RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy9493
(175 letters)
>gnl|CDD|148168 pfam06400, Alpha-2-MRAP_N, Alpha-2-macroglobulin RAP, N-terminal
domain. The alpha-2-macroglobulin receptor-associated
protein (RAP) is a intracellular glycoprotein that binds
to the 2-macroglobulin receptor and other members of the
low density lipoprotein receptor family. The protein
inhibits binding of all currently known ligands of these
receptors. The N-terminal domain is predominately alpha
helical. Two different studies have provided conflicted
domain boundaries.
Length = 121
Score = 106 bits (267), Expect = 2e-30
Identities = 53/120 (44%), Positives = 77/120 (64%), Gaps = 12/120 (10%)
Query: 1 MKILCVFALLYTVAVSSE-NIYSRESNVRFKSQLDVEP-NIQLRHLDNPFRMGKLNLLWK 58
+ +L + LL +A + YSRE+N EP R+ FRM KLN +W+
Sbjct: 1 LALLLLLLLLAVLAAAKHAGKYSREAN---------EPYAPDKRNSQREFRMAKLNQVWE 51
Query: 59 KAQ-VRLSEPKLKSIYNELKIHDKEEILFKKVKADGLDPDGQREGILRKRLVGIMSTYGL 117
KAQ +RLSE KLK ++++LKI +K+E+ +KK+KA+GLD DG++E LR++L IMS YGL
Sbjct: 52 KAQRLRLSEVKLKELHSDLKIQEKDELAWKKLKAEGLDKDGEKEAKLRRKLNVIMSKYGL 111
>gnl|CDD|148169 pfam06401, Alpha-2-MRAP_C, Alpha-2-macroglobulin RAP, C-terminal
domain. The alpha-2-macroglobulin receptor-associated
protein (RAP) is a intracellular glycoprotein that binds
to the 2-macroglobulin receptor and other members of the
low density lipoprotein receptor family. The protein
inhibits binding of all currently known ligands of these
receptors. Two different studies have provided
conflicted domain boundaries.
Length = 205
Score = 34.7 bits (80), Expect = 0.011
Identities = 17/31 (54%), Positives = 21/31 (67%), Gaps = 6/31 (19%)
Query: 145 VFKDKKLNKLWEKAEHSGFTCKNVKFNNQEL 175
+FKD KLNKLW KA+ SG KF+ +EL
Sbjct: 2 LFKDPKLNKLWNKAKTSG------KFSKEEL 26
>gnl|CDD|239397 cd03123, alpha_CA_VI_IX_XII_XIV, Carbonic anhydrase alpha, isozymes
VI, IX, XII and XIV. Carbonic anhydrases (CAs) are
zinc-containing enzymes that catalyze the reversible
hydration of carbon dioxide in a two-step mechanism: a
nucleophilic attack of a zinc-bound hydroxide ion on
carbon dioxide, followed by the regeneration of the
active site by ionization of the zinc-bound water
molecule and removal of a proton from the active site.
They are ubiquitous enzymes involved in fundamental
processes like photosynthesis, respiration, pH
homeostasis and ion transport. There are three
evolutionary distinct groups - alpha, beta and gamma
carbonic anhydrases - which show no significant sequence
identity or structural similarity. Alpha CAs are mostly
monomeric enzymes. The zinc ion is complexed by three
histidine residues. This sub-family comprises the
secreted CA VI, which is found in saliva, for example,
and the membrane proteins CA IX, XII, and XIV.
Length = 248
Score = 28.8 bits (65), Expect = 1.2
Identities = 25/101 (24%), Positives = 42/101 (41%), Gaps = 21/101 (20%)
Query: 4 LCVFALLYTVAVSSENIY-----SRESNVRFKSQLDVEPNIQLRHL-----DNPFRM-GK 52
L V A+L V EN Y S +++K Q P +R L + +R G
Sbjct: 130 LAVLAILIEVG-YPENTYYEKIISHLHEIKYKGQETTVPGFNVRELLPEDLSHYYRYEGS 188
Query: 53 L-------NLLWK--KAQVRLSEPKLKSIYNELKIHDKEEI 84
L ++LW + V LS+ +L+++ N L + +
Sbjct: 189 LTTPPCYESVLWTVFRDPVTLSKEQLETLENTLMDTHNKTL 229
>gnl|CDD|129321 TIGR00217, malQ, 4-alpha-glucanotransferase. This enzyme is known
as amylomaltase and disproportionating enzyme [Energy
metabolism, Biosynthesis and degradation of
polysaccharides].
Length = 513
Score = 28.7 bits (64), Expect = 1.8
Identities = 11/45 (24%), Positives = 18/45 (40%), Gaps = 4/45 (8%)
Query: 42 RHLDNPFRMGKLNLLWKKAQVRLSEPKLKSIYNELKIHDKEEILF 86
+ +LW K + +EP+L + N L +EI F
Sbjct: 162 KEAFFKESKNAGWVLWDKGIQKRNEPELFKLRNIL----SKEIKF 202
>gnl|CDD|180820 PRK07064, PRK07064, hypothetical protein; Provisional.
Length = 544
Score = 27.3 bits (61), Expect = 4.5
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 123 DIQGEKIKLDTDDNAPVHKPRAVFKDKKLNKLWEK 157
DIQ +I+L DD APVH + +L E+
Sbjct: 166 DIQAAEIELP-DDLAPVHVAVPEPDAAAVAELAER 199
>gnl|CDD|239864 cd04399, RhoGAP_fRGD2, RhoGAP_fRGD2: RhoGAP (GTPase-activator
protein [GAP] for Rho-like small GTPases) domain of
fungal RGD2-like proteins. Yeast Rgd2 is a GAP protein
for Cdc42 and Rho5. Small GTPases cluster into distinct
families, and all act as molecular switches, active in
their GTP-bound form but inactive when GDP-bound. The
Rho family of GTPases activates effectors involved in a
wide variety of developmental processes, including
regulation of cytoskeleton formation, cell
proliferation and the JNK signaling pathway. GTPases
generally have a low intrinsic GTPase hydrolytic
activity but there are family-specific groups of GAPs
that enhance the rate of GTP hydrolysis by several
orders of magnitude.
Length = 212
Score = 26.1 bits (58), Expect = 9.8
Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 62 VRLSEP-KLKSIYNELKIHDKEEILFKKVKA 91
V L E +L+++ N+ K DKE I+ KK +
Sbjct: 48 VSLKETHQLRNLLNKPKKPDKEVIILKKFEP 78
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.137 0.396
Gapped
Lambda K H
0.267 0.0629 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 8,878,723
Number of extensions: 827378
Number of successful extensions: 652
Number of sequences better than 10.0: 1
Number of HSP's gapped: 651
Number of HSP's successfully gapped: 22
Length of query: 175
Length of database: 10,937,602
Length adjustment: 90
Effective length of query: 85
Effective length of database: 6,945,742
Effective search space: 590388070
Effective search space used: 590388070
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.6 bits)