BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9493
(175 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P30533|AMRP_HUMAN Alpha-2-macroglobulin receptor-associated protein OS=Homo sapiens
GN=LRPAP1 PE=1 SV=1
Length = 357
Score = 74.7 bits (182), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 61/164 (37%), Positives = 83/164 (50%), Gaps = 24/164 (14%)
Query: 14 AVSSENIYSRESNVRFKSQLDVEPNIQLRHLDNPFRMGKLNLLWKKAQVRLSEP--KLKS 71
A S YSRE N Q P R FRM KLN LW+KAQ RL P +L
Sbjct: 28 AASHGGKYSREKN-----QPKPSPK---RESGEEFRMEKLNQLWEKAQ-RLHLPPVRLAE 78
Query: 72 IYNELKIHDKEEILFKKVKADGLDPDGQREGILRKRLVGIMSTYGLLEHFEDIQGEKIKL 131
++ +LKI +++E+ +KK+K DGLD DG++E L + L I++ YGL G+K
Sbjct: 79 LHADLKIQERDELAWKKLKLDGLDEDGEKEARLIRNLNVILAKYGL-------DGKKDAR 131
Query: 132 DTDDNAPVHKPRAVFKDKKLNKLWEKAEHSGFTCKNVKFNNQEL 175
N+ D +L KLW KA+ SG KF+ +EL
Sbjct: 132 QVTSNSLSGTQEDGLDDPRLEKLWHKAKTSG------KFSGEEL 169
>sp|Q99068|AMRP_RAT Alpha-2-macroglobulin receptor-associated protein OS=Rattus
norvegicus GN=Lrpap1 PE=1 SV=2
Length = 360
Score = 74.3 bits (181), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 57/157 (36%), Positives = 83/157 (52%), Gaps = 24/157 (15%)
Query: 21 YSRESNVRFKSQLDVEPNIQL-RHLDNPFRMGKLNLLWKKA-QVRLSEPKLKSIYNELKI 78
YSRE N EP + R FRM KLN LW+KA ++ LS +L ++++LKI
Sbjct: 38 YSREKN---------EPEMAAKRESGEEFRMEKLNQLWEKAKRLHLSPVRLAELHSDLKI 88
Query: 79 HDKEEILFKKVKADGLDPDGQREGILRKRLVGIMSTYGLLEHFEDIQGEKIKLDTDDNAP 138
+++E+ +KK+K +GLD DG++E L L I++ YGL G K NA
Sbjct: 89 QERDELNWKKLKVEGLDGDGEKEAKLVHNLNVILARYGL-------DGRKDTQTVHSNAL 141
Query: 139 VHKPRAVFKDKKLNKLWEKAEHSGFTCKNVKFNNQEL 175
+ D +L KLW KA+ SG KF+++EL
Sbjct: 142 NEDTQDELGDPRLEKLWHKAKTSG------KFSSEEL 172
>sp|P55302|AMRP_MOUSE Alpha-2-macroglobulin receptor-associated protein OS=Mus musculus
GN=Lrpap1 PE=1 SV=1
Length = 360
Score = 73.2 bits (178), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 57/157 (36%), Positives = 83/157 (52%), Gaps = 24/157 (15%)
Query: 21 YSRESNVRFKSQLDVEPNIQL-RHLDNPFRMGKLNLLWKKA-QVRLSEPKLKSIYNELKI 78
YSRE N EP + R FRM KLN LW+KA ++ LS +L ++++LKI
Sbjct: 38 YSREKN---------EPEMAAKRESGEEFRMEKLNQLWEKAKRLHLSPVRLAELHSDLKI 88
Query: 79 HDKEEILFKKVKADGLDPDGQREGILRKRLVGIMSTYGLLEHFEDIQGEKIKLDTDDNAP 138
+++E+ +KK+K +GLD DG++E L L I++ YGL G K NA
Sbjct: 89 QERDELNWKKLKVEGLDKDGEKEAKLIHNLNVILARYGL-------DGRKDAQMVHSNAL 141
Query: 139 VHKPRAVFKDKKLNKLWEKAEHSGFTCKNVKFNNQEL 175
+ D +L KLW KA+ SG KF+++EL
Sbjct: 142 NEDTQDELGDPRLEKLWHKAKTSG------KFSSEEL 172
>sp|Q09270|YQF6_CAEEL CRAL-TRIO domain-containing protein C34C12.6 OS=Caenorhabditis
elegans GN=C34C12.6 PE=4 SV=2
Length = 400
Score = 33.1 bits (74), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 54/114 (47%), Gaps = 16/114 (14%)
Query: 39 IQLRHLDNPFRMGKLNLLWKKAQVRLSEPKLKSIYNELKIHDKEEILFKKV------KAD 92
+Q +L NP R+ L LLWK A+V LSE LK I E+ I DK ++ K + K
Sbjct: 208 VQRIYLTNPPRL--LGLLWKVARVFLSEENLKRI--EI-ISDKSDLAGKFLPPWLVPKEY 262
Query: 93 GLD-----PDGQREGILRKRLVGIMSTYGLLEHFEDIQGEKIKLDTDDNAPVHK 141
G + P G G+ +R + Y +H+++ ++ K D +P K
Sbjct: 263 GGEFVNTVPPGDETGVSVRRKITSADYYKPYQHYKEHGIDRPKSSHKDVSPAEK 316
>sp|Q80VA5|S3TC2_MOUSE SH3 domain and tetratricopeptide repeat-containing protein 2 OS=Mus
musculus GN=Sh3tc2 PE=2 SV=2
Length = 1289
Score = 32.0 bits (71), Expect = 2.0, Method: Composition-based stats.
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 5/40 (12%)
Query: 131 LDTDDNAPVHKPRAVFKDKKLNKLW-----EKAEHSGFTC 165
+D D +P+ K A F D++ + LW KAE SGF C
Sbjct: 325 IDLDSCSPMSKNSAFFSDEERSSLWSPGSERKAECSGFLC 364
>sp|P54786|ZDS2_YEAST Protein ZDS2 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=ZDS2 PE=1 SV=1
Length = 942
Score = 30.0 bits (66), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 28/40 (70%), Gaps = 3/40 (7%)
Query: 128 KIKLDTDDNAPVHKPRAVFKDKKLNKLWEKAEHSGFTCKN 167
K++L TD A HK ++ +K+L KL+++ +H+G TCK+
Sbjct: 637 KVELPTDTQASTHKKNSL--EKRLAKLFKRKQHNG-TCKS 673
>sp|A2RIG0|GLMM_LACLM Phosphoglucosamine mutase OS=Lactococcus lactis subsp. cremoris
(strain MG1363) GN=glmM PE=3 SV=1
Length = 452
Score = 30.0 bits (66), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Query: 96 PDGQREGILRKRLVGIMSTYGLLEHFE--DIQGEKIKLDTDDNAPVHKPRAVFKDKKLN 152
P Q G+L + G+ L+ D +G + LDT + A RAVF D K N
Sbjct: 142 PSAQGLGMLHDYIEGVRKYQAFLKTTAEGDFEGYNVVLDTANGASYTSARAVFADLKAN 200
>sp|Q031P2|GLMM_LACLS Phosphoglucosamine mutase OS=Lactococcus lactis subsp. cremoris
(strain SK11) GN=glmM PE=3 SV=1
Length = 452
Score = 30.0 bits (66), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Query: 96 PDGQREGILRKRLVGIMSTYGLLEHFE--DIQGEKIKLDTDDNAPVHKPRAVFKDKKLN 152
P Q G+L + G+ L+ D +G + LDT + A RAVF D K N
Sbjct: 142 PSAQGLGMLHDYIEGVRKYQAFLKTTAEGDFEGYNVVLDTANGASYTSARAVFADLKAN 200
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.137 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,276,937
Number of Sequences: 539616
Number of extensions: 2712047
Number of successful extensions: 6793
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 6778
Number of HSP's gapped (non-prelim): 30
length of query: 175
length of database: 191,569,459
effective HSP length: 110
effective length of query: 65
effective length of database: 132,211,699
effective search space: 8593760435
effective search space used: 8593760435
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)