BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9493
(175 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2P01|A Chain A, The Structure Of Receptor-Associated Protein(Rap)
pdb|2P03|A Chain A, The Structure Of Receptor-Associated Protein(Rap)
Length = 323
Score = 73.2 bits (178), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 59/157 (37%), Positives = 81/157 (51%), Gaps = 24/157 (15%)
Query: 21 YSRESNVRFKSQLDVEPNIQLRHLDNPFRMGKLNLLWKKAQVRLSEP--KLKSIYNELKI 78
YSRE N Q P R FRM KLN LW+KAQ RL P +L ++ +LKI
Sbjct: 1 YSREKN-----QPKPSPK---RESGEEFRMEKLNQLWEKAQ-RLHLPPVRLAELHADLKI 51
Query: 79 HDKEEILFKKVKADGLDPDGQREGILRKRLVGIMSTYGLLEHFEDIQGEKIKLDTDDNAP 138
+++E+ +KK+K DGLD DG++E L + L I++ YGL G+K N+
Sbjct: 52 QERDELAWKKLKLDGLDEDGEKEARLIRNLNVILAKYGL-------DGKKDARQVTSNSL 104
Query: 139 VHKPRAVFKDKKLNKLWEKAEHSGFTCKNVKFNNQEL 175
D +L KLW KA+ SG KF+ +EL
Sbjct: 105 SGTQEDGLDDPRLEKLWHKAKTSG------KFSGEEL 135
>pdb|1OV2|A Chain A, Ensemble Of The Solution Structures Of Domain One Of
Receptor Associated Protein
Length = 99
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/98 (41%), Positives = 58/98 (59%), Gaps = 9/98 (9%)
Query: 21 YSRESNVRFKSQLDVEPNIQLRHLDNPFRMGKLNLLWKKAQ-VRLSEPKLKSIYNELKIH 79
YSRE N Q P R FRM KLN LW+KAQ + L +L ++ +LKI
Sbjct: 1 YSREKN-----QPKPSPK---RESGEEFRMEKLNQLWEKAQRLHLPPVRLAELHADLKIQ 52
Query: 80 DKEEILFKKVKADGLDPDGQREGILRKRLVGIMSTYGL 117
+++E+ +KK+K DGLD DG++E L + L I++ YGL
Sbjct: 53 ERDELAWKKLKLDGLDEDGEKEARLIRNLNVILAKYGL 90
>pdb|1OP1|A Chain A, Solution Nmr Structure Of Domain 1 Of Receptor Associated
Protein
Length = 82
Score = 61.6 bits (148), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/72 (48%), Positives = 51/72 (70%), Gaps = 3/72 (4%)
Query: 48 FRMGKLNLLWKKAQVRLSEP--KLKSIYNELKIHDKEEILFKKVKADGLDPDGQREGILR 105
FRM KLN LW+KAQ RL P +L ++ +LKI +++E+ +KK+K DGLD DG++E L
Sbjct: 4 FRMEKLNQLWEKAQ-RLHLPPVRLAELHADLKIQERDELAWKKLKLDGLDEDGEKEARLI 62
Query: 106 KRLVGIMSTYGL 117
+ L I++ YGL
Sbjct: 63 RNLNVILAKYGL 74
>pdb|1LRE|A Chain A, Receptor Associated Protein (Rap) Domain 1, Nmr, 20
Structures
pdb|1NRE|A Chain A, Receptor Associated Protein (Rap) Domain 1, Nmr, Minimized
Average Structure
pdb|2FYL|A Chain A, Haddock Model Of The Complex Between Double Module Of Lrp,
Cr56, And First Domain Of Receptor Associated Protein,
Rap- D1
Length = 81
Score = 61.6 bits (148), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/72 (48%), Positives = 51/72 (70%), Gaps = 3/72 (4%)
Query: 48 FRMGKLNLLWKKAQVRLSEP--KLKSIYNELKIHDKEEILFKKVKADGLDPDGQREGILR 105
FRM KLN LW+KAQ RL P +L ++ +LKI +++E+ +KK+K DGLD DG++E L
Sbjct: 4 FRMEKLNQLWEKAQ-RLHLPPVRLAELHADLKIQERDELAWKKLKLDGLDEDGEKEARLI 62
Query: 106 KRLVGIMSTYGL 117
+ L I++ YGL
Sbjct: 63 RNLNVILAKYGL 74
>pdb|3MTC|A Chain A, Crystal Structure Of Inpp5b In Complex With
Phosphatidylinositol 4- Phosphate
Length = 313
Score = 28.1 bits (61), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Query: 78 IHD--KEEILFKKVKADGLDPDGQREGILRKRLVGIM 112
HD KEE FK V ++GL PD + + RLVGIM
Sbjct: 56 FHDTPKEEEWFKAV-SEGLHPDAKYAKVKLIRLVGIM 91
>pdb|3N9V|A Chain A, Crystal Structure Of Inpp5b
pdb|3N9V|B Chain B, Crystal Structure Of Inpp5b
Length = 313
Score = 28.1 bits (61), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Query: 78 IHD--KEEILFKKVKADGLDPDGQREGILRKRLVGIM 112
HD KEE FK V ++GL PD + + RLVGIM
Sbjct: 53 FHDTPKEEEWFKAV-SEGLHPDAKYAKVKLIRLVGIM 88
>pdb|2WN6|A Chain A, Structural Basis For Substrate Recognition In The
Enzymatic Component Of Adp-Ribosyltransferase Toxin Cdta
From Clostridium Difficile
Length = 463
Score = 27.3 bits (59), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Query: 108 LVGIMSTYGLLE---HFEDIQGEKIKL-DTDDNAPVHKPRAVFKDKKLNKLWEKAE 159
L+ ++ GLL + +D+Q K+ +T AP+ +P KDK+ K WE+ E
Sbjct: 18 LILYLTLGGLLPNNIYAQDLQSYSEKVCNTTYKAPIERPEDFLKDKEKAKEWERKE 73
>pdb|2WN4|A Chain A, Structural Basis For Substrate Recognition In The
Enzymatic Component Of Adp-Ribosyltransferase Toxin Cdta
From Clostridium Difficile
pdb|2WN5|A Chain A, Structural Basis For Substrate Recognition In The
Enzymatic Component Of Adp-Ribosyltransferase Toxin Cdta
From Clostridium Difficile
pdb|2WN7|A Chain A, Structural Basis For Substrate Recognition In The
Enzymatic Component Of Adp-Ribosyltransferase Toxin Cdta
From Clostridium Difficile
pdb|2WN8|A Chain A, Structural Basis For Substrate Recognition In The
Enzymatic Component Of Adp-Ribosyltransferase Toxin Cdta
From Clostridium Difficile
Length = 463
Score = 27.3 bits (59), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Query: 108 LVGIMSTYGLLE---HFEDIQGEKIKL-DTDDNAPVHKPRAVFKDKKLNKLWEKAE 159
L+ ++ GLL + +D+Q K+ +T AP+ +P KDK+ K WE+ E
Sbjct: 18 LILYLTLGGLLPNNIYAQDLQSYSEKVCNTTYKAPIERPEDFLKDKEKAKEWERKE 73
>pdb|2GHG|A Chain A, H-Chk1 Complexed With A431994
pdb|2YWP|A Chain A, Crystal Structure Of Chk1 With A Urea Inhibitor
pdb|2E9N|A Chain A, Structure Of H-chk1 Complexed With A767085
pdb|2E9O|A Chain A, Structure Of H-Chk1 Complexed With Aa582939
pdb|2E9P|A Chain A, Structure Of H-Chk1 Complexed With A771129
pdb|2E9U|A Chain A, Structure Of H-Chk1 Complexed With A780125
Length = 269
Score = 27.3 bits (59), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Query: 85 LFKKVKAD-GL-DPDGQREGILRKRLVGIMSTYGLLEHFEDIQGEKIKLDTDDN 136
LF +++ D G+ +PD QR + + G++ +G+ DI+ E + LD DN
Sbjct: 91 LFDRIEPDIGMPEPDAQR--FFHQLMAGVVYLHGIGITHRDIKPENLLLDERDN 142
>pdb|2E9V|A Chain A, Structure Of H-Chk1 Complexed With A859017
pdb|2E9V|B Chain B, Structure Of H-Chk1 Complexed With A859017
Length = 268
Score = 27.3 bits (59), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Query: 85 LFKKVKAD-GL-DPDGQREGILRKRLVGIMSTYGLLEHFEDIQGEKIKLDTDDN 136
LF +++ D G+ +PD QR + + G++ +G+ DI+ E + LD DN
Sbjct: 91 LFDRIEPDIGMPEPDAQR--FFHQLMAGVVYLHGIGITHRDIKPENLLLDERDN 142
>pdb|4FSN|A Chain A, Crystal Structure Of The Chk1
Length = 278
Score = 27.3 bits (59), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Query: 85 LFKKVKAD-GL-DPDGQREGILRKRLVGIMSTYGLLEHFEDIQGEKIKLDTDDN 136
LF +++ D G+ +PD QR + + G++ +G+ DI+ E + LD DN
Sbjct: 90 LFDRIEPDIGMPEPDAQR--FFHQLMAGVVYLHGIGITHRDIKPENLLLDERDN 141
>pdb|4FSM|A Chain A, Crystal Structure Of The Chk1
pdb|4FSQ|A Chain A, Crystal Structure Of The Chk1
pdb|4FSR|A Chain A, Crystal Structure Of The Chk1
pdb|4FT0|A Chain A, Crystal Structure Of The Chk1
pdb|4FT5|A Chain A, Crystal Structure Of The Chk1
pdb|4FT7|A Chain A, Crystal Structure Of The Chk1
pdb|4FT9|A Chain A, Crystal Structure Of The Chk1
pdb|4FTI|A Chain A, Crystal Structure Of The Chk1
pdb|4FTJ|A Chain A, Crystal Structure Of The Chk1
pdb|4FTK|A Chain A, Crystal Structure Of The Chk1
pdb|4FTL|A Chain A, Crystal Structure Of The Chk1
pdb|4FTM|A Chain A, Crystal Structure Of The Chk1
pdb|4FTO|A Chain A, Crystal Structure Of The Chk1
pdb|4FTR|A Chain A, Crystal Structure Of The Chk1
pdb|4FTT|A Chain A, Crystal Structure Of The Chk1
pdb|4FTU|A Chain A, Crystal Structure Of The Chk1
Length = 279
Score = 27.3 bits (59), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Query: 85 LFKKVKAD-GL-DPDGQREGILRKRLVGIMSTYGLLEHFEDIQGEKIKLDTDDN 136
LF +++ D G+ +PD QR + + G++ +G+ DI+ E + LD DN
Sbjct: 91 LFDRIEPDIGMPEPDAQR--FFHQLMAGVVYLHGIGITHRDIKPENLLLDERDN 142
>pdb|2R0U|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 54
pdb|2QHM|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 2a
pdb|2QHN|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 1a
pdb|3TKH|A Chain A, Crystal Structure Of Chk1 In Complex With Inhibitor S01
pdb|3TKI|A Chain A, Crystal Structure Of Chk1 In Complex With Inhibitor S25
Length = 323
Score = 27.3 bits (59), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Query: 85 LFKKVKAD-GL-DPDGQREGILRKRLVGIMSTYGLLEHFEDIQGEKIKLDTDDN 136
LF +++ D G+ +PD QR + + G++ +G+ DI+ E + LD DN
Sbjct: 92 LFDRIEPDIGMPEPDAQR--FFHQLMAGVVYLHGIGITHRDIKPENLLLDERDN 143
>pdb|2HOG|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 20
pdb|2HXL|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 1
pdb|2HXQ|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 2
pdb|2HY0|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 22
pdb|3F9N|A Chain A, Crystal Structure Of Chk1 Kinase In Complex With Inhibitor
38
Length = 322
Score = 27.3 bits (59), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Query: 85 LFKKVKAD-GL-DPDGQREGILRKRLVGIMSTYGLLEHFEDIQGEKIKLDTDDN 136
LF +++ D G+ +PD QR + + G++ +G+ DI+ E + LD DN
Sbjct: 91 LFDRIEPDIGMPEPDAQR--FFHQLMAGVVYLHGIGITHRDIKPENLLLDERDN 142
>pdb|2AYP|A Chain A, Crystal Structure Of Chk1 With An Indol Inhibitor
Length = 269
Score = 27.3 bits (59), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Query: 85 LFKKVKAD-GL-DPDGQREGILRKRLVGIMSTYGLLEHFEDIQGEKIKLDTDDN 136
LF +++ D G+ +PD QR + + G++ +G+ DI+ E + LD DN
Sbjct: 92 LFDRIEPDIGMPEPDAQR--FFHQLMAGVVYLHGIGITHRDIKPENLLLDERDN 143
>pdb|4FSY|A Chain A, Crystal Structure Of The Chk1
Length = 279
Score = 27.3 bits (59), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Query: 85 LFKKVKAD-GL-DPDGQREGILRKRLVGIMSTYGLLEHFEDIQGEKIKLDTDDN 136
LF +++ D G+ +PD QR + + G++ +G+ DI+ E + LD DN
Sbjct: 91 LFDRIEPDIGMPEPDAQR--FFHQLMAGVVYLHGIGITHRDIKPENLLLDERDN 142
>pdb|4FSW|A Chain A, Crystal Structure Of The Chk1
pdb|4FTA|A Chain A, Crystal Structure Of The Chk1
pdb|4FTC|A Chain A, Crystal Structure Of The Chk1
pdb|4FTN|A Chain A, Crystal Structure Of The Chk1
pdb|4FTQ|A Chain A, Crystal Structure Of The Chk1
Length = 279
Score = 27.3 bits (59), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Query: 85 LFKKVKAD-GL-DPDGQREGILRKRLVGIMSTYGLLEHFEDIQGEKIKLDTDDN 136
LF +++ D G+ +PD QR + + G++ +G+ DI+ E + LD DN
Sbjct: 91 LFDRIEPDIGMPEPDAQR--FFHQLMAGVVYLHGIGITHRDIKPENLLLDERDN 142
>pdb|4FSU|A Chain A, Crystal Structure Of The Chk1
Length = 279
Score = 27.3 bits (59), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Query: 85 LFKKVKAD-GL-DPDGQREGILRKRLVGIMSTYGLLEHFEDIQGEKIKLDTDDN 136
LF +++ D G+ +PD QR + + G++ +G+ DI+ E + LD DN
Sbjct: 91 LFDRIEPDIGMPEPDAQR--FFHQLMAGVVYLHGIGITHRDIKPENLLLDERDN 142
>pdb|1ZYS|A Chain A, Co-Crystal Structure Of Checkpoint Kinase Chk1 With A
Pyrrolo-Pyridine Inhibitor
Length = 273
Score = 27.3 bits (59), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Query: 85 LFKKVKAD-GL-DPDGQREGILRKRLVGIMSTYGLLEHFEDIQGEKIKLDTDDN 136
LF +++ D G+ +PD QR + + G++ +G+ DI+ E + LD DN
Sbjct: 92 LFDRIEPDIGMPEPDAQR--FFHQLMAGVVYLHGIGITHRDIKPENLLLDERDN 143
>pdb|4FST|A Chain A, Crystal Structure Of The Chk1
Length = 269
Score = 27.3 bits (59), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Query: 85 LFKKVKAD-GL-DPDGQREGILRKRLVGIMSTYGLLEHFEDIQGEKIKLDTDDN 136
LF +++ D G+ +PD QR + + G++ +G+ DI+ E + LD DN
Sbjct: 91 LFDRIEPDIGMPEPDAQR--FFHQLMAGVVYLHGIGITHRDIKPENLLLDERDN 142
>pdb|3OT3|A Chain A, X-Ray Crystal Structure Of Compound 22k Bound To Human
Chk1 Kinase Domain
pdb|3OT8|A Chain A, X-Ray Crystal Structure Of Compound 17r Bound To Human
Chk1 Kinase Domain
pdb|3PA3|A Chain A, X-Ray Crystal Structure Of Compound 70 Bound To Human Chk1
Kinase Domain
pdb|3PA4|A Chain A, X-Ray Crystal Structure Of Compound 2a Bound To Human Chk1
Kinase Domain
pdb|3PA5|A Chain A, X-Ray Crystal Structure Of Compound 1 Bound To Human Chk1
Kinase Domain
pdb|3U9N|A Chain A, X-Ray Crystal Structure Of Compound 1 Bound To Human Chk1
Kinase Domain
Length = 273
Score = 27.3 bits (59), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Query: 85 LFKKVKAD-GL-DPDGQREGILRKRLVGIMSTYGLLEHFEDIQGEKIKLDTDDN 136
LF +++ D G+ +PD QR + + G++ +G+ DI+ E + LD DN
Sbjct: 91 LFDRIEPDIGMPEPDAQR--FFHQLMAGVVYLHGIGITHRDIKPENLLLDERDN 142
>pdb|3JVR|A Chain A, Characterization Of The Chk1 Allosteric Inhibitor Binding
Site
pdb|3JVS|A Chain A, Characterization Of The Chk1 Allosteric Inhibitor Binding
Site
Length = 271
Score = 27.3 bits (59), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Query: 85 LFKKVKAD-GL-DPDGQREGILRKRLVGIMSTYGLLEHFEDIQGEKIKLDTDDN 136
LF +++ D G+ +PD QR + + G++ +G+ DI+ E + LD DN
Sbjct: 91 LFDRIEPDIGMPEPDAQR--FFHQLMAGVVYLHGIGITHRDIKPENLLLDERDN 142
>pdb|2X8E|A Chain A, Discovery Of A Novel Class Of Triazolones As Checkpoint
Kinase Inhibitors - Hit To Lead Exploration
pdb|2YER|A Chain A, Synthesis And Evaluation Of Triazolones As Checkpoint
Kinase 1 Inhibitors
pdb|2YEX|A Chain A, Synthesis And Evaluation Of Triazolones As Checkpoint
Kinase 1 Inhibitors
pdb|2YDK|A Chain A, Discovery Of Checkpoint Kinase Inhibitor Azd7762 By
Structure Based Design And Optimization Of Thiophene
Carboxamide Ureas
Length = 276
Score = 26.9 bits (58), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Query: 85 LFKKVKAD-GL-DPDGQREGILRKRLVGIMSTYGLLEHFEDIQGEKIKLDTDDN 136
LF +++ D G+ +PD QR + + G++ +G+ DI+ E + LD DN
Sbjct: 92 LFDRIEPDIGMPEPDAQR--FFHQLMAGVVYLHGIGITHRDIKPENLLLDERDN 143
>pdb|4FT3|A Chain A, Crystal Structure Of The Chk1
pdb|4GH2|A Chain A, Crystal Structure Of The Chk1
Length = 279
Score = 26.9 bits (58), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Query: 85 LFKKVKAD-GL-DPDGQREGILRKRLVGIMSTYGLLEHFEDIQGEKIKLDTDDN 136
LF +++ D G+ +PD QR + + G++ +G+ DI+ E + LD DN
Sbjct: 91 LFDRIEPDIGMPEPDAQR--FFHQLMAGVVYLHGIGITHRDIKPENLLLDERDN 142
>pdb|4FSZ|A Chain A, Crystal Structure Of The Chk1
Length = 279
Score = 26.9 bits (58), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Query: 85 LFKKVKAD-GL-DPDGQREGILRKRLVGIMSTYGLLEHFEDIQGEKIKLDTDDN 136
LF +++ D G+ +PD QR + + G++ +G+ DI+ E + LD DN
Sbjct: 91 LFDRIEPDIGMPEPDAQR--FFHQLMAGVVYLHGIGITHRDIKPENLLLDERDN 142
>pdb|2YDJ|A Chain A, Discovery Of Checkpoint Kinase Inhibitor Azd7762 By
Structure Based Design And Optimization Of Thiophene
Carboxamide Ureas
pdb|2YDJ|B Chain B, Discovery Of Checkpoint Kinase Inhibitor Azd7762 By
Structure Based Design And Optimization Of Thiophene
Carboxamide Ureas
Length = 276
Score = 26.9 bits (58), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Query: 85 LFKKVKAD-GL-DPDGQREGILRKRLVGIMSTYGLLEHFEDIQGEKIKLDTDDN 136
LF +++ D G+ +PD QR + + G++ +G+ DI+ E + LD DN
Sbjct: 92 LFDRIEPDIGMPEPDAQR--FFHQLMAGVVYLHGIGITHRDIKPENLLLDERDN 143
>pdb|2BR1|A Chain A, Structure-Based Design Of Novel Chk1 Inhibitors: Insights
Into Hydrogen Bonding And Protein-Ligand Affinity
pdb|2BRB|A Chain A, Structure-Based Design Of Novel Chk1 Inhibitors: Insights
Into Hydrogen Bonding And Protein-Ligand Affinity
pdb|2BRG|A Chain A, Structure-Based Design Of Novel Chk1 Inhibitors: Insights
Into Hydrogen Bonding And Protein-Ligand Affinity
pdb|2BRH|A Chain A, Structure-Based Design Of Novel Chk1 Inhibitors: Insights
Into Hydrogen Bonding And Protein-Ligand Affinity
pdb|2BRM|A Chain A, Structure-Based Design Of Novel Chk1 Inhibitors: Insights
Into Hydrogen Bonding And Protein-Ligand Affinity
pdb|2BRN|A Chain A, Structure-Based Design Of Novel Chk1 Inhibitors: Insights
Into Hydrogen Bonding And Protein-Ligand Affinity
pdb|2BRO|A Chain A, Structure-Based Design Of Novel Chk1 Inhibitors: Insights
Into Hydrogen Bonding And Protein-Ligand Affinity
pdb|2C3J|A Chain A, Identification Of A Buried Pocket For Potent And Selective
Inhibition Of Chk1: Prediction And Verification
pdb|2C3K|A Chain A, Identification Of A Buried Pocket For Potent And Selective
Inhibition Of Chk1: Prediction And Verification
pdb|2C3L|A Chain A, Identification Of A Buried Pocket For Potent And Selective
Inhibition Of Chk1: Prediction And Verification
pdb|2CGU|A Chain A, Identification Of Chemically Diverse Chk1 Inhibitors By
Receptor-Based Virtual Screening
pdb|2CGV|A Chain A, Identification Of Chemically Diverse Chk1 Inhibitors By
Receptor-Based Virtual Screening
pdb|2CGW|A Chain A, Identification Of Chemically Diverse Chk1 Inhibitors By
Receptor-Based Virtual Screening
pdb|2CGX|A Chain A, Identification Of Chemically Diverse Chk1 Inhibitors By
Receptor-Based Virtual Screening
pdb|3NLB|A Chain A, Novel Kinase Profile Highlights The Temporal Basis Of
Context Dependent Checkpoint Pathways To Cell Death
Length = 297
Score = 26.9 bits (58), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Query: 85 LFKKVKAD-GL-DPDGQREGILRKRLVGIMSTYGLLEHFEDIQGEKIKLDTDDN 136
LF +++ D G+ +PD QR + + G++ +G+ DI+ E + LD DN
Sbjct: 92 LFDRIEPDIGMPEPDAQR--FFHQLMAGVVYLHGIGITHRDIKPENLLLDERDN 143
>pdb|1IA8|A Chain A, The 1.7 A Crystal Structure Of Human Cell Cycle Checkpoint
Kinase Chk1
pdb|1NVQ|A Chain A, The Complex Structure Of Checkpoint Kinase Chk1UCN-01
pdb|1NVR|A Chain A, The Complex Structure Of Checkpoint Kinase
Chk1STAUROSPORINE
pdb|1NVS|A Chain A, The Complex Structure Of Checkpoint Kinase Chk1SB218078
pdb|2WMQ|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2WMR|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2WMS|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2WMT|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2WMU|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2WMV|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2WMX|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2WMW|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2XEY|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2XF0|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2XEZ|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2X8D|A Chain A, Discovery Of A Novel Class Of Triazolones As Checkpoint
Kinase Inhibitors - Hit To Lead Exploration
pdb|2X8I|A Chain A, Discovery Of A Novel Class Of Triazolones As Checkpoint
Kinase Inhibitors - Hit To Lead Exploration
pdb|2YM3|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2YM4|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2YM5|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2YM6|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2YM7|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2YM8|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2YDI|A Chain A, Discovery Of Checkpoint Kinase Inhibitor Azd7762 By
Structure Based Design And Optimization Of Thiophene
Carboxamide Ureas
Length = 289
Score = 26.9 bits (58), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Query: 85 LFKKVKAD-GL-DPDGQREGILRKRLVGIMSTYGLLEHFEDIQGEKIKLDTDDN 136
LF +++ D G+ +PD QR + + G++ +G+ DI+ E + LD DN
Sbjct: 92 LFDRIEPDIGMPEPDAQR--FFHQLMAGVVYLHGIGITHRDIKPENLLLDERDN 143
>pdb|1ZLT|A Chain A, Crystal Structure Of Chk1 Complexed With A Hymenaldisine
Analog
pdb|2GDO|A Chain A, 4-(aminoalkylamino)-3-benzimidazole-quinolinones As Potent
Chk1 Inhibitors
Length = 295
Score = 26.9 bits (58), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Query: 85 LFKKVKAD-GL-DPDGQREGILRKRLVGIMSTYGLLEHFEDIQGEKIKLDTDDN 136
LF +++ D G+ +PD QR + + G++ +G+ DI+ E + LD DN
Sbjct: 92 LFDRIEPDIGMPEPDAQR--FFHQLMAGVVYLHGIGITHRDIKPENLLLDERDN 143
>pdb|2OXE|A Chain A, Structure Of The Human Pancreatic Lipase-Related Protein 2
pdb|2OXE|B Chain B, Structure Of The Human Pancreatic Lipase-Related Protein 2
Length = 466
Score = 26.9 bits (58), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
Query: 44 LDNPFRMGKLN---LLWKKAQVRLSEPKLKS 71
+D F +GK+ LW K + LSEPKL +
Sbjct: 391 IDVDFNVGKIQKVKFLWNKRGINLSEPKLGA 421
>pdb|2PVS|A Chain A, Structure Of Human Pancreatic Lipase Related Protein 2
Mutant N336q
pdb|2PVS|B Chain B, Structure Of Human Pancreatic Lipase Related Protein 2
Mutant N336q
Length = 452
Score = 26.9 bits (58), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
Query: 44 LDNPFRMGKLN---LLWKKAQVRLSEPKLKS 71
+D F +GK+ LW K + LSEPKL +
Sbjct: 389 IDVDFNVGKIQKVKFLWNKRGINLSEPKLGA 419
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.137 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,269,376
Number of Sequences: 62578
Number of extensions: 212701
Number of successful extensions: 518
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 480
Number of HSP's gapped (non-prelim): 37
length of query: 175
length of database: 14,973,337
effective HSP length: 92
effective length of query: 83
effective length of database: 9,216,161
effective search space: 764941363
effective search space used: 764941363
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)