RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9493
(175 letters)
>2p01_A Alpha-2-macroglobulin receptor-associated protein; RAP, cell
adhesion; NMR {Homo sapiens} PDB: 2p03_A
Length = 323
Score = 112 bits (282), Expect = 9e-31
Identities = 54/156 (34%), Positives = 77/156 (49%), Gaps = 22/156 (14%)
Query: 21 YSRESNVRFKSQLDVEPNIQLRHLDNPFRMGKLNLLWKKAQ-VRLSEPKLKSIYNELKIH 79
YSRE N R FRM KLN LW+KAQ + L +L ++ +LKI
Sbjct: 1 YSREKNQ--------PKPSPKRESGEEFRMEKLNQLWEKAQRLHLPPVRLAELHADLKIQ 52
Query: 80 DKEEILFKKVKADGLDPDGQREGILRKRLVGIMSTYGLLEHFEDIQGEKIKLDTDDNAPV 139
+++E+ +KK+K DGLD DG++E L + L I++ YGL + Q N+
Sbjct: 53 ERDELAWKKLKLDGLDEDGEKEARLIRNLNVILAKYGLDGKKDARQVT-------SNSLS 105
Query: 140 HKPRAVFKDKKLNKLWEKAEHSGFTCKNVKFNNQEL 175
D +L KLW KA+ SG KF+ +EL
Sbjct: 106 GTQEDGLDDPRLEKLWHKAKTSG------KFSGEEL 135
Score = 33.9 bits (77), Expect = 0.016
Identities = 26/140 (18%), Positives = 51/140 (36%), Gaps = 10/140 (7%)
Query: 45 DNPFRMGKLNLLWKKAQV--RLSEPKLKSIYNELKIH-DKEEILFKKVKADGLDPDGQRE 101
++ +L LW KA+ + S +L ++ E H +K ++ +
Sbjct: 109 EDGLDDPRLEKLWHKAKTSGKFSGEELDKLWREFLHHKEKVHEYNVLLETLSRTEEIHEN 168
Query: 102 GILRKRLVGIMSTY------GLLEHFEDIQGEKIKLDTDDNAPVHKPRAVFKDKKLNKLW 155
I L I + L E I +L + A F++ ++ LW
Sbjct: 169 VISPSDLSDIKGSVLHSRHTELKEKLRSINQGLDRLRRVSHQGYST-EAEFEEPRVIDLW 227
Query: 156 EKAEHSGFTCKNVKFNNQEL 175
+ A+ + T K ++ +EL
Sbjct: 228 DLAQSANLTDKELEAFREEL 247
>1ov2_A Alpha-2-macroglobulin receptor-associated protein precursor;
helical protein; NMR {Homo sapiens} SCOP: a.13.1.1
Length = 99
Score = 103 bits (259), Expect = 8e-30
Identities = 40/106 (37%), Positives = 58/106 (54%), Gaps = 9/106 (8%)
Query: 21 YSRESNVRFKSQLDVEPNIQLRHLDNPFRMGKLNLLWKKAQ-VRLSEPKLKSIYNELKIH 79
YSRE N R FRM KLN LW+KAQ + L +L ++ +LKI
Sbjct: 1 YSREKNQ--------PKPSPKRESGEEFRMEKLNQLWEKAQRLHLPPVRLAELHADLKIQ 52
Query: 80 DKEEILFKKVKADGLDPDGQREGILRKRLVGIMSTYGLLEHFEDIQ 125
+++E+ +KK+K DGLD DG++E L + L I++ YGL + Q
Sbjct: 53 ERDELAWKKLKLDGLDEDGEKEARLIRNLNVILAKYGLDGKKDARQ 98
>1lre_A Receptor-associated protein; low density lipoprotein receptor
family associated protein, LDLR family associated
protein, helix bundle; NMR {Homo sapiens} SCOP: a.13.1.1
PDB: 1nre_A 2fyl_A 1op1_A
Length = 81
Score = 93.9 bits (233), Expect = 5e-26
Identities = 33/76 (43%), Positives = 51/76 (67%), Gaps = 1/76 (1%)
Query: 48 FRMGKLNLLWKKAQ-VRLSEPKLKSIYNELKIHDKEEILFKKVKADGLDPDGQREGILRK 106
FRM KLN LW+KAQ + L +L ++ +LKI +++E+ +KK+K DGLD DG++E L +
Sbjct: 4 FRMEKLNQLWEKAQRLHLPPVRLAELHADLKIQERDELAWKKLKLDGLDEDGEKEARLIR 63
Query: 107 RLVGIMSTYGLLEHFE 122
L I++ YGL +
Sbjct: 64 NLNVILAKYGLDGKKD 79
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 28.5 bits (63), Expect = 1.3
Identities = 36/236 (15%), Positives = 75/236 (31%), Gaps = 91/236 (38%)
Query: 10 LYTVAVSSENIYSR-----ESNVRFKSQLDVEPNIQLRHLDNPFRMGKLNLLWKKAQVRL 64
LY + +++++++R + F S LD+ ++NP + K ++R
Sbjct: 1635 LYKTSKAAQDVWNRADNHFKDTYGF-SILDI-------VINNPVNLTIHFGGEKGKRIRE 1686
Query: 65 ------------SEPKLKSIYNELKI--------HDKEEI----------------LFKK 88
+ K + I+ E+ +K + F+
Sbjct: 1687 NYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFED 1746
Query: 89 VKADGLDPD---------GQRE--------GIL---------RKRLVGIMSTYGLLEHFE 122
+K+ GL P G E ++ R G+
Sbjct: 1747 LKSKGLIPADATFAGHSLG--EYAALASLADVMSIESLVEVVFYR--------GMTMQVA 1796
Query: 123 DIQGEKIKLDTDDNA--PVHKPRAVFKDKKLNKLWEK-AEHSGFTCKNVKFN--NQ 173
+ E + + A P + A F + L + E+ + +G+ + V +N NQ
Sbjct: 1797 VPRDELGRSNYGMIAINP-GRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQ 1851
>1jqg_A Carboxypeptidase A; Pro-protein, hydrolase; 2.50A {Helicoverpa
armigera} SCOP: c.56.5.1 d.58.3.1
Length = 433
Score = 28.3 bits (63), Expect = 1.3
Identities = 13/82 (15%), Positives = 28/82 (34%), Gaps = 3/82 (3%)
Query: 1 MKILCVFALLYTVAVSSENIYSRESNVRFKSQLDVEPNIQLRHL--DNPFRMGKLNLLWK 58
MK L +F L ++ IY + + + + + D + + +
Sbjct: 1 MKYLFIFCLFVAGVLAKHEIYDGHAVYQVDVASMDQVKL-VHDFENDLMLDVWSDAVPGR 59
Query: 59 KAQVRLSEPKLKSIYNELKIHD 80
+V + + K + N LK
Sbjct: 60 PGKVLVPKFKREIFENFLKQSG 81
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.0 bits (61), Expect = 1.3
Identities = 7/20 (35%), Positives = 12/20 (60%), Gaps = 1/20 (5%)
Query: 119 EHFEDIQGEKIKLDTDDNAP 138
+ + +Q +KL DD+AP
Sbjct: 20 QALKKLQA-SLKLYADDSAP 38
Score = 25.3 bits (54), Expect = 8.3
Identities = 9/36 (25%), Positives = 17/36 (47%), Gaps = 11/36 (30%)
Query: 58 KKAQVRLSEPKLKSIYNELKIH--DKEEILFKKVKA 91
+K ++ KL++ LK++ D L +KA
Sbjct: 18 EKQALK----KLQA---SLKLYADDSAPAL--AIKA 44
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 27.5 bits (60), Expect = 3.1
Identities = 15/65 (23%), Positives = 24/65 (36%), Gaps = 11/65 (16%)
Query: 38 NIQLRHLDNPFRMGKLNLLWKKAQVRLSEPKLK---SIYNELK--------IHDKEEILF 86
NI+ FRM L+ + + ++R SI N L+ I D +
Sbjct: 483 NIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYE 542
Query: 87 KKVKA 91
+ V A
Sbjct: 543 RLVNA 547
>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like,
C-terminal domain, reduced form at PH7, oxidoreductase;
0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A
2fwf_A 2fwg_A 1vrs_D 1uc7_A
Length = 134
Score = 26.3 bits (58), Expect = 3.3
Identities = 9/37 (24%), Positives = 11/37 (29%), Gaps = 2/37 (5%)
Query: 94 LDPDGQREGILRKRLVGIMSTYGLLEHFEDIQGEKIK 130
D GQ + R+ G M H D Q
Sbjct: 98 FDGQGQE--HPQARVTGFMDAETFSAHLRDRQPHHHH 132
>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET:
MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB:
1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A
3c73_A
Length = 151
Score = 25.7 bits (57), Expect = 6.2
Identities = 14/95 (14%), Positives = 31/95 (32%), Gaps = 33/95 (34%)
Query: 67 PKLKSIYNELK----------IHDKEEILFKKVKADGL------DPDGQ----------- 99
P + + Y K + + + + +K+ G+ D D Q
Sbjct: 46 PYMANQYKHFKSQGVEIVAVNVGESKIAVHNFMKSYGVNFPVVLDTDRQVLDAYDVSPLP 105
Query: 100 ------REGILRKRLVGIMSTYGLLEHFEDIQGEK 128
EG + K + G M+ + ++ I+ +
Sbjct: 106 TTFLINPEGKVVKVVTGTMTESMIHDYMNLIKPGE 140
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.137 0.396
Gapped
Lambda K H
0.267 0.0604 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,606,754
Number of extensions: 149701
Number of successful extensions: 305
Number of sequences better than 10.0: 1
Number of HSP's gapped: 298
Number of HSP's successfully gapped: 19
Length of query: 175
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 88
Effective length of database: 4,272,666
Effective search space: 375994608
Effective search space used: 375994608
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (24.9 bits)