37%), Gaps = 20/205 (9%)
Query: 23 CVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQG 82
C+ AG DVN D + T L A + R ++ Y + GA + + LH A
Sbjct: 152 CIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSER-SALHQAAANR 210
Query: 83 HLDSVVLLIQH---GADPTLMDSEGSTCIHQAAQFGHT---RIVAYLVAKGINVNL---- 132
+V ++ D +D G T + A LV KG V+
Sbjct: 211 DFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAA 270
Query: 133 ----QDRNGMTALMWSAYKVFSLDPTRLLIT-FGASTTIQDKIHGNVALHWAIYAKNHVA 187
+ G TAL ++A ++ + L+ G++ QD+ G + A + +
Sbjct: 271 RKDSEKYKGRTALHYAAQV-SNMPIVKYLVGEKGSNKDKQDE-DGKTPIMLAAQ-EGRIE 327
Query: 188 IT-TLVSHTSSLEIPNAQGLTPFML 211
+ L+ +S+E +A T L
Sbjct: 328 VVMYLIQQGASVEAVDATDHTARQL 352
Score = 144 bits (365), Expect = 2e-38
Identities = 41/211 (19%), Positives = 70/211 (33%), Gaps = 29/211 (13%)
Query: 24 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGA-IVDAIGGDLQATPLHWATRQG 82
Q EP+ E+ LH A I + + I+D T LHW
Sbjct: 81 HTNLQIPTEPEPESPIKLHTEA-AGSYAITEPITRESVNIIDPRHNR---TVLHWIASNS 136
Query: 83 HLDSVVLLIQH--------GADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQD 134
+ LI H GAD MD + +T + A R+VAYL+ G + + +
Sbjct: 137 SAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYN 196
Query: 135 RNGMTALMWSAYKVFSLDPTRLLI---TFGASTTIQDKIHGNVALHWAIYAKNHVAITT- 190
++ +AL +A ++ D+ +G AL + + + +
Sbjct: 197 KSERSALHQAAAN-RDFGMMVYMLNSTKLKGDIEELDR-NGMTALMIVAHNEGRDQVASA 254
Query: 191 --LVSH--------TSSLEIPNAQGLTPFML 211
LV + + +G T
Sbjct: 255 KLLVEKGAKVDYDGAARKDSEKYKGRTALHY 285
Score = 143 bits (363), Expect = 4e-38
Identities = 59/211 (27%), Positives = 91/211 (43%), Gaps = 27/211 (12%)
Query: 24 VEAGQDVNEPDSETVTLLHWAAINNRIEI--------MKYFISQGAIVDAIGGDLQATPL 75
++ +P T+LHW A N+ E K I+ GA V+A+ D TPL
Sbjct: 113 TRESVNIIDPRHNR-TVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDEN-TPL 170
Query: 76 HWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAK---GINVNL 132
A V L++ GADPT+ + + +HQAA ++ Y++ ++
Sbjct: 171 MLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEE 230
Query: 133 QDRNGMTALMWSAYKVF--SLDPTRLLITFGA--------STTIQDKIHGNVALHWAIYA 182
DRNGMTALM A+ + +LL+ GA + G ALH+A
Sbjct: 231 LDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKY-KGRTALHYAAQ- 288
Query: 183 KNHVAIT-TLVSHT-SSLEIPNAQGLTPFML 211
+++ I LV S+ + + G TP ML
Sbjct: 289 VSNMPIVKYLVGEKGSNKDKQDEDGKTPIML 319
Score = 143 bits (363), Expect = 4e-38
Identities = 49/187 (26%), Positives = 73/187 (39%), Gaps = 20/187 (10%)
Query: 24 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQ---GAIVDAIGGDLQATPLHWATR 80
++AG D + + LH AA N +M Y ++ ++ + + T L
Sbjct: 186 MKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGM-TALMIVAH 244
Query: 81 QGHLDSVV---LLIQHGADPTLM--------DSEGSTCIHQAAQFGHTRIVAYLVA-KGI 128
D V LL++ GA +G T +H AAQ + IV YLV KG
Sbjct: 245 NEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGS 304
Query: 129 NVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAI 188
N + QD +G T +M +A + ++ LI GAS D + A A NH I
Sbjct: 305 NKDKQDEDGKTPIMLAAQEG-RIEVVMYLIQQGASVEAVDA-TDHTARQLAQA-NNHHNI 361
Query: 189 T-TLVSH 194
Sbjct: 362 VDIFDRC 368
Score = 142 bits (359), Expect = 2e-37
Identities = 33/194 (17%), Positives = 57/194 (29%), Gaps = 18/194 (9%)
Query: 30 VNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVL 89
NE ++ N + + + I + LH G
Sbjct: 54 RNELQHYSLYPNPQGYGNGNDFLGDFNHTNLQIPTEPEPE-SPIKLHTEA-AGSYAITEP 111
Query: 90 LIQHGADPTLMDSEGSTCIHQAAQFGHTRIV--------AYLVAKGINVNLQDRNGMTAL 141
+ + + T +H A +A G +VN D + T L
Sbjct: 112 ITRESVNII-DPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPL 170
Query: 142 MWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITT-LVSHTSS--- 197
M + L+ GA TI +K ALH A + +++ T
Sbjct: 171 MLAVLAR-RRRLVAYLMKAGADPTIYNK-SERSALHQAAA-NRDFGMMVYMLNSTKLKGD 227
Query: 198 LEIPNAQGLTPFML 211
+E + G+T M+
Sbjct: 228 IEELDRNGMTALMI 241
Score = 129 bits (327), Expect = 4e-33
Identities = 36/149 (24%), Positives = 60/149 (40%), Gaps = 12/149 (8%)
Query: 25 EAGQDVNEPDSETVTLLHWAAINN---RIEIMKYFISQGAIVDAIGGDLQA-------TP 74
+ D+ E D +T L A N ++ K + +GA VD G + T
Sbjct: 223 KLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTA 282
Query: 75 LHWATRQGHLDSVVLLI-QHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQ 133
LH+A + ++ V L+ + G++ D +G T I AAQ G +V YL+ +G +V
Sbjct: 283 LHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAV 342
Query: 134 DRNGMTALMWSAYKVFSLDPTRLLITFGA 162
D TA + + +
Sbjct: 343 DATDHTARQLAQAN-NHHNIVDIFDRCRP 370
Score = 104 bits (262), Expect = 1e-24
Identities = 31/116 (26%), Positives = 49/116 (42%), Gaps = 10/116 (8%)
Query: 24 VEAGQDVNEPDSETV--------TLLHWAAINNRIEIMKYFISQ-GAIVDAIGGDLQATP 74
VE G V+ + T LH+AA + + I+KY + + G+ D D + TP
Sbjct: 258 VEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGK-TP 316
Query: 75 LHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINV 130
+ A ++G ++ V+ LIQ GA +D+ T A H IV
Sbjct: 317 IMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDRCRPER 372
Score = 94.6 bits (236), Expect = 4e-21
Identities = 26/148 (17%), Positives = 40/148 (27%), Gaps = 23/148 (15%)
Query: 73 TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 132
L A+ G++ +QH Q G+ + +
Sbjct: 39 HSLLEASYDGYIKRQRNELQHY---------SLYPNPQGYGNGNDFLGDFNHTNLQIPTE 89
Query: 133 QDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TL 191
+ L A S T + + I D H LHW + + L
Sbjct: 90 PEPESPIKLHTEAAG--SYAITEPITRESVN--IIDPRHNRTVLHWIAS-NSSAEKSEDL 144
Query: 192 VSHTSSLEI-----PNAQ---GLTPFML 211
+ H + I NA TP ML
Sbjct: 145 IVHEAKECIAAGADVNAMDCDENTPLML 172
Score = 47.6 bits (114), Expect = 7e-06
Identities = 9/41 (21%), Positives = 14/41 (34%)
Query: 24 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVD 64
++ G V D+ T A NN I+ F +
Sbjct: 333 IQQGASVEAVDATDHTARQLAQANNHHNIVDIFDRCRPERE 373
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6,
ankyrin reapeat, ANK RE calcium channel, calcium
transport, calmodulin-binding; 1.70A {Mus musculus}
Length = 232
Score = 142 bits (360), Expect = 4e-39
Identities = 37/195 (18%), Positives = 67/195 (34%), Gaps = 29/195 (14%)
Query: 27 GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQ----ATPLHWATRQG 82
G +V++ + T LH AA+ + +E + + + T LH A
Sbjct: 27 GCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQ 86
Query: 83 HLDSVVLLIQHGAD-------------PTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGIN 129
+++ V L+ GA P + G + AA G IV L+ G +
Sbjct: 87 NVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGAD 146
Query: 130 VNLQDRNGMTALMWSAY---KVFSLDPTRLLITFGA------STTIQDKIHGNVALHWAI 180
+ QD G T L K F+ LL+++ + + G A
Sbjct: 147 IRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNN-QGLTPFKLAG 205
Query: 181 YAKNHVAIT-TLVSH 194
+ ++ + L+
Sbjct: 206 V-EGNIVMFQHLMQK 219
Score = 137 bits (348), Expect = 2e-37
Identities = 54/203 (26%), Positives = 84/203 (41%), Gaps = 34/203 (16%)
Query: 39 TLLHWAAINNRIE-IMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGAD- 96
+ L AA N ++ + K +G V G + T LH A +L++ ++L++ +
Sbjct: 5 SPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGE-TALHIAALYDNLEAAMVLMEAAPEL 63
Query: 97 ----PTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRN-------------GMT 139
T EG T +H A + +V L+A+G +V+ + G
Sbjct: 64 VFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEH 123
Query: 140 ALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITT-----LVSH 194
L ++A S + RLLI GA QD GN LH I + + L+S+
Sbjct: 124 PLSFAACV-GSEEIVRLLIEHGADIRAQDS-LGNTVLHILIL-QPNKTFACQMYNLLLSY 180
Query: 195 ------TSSLEIPNAQGLTPFML 211
S +PN QGLTPF L
Sbjct: 181 DGGDHLKSLELVPNNQGLTPFKL 203
Score = 118 bits (299), Expect = 1e-30
Identities = 33/168 (19%), Positives = 61/168 (36%), Gaps = 24/168 (14%)
Query: 28 QDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQA------------TPL 75
+ + E T LH A IN + +++ +++GA V A PL
Sbjct: 66 EPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPL 125
Query: 76 HWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVA----YLVAKGINVN 131
+A G + V LLI+HGAD DS G+T +H + L++ +
Sbjct: 126 SFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDH 185
Query: 132 ------LQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGN 173
+ + G+T + + ++ + L+ H +
Sbjct: 186 LKSLELVPNNQGLTPFKLAGVE-GNIVMFQHLMQKRKHIAAAHH-HHH 231
Score = 102 bits (256), Expect = 7e-25
Identities = 30/162 (18%), Positives = 59/162 (36%), Gaps = 21/162 (12%)
Query: 73 TPLHWATRQGHLDSVV-LLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINV- 130
+PL A ++ + ++ LL G + + G T +H AA + + L+ +
Sbjct: 5 SPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELV 64
Query: 131 ----NLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDK------------IHGNV 174
+ G TAL + +++ R L+ GAS + + +G
Sbjct: 65 FEPMTSELYEGQTALHIAVINQ-NVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEH 123
Query: 175 ALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTPFMLLEEN 215
L +A I L+ H + + ++ G T +L
Sbjct: 124 PLSFAAC-VGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQ 164
Score = 73.0 bits (180), Expect = 8e-15
Identities = 16/83 (19%), Positives = 26/83 (31%), Gaps = 9/83 (10%)
Query: 24 VEAGQDVNEPDSETVTLLHWAAINNRIEI----MKYFISQGAIVDAIGGDLQA-----TP 74
+E G D+ DS T+LH + +S +L TP
Sbjct: 141 IEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTP 200
Query: 75 LHWATRQGHLDSVVLLIQHGADP 97
A +G++ L+Q
Sbjct: 201 FKLAGVEGNIVMFQHLMQKRKHI 223
Score = 67.2 bits (165), Expect = 8e-13
Identities = 20/98 (20%), Positives = 40/98 (40%), Gaps = 10/98 (10%)
Query: 104 GSTCIHQAAQFGHTRIVA-YLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGA 162
+ + AA+ + ++ L +G V+ + G TAL +A +L+ +L+
Sbjct: 3 WESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALY-DNLEAAMVLMEAAP 61
Query: 163 -----STTIQDKIHGNVALHWAIYAKNHVAIT-TLVSH 194
T + G ALH A+ +V + L++
Sbjct: 62 ELVFEPMTSELY-EGQTALHIAVI-NQNVNLVRALLAR 97
Score = 45.7 bits (109), Expect = 1e-05
Identities = 6/48 (12%), Positives = 15/48 (31%), Gaps = 6/48 (12%)
Query: 24 VEAGQDVNEPDSETV------TLLHWAAINNRIEIMKYFISQGAIVDA 65
+ + E V T A + I + ++ + + + A
Sbjct: 178 LSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKRKHIAA 225
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat,
chromodomain, aromatic CAGE, signal recognit particle,
protein targeting; 3.18A {Arabidopsis thaliana} PDB:
1x3q_A 2hug_A
Length = 244
Score = 140 bits (356), Expect = 2e-38
Identities = 38/210 (18%), Positives = 66/210 (31%), Gaps = 19/210 (9%)
Query: 31 NEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLL 90
+ E + A V + TP A R+ ++ L
Sbjct: 9 SRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSEY----ETPWWTAARKADEQALSQL 64
Query: 91 IQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQD-RNGMTALMWSAYKVF 149
+ D +D G T + A G + V L G +++ +D R G+TAL +A V
Sbjct: 65 L-EDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYV- 122
Query: 150 SLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTP 208
+ L+ GA ++D+ G AL A + + + +
Sbjct: 123 RPEVVEALVELGADIEVEDE-RGLTALELARE-ILKTTPKGNPMQFGRRI---GLEKVIN 177
Query: 209 FMLLEENIGAPWLGKATVDKITELKDHYNT 238
+ A VD+I E +
Sbjct: 178 VLE------GQVFEYAEVDEIVEKRGKGKD 201
Score = 135 bits (343), Expect = 1e-36
Identities = 33/184 (17%), Positives = 57/184 (30%), Gaps = 27/184 (14%)
Query: 26 AGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLD 85
+DV+ D T L + A + ++ GA +D T LH A +
Sbjct: 66 EDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPE 125
Query: 86 SVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDR---------- 135
V L++ GAD + D G T + A + T + G + L+
Sbjct: 126 VVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQVFE 185
Query: 136 ------------NGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAK 183
G +K D + A +D L +A+ A+
Sbjct: 186 YAEVDEIVEKRGKGKDVEYLVRWKD-GGDCEWVKGVHVAEDVAKDY---EDGLEYAV-AE 240
Query: 184 NHVA 187
+ +
Sbjct: 241 SVIG 244
Score = 117 bits (296), Expect = 3e-30
Identities = 42/155 (27%), Positives = 63/155 (40%), Gaps = 7/155 (4%)
Query: 62 IVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVA 121
I+ + A + GH S V AD + SE T AA+ + ++
Sbjct: 6 IIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAAD---VVSEYETPWWTAARKADEQALS 62
Query: 122 YLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIY 181
L+ + +V+ D NG TAL++ A S RLL GA +D G ALH A
Sbjct: 63 QLL-EDRDVDAVDENGRTALLFVAGL-GSDKCVRLLAEAGADLDHRDMRGGLTALHMAAG 120
Query: 182 AKNHVAIT-TLVSHTSSLEIPNAQGLTPFMLLEEN 215
+ LV + +E+ + +GLT L E
Sbjct: 121 -YVRPEVVEALVELGADIEVEDERGLTALELAREI 154
Score = 82.3 bits (204), Expect = 7e-18
Identities = 13/124 (10%), Positives = 30/124 (24%), Gaps = 14/124 (11%)
Query: 24 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 83
VE G D+ D +T L A + + G + + + +
Sbjct: 131 VELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLE----KVINVLEGQVFEY 186
Query: 84 LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMW 143
+ ++ + G G + +D L +
Sbjct: 187 AEVDEIVEKRGK--------GKDVEYLVRWKDGGDCEWVKGVHVAEDVAKDYE--DGLEY 236
Query: 144 SAYK 147
+ +
Sbjct: 237 AVAE 240
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A
{Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Length = 156
Score = 137 bits (347), Expect = 4e-38
Identities = 32/158 (20%), Positives = 59/158 (37%), Gaps = 8/158 (5%)
Query: 39 TLLHWAAINNRIEIMKYFISQ-GAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADP 97
L AA ++ ++ + + DA+ T L G + L++ GA P
Sbjct: 4 DRLSGAAARGDVQEVRRLLHRELVHPDALNRF-GKTALQVMMF-GSTAIALELLKQGASP 61
Query: 98 TLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLL 157
+ D+ G++ +H AA+ G + LV G +VN+ D G + + + L
Sbjct: 62 NVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEG-HTAVVSFL 120
Query: 158 ITFGASTTIQDKIHGNVALHWAIYAKNHVAITT-LVSH 194
+ +D G L A+ + + L H
Sbjct: 121 AA-ESDLHRRDA-RGLTPLELALQ-RGAQDLVDILQGH 155
Score = 131 bits (333), Expect = 3e-36
Identities = 35/132 (26%), Positives = 60/132 (45%), Gaps = 4/132 (3%)
Query: 27 GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDS 86
+ + T L I + QGA + +P+H A R G LD+
Sbjct: 26 LVHPDALNRFGKTALQVMM-FGSTAIALELLKQGASPNVQDTSGT-SPVHDAARTGFLDT 83
Query: 87 VVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAY 146
+ +L++HGAD + D G+ IH A Q GHT +V++L +++ +D G+T L +
Sbjct: 84 LKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLA-AESDLHRRDARGLTPLELALQ 142
Query: 147 KVFSLDPTRLLI 158
+ + D +L
Sbjct: 143 R-GAQDLVDILQ 153
Score = 100 bits (252), Expect = 4e-25
Identities = 27/101 (26%), Positives = 44/101 (43%), Gaps = 2/101 (1%)
Query: 24 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 83
++ G N D+ + +H AA ++ +K + GA V+ G P+H A ++GH
Sbjct: 55 LKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGA-LPIHLAVQEGH 113
Query: 84 LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLV 124
V L +D D+ G T + A Q G +V L
Sbjct: 114 TAVVSFLAAE-SDLHRRDARGLTPLELALQRGAQDLVDILQ 153
Score = 82.8 bits (206), Expect = 6e-19
Identities = 27/110 (24%), Positives = 44/110 (40%), Gaps = 6/110 (5%)
Query: 104 GSTCIHQAAQFGHTRIVAYLV-AKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGA 162
+ AA G + V L+ + ++ + +R G TAL + S L+ GA
Sbjct: 2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFG--STAIALELLKQGA 59
Query: 163 STTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTPFML 211
S +QD G +H A + LV H + + +P+ G P L
Sbjct: 60 SPNVQDT-SGTSPVHDAAR-TGFLDTLKVLVEHGADVNVPDGTGALPIHL 107
Score = 40.5 bits (96), Expect = 4e-04
Identities = 6/34 (17%), Positives = 13/34 (38%)
Query: 26 AGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQ 59
A D++ D+ +T L A +++
Sbjct: 122 AESDLHRRDARGLTPLELALQRGAQDLVDILQGH 155
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP:
k.37.1.1
Length = 126
Score = 134 bits (341), Expect = 1e-37
Identities = 51/124 (41%), Positives = 71/124 (57%), Gaps = 2/124 (1%)
Query: 39 TLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPT 98
T LH AA N +E++K + GA V+A + TPLH A R GHL+ V LL++ GAD
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNAKDKN-GRTPLHLAARNGHLEVVKLLLEAGADVN 62
Query: 99 LMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLI 158
D G T +H AA+ GH +V L+ G +VN +D+NG T L +A L+ +LL+
Sbjct: 63 AKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNG-HLEVVKLLL 121
Query: 159 TFGA 162
GA
Sbjct: 122 EAGA 125
Score = 113 bits (287), Expect = 3e-30
Identities = 45/104 (43%), Positives = 60/104 (57%), Gaps = 1/104 (0%)
Query: 24 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 83
+EAG DVN D T LH AA N +E++K + GA V+A + + TPLH A R GH
Sbjct: 22 LEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGR-TPLHLAARNGH 80
Query: 84 LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKG 127
L+ V LL++ GAD D G T +H AA+ GH +V L+ G
Sbjct: 81 LEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 124
Score = 78.9 bits (196), Expect = 8e-18
Identities = 34/106 (32%), Positives = 53/106 (50%), Gaps = 4/106 (3%)
Query: 104 GSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGAS 163
G T +H AA+ GH +V L+ G +VN +D+NG T L +A L+ +LL+ GA
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARN-GHLEVVKLLLEAGAD 60
Query: 164 TTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTP 208
+DK +G LH A H+ + L+ + + + G TP
Sbjct: 61 VNAKDK-NGRTPLHLAAR-NGHLEVVKLLLEAGADVNAKDKNGRTP 104
Score = 47.3 bits (114), Expect = 8e-07
Identities = 17/38 (44%), Positives = 22/38 (57%)
Query: 24 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGA 61
+EAG DVN D T LH AA N +E++K + GA
Sbjct: 88 LEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 125
Score = 46.6 bits (112), Expect = 1e-06
Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 4/77 (5%)
Query: 136 NGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSH 194
NG T L +A L+ +LL+ GA +DK +G LH A H+ + L+
Sbjct: 1 NGRTPLHLAARNG-HLEVVKLLLEAGADVNAKDK-NGRTPLHLAAR-NGHLEVVKLLLEA 57
Query: 195 TSSLEIPNAQGLTPFML 211
+ + + G TP L
Sbjct: 58 GADVNAKDKNGRTPLHL 74
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping,
inhibition, prote binding, actin capping, actin-binding,
cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A
2kxp_C 2myo_A
Length = 123
Score = 131 bits (333), Expect = 1e-36
Identities = 30/112 (26%), Positives = 52/112 (46%), Gaps = 5/112 (4%)
Query: 39 TLLHWAAINNRIEIMKYFISQGAIVDA--IGGDLQATPLHWATRQGHLDSVVLLIQHGAD 96
WA N ++ +K ++++G V+ GG PLH+A G L+ + L+ GAD
Sbjct: 9 KEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGR---KPLHYAADCGQLEILEFLLLKGAD 65
Query: 97 PTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKV 148
D T + A GH V L++KG + ++ +G+TA + +
Sbjct: 66 INAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQA 117
Score = 116 bits (294), Expect = 3e-31
Identities = 30/116 (25%), Positives = 52/116 (44%), Gaps = 3/116 (2%)
Query: 73 TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 132
WA + G LD V + G D G +H AA G I+ +L+ KG ++N
Sbjct: 9 KEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINA 68
Query: 133 QDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAI 188
D++ +T L+ + Y+ + +LL++ GA T++ G A + A+
Sbjct: 69 PDKHHITPLLSAVYEG-HVSCVKLLLSKGADKTVKGP-DGLTAFEATDN-QAIKAL 121
Score = 109 bits (275), Expect = 1e-28
Identities = 29/97 (29%), Positives = 47/97 (48%), Gaps = 1/97 (1%)
Query: 24 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 83
V G+DVN LH+AA ++EI+++ + +GA ++A TPL A +GH
Sbjct: 27 VAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKH-HITPLLSAVYEGH 85
Query: 84 LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIV 120
+ V LL+ GAD T+ +G T ++
Sbjct: 86 VSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIKALL 122
Score = 86.3 bits (215), Expect = 2e-20
Identities = 31/113 (27%), Positives = 44/113 (38%), Gaps = 4/113 (3%)
Query: 100 MDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLIT 159
+ S A + G V VAKG +VN G L ++A L+ L+
Sbjct: 3 LGSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADC-GQLEILEFLLL 61
Query: 160 FGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTPFML 211
GA DK H L A+Y + HV+ L+S + + GLT F
Sbjct: 62 KGADINAPDK-HHITPLLSAVY-EGHVSCVKLLLSKGADKTVKGPDGLTAFEA 112
Score = 30.4 bits (70), Expect = 0.62
Identities = 3/31 (9%), Positives = 9/31 (29%)
Query: 24 VEAGQDVNEPDSETVTLLHWAAINNRIEIMK 54
+ G D + +T +++
Sbjct: 93 LSKGADKTVKGPDGLTAFEATDNQAIKALLQ 123
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat,
helix, extended loop, four repeat, PR ANK repeat,
disease mutation, metal-binding; 2.00A {Homo sapiens}
SCOP: k.37.1.1
Length = 137
Score = 132 bits (334), Expect = 1e-36
Identities = 39/141 (27%), Positives = 62/141 (43%), Gaps = 7/141 (4%)
Query: 27 GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDA--IGGDLQATPLHWATRQGHL 84
G D + TLLH A+I I ++Y + G+ + G TPLH A GHL
Sbjct: 1 GIDPFT-NHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGW---TPLHEACNHGHL 56
Query: 85 DSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWS 144
V LL+QH A + + +H AA+ GH IV L++ G + N + G+ + ++
Sbjct: 57 KVVELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYT 116
Query: 145 AYKVFSLDPTRLLITFGASTT 165
+ L +S+
Sbjct: 117 DDES-MKSLLLLPEKNESSSA 136
Score = 119 bits (300), Expect = 6e-32
Identities = 33/119 (27%), Positives = 59/119 (49%), Gaps = 3/119 (2%)
Query: 73 TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 132
T LH A+ +G + SV L+Q+G+DP + D G T +H+A GH ++V L+ VN
Sbjct: 12 TLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNT 71
Query: 133 QDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTL 191
+ L +A +D +LL+++GAS + G + + ++ ++ L
Sbjct: 72 TGYQNDSPLHDAAKN-GHVDIVKLLLSYGASRNAVNI-FGLRPVDYTDD-ESMKSLLLL 127
Score = 109 bits (276), Expect = 1e-28
Identities = 24/104 (23%), Positives = 45/104 (43%), Gaps = 1/104 (0%)
Query: 24 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 83
++ G D N D T LH A + +++++ + A+V+ G +PLH A + GH
Sbjct: 30 LQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQND-SPLHDAAKNGH 88
Query: 84 LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKG 127
+D V LL+ +GA ++ G + ++
Sbjct: 89 VDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNE 132
Score = 83.2 bits (207), Expect = 3e-19
Identities = 34/119 (28%), Positives = 47/119 (39%), Gaps = 5/119 (4%)
Query: 94 GADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDP 153
G DP + G T +H A+ G V YL+ G + N++D G T L + L
Sbjct: 1 GIDPF-TNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNH-GHLKV 58
Query: 154 TRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITT-LVSHTSSLEIPNAQGLTPFML 211
LL+ A + LH A HV I L+S+ +S N GL P
Sbjct: 59 VELLLQHKALVNTTGY-QNDSPLHDAAK-NGHVDIVKLLLSYGASRNAVNIFGLRPVDY 115
Score = 40.1 bits (95), Expect = 3e-04
Identities = 2/39 (5%), Positives = 11/39 (28%)
Query: 24 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAI 62
+ G N + + + + + ++ +
Sbjct: 96 LSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNESS 134
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein,
human epidermal growth factor receptor 2, de novo
protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G
2v4h_C
Length = 136
Score = 129 bits (327), Expect = 1e-35
Identities = 43/132 (32%), Positives = 66/132 (50%), Gaps = 9/132 (6%)
Query: 27 GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDS 86
G D+ + L AA + + ++ ++ GA V+A TPL+ AT GHL+
Sbjct: 11 GSDLGKK-------LLEAARAGQDDEVRILMANGADVNAKDEYGL-TPLYLATAHGHLEI 62
Query: 87 VVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAY 146
V +L+++GAD +D+ G T +H AA GH I L+ G +VN QD+ G TA S
Sbjct: 63 VEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIG 122
Query: 147 KVFSLDPTRLLI 158
+ D +L
Sbjct: 123 N-GNEDLAEILQ 133
Score = 73.6 bits (182), Expect = 6e-16
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Query: 24 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 83
++ G DVN D+ T LH AA +EI + + GA V+A + T + G+
Sbjct: 67 LKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGK-TAFDISIGNGN 125
Query: 84 LDSVVLLIQH 93
D +L +
Sbjct: 126 EDLAEILQKL 135
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein
structure initiati midwest center F or structural
genomics, MCSG; 1.77A {Leptotrichia buccalis}
Length = 186
Score = 127 bits (320), Expect = 3e-34
Identities = 27/170 (15%), Positives = 51/170 (30%), Gaps = 15/170 (8%)
Query: 39 TLLHWAAINNRIEIMKYFISQGAIVDAIGG--DLQATPLHWATRQGHLDSVVLLIQHGAD 96
+ AA+ E +G ++ L + + LI GAD
Sbjct: 8 RTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGAD 67
Query: 97 PTLMDSEGSTCIHQAAQFGHTRIVA------YLVAKGINVNLQDRNGMTALMWSAYKVFS 150
EG+T Q G I + KG ++ + + + + F
Sbjct: 68 IKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFV 127
Query: 151 LDPTR------LLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSH 194
+ + G I+DK G AL + + +A+ + +
Sbjct: 128 DENEMIPLYKLIFSQSGLQLLIKDK-WGLTALEFVKRCQKPIALKMMEDY 176
Score = 111 bits (280), Expect = 1e-28
Identities = 19/126 (15%), Positives = 38/126 (30%), Gaps = 14/126 (11%)
Query: 24 VEAGQDVNEPDSETVTLLHWAAINNR------IEIMKYFISQGAIVDAIGGDLQATPLHW 77
+ G D+ E TL E+ K F+ +GA + A+ +
Sbjct: 62 INKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKP-YKIVVFK 120
Query: 78 ATRQGHLDSV-------VLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINV 130
+D ++ Q G + D G T + + + +
Sbjct: 121 NIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKY 180
Query: 131 NLQDRN 136
NL++ +
Sbjct: 181 NLKENS 186
Score = 47.7 bits (114), Expect = 2e-06
Identities = 7/54 (12%), Positives = 18/54 (33%)
Query: 12 EFELTKVFVGKCVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDA 65
E E+ ++ ++G + D +T L + + +K +
Sbjct: 129 ENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKYNL 182
Score = 40.8 bits (96), Expect = 4e-04
Identities = 12/105 (11%), Positives = 25/105 (23%), Gaps = 32/105 (30%)
Query: 108 IHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQ 167
+ AA G L KG + + +++
Sbjct: 10 VSAAAMLGTYEDFLELFEKGYEDK--ESVLKSNILYDV---------------------- 45
Query: 168 DKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLL 212
L + L++ + ++ +G T F L
Sbjct: 46 --------LRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPL 82
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR
{Escherichia coli}
Length = 115
Score = 121 bits (306), Expect = 4e-33
Identities = 41/103 (39%), Positives = 53/103 (51%), Gaps = 1/103 (0%)
Query: 39 TLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPT 98
T LH AA N E +K +S+GA V+A D TPLH A + GH + V LL+ GAD
Sbjct: 11 TPLHNAAKNGHAEEVKKLLSKGADVNARSKD-GNTPLHLAAKNGHAEIVKLLLAKGADVN 69
Query: 99 LMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTAL 141
+G+T H A + GH IV L AKG +VN +
Sbjct: 70 ARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHH 112
Score = 110 bits (277), Expect = 6e-29
Identities = 34/105 (32%), Positives = 51/105 (48%), Gaps = 2/105 (1%)
Query: 73 TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 132
TPLH A + GH + V L+ GAD +G+T +H AA+ GH IV L+AKG +VN
Sbjct: 11 TPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNA 70
Query: 133 QDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALH 177
+ ++G T + + +LL GA + + H
Sbjct: 71 RSKDGNTPEHLAKKNG-HHEIVKLLDAKGADVNARSW-GSSHHHH 113
Score = 92.8 bits (232), Expect = 6e-23
Identities = 32/87 (36%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Query: 24 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 83
+ G DVN + T LH AA N EI+K +++GA V+A D TP H A + GH
Sbjct: 29 LSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGN-TPEHLAKKNGH 87
Query: 84 LDSVVLLIQHGADPTLMDSEGSTCIHQ 110
+ V LL GAD S H
Sbjct: 88 HEIVKLLDAKGADVNARSWGSSHHHHH 114
Score = 83.2 bits (207), Expect = 2e-19
Identities = 30/116 (25%), Positives = 49/116 (42%), Gaps = 6/116 (5%)
Query: 94 GADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDP 153
G +G+T +H AA+ GH V L++KG +VN + ++G T L +A +
Sbjct: 1 GHM--WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKN-GHAEI 57
Query: 154 TRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTP 208
+LL+ GA + K GN H A H I L + + + +
Sbjct: 58 VKLLLAKGADVNARSK-DGNTPEHLAKK-NGHHEIVKLLDAKGADVNARSWGSSHH 111
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1,
ankyrin repeat domain, transport protein; HET: ATP;
2.70A {Rattus norvegicus} PDB: 2nyj_A*
Length = 273
Score = 121 bits (305), Expect = 3e-31
Identities = 35/196 (17%), Positives = 57/196 (29%), Gaps = 50/196 (25%)
Query: 26 AGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDA--IGGDLQA----------- 72
+ + T LH A + ++ + GA V A G +
Sbjct: 90 VNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGE 149
Query: 73 TPLHWATRQGHLDSVVLLIQHG---ADPTLMDSEGSTCIHQAAQFGHTRI---------- 119
PL A L V L+Q+ AD + DS G+T +H + +
Sbjct: 150 LPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMY 209
Query: 120 ------VAYLVAKGINVNLQDRNGMTALMWSAYK----VFSLDPTRLLITFGASTTIQDK 169
A L + +R G+T L +A V ++
Sbjct: 210 NEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVL-----AYILQREI------- 257
Query: 170 IHGNVALHWAIYAKNH 185
H H A + +H
Sbjct: 258 -HEPECRHAAAH-HHH 271
Score = 120 bits (303), Expect = 7e-31
Identities = 43/240 (17%), Positives = 66/240 (27%), Gaps = 56/240 (23%)
Query: 26 AGQDVNEPDSETVTLLHWAAINNRIEIMK-------YFISQGAIVDAIGGDLQATPLHWA 78
P + A + + ++ + + + T L A
Sbjct: 2 VSAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKA 61
Query: 79 T---RQGHLDSVVLLIQHGAD-----------PTLMDSEGSTCIHQAAQFGHTRIVAYLV 124
G D++ LL+ T +G T +H A + + +V LV
Sbjct: 62 MLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLV 121
Query: 125 AKGINVNLQDRN--------------GMTALMWSAYKVFSLDPTRLLITFG---ASTTIQ 167
G +V G L +A L + L+ A + +
Sbjct: 122 ENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTN-QLAIVKFLLQNSWQPADISAR 180
Query: 168 DKIHGNVALHWA-IYAKNHVAITTLV---------------SHTSSLEIPNAQGLTPFML 211
D GN LH A N V T V EI N +GLTP L
Sbjct: 181 DS-VGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLAL 239
Score = 57.5 bits (139), Expect = 3e-09
Identities = 9/61 (14%), Positives = 19/61 (31%), Gaps = 8/61 (13%)
Query: 25 EAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHL 84
+ + + +T L AA + +I ++ Y + + H A H
Sbjct: 221 PTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIHEP--------ECRHAAAHHHHH 272
Query: 85 D 85
Sbjct: 273 H 273
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo
protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Length = 110
Score = 114 bits (287), Expect = 2e-30
Identities = 31/104 (29%), Positives = 48/104 (46%), Gaps = 4/104 (3%)
Query: 44 AAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSE 103
+ ++ + +G+ + + G L A R G D V +L+ +GAD D
Sbjct: 1 GSSHHHHHHSSGLVPRGSHMGSDLG----KKLLEAARAGQDDEVRILMANGADVAAKDKN 56
Query: 104 GSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYK 147
GST +H AA+ GH +V L+ G +V QD+ G TA S
Sbjct: 57 GSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDN 100
Score = 101 bits (253), Expect = 7e-26
Identities = 29/100 (29%), Positives = 43/100 (43%), Gaps = 4/100 (4%)
Query: 24 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 83
V G + L AA + + ++ ++ GA V A + TPLH A R GH
Sbjct: 14 VPRGSHMGSDLG---KKLLEAARAGQDDEVRILMANGADVAAKDKNGS-TPLHLAARNGH 69
Query: 84 LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYL 123
L+ V LL++ GAD D G T + G+ + L
Sbjct: 70 LEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109
>2etb_A Transient receptor potential cation channel subfamily V member 2;
TRPV2, ankyrin repeat domain, transport protein; 1.65A
{Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Length = 256
Score = 118 bits (298), Expect = 2e-30
Identities = 42/215 (19%), Positives = 59/215 (27%), Gaps = 50/215 (23%)
Query: 27 GQDVNEPDSETVTLLHWAAIN---NRIEIMKYFISQGAIVDAIGGDLQA----------T 73
S T L A +N + + + A +
Sbjct: 33 TDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHS 92
Query: 74 PLHWATRQGHLDSVVLLIQHGAD-------------PTLMDSEGSTCIHQAAQFGHTRIV 120
LH A + L V LL+++GAD G + AA +V
Sbjct: 93 ALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVV 152
Query: 121 AYLVAKGI---NVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALH 177
YL+ ++ D G T L I D N AL
Sbjct: 153 TYLLENPHQPASLEATDSLGNTVLHALV-------------------MIADNSPENSALV 193
Query: 178 WAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTPFML 211
+Y + + L EI N QGLTP L
Sbjct: 194 IHMY-DGLLQMGARLCPTVQLEEISNHQGLTPLKL 227
Score = 111 bits (280), Expect = 7e-28
Identities = 29/172 (16%), Positives = 51/172 (29%), Gaps = 40/172 (23%)
Query: 27 GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQA------------TP 74
+ + + LH A ++ +K + GA V P
Sbjct: 80 NAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELP 139
Query: 75 LHWATRQGHLDSVVLLIQHG---ADPTLMDSEGSTCIHQ----------------AAQFG 115
L A D V L+++ A DS G+T +H G
Sbjct: 140 LSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDG 199
Query: 116 HTRIVAYLVAKGINVNLQDRNGMTALMWSAYK----VFSLDPTRLLITFGAS 163
++ A L + + G+T L +A + +F R ++ S
Sbjct: 200 LLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIF-----RHILQREFS 246
Score = 94.1 bits (234), Expect = 9e-22
Identities = 20/140 (14%), Positives = 39/140 (27%), Gaps = 33/140 (23%)
Query: 24 VEAGQDVNEPDSETVTL-------------LHWAAINNRIEIMKYFISQG---------- 60
VE G DV+ L AA + +++ Y +
Sbjct: 110 VENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATD 169
Query: 61 ---------AIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQA 111
++ A + L G L L + + +G T + A
Sbjct: 170 SLGNTVLHALVMIADNSPEN-SALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLA 228
Query: 112 AQFGHTRIVAYLVAKGINVN 131
A+ G I +++ + +
Sbjct: 229 AKEGKIEIFRHILQREFSGA 248
Score = 64.8 bits (158), Expect = 7e-12
Identities = 29/174 (16%), Positives = 50/174 (28%), Gaps = 40/174 (22%)
Query: 73 TPLHWATRQGHLDSVVLLIQH--------GADPTLMDSEGSTCIHQAA---QFGHTRIVA 121
L +G + + L+++ S G TC+ +A Q G +
Sbjct: 4 DRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIM 63
Query: 122 YLVAKG-----------INVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDK- 169
L+ + G +AL + K SL +LL+ GA ++
Sbjct: 64 PLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEK-RSLQCVKLLVENGADVHLRACG 122
Query: 170 -----------IHGNVALHWAIYAKNHVAITT-LVSHTSSLEIPNAQ---GLTP 208
G + L A + T L+ + A G T
Sbjct: 123 RFFQKHQGTCFYFGELPLSLAAC-TKQWDVVTYLLENPHQPASLEATDSLGNTV 175
Score = 44.4 bits (105), Expect = 4e-05
Identities = 9/43 (20%), Positives = 17/43 (39%)
Query: 24 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAI 66
Q + + +T L AA +IEI ++ + + A
Sbjct: 208 CPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREFSGAAA 250
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP:
k.37.1.1
Length = 93
Score = 106 bits (268), Expect = 5e-28
Identities = 38/89 (42%), Positives = 52/89 (58%), Gaps = 1/89 (1%)
Query: 39 TLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPT 98
T LH AA N +E++K + GA V+A + + TPLH A R GHL+ V LL++ GAD
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGR-TPLHLAARNGHLEVVKLLLEAGADVN 62
Query: 99 LMDSEGSTCIHQAAQFGHTRIVAYLVAKG 127
D G T +H AA+ GH +V L+ G
Sbjct: 63 AKDKNGRTPLHLAARNGHLEVVKLLLEAG 91
Score = 101 bits (255), Expect = 3e-26
Identities = 39/90 (43%), Positives = 53/90 (58%), Gaps = 1/90 (1%)
Query: 73 TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 132
TPLH A R GHL+ V LL++ GAD D G T +H AA+ GH +V L+ G +VN
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA 63
Query: 133 QDRNGMTALMWSAYKVFSLDPTRLLITFGA 162
+D+NG T L +A L+ +LL+ GA
Sbjct: 64 KDKNGRTPLHLAARNG-HLEVVKLLLEAGA 92
Score = 83.2 bits (207), Expect = 9e-20
Identities = 33/72 (45%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Query: 24 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 83
+EAG DVN D T LH AA N +E++K + GA V+A + + TPLH A R GH
Sbjct: 22 LEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGR-TPLHLAARNGH 80
Query: 84 LDSVVLLIQHGA 95
L+ V LL++ GA
Sbjct: 81 LEVVKLLLEAGA 92
Score = 75.5 bits (187), Expect = 5e-17
Identities = 31/92 (33%), Positives = 47/92 (51%), Gaps = 4/92 (4%)
Query: 104 GSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGAS 163
G T +H AA+ GH +V L+ G +VN +D+NG T L +A L+ +LL+ GA
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARN-GHLEVVKLLLEAGAD 60
Query: 164 TTIQDKIHGNVALHWAIYAKNHVAIT-TLVSH 194
+DK +G LH A H+ + L+
Sbjct: 61 VNAKDK-NGRTPLHLAAR-NGHLEVVKLLLEA 90
Score = 46.2 bits (111), Expect = 9e-07
Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 4/77 (5%)
Query: 136 NGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSH 194
NG T L +A L+ +LL+ GA +DK +G LH A H+ + L+
Sbjct: 1 NGRTPLHLAARN-GHLEVVKLLLEAGADVNAKDK-NGRTPLHLAAR-NGHLEVVKLLLEA 57
Query: 195 TSSLEIPNAQGLTPFML 211
+ + + G TP L
Sbjct: 58 GADVNAKDKNGRTPLHL 74
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats,
cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP:
d.211.1.1
Length = 327
Score = 112 bits (282), Expect = 1e-27
Identities = 37/206 (17%), Positives = 62/206 (30%), Gaps = 28/206 (13%)
Query: 26 AGQDVNEP-DSETVTLLHWAAINNRIEIMKYFISQGA---IVDAIGGDLQATPLHWATRQ 81
++N P D T LHW +E++K+ + G+ D +G + L A +
Sbjct: 119 TQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMG----ESCLVKAVKS 174
Query: 82 GHLDSV----VLLIQHGADPTLMDSEGSTCIHQAAQFGHTR------------IVAYLVA 125
+ LL L DS T +H ++ ++V
Sbjct: 175 VNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVK 234
Query: 126 KGINVNLQDRNGMTALMWSAYKVFSLDPTRLL---ITFGASTTIQDKIHGNVALHWAIYA 182
K N + L QD +G+ L+ A
Sbjct: 235 KQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDS-NGDTCLNIAARL 293
Query: 183 KNHVAITTLVSHTSSLEIPNAQGLTP 208
N + L+ + + I N GL P
Sbjct: 294 GNISIVDALLDYGADPFIANKSGLRP 319
Score = 112 bits (280), Expect = 2e-27
Identities = 29/204 (14%), Positives = 64/204 (31%), Gaps = 19/204 (9%)
Query: 27 GQDVNEPDSETVTLLHWAAINNRI-EIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLD 85
+ N + + ++ + E+ F + ++ + TPLHW T +L+
Sbjct: 86 SSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLE 145
Query: 86 SVVLLIQHGADPTLMDSEGSTCIHQAAQFGH---TRIVAYLVAKGI-NVNLQDRNGMTAL 141
V L++HG++ D+ G +C+ +A + + + L+ + L+D T L
Sbjct: 146 LVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTIL 205
Query: 142 MWSAYKVFSLDPTR-----------LLITFGASTTIQDKIHGNVALHWAIYAKNHVAITT 190
+ ++ + + +
Sbjct: 206 HHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILEN 265
Query: 191 LVSHTSSLEIPNAQ---GLTPFML 211
L + NAQ G T +
Sbjct: 266 LDLKWIIANMLNAQDSNGDTCLNI 289
Score = 101 bits (252), Expect = 1e-23
Identities = 34/225 (15%), Positives = 61/225 (27%), Gaps = 9/225 (4%)
Query: 27 GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDS 86
+ NE + L E+ + + ++ GG H + +
Sbjct: 53 VVNDNEQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEV 112
Query: 87 VVLLIQHGADP-TLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSA 145
+ +D G+T +H + +V +LV G N D G + L+ +
Sbjct: 113 NDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAV 172
Query: 146 YKVFSLDP---TRLLITFGASTTIQDKIHGNVALHWAIYAKN----HVAITTLVSHTSSL 198
V + D LL ++D LH I A +
Sbjct: 173 KSVNNYDSGTFEALLDYLYPCLILEDS-MNRTILHHIIITSGMTGCSAAAKYYLDILMGW 231
Query: 199 EIPNAQGLTPFMLLEENIGAPWLGKATVDKITELKDHYNTQQNII 243
+ E+ D I E D N++
Sbjct: 232 IVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANML 276
Score = 92.0 bits (228), Expect = 1e-20
Identities = 27/180 (15%), Positives = 56/180 (31%), Gaps = 29/180 (16%)
Query: 24 VEAGQDVNEPDSETVTLLHWAAINNRI-------EIMKYFISQGAIVDAIGGDLQATPLH 76
V+ G + D+ + L A + ++ Y + D++ T LH
Sbjct: 151 VKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMN----RTILH 206
Query: 77 WATR-----------QGHLDSVV-LLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLV 124
+ +LD ++ +++ P + + +
Sbjct: 207 HIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENL 266
Query: 125 AKGI----NVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAI 180
+N QD NG T L +A ++ L+ +GA I +K G + +
Sbjct: 267 DLKWIIANMLNAQDSNGDTCLNIAARL-GNISIVDALLDYGADPFIANK-SGLRPVDFGA 324
Score = 69.3 bits (169), Expect = 5e-13
Identities = 20/105 (19%), Positives = 38/105 (36%), Gaps = 9/105 (8%)
Query: 15 LTKVFVGKCVEAGQDVNEPDSETVTLLHWAAINNR----IEIMKYFISQGAIVDA--IGG 68
+ +G V+ + + R +E + +++A G
Sbjct: 224 YLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNG 283
Query: 69 DLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQ 113
D T L+ A R G++ V L+ +GADP + + G + A
Sbjct: 284 D---TCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGAG 325
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin
repeats, ANK repeat, ION transport, ionic channel, R
transmembrane, transport; 2.30A {Gallus gallus} PDB:
3jxj_A
Length = 260
Score = 108 bits (271), Expect = 9e-27
Identities = 40/227 (17%), Positives = 66/227 (29%), Gaps = 56/227 (24%)
Query: 39 TLLHWAAINNRIE----IMKYFISQGAIV---DAIGGDLQATPLHWA---TRQGHLDSVV 88
+L + ++ + ++ + + T L A G D++
Sbjct: 7 PILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIP 66
Query: 89 LLIQHGADPTLM-----------DSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRN- 136
+L+ M G T +H A + V LV KG +V+ Q R
Sbjct: 67 ILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGR 126
Query: 137 -------------GMTALMWSAYKVFSLDPTRLLITFG---ASTTIQDKIHGNVALHWAI 180
G L +A L G A QD GN LH +
Sbjct: 127 FFQPKDEGGYFYFGELPLSLAACT-NQPHIVHYLTENGHKQADLRRQDS-RGNTVLHALV 184
Query: 181 YAKNHVAITT---------LVSH-------TSSLEIPNAQGLTPFML 211
++ T L+ T+ + N GL+P M+
Sbjct: 185 AIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMM 231
Score = 102 bits (257), Expect = 8e-25
Identities = 32/167 (19%), Positives = 54/167 (32%), Gaps = 33/167 (19%)
Query: 29 DVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDA--IGGDLQA-----------TPL 75
+ T LH A ++ + +GA V A G Q PL
Sbjct: 85 PFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPL 144
Query: 76 HWATRQGHLDSVVLLIQHG---ADPTLMDSEGSTCIHQAAQFGH---------TRIVAYL 123
A V L ++G AD DS G+T +H T++ L
Sbjct: 145 SLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLL 204
Query: 124 VAKGINVN-------LQDRNGMTALMWSAYKVFSLDPTRLLITFGAS 163
+ K + L + +G++ LM +A + + +I +
Sbjct: 205 LIKCAKLFPDTNLEALLNNDGLSPLMMAAKT-GKIGIFQHIIRREIA 250
Score = 79.4 bits (196), Expect = 9e-17
Identities = 26/141 (18%), Positives = 42/141 (29%), Gaps = 34/141 (24%)
Query: 24 VEAGQDVNEPDSETV--------------TLLHWAAINNRIEIMKYFISQG---AIVDAI 66
VE G DV+ L AA N+ I+ Y G A +
Sbjct: 113 VEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQ 172
Query: 67 GGDLQATPLHWATRQGH---------LDSVVLLIQHGAD-------PTLMDSEGSTCIHQ 110
T LH LL+ A L++++G + +
Sbjct: 173 DSRGN-TVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMM 231
Query: 111 AAQFGHTRIVAYLVAKGINVN 131
AA+ G I +++ + I
Sbjct: 232 AAKTGKIGIFQHIIRREIADA 252
Score = 42.1 bits (99), Expect = 2e-04
Identities = 7/49 (14%), Positives = 15/49 (30%), Gaps = 7/49 (14%)
Query: 24 VEAGQDVNEPDSETV-------TLLHWAAINNRIEIMKYFISQGAIVDA 65
+ + + + L AA +I I ++ I + A
Sbjct: 205 LIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIADAA 253
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics,
PSI, protein structure initiative; 2.80A {Legionella
pneumophila} SCOP: a.118.24.1
Length = 376
Score = 103 bits (257), Expect = 5e-24
Identities = 26/217 (11%), Positives = 52/217 (23%), Gaps = 27/217 (12%)
Query: 20 VGKCVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQA---TPLH 76
+ + + + V +E AA N + ++ +QA
Sbjct: 111 LCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIM--AMIQAENYHAFR 168
Query: 77 WATRQGHLDSVVLLIQHGADPTLMD--SEGSTCIHQAA-QFGHTRIVAYLVAKGINVNLQ 133
A GHL + L + +E AA GH ++ +L+ + +
Sbjct: 169 LAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYA 228
Query: 134 DRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIH-----------GNVALHWAIYA 182
+ + + RL A G L I
Sbjct: 229 EIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRR 288
Query: 183 KNHVAITTL--------VSHTSSLEIPNAQGLTPFML 211
+ V + + + + L
Sbjct: 289 NDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRL 325
Score = 93.5 bits (232), Expect = 9e-21
Identities = 25/177 (14%), Positives = 44/177 (24%), Gaps = 14/177 (7%)
Query: 34 DSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQH 93
+ E V L + K S + LD++ LL+
Sbjct: 59 NMEQVRQLLCLYYAHYNRNAKQLWSDAHKKGIKSEVICFVAAITG-CSSALDTLCLLLTS 117
Query: 94 GADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQD--RNGMTALMWSAYK---- 147
++ +E AA+ GH ++ L + A +A
Sbjct: 118 DEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLH 177
Query: 148 VFSLDPTRLLITFGASTTIQD-KIHGNVALHWAIYAKNHVAITT-LVSHTSSLEIPN 202
V L + + A WA + H + L+ L
Sbjct: 178 V-----LNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAE 229
Score = 90.4 bits (224), Expect = 1e-19
Identities = 28/214 (13%), Positives = 51/214 (23%), Gaps = 39/214 (18%)
Query: 24 VEAGQDVNEPDSET--VTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQ-ATPLHW-AT 79
E + AA N + ++ + W A
Sbjct: 148 CELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAV 207
Query: 80 RQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVN-------- 131
+GH + + L+ + ++G + ++ +
Sbjct: 208 GRGHHNVINFLLDCPVMLAYAE-------IHEFEYGEKYVNPFIARHVNRLKEMHDAFKL 260
Query: 132 ------------LQDRNGMTALMWSAYK--VFSLDPTRLLITF-----GASTTIQDKIHG 172
+ G L + LD R L++ A T
Sbjct: 261 SNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPG-DA 319
Query: 173 NVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGL 206
N L A+ N A L+S S L + A
Sbjct: 320 NELLRLALRLGNQGACALLLSIPSVLALTKANNY 353
Score = 63.8 bits (155), Expect = 5e-11
Identities = 10/72 (13%), Positives = 22/72 (30%), Gaps = 4/72 (5%)
Query: 24 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 83
++A + LL A +S +++ +A + G
Sbjct: 306 IKALAPTATIPGDANELLRLALRLGNQGACALLLSIPSVLALT----KANNYYINETGGR 361
Query: 84 LDSVVLLIQHGA 95
LD + ++H
Sbjct: 362 LDLRAVALEHHH 373
Score = 39.5 bits (92), Expect = 0.003
Identities = 13/114 (11%), Positives = 34/114 (29%), Gaps = 9/114 (7%)
Query: 99 LMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLI 158
L S + + + N ++ + L ++ Y + L
Sbjct: 29 LFQHFISANELSLMTLSYKEAIHIFLPGTKN--MEQVRQLLCLYYAHYNRN----AKQLW 82
Query: 159 TFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTPFML 211
+ I+ ++ VA + + L++ +++ A+ F L
Sbjct: 83 SDAHKKGIKSEVICFVAAITG--CSSALDTLCLLLTSDEIVKVIQAENYQAFRL 134
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing
protein 1; arfgap domain, zinc-binding module, GTPase
activ metal-binding, nitration; 2.30A {Homo sapiens}
Length = 368
Score = 78.3 bits (192), Expect = 8e-16
Identities = 28/103 (27%), Positives = 45/103 (43%), Gaps = 1/103 (0%)
Query: 40 LLHWAAINNRIEIMKYFISQGAIVDAIGGDLQA-TPLHWATRQGHLDSVVLLIQHGADPT 98
L + + M ++ GA V+ + G TPL AT L + L+Q+GA+
Sbjct: 203 LFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVN 262
Query: 99 LMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTAL 141
DS G +H A GHT + + +G ++ +D G L
Sbjct: 263 QADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPL 305
Score = 67.5 bits (164), Expect = 3e-12
Identities = 35/131 (26%), Positives = 49/131 (37%), Gaps = 4/131 (3%)
Query: 27 GQDVNEPDSETV--TLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHL 84
G DVN + T L A N + ++ + GA V+ PLH AT GH
Sbjct: 223 GADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSA-GRGPLHHATILGHT 281
Query: 85 DSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLV-AKGINVNLQDRNGMTALMW 143
L ++ GAD DSEG + A + + IV L AK
Sbjct: 282 GLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYL 341
Query: 144 SAYKVFSLDPT 154
++ FSL +
Sbjct: 342 DIFRDFSLMAS 352
Score = 51.3 bits (122), Expect = 4e-07
Identities = 23/149 (15%), Positives = 41/149 (27%), Gaps = 37/149 (24%)
Query: 69 DLQATPLHWATRQGHLDSVVLLIQHGADPTLMDS--EGSTCIHQAAQFGHTRIVAYLVAK 126
A + L ++ + HGAD ++ + +T + QA +L+
Sbjct: 198 HPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQN 257
Query: 127 GINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHV 186
G NVN D G L H A +
Sbjct: 258 GANVNQADSAGRGPL-----------------------------------HHATILGHTG 282
Query: 187 AITTLVSHTSSLEIPNAQGLTPFMLLEEN 215
+ + L +++G P + E
Sbjct: 283 LACLFLKRGADLGARDSEGRDPLTIAMET 311
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium,
SGC, metal binding protein; 2.06A {Homo sapiens}
Length = 301
Score = 71.6 bits (175), Expect = 8e-14
Identities = 24/109 (22%), Positives = 42/109 (38%), Gaps = 9/109 (8%)
Query: 42 HWAAINNR-IEIMKYFISQGA-----IVDAIGGDLQATPLHWATRQGHLDSVV---LLIQ 92
W AI NR + + + G + + LH A + + S+ +IQ
Sbjct: 155 LWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQ 214
Query: 93 HGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTAL 141
+G ++G+T +H AA + + L+ V + G TAL
Sbjct: 215 NGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETAL 263
Score = 64.2 bits (156), Expect = 2e-11
Identities = 26/111 (23%), Positives = 42/111 (37%), Gaps = 10/111 (9%)
Query: 22 KCVEAGQDVNEPDSETV------TLLHWA---AINNRIEIMKYFISQGAIVDAIGGDLQA 72
+ GQD +P +LH A A + ++ + I G +DA D
Sbjct: 169 EAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGN- 227
Query: 73 TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYL 123
T LH+A D + LL++ A ++ G T + A + H L
Sbjct: 228 TALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELL 278
Score = 53.5 bits (128), Expect = 7e-08
Identities = 19/83 (22%), Positives = 37/83 (44%), Gaps = 7/83 (8%)
Query: 27 GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDS 86
G ++ ++ T LH+AA+ N+ + +K + A+V + + T L A ++ H +
Sbjct: 216 GGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGE-TALDIARKKHHKEC 274
Query: 87 VVLLIQHGADPTLMDSEGSTCIH 109
LL Q A + +H
Sbjct: 275 EELLEQAQAG------TFAFPLH 291
Score = 48.1 bits (114), Expect = 4e-06
Identities = 20/147 (13%), Positives = 42/147 (28%), Gaps = 44/147 (29%)
Query: 78 ATRQGHLDSVVLLIQHGADPTL------MDSEGSTCIHQAAQFGHTR---IVAYLVAKGI 128
A L SV+ +G D + +H A + + +V +++ G
Sbjct: 158 AICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGG 217
Query: 129 NVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAI 188
+++ + +G TAL H+A +
Sbjct: 218 HLDAKAADGNTAL-----------------------------------HYAALYNQPDCL 242
Query: 189 TTLVSHTSSLEIPNAQGLTPFMLLEEN 215
L+ + + N G T + +
Sbjct: 243 KLLLKGRALVGTVNEAGETALDIARKK 269
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats,
metal binding protein; 2.10A {Mus musculus} SCOP:
d.211.1.1 g.45.1.1
Length = 278
Score = 66.9 bits (163), Expect = 2e-12
Identities = 21/111 (18%), Positives = 37/111 (33%), Gaps = 7/111 (6%)
Query: 73 TPLHWATRQG---HLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGIN 129
T LH A R L V L+Q+ + +GST +H + + L+ +
Sbjct: 171 TALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKAS 230
Query: 130 VNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAI 180
+ + + +G T L + L H +V W +
Sbjct: 231 IEIANESGETPLDIAKRLKHEHCEELLTQALSGRFN----SHVHVEYEWRL 277
Score = 52.7 bits (126), Expect = 1e-07
Identities = 15/66 (22%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
Query: 27 GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDS 86
++++ + T LH+ + + E +K + A ++ + TPL A R H
Sbjct: 195 SGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGE-TPLDIAKRLKHEHC 253
Query: 87 VVLLIQ 92
LL Q
Sbjct: 254 EELLTQ 259
Score = 44.2 bits (104), Expect = 6e-05
Identities = 27/149 (18%), Positives = 43/149 (28%), Gaps = 44/149 (29%)
Query: 76 HWATRQGHLDSVVLLIQHGADPTLM------DSEGSTCIHQAAQFG---HTRIVAYLVAK 126
A + + ++ G D T T +H A + IV +LV
Sbjct: 135 CEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQN 194
Query: 127 GINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHV 186
N++ Q G TAL H+ N
Sbjct: 195 SGNLDKQTGKGSTAL-----------------------------------HYCCLTDNAE 219
Query: 187 AITTLVSHTSSLEIPNAQGLTPFMLLEEN 215
+ L+ +S+EI N G TP + +
Sbjct: 220 CLKLLLRGKASIEIANESGETPLDIAKRL 248
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing
protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1,
linkers, alternat splicing; HET: GDP; 3.38A {Homo
sapiens} PDB: 3lvr_E*
Length = 497
Score = 61.5 bits (149), Expect = 4e-10
Identities = 30/157 (19%), Positives = 54/157 (34%), Gaps = 29/157 (18%)
Query: 2 EHWRGVK-NW----YEFELTKVFVGKCVEAGQDVNEPDSETVTLLHWAAINNR-IEIMKY 55
E G + ++ Y F +C Q + W AI NR + +
Sbjct: 106 ESDMGTRRDYIMAKYV---EHRFARRCTPEPQRL------------WTAICNRDLLSVLE 150
Query: 56 FISQGA-----IVDAIGGDLQATPLHWATRQGHLDSVV---LLIQHGADPTLMDSEGSTC 107
+ G + + LH A + + S+ +IQ+G ++G+T
Sbjct: 151 AFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTA 210
Query: 108 IHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWS 144
+H AA + + L+ V + G TAL +
Sbjct: 211 LHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIA 247
Score = 49.9 bits (119), Expect = 2e-06
Identities = 27/112 (24%), Positives = 39/112 (34%), Gaps = 22/112 (19%)
Query: 27 GQDVNEPDSETV------TLLHWAAINNRIEIMKYFISQGAIVDAI---GGDLQA----- 72
GQD +P +LH A + +VD I GG L A
Sbjct: 155 GQDFGQPLPGPDAQAPEELVLHLAVKVANQASL-------PLVDFIIQNGGHLDAKAADG 207
Query: 73 -TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYL 123
T LH+A D + LL++ A ++ G T + A + H L
Sbjct: 208 NTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELL 259
Score = 42.2 bits (99), Expect = 4e-04
Identities = 23/147 (15%), Positives = 38/147 (25%), Gaps = 38/147 (25%)
Query: 75 LHWATRQGHLDSVVLLIQHGADPTLM------DSEGSTCIHQAAQFGHTRIVAYLVAKGI 128
L A L SV+ +G D + +H A + +
Sbjct: 136 LWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQA---------- 185
Query: 129 NVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAI 188
SL +I G + GN ALH+A +
Sbjct: 186 ---------------------SLPLVDFIIQNGGHLDAKAA-DGNTALHYAALYNQPDCL 223
Query: 189 TTLVSHTSSLEIPNAQGLTPFMLLEEN 215
L+ + + N G T + +
Sbjct: 224 KLLLKGRALVGTVNEAGETALDIARKK 250
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 46.2 bits (109), Expect = 3e-05
Identities = 87/502 (17%), Positives = 142/502 (28%), Gaps = 176/502 (35%)
Query: 39 TLLHWAAINNRIEIMK-YFI-SQGAIVDAIGGDLQ-ATPLHWATR-------------QG 82
T + A ++ F + D + TP + G
Sbjct: 24 TASFFIA-----SQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVG 78
Query: 83 HLDSVV-LLIQHGADPTLMDSEGSTCIHQ-AAQFGHTR----------IVAYLVAKGINV 130
D V+ L + + L ++ IH AA+ I Y+ A+ +
Sbjct: 79 QFDQVLNLCLTEFENCYLEGND----IHALAAKLLQENDTTLVKTKELIKNYITARIMAK 134
Query: 131 NLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHW----AIYAKNHV 186
D+ +AL + + +L+ FG Q GN ++ +Y HV
Sbjct: 135 RPFDKKSNSALFRAVGE----GNAQLVAIFGG----Q----GNTDDYFEELRDLYQTYHV 182
Query: 187 AITTLVSHTSSLEIPNAQGLTPFMLLEENIGAPWLGKATVDKITELKDHYNTQQNIIHRF 246
+ L+ ++ L E L + T+D + + NI+
Sbjct: 183 LVGDLIKFSAET-------------LSE------LIRTTLDA----EKVFTQGLNILEWL 219
Query: 247 SKSKTTRARYMFALPFVMFGLIGFIFQ-AQIAYMAKLA------LFISLY---------I 290
T + + LIG + Q A AKL L L +
Sbjct: 220 ENPSNTPDKDYLLSIPISCPLIG-VIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLV 278
Query: 291 VMQVIGTVMFDERLFKILPLPVYFATKFWIYITWLFWI-------TPVVNFFVSLLFFST 343
I E F K IT LF+I P + S+L S
Sbjct: 279 TAVAIAETDSWESFFVS-------VRK---AITVLFFIGVRCYEAYPNTSLPPSILEDSL 328
Query: 344 SGVLWYNFIKCWKGDPGVITAPQDEKFRYIIELAERGTFEPLSFCSTCLVRKPIRSKHCS 403
+G P +P L+ L ++ ++
Sbjct: 329 ENN---------EGVP----SPM---------LSISN-----------LTQEQVQDY--- 352
Query: 404 ICNRCVAKFDHHCP-----WVGNCIGAKNHKYFV--GYISSLLFMCCFVLYGIAKYW-KS 455
V K + H P + GAKN V G S LYG+ K+
Sbjct: 353 -----VNKTNSHLPAGKQVEISLVNGAKN---LVVSGPPQS--------LYGLNLTLRKA 396
Query: 456 KC-----QFQLSH-EREVMFVV 471
K Q ++ ER++ F
Sbjct: 397 KAPSGLDQSRIPFSERKLKFSN 418
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 41.0 bits (95), Expect = 0.001
Identities = 67/469 (14%), Positives = 129/469 (27%), Gaps = 148/469 (31%)
Query: 21 GKCVEAGQDVNEPDSETVTLL----HWAAINNR------IEIMKYFISQGAIVDAIGGDL 70
GK A + + W + N +E+++ + Q D
Sbjct: 162 GKTWVALDVCL--SYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDH 219
Query: 71 QATP---LHWA--------TRQGH------LDSV--------------VLLIQHGADPTL 99
+ +H + + L +V +LL +
Sbjct: 220 SSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTT--RFKQV 277
Query: 100 MDSEGS------TCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDP 153
D + + H + + + L+ K ++ QD L +P
Sbjct: 278 TDFLSAATTTHISLDHHSMTLTPDEVKS-LLLKYLDCRPQD------LPREVLTT---NP 327
Query: 154 TRLLIT-FGASTTIQDKIHGNVALHWAIYAK-NHVAITTLVSHTSSLEIPNAQGLTP--- 208
++ S I+D + W + N +TT++ SSL + L P
Sbjct: 328 --RRLSIIAES--IRDGLA-----TWDNWKHVNCDKLTTIIE--SSLNV-----LEPAEY 371
Query: 209 ------FMLLEENIGAP-------WLGKATVDKITELKDHYNTQQNIIHRFSKSKTTRAR 255
+ + P W D + + +H++S +
Sbjct: 372 RKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNK--------LHKYSLVEKQPKE 423
Query: 256 YMFALPFVMFGLIGFIFQAQIAYMAKL-ALFISLYIVMQVIGTVMFDERLFKILPLPVYF 314
++P I + ++ L + Y + + FD L YF
Sbjct: 424 STISIP-----SIYLELKVKLENEYALHRSIVDHYNIPKT-----FDSDDLIPPYLDQYF 473
Query: 315 ATKFWIYITW-LFWITPV--VNFFVSLLFFSTSGVLWYNFIK--------CWKGDPGVIT 363
+ +I L I + F ++F + F++ W ++
Sbjct: 474 ---YS-HIGHHLKNIEHPERMTLF-RMVFLD------FRFLEQKIRHDSTAWNASGSILN 522
Query: 364 APQDEKF--RYIIE---LAERGTFEPLSF---CSTCLVRKPIRSKHCSI 404
Q KF YI + ER L F L I SK+ +
Sbjct: 523 TLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENL----ICSKYTDL 567
Score = 39.5 bits (91), Expect = 0.003
Identities = 86/603 (14%), Positives = 171/603 (28%), Gaps = 177/603 (29%)
Query: 30 VNEPDSETVT-LLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVV 88
+ D+ + T L W ++ + E+++ F+ + V I +P+ RQ + + +
Sbjct: 55 IMSKDAVSGTLRLFWTLLSKQEEMVQKFVEE---VLRINYKFLMSPIKTEQRQPSMMTRM 111
Query: 89 LLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKV 148
+ Q D D++ A++ +R+ YL + AL+
Sbjct: 112 YIEQR--DRLYNDNQ------VFAKYNVSRLQPYLKLR------------QALL------ 145
Query: 149 FSLDPTRLLITFG--------------ASTTIQDKIHGNVALHWAIYAKNHVAITTLVSH 194
L P + ++ G S +Q K+ + W + + S
Sbjct: 146 -ELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKI--FW-------LNLKNCNSP 195
Query: 195 TSSLEIPNAQGLTPFMLLEENIGAPWLGKATVDKITELKDHYNTQQNIIHRFSKSKTTRA 254
+ LE+ L I W + D + +K ++ Q + R KSK
Sbjct: 196 ETVLEMLQK--------LLYQIDPNW--TSRSDHSSNIKLRIHSIQAELRRLLKSK---- 241
Query: 255 RYMFALPFVMFGLI-----------GFIFQAQI---------------AYMAKLAL---- 284
Y L L+ F +I A ++L
Sbjct: 242 PYENCL------LVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHS 295
Query: 285 --FI---SLYIVMQVIGTVMFD--ERLFKILPLPV-YFATKFWIYI-TWLFW-------- 327
++++ + D + P + A + TW W
Sbjct: 296 MTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKL 355
Query: 328 ----------ITPVV--NFFVSLLFF--------STSGVLWYNFIKCWKGDPGVITAPQD 367
+ P F L F ++W++ I K D V+ +
Sbjct: 356 TTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI---KSDVMVVVN-KL 411
Query: 368 EKFRYIIELAERGTFE-PLSFCSTCLVRKPIRSKHCSICNRCVAKFDHHCPWVGNCIGAK 426
K+ + + + T P + + + + H SI + + I
Sbjct: 412 HKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDH-YNIPKTFDSD--DLIPPY 468
Query: 427 NHKYFVGYISSLLFMCCFVLYGIAKYWKSKCQFQLSHEREVMFVVWDMLQCD-GWVG--- 482
+YF +I + + ER +F M+ D ++
Sbjct: 469 LDQYFYSHIG---------------HHLKNIE---HPERMTLF---RMVFLDFRFLEQKI 507
Query: 483 -FILLNAFVHAIWITVLLSCQLY-QIISLGMTTNERMNANRYHHFIANPQGQFISPFHRG 540
+ L + Y I ER+ N F+ + I +
Sbjct: 508 RHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERL-VNAILDFLPKIEENLICSKYTD 566
Query: 541 RLQ 543
L+
Sbjct: 567 LLR 569
>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1;
RCHY1, structural genomics, NPPSFA; NMR {Mus musculus}
SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A
Length = 143
Score = 34.3 bits (78), Expect = 0.037
Identities = 9/34 (26%), Positives = 11/34 (32%), Gaps = 3/34 (8%)
Query: 386 SFCSTCLVRKPIRSKHCSICNRCVAKF---DHHC 416
C C + HC CN C+ H C
Sbjct: 102 ESCGICRIGPKEDFFHCLKCNLCLTTNLRGKHKC 135
>3nis_A E3 ubiquitin-protein ligase UBR1; E3 ubiquitin ligase, UBR BOX,
zinc-binding protein, N-END RU ligase, metal binding
protein; 1.68A {Saccharomyces cerevisiae} PDB: 3nii_A
3nij_A 3nih_A 3nik_A 3nim_A 3nin_A 3nil_A 3nit_A
Length = 82
Score = 31.2 bits (70), Expect = 0.18
Identities = 16/75 (21%), Positives = 19/75 (25%), Gaps = 18/75 (24%)
Query: 383 EPLSFCSTCLVRKPIRSKHCSICNRCVAKFDHHCPWVGNCIGAKNHKYFVGYISSLLFMC 442
EPL C C C +C C DH NH +
Sbjct: 19 EPLYRCHECGC-----DDTCVLCIHCFNPKDH-----------VNHHVCTDICTEFTSGI 62
Query: 443 CFVLYGIAKYWKSKC 457
C G + W S
Sbjct: 63 C--DCGDEEAWNSPL 75
>3ny3_A E3 ubiquitin-protein ligase UBR2; zinc finger-like, ubiquitin
ligase, protein binding, lygase,; 1.60A {Homo sapiens}
PDB: 3ny2_A 3ny1_A
Length = 75
Score = 30.7 bits (69), Expect = 0.20
Identities = 17/76 (22%), Positives = 23/76 (30%), Gaps = 22/76 (28%)
Query: 383 EPLSFCSTCLVRKPIRSKHCSICNRCVAKFDHHCPWVGNCIGAKNHKYFVGYISSLLFMC 442
EP C C V C +C C H ++H+Y + S C
Sbjct: 15 EPTYSCRDCAV-----DPTCVLCMECFLGSIH-----------RDHRYRM-TTSGGGGFC 57
Query: 443 -CFVLYGIAKYWKSKC 457
C G + WK
Sbjct: 58 DC----GDTEAWKEGP 69
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 72
Score = 29.3 bits (66), Expect = 0.52
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 386 SFCSTCLVRKPIRSKHCSICNRCVAK 411
+FC +C+VR S C CN V +
Sbjct: 37 TFCKSCIVRHFYYSNRCPKCNIVVHQ 62
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.7 bits (68), Expect = 0.62
Identities = 8/30 (26%), Positives = 12/30 (40%), Gaps = 5/30 (16%)
Query: 22 KCVEAGQDVNEPDSETVTLLHWAAINNRIE 51
K ++A + DS L AI +E
Sbjct: 23 KKLQASLKLYADDSAP-AL----AIKATME 47
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb,
E3-ligase, nuclear protein, chromosomal protein,
transcription regulation; 2.0A {Mus musculus} PDB:
3rpg_B 2h0d_A
Length = 108
Score = 30.2 bits (68), Expect = 0.66
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 386 SFCSTCLVRKPIRSKHCSICNRCVAK 411
SFC TC+VR SK+C IC+ V K
Sbjct: 37 SFCKTCIVRYLETSKYCPICDVQVHK 62
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex,
chimera; 2.21A {Rattus norvegicus}
Length = 133
Score = 29.0 bits (64), Expect = 2.1
Identities = 8/29 (27%), Positives = 12/29 (41%)
Query: 387 FCSTCLVRKPIRSKHCSICNRCVAKFDHH 415
FCS CL + C C + + +H
Sbjct: 101 FCSQCLRDSLKNANTCPTCRKKINHKRYH 129
>4epo_C E3 ubiquitin-protein ligase RNF8; coiled-coil, E3 ubiquitin ligase,
protein binding complex; 4.80A {Homo sapiens}
Length = 149
Score = 28.5 bits (63), Expect = 3.7
Identities = 12/38 (31%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 386 SFCSTCLVRKPIRSKHCSICNRCVAKFDHHCPWVGNCI 423
SFCS C+ R C IC + + + + NCI
Sbjct: 85 SFCSYCINEWMKRKIECPICRKDIKSKT-YSLVLDNCI 121
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding,
translesion synthesis, UB conjugation pathway; 1.80A
{Homo sapiens}
Length = 99
Score = 26.7 bits (59), Expect = 9.2
Identities = 5/21 (23%), Positives = 9/21 (42%)
Query: 386 SFCSTCLVRKPIRSKHCSICN 406
++CS C+ + C C
Sbjct: 44 NYCSLCIRKFLSYKTQCPTCC 64
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.328 0.140 0.461
Gapped
Lambda K H
0.267 0.0544 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 9,255,741
Number of extensions: 557929
Number of successful extensions: 2441
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1596
Number of HSP's successfully gapped: 318
Length of query: 584
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 485
Effective length of database: 3,937,614
Effective search space: 1909742790
Effective search space used: 1909742790
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 60 (27.3 bits)