Query psy9493
Match_columns 175
No_of_seqs 87 out of 104
Neff 4.5
Searched_HMMs 29240
Date Fri Aug 16 20:48:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9493.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9493hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2p01_A Alpha-2-macroglobulin r 100.0 3.3E-47 1.1E-51 332.8 14.3 139 21-175 1-142 (323)
2 1ov2_A Alpha-2-macroglobulin r 100.0 3.5E-38 1.2E-42 235.3 9.4 91 21-119 1-92 (99)
3 1lre_A Receptor-associated pro 100.0 2.3E-32 7.9E-37 197.6 9.3 75 45-119 1-76 (81)
4 2p01_A Alpha-2-macroglobulin r 99.9 2E-25 6.9E-30 195.4 10.7 117 44-175 108-247 (323)
5 2fcw_A Alpha-2-macroglobulin r 97.8 3.4E-05 1.2E-09 58.6 6.0 45 45-89 1-46 (109)
6 1lre_A Receptor-associated pro 93.3 0.083 2.8E-06 38.1 3.9 32 144-175 2-33 (81)
7 1ov2_A Alpha-2-macroglobulin r 91.3 0.14 4.9E-06 38.1 3.2 34 142-175 16-49 (99)
8 1g6u_A Domain swapped dimer; d 74.5 3.7 0.00013 26.2 3.6 24 63-86 16-39 (48)
9 1g6u_A Domain swapped dimer; d 62.6 3.4 0.00012 26.4 1.6 18 158-175 12-29 (48)
10 2jvd_A UPF0291 protein YNZC; s 49.7 14 0.00047 24.6 2.9 21 50-70 7-28 (54)
11 3bhp_A UPF0291 protein YNZC; N 48.5 14 0.00049 24.9 2.9 22 49-70 6-28 (60)
12 2jvd_A UPF0291 protein YNZC; s 42.0 24 0.00081 23.4 3.2 21 149-169 8-28 (54)
13 3bhp_A UPF0291 protein YNZC; N 40.9 25 0.00084 23.7 3.2 21 149-169 8-28 (60)
14 2hep_A UPF0291 protein YNZC; S 40.3 21 0.00072 25.6 2.9 22 49-70 6-28 (85)
15 2ki0_A DS119; beta-alpha-beta, 28.4 26 0.0009 21.0 1.5 13 162-174 11-23 (36)
16 2hep_A UPF0291 protein YNZC; S 26.6 40 0.0014 24.2 2.5 21 149-169 8-28 (85)
17 3q4o_A Uncharacterized protein 22.7 1E+02 0.0035 25.0 4.5 42 107-165 71-113 (196)
18 1e0g_A Membrane-bound lytic mu 22.6 52 0.0018 19.0 2.1 19 153-171 12-30 (48)
No 1
>2p01_A Alpha-2-macroglobulin receptor-associated protein; RAP, cell adhesion; NMR {Homo sapiens} PDB: 2p03_A
Probab=100.00 E-value=3.3e-47 Score=332.76 Aligned_cols=139 Identities=36% Similarity=0.573 Sum_probs=128.1
Q ss_pred chhhhcccccccCCCCCcccccCCCCccchhhhHHHHHHHHc-cCCHHHHHHHHHHhhhhHHHHHHHHhhhhcCCCCCch
Q psy9493 21 YSRESNVRFKSQLDVEPNIQLRHLDNPFRMGKLNLLWKKAQV-RLSEPKLKSIYNELKIHDKEEILFKKVKADGLDPDGQ 99 (175)
Q Consensus 21 ys~e~n~~~~~~~~~~~~~~~~~~~~~FR~~KLN~LWeKAq~-~fs~~eL~~L~~ELk~qeK~e~~~k~LK~eg~D~dG~ 99 (175)
||+|||.| |+||+|+++.||||+|||+||+||++ +||+++|++||+||++|||+|++||+||++|+|++|+
T Consensus 1 ys~e~n~p--------~~~~~~~~~~pFRm~KLN~lW~KA~~~~Lt~~kLk~l~~eLki~dkeElawK~lKa~g~DkdG~ 72 (323)
T 2p01_A 1 YSREKNQP--------KPSPKRESGEEFRMEKLNQLWEKAQRLHLPPVRLAELHADLKIQERDELAWKKLKLDGLDEDGE 72 (323)
T ss_dssp CCCCCCCC--------CCCCCCSCCCCSSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSCH
T ss_pred CchhcCCC--------CCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhHHHHHHHHHHhhcCCcccc
Confidence 99999998 47899999999999999999999998 9999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhhccccccchhhc-cccccccCCCCCCCCCCCCCCChhHHHHHHHHHhCC-CCHHHHHHHhhhC
Q psy9493 100 REGILRKRLVGIMSTYGLLEHFEDIQG-EKIKLDTDDNAPVHKPRAVFKDKKLNKLWEKAEHSG-FTCKNVKFNNQEL 175 (175)
Q Consensus 100 kEa~Lr~kl~~Il~kYgL~~~~~~~~~-~~~~~h~~l~d~~~~~~~~F~DpKl~kLW~kA~~sg-FS~eEL~sLk~EL 175 (175)
+||+||++|++||++|||.+ +.| .+++++ +.++.+++.|+||||++||++|++|| ||++||++||+||
T Consensus 73 kEaeLr~kL~~Il~kYgL~~----~~d~~k~k~~----~~~~~~~~~F~D~kL~KLW~kA~~sGkFs~eEL~~Lk~Ef 142 (323)
T 2p01_A 73 KEARLIRNLNVILAKYGLDG----KKDARQVTSN----SLSGTQEDGLDDPRLEKLWHKAKTSGKFSGEELDKLWREF 142 (323)
T ss_dssp HHHHHHHHHHHHHHHHTCCC----CCCCCCSCCC----CCCCSCCCSCCSHHHHHHHHHHHHHSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCc----ccchhhcccc----ccccccccccCChhHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 99999999999999999974 333 344444 23578899999999999999999999 9999999999996
No 2
>1ov2_A Alpha-2-macroglobulin receptor-associated protein precursor; helical protein; NMR {Homo sapiens} SCOP: a.13.1.1
Probab=100.00 E-value=3.5e-38 Score=235.27 Aligned_cols=91 Identities=43% Similarity=0.664 Sum_probs=73.9
Q ss_pred chhhhcccccccCCCCCcccccCCCCccchhhhHHHHHHHHc-cCCHHHHHHHHHHhhhhHHHHHHHHhhhhcCCCCCch
Q psy9493 21 YSRESNVRFKSQLDVEPNIQLRHLDNPFRMGKLNLLWKKAQV-RLSEPKLKSIYNELKIHDKEEILFKKVKADGLDPDGQ 99 (175)
Q Consensus 21 ys~e~n~~~~~~~~~~~~~~~~~~~~~FR~~KLN~LWeKAq~-~fs~~eL~~L~~ELk~qeK~e~~~k~LK~eg~D~dG~ 99 (175)
||||+|.| |+||+|+++.||||+|||+||+|||+ +||+++|++||+||++|||+|++||+||++|.|+||+
T Consensus 1 YS~e~N~p--------~~~s~r~~~~pFRmaKLN~lW~KAq~~~Ls~~KLk~l~~dLKi~dKeElawKklk~~gkDkdG~ 72 (99)
T 1ov2_A 1 YSREKNQP--------KPSPKRESGEEFRMEKLNQLWEKAQRLHLPPVRLAELHADLKIQERDELAWKKLKLDGLDEDGE 72 (99)
T ss_dssp ------------------------CCSSSCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCSSCH
T ss_pred CchhhcCC--------CCccccccccchHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhHHHHHHHHHHhhcCCccch
Confidence 99999998 37899999999999999999999998 9999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhhcccc
Q psy9493 100 REGILRKRLVGIMSTYGLLE 119 (175)
Q Consensus 100 kEa~Lr~kl~~Il~kYgL~~ 119 (175)
+||+||++|++||++|||.+
T Consensus 73 kEa~LR~kl~~Il~~ygLd~ 92 (99)
T 1ov2_A 73 KEARLIRNLNVILAKYGLDG 92 (99)
T ss_dssp HHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHHhCCCC
Confidence 99999999999999999974
No 3
>1lre_A Receptor-associated protein; low density lipoprotein receptor family associated protein, LDLR family associated protein, helix bundle; NMR {Homo sapiens} SCOP: a.13.1.1 PDB: 1nre_A 2fyl_A 1op1_A
Probab=99.97 E-value=2.3e-32 Score=197.64 Aligned_cols=75 Identities=44% Similarity=0.729 Sum_probs=73.0
Q ss_pred CCccchhhhHHHHHHHHc-cCCHHHHHHHHHHhhhhHHHHHHHHhhhhcCCCCCchhHHHHHHHHHHHHHhhcccc
Q psy9493 45 DNPFRMGKLNLLWKKAQV-RLSEPKLKSIYNELKIHDKEEILFKKVKADGLDPDGQREGILRKRLVGIMSTYGLLE 119 (175)
Q Consensus 45 ~~~FR~~KLN~LWeKAq~-~fs~~eL~~L~~ELk~qeK~e~~~k~LK~eg~D~dG~kEa~Lr~kl~~Il~kYgL~~ 119 (175)
++||||+|||+||+|||+ +||+++|++||+||++|||+|++||+||++|.|+||++||+||++|++||++|||.+
T Consensus 1 ~~pFRm~KLN~lW~KA~~~~L~~~KLk~l~~dLKi~dKeElawKklk~~gkDkdG~kEa~LR~kl~~Il~~ygLd~ 76 (81)
T 1lre_A 1 GEEFRMEKLNQLWEKAQRLHLPPVRLAELHADLKIQERDELAWKKLKLDGLDEDGEKEARLIRNLNVILAKYGLDG 76 (81)
T ss_dssp CCSSSSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTTSSHHHHHHHHHHHHHHHHCSSC
T ss_pred CCcchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhHHHHHHHHHHhhCCCccchHHHHHHHHHHHHHHHhCCCc
Confidence 469999999999999998 999999999999999999999999999999999999999999999999999999974
No 4
>2p01_A Alpha-2-macroglobulin receptor-associated protein; RAP, cell adhesion; NMR {Homo sapiens} PDB: 2p03_A
Probab=99.92 E-value=2e-25 Score=195.38 Aligned_cols=117 Identities=19% Similarity=0.299 Sum_probs=95.7
Q ss_pred CCCccchhhhHHHHHHHHc-c-CCHHHHHHHHHHhhh-hHHHHHHHHhhhhcC----CCCC--------c----h---hH
Q psy9493 44 LDNPFRMGKLNLLWKKAQV-R-LSEPKLKSIYNELKI-HDKEEILFKKVKADG----LDPD--------G----Q---RE 101 (175)
Q Consensus 44 ~~~~FR~~KLN~LWeKAq~-~-fs~~eL~~L~~ELk~-qeK~e~~~k~LK~eg----~D~d--------G----~---kE 101 (175)
..++|.|+|||+||+||++ + ||+++|++|+.||+| |+|+.+||..|...+ ..++ . . +-
T Consensus 108 ~~~~F~D~kL~KLW~kA~~sGkFs~eEL~~Lk~Ef~HHqeKv~eY~~LLe~~~~~~~~heN~I~~~~~~~~~E~~~~~k~ 187 (323)
T 2p01_A 108 QEDGLDDPRLEKLWHKAKTSGKFSGEELDKLWREFLHHKEKVHEYNVLLETLSRTEEIHENVISPSDLSDIKGSVLHSRH 187 (323)
T ss_dssp CCCSCCSHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTSCCCCSCSSSCCSSSSHHHHH
T ss_pred cccccCChhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCChhhhcchhhhhHHhhh
Confidence 3578999999999999999 7 999999999999999 788999999988743 1110 0 0 22
Q ss_pred HHHHHHHHHHHHhhccccccchhhccccccccCCCCCCCCCCC-CCCChhHHHHHHHHHhCCCCHHHHHHHhhhC
Q psy9493 102 GILRKRLVGIMSTYGLLEHFEDIQGEKIKLDTDDNAPVHKPRA-VFKDKKLNKLWEKAEHSGFTCKNVKFNNQEL 175 (175)
Q Consensus 102 a~Lr~kl~~Il~kYgL~~~~~~~~~~~~~~h~~l~d~~~~~~~-~F~DpKl~kLW~kA~~sgFS~eEL~sLk~EL 175 (175)
+.||.++++|.+.|+-+... .| +++..+ +|.+|||++||+.|++++||++||+||++||
T Consensus 188 ~~Lk~~~r~i~~~ydrL~rl---------~~------~g~~~~~eF~EPkVq~LW~lA~~~NFT~~ELeSlK~EL 247 (323)
T 2p01_A 188 TELKEKLRSINQGLDRLRRV---------SH------QGYSTEAEFEEPRVIDLWDLAQSANLTDKELEAFREEL 247 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---------HH------TSSCCSCSSCCTTHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHH---------Hh------cCCCcccCccChHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 78899999999988777321 11 234445 9999999999999999999999999999997
No 5
>2fcw_A Alpha-2-macroglobulin receptor-associated protein; protein-protein complex, RAP, escort protein, calcium- binding; 1.26A {Homo sapiens} SCOP: a.13.1.1 PDB: 2ftu_A
Probab=97.81 E-value=3.4e-05 Score=58.63 Aligned_cols=45 Identities=22% Similarity=0.310 Sum_probs=39.3
Q ss_pred CCccchhhhHHHHHHHHc-cCCHHHHHHHHHHhhhhHHHHHHHHhh
Q psy9493 45 DNPFRMGKLNLLWKKAQV-RLSEPKLKSIYNELKIHDKEEILFKKV 89 (175)
Q Consensus 45 ~~~FR~~KLN~LWeKAq~-~fs~~eL~~L~~ELk~qeK~e~~~k~L 89 (175)
+++|.-+|+.-||.-|+. .||+.||.+|+.||.|.|+.....+.+
T Consensus 1 ~~eF~EPkVq~LW~lA~~~NFT~~ELeSlK~EL~HfE~rl~K~rH~ 46 (109)
T 2fcw_A 1 GAEFEEPRVIDLWDLAQSANLTDKELEAFREELKHFEAKIEKHNHY 46 (109)
T ss_dssp CCSCCSHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468999999999999999 999999999999999998765544444
No 6
>1lre_A Receptor-associated protein; low density lipoprotein receptor family associated protein, LDLR family associated protein, helix bundle; NMR {Homo sapiens} SCOP: a.13.1.1 PDB: 1nre_A 2fyl_A 1op1_A
Probab=93.29 E-value=0.083 Score=38.05 Aligned_cols=32 Identities=31% Similarity=0.464 Sum_probs=29.2
Q ss_pred CCCCChhHHHHHHHHHhCCCCHHHHHHHhhhC
Q psy9493 144 AVFKDKKLNKLWEKAEHSGFTCKNVKFNNQEL 175 (175)
Q Consensus 144 ~~F~DpKl~kLW~kA~~sgFS~eEL~sLk~EL 175 (175)
.||.=.|||-||.+|+++-+|+--|.+|..||
T Consensus 2 ~pFRm~KLN~lW~KA~~~~L~~~KLk~l~~dL 33 (81)
T 1lre_A 2 EEFRMEKLNQLWEKAQRLHLPPVRLAELHADL 33 (81)
T ss_dssp CSSSSHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 47888999999999999899999999998775
No 7
>1ov2_A Alpha-2-macroglobulin receptor-associated protein precursor; helical protein; NMR {Homo sapiens} SCOP: a.13.1.1
Probab=91.35 E-value=0.14 Score=38.05 Aligned_cols=34 Identities=29% Similarity=0.431 Sum_probs=30.0
Q ss_pred CCCCCCChhHHHHHHHHHhCCCCHHHHHHHhhhC
Q psy9493 142 PRAVFKDKKLNKLWEKAEHSGFTCKNVKFNNQEL 175 (175)
Q Consensus 142 ~~~~F~DpKl~kLW~kA~~sgFS~eEL~sLk~EL 175 (175)
...+|.=-|||-||.+|+++-+|+--|.+|..||
T Consensus 16 ~~~pFRmaKLN~lW~KAq~~~Ls~~KLk~l~~dL 49 (99)
T 1ov2_A 16 SGEEFRMEKLNQLWEKAQRLHLPPVRLAELHADL 49 (99)
T ss_dssp -CCSSSCHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 3568999999999999997799999999998875
No 8
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=74.52 E-value=3.7 Score=26.20 Aligned_cols=24 Identities=21% Similarity=0.277 Sum_probs=20.7
Q ss_pred cCCHHHHHHHHHHhhhhHHHHHHH
Q psy9493 63 RLSEPKLKSIYNELKIHDKEEILF 86 (175)
Q Consensus 63 ~fs~~eL~~L~~ELk~qeK~e~~~ 86 (175)
+||+++|..|.+||+--+|+--+.
T Consensus 16 gfspeelaaleselqalekklaal 39 (48)
T 1g6u_A 16 GFSPEELAALESELQALEKKLAAL 39 (48)
T ss_dssp TCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988775443
No 9
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=62.60 E-value=3.4 Score=26.40 Aligned_cols=18 Identities=22% Similarity=0.366 Sum_probs=14.9
Q ss_pred HHhCCCCHHHHHHHhhhC
Q psy9493 158 AEHSGFTCKNVKFNNQEL 175 (175)
Q Consensus 158 A~~sgFS~eEL~sLk~EL 175 (175)
-+.-|||++||..|..||
T Consensus 12 lkkegfspeelaalesel 29 (48)
T 1g6u_A 12 LKKEGFSPEELAALESEL 29 (48)
T ss_dssp HHHTTCSHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHH
Confidence 356789999999998775
No 10
>2jvd_A UPF0291 protein YNZC; solution structure, construct optimization, cytoplasm, structural genomics, unknown function, PSI-2; NMR {Bacillus subtilis}
Probab=49.74 E-value=14 Score=24.58 Aligned_cols=21 Identities=24% Similarity=0.332 Sum_probs=17.6
Q ss_pred hhhhHHHHHHHHc-cCCHHHHH
Q psy9493 50 MGKLNLLWKKAQV-RLSEPKLK 70 (175)
Q Consensus 50 ~~KLN~LWeKAq~-~fs~~eL~ 70 (175)
+.|+|-|-.|++. +||++|..
T Consensus 7 i~RINeLakK~K~~gLT~eEk~ 28 (54)
T 2jvd_A 7 IARINELAAKAKAGVITEEEKA 28 (54)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHH
T ss_pred HHHHHHHHHHHhccCCCHHHHH
Confidence 6789999999998 99986543
No 11
>3bhp_A UPF0291 protein YNZC; NESG, SR384, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.01A {Bacillus subtilis}
Probab=48.54 E-value=14 Score=24.94 Aligned_cols=22 Identities=23% Similarity=0.357 Sum_probs=18.0
Q ss_pred chhhhHHHHHHHHc-cCCHHHHH
Q psy9493 49 RMGKLNLLWKKAQV-RLSEPKLK 70 (175)
Q Consensus 49 R~~KLN~LWeKAq~-~fs~~eL~ 70 (175)
.+.|+|.|-.|++. +||++|..
T Consensus 6 ~i~RINeLakK~K~~gLT~eEk~ 28 (60)
T 3bhp_A 6 KIARINELAAKAKAGVITEEEKA 28 (60)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHH
T ss_pred HHHHHHHHHHHHhccCCCHHHHH
Confidence 36789999999999 99986544
No 12
>2jvd_A UPF0291 protein YNZC; solution structure, construct optimization, cytoplasm, structural genomics, unknown function, PSI-2; NMR {Bacillus subtilis}
Probab=42.05 E-value=24 Score=23.39 Aligned_cols=21 Identities=24% Similarity=0.226 Sum_probs=18.7
Q ss_pred hhHHHHHHHHHhCCCCHHHHH
Q psy9493 149 KKLNKLWEKAEHSGFTCKNVK 169 (175)
Q Consensus 149 pKl~kLW~kA~~sgFS~eEL~ 169 (175)
.|+|.|=.++++.|+|++|..
T Consensus 8 ~RINeLakK~K~~gLT~eEk~ 28 (54)
T 2jvd_A 8 ARINELAAKAKAGVITEEEKA 28 (54)
T ss_dssp HHHHHHHHHHHHTCCCHHHHH
T ss_pred HHHHHHHHHHhccCCCHHHHH
Confidence 388999999999999999865
No 13
>3bhp_A UPF0291 protein YNZC; NESG, SR384, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.01A {Bacillus subtilis}
Probab=40.89 E-value=25 Score=23.74 Aligned_cols=21 Identities=24% Similarity=0.226 Sum_probs=18.7
Q ss_pred hhHHHHHHHHHhCCCCHHHHH
Q psy9493 149 KKLNKLWEKAEHSGFTCKNVK 169 (175)
Q Consensus 149 pKl~kLW~kA~~sgFS~eEL~ 169 (175)
.|.|.|=+++++.|+|++|..
T Consensus 8 ~RINeLakK~K~~gLT~eEk~ 28 (60)
T 3bhp_A 8 ARINELAAKAKAGVITEEEKA 28 (60)
T ss_dssp HHHHHHHHHHHHTCCCHHHHH
T ss_pred HHHHHHHHHHhccCCCHHHHH
Confidence 378999999999999999865
No 14
>2hep_A UPF0291 protein YNZC; SR384, structure, autostructure, northeast structural genomics consortium, PSI-1, protein structure initiative, NESG; NMR {Bacillus subtilis} SCOP: a.2.21.1
Probab=40.32 E-value=21 Score=25.65 Aligned_cols=22 Identities=23% Similarity=0.357 Sum_probs=18.4
Q ss_pred chhhhHHHHHHHHc-cCCHHHHH
Q psy9493 49 RMGKLNLLWKKAQV-RLSEPKLK 70 (175)
Q Consensus 49 R~~KLN~LWeKAq~-~fs~~eL~ 70 (175)
.+.|+|.|-.|++. +||++|..
T Consensus 6 ~i~RINeLakK~K~~GLT~eEk~ 28 (85)
T 2hep_A 6 KIARINELAAKAKAGVITEEEKA 28 (85)
T ss_dssp HHHHHHHHHHHHHHHCCCHHHHH
T ss_pred HHHHHHHHHHHHhccCCCHHHHH
Confidence 46799999999999 99996544
No 15
>2ki0_A DS119; beta-alpha-beta, de novo protein; NMR {Synthetic}
Probab=28.43 E-value=26 Score=21.04 Aligned_cols=13 Identities=31% Similarity=0.199 Sum_probs=11.1
Q ss_pred CCCHHHHHHHhhh
Q psy9493 162 GFTCKNVKFNNQE 174 (175)
Q Consensus 162 gFS~eEL~sLk~E 174 (175)
|=|++||..|++|
T Consensus 11 ggtpeelkklkee 23 (36)
T 2ki0_A 11 GGTPEELKKLKEE 23 (36)
T ss_dssp CCCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHH
Confidence 4589999999987
No 16
>2hep_A UPF0291 protein YNZC; SR384, structure, autostructure, northeast structural genomics consortium, PSI-1, protein structure initiative, NESG; NMR {Bacillus subtilis} SCOP: a.2.21.1
Probab=26.64 E-value=40 Score=24.19 Aligned_cols=21 Identities=24% Similarity=0.226 Sum_probs=18.7
Q ss_pred hhHHHHHHHHHhCCCCHHHHH
Q psy9493 149 KKLNKLWEKAEHSGFTCKNVK 169 (175)
Q Consensus 149 pKl~kLW~kA~~sgFS~eEL~ 169 (175)
.|.|-|=+++++.|+|++|..
T Consensus 8 ~RINeLakK~K~~GLT~eEk~ 28 (85)
T 2hep_A 8 ARINELAAKAKAGVITEEEKA 28 (85)
T ss_dssp HHHHHHHHHHHHHCCCHHHHH
T ss_pred HHHHHHHHHHhccCCCHHHHH
Confidence 388999999999999999865
No 17
>3q4o_A Uncharacterized protein MJ0754; ferritin-like protein, four-helix bundle, metal binding, DIN center, unknown function; HET: B3P; 1.34A {Methanocaldococcus jannaschii} PDB: 3q4q_A* 3q4r_A* 3q4n_A
Probab=22.68 E-value=1e+02 Score=25.04 Aligned_cols=42 Identities=17% Similarity=0.306 Sum_probs=29.1
Q ss_pred HHHHHHHhhccccccchhhccccccccCCCCCCCCCCCCCCChhHHHHHHHHHhCC-CCH
Q psy9493 107 RLVGIMSTYGLLEHFEDIQGEKIKLDTDDNAPVHKPRAVFKDKKLNKLWEKAEHSG-FTC 165 (175)
Q Consensus 107 kl~~Il~kYgL~~~~~~~~~~~~~~h~~l~d~~~~~~~~F~DpKl~kLW~kA~~sg-FS~ 165 (175)
.+..++++||+..- . .......|.+|.||+|-..+...| -|.
T Consensus 71 al~~Ll~rYgl~~P-------------~----~~~~~G~f~~p~lq~LY~~L~e~G~~S~ 113 (196)
T 3q4o_A 71 AVKYLLEKYNIPDP-------------V----KNDSIGVFSNPKFEELYKKLVEKGDKSE 113 (196)
T ss_dssp HHHHHHHHTTCCCS-------------C----SCCSTTCCSSHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHhCCCCC-------------C----CCCCCCeeccHhHHHHHHHHHHHhhhhH
Confidence 56677777777621 0 123456799999999999888777 554
No 18
>1e0g_A Membrane-bound lytic murein transglycosylase D; cell WALL, hydrolase, glycosidase, lipoprotein, outer membrane, multigene family; NMR {Escherichia coli} SCOP: d.7.1.1
Probab=22.62 E-value=52 Score=19.04 Aligned_cols=19 Identities=26% Similarity=0.170 Sum_probs=16.2
Q ss_pred HHHHHHHhCCCCHHHHHHH
Q psy9493 153 KLWEKAEHSGFTCKNVKFN 171 (175)
Q Consensus 153 kLW~kA~~sgFS~eEL~sL 171 (175)
-||..|+.-|.+..+|..+
T Consensus 12 tl~~Ia~~~~~~~~~l~~~ 30 (48)
T 1e0g_A 12 SLSSIAKRHGVNIKDVMRW 30 (48)
T ss_dssp CHHHHHHHHTCCHHHHHHH
T ss_pred cHHHHHHHHCcCHHHHHHh
Confidence 3999999999999888764
Done!