Query psy9494
Match_columns 314
No_of_seqs 267 out of 1708
Neff 6.3
Searched_HMMs 46136
Date Fri Aug 16 20:48:54 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9494.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9494hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1680|consensus 100.0 1.2E-52 2.5E-57 385.8 19.6 238 17-291 39-289 (290)
2 PRK05862 enoyl-CoA hydratase; 100.0 1.8E-51 3.9E-56 381.5 25.7 243 14-292 3-257 (257)
3 PRK08252 enoyl-CoA hydratase; 100.0 2.7E-51 5.8E-56 379.9 26.2 243 14-292 2-254 (254)
4 PRK09674 enoyl-CoA hydratase-i 100.0 3.7E-51 8E-56 379.2 25.7 242 15-292 2-255 (255)
5 PRK06563 enoyl-CoA hydratase; 100.0 3.5E-51 7.5E-56 379.2 24.8 240 17-292 1-255 (255)
6 PRK06494 enoyl-CoA hydratase; 100.0 5.7E-51 1.2E-55 378.7 25.7 244 13-292 2-259 (259)
7 PRK09245 enoyl-CoA hydratase; 100.0 5E-51 1.1E-55 380.1 25.0 242 15-292 3-266 (266)
8 PRK08140 enoyl-CoA hydratase; 100.0 7.6E-51 1.7E-55 378.1 26.0 242 14-292 3-262 (262)
9 PRK07799 enoyl-CoA hydratase; 100.0 8.8E-51 1.9E-55 378.1 26.4 243 14-292 4-263 (263)
10 PRK06142 enoyl-CoA hydratase; 100.0 5.2E-51 1.1E-55 381.3 24.9 243 13-291 4-272 (272)
11 PRK09076 enoyl-CoA hydratase; 100.0 1.1E-50 2.5E-55 376.5 25.8 241 14-291 2-257 (258)
12 PRK07658 enoyl-CoA hydratase; 100.0 1E-50 2.2E-55 376.0 25.1 241 15-292 2-257 (257)
13 TIGR02280 PaaB1 phenylacetate 100.0 1E-50 2.2E-55 376.3 25.0 239 17-292 1-256 (256)
14 PRK08258 enoyl-CoA hydratase; 100.0 1.1E-50 2.4E-55 380.3 25.5 248 10-292 10-277 (277)
15 PRK05995 enoyl-CoA hydratase; 100.0 1E-50 2.2E-55 377.2 25.0 243 13-292 2-262 (262)
16 PRK05980 enoyl-CoA hydratase; 100.0 1E-50 2.2E-55 376.9 24.7 239 15-289 3-260 (260)
17 PRK08139 enoyl-CoA hydratase; 100.0 1.5E-50 3.2E-55 377.6 25.1 245 11-292 7-266 (266)
18 PRK08150 enoyl-CoA hydratase; 100.0 2E-50 4.4E-55 374.5 25.6 239 15-291 2-254 (255)
19 PRK06144 enoyl-CoA hydratase; 100.0 1.8E-50 3.9E-55 376.1 25.3 248 9-292 2-262 (262)
20 PRK08138 enoyl-CoA hydratase; 100.0 2.1E-50 4.6E-55 375.3 25.6 245 12-292 4-261 (261)
21 PRK05809 3-hydroxybutyryl-CoA 100.0 2.4E-50 5.2E-55 374.3 25.4 244 13-292 2-260 (260)
22 PLN02664 enoyl-CoA hydratase/d 100.0 1.6E-50 3.5E-55 378.9 24.4 246 11-292 4-275 (275)
23 PRK05981 enoyl-CoA hydratase; 100.0 2.6E-50 5.7E-55 375.2 25.1 244 13-292 2-266 (266)
24 PRK06127 enoyl-CoA hydratase; 100.0 3.1E-50 6.7E-55 375.8 25.5 244 13-292 9-269 (269)
25 PLN02600 enoyl-CoA hydratase 100.0 2.6E-50 5.7E-55 372.8 24.5 235 22-292 2-251 (251)
26 PRK07657 enoyl-CoA hydratase; 100.0 4.1E-50 8.8E-55 373.0 25.6 242 15-292 3-260 (260)
27 TIGR03210 badI 2-ketocyclohexa 100.0 4.1E-50 9E-55 372.5 24.7 242 14-291 1-255 (256)
28 TIGR01929 menB naphthoate synt 100.0 3.1E-50 6.7E-55 373.9 23.8 240 15-291 2-258 (259)
29 PRK07327 enoyl-CoA hydratase; 100.0 6.3E-50 1.4E-54 373.6 25.4 243 13-291 9-267 (268)
30 PRK07396 dihydroxynaphthoic ac 100.0 6.9E-50 1.5E-54 374.3 25.7 243 13-292 11-269 (273)
31 PRK06210 enoyl-CoA hydratase; 100.0 6.1E-50 1.3E-54 373.9 24.2 244 13-292 3-272 (272)
32 PRK06495 enoyl-CoA hydratase; 100.0 8.7E-50 1.9E-54 370.4 25.0 241 12-292 1-257 (257)
33 PRK06688 enoyl-CoA hydratase; 100.0 1.1E-49 2.3E-54 369.4 25.4 243 14-292 4-259 (259)
34 PRK07659 enoyl-CoA hydratase; 100.0 6.7E-50 1.5E-54 371.7 23.8 241 14-292 5-260 (260)
35 PRK07511 enoyl-CoA hydratase; 100.0 1.1E-49 2.5E-54 369.8 25.2 240 15-290 3-259 (260)
36 PRK05864 enoyl-CoA hydratase; 100.0 1.1E-49 2.3E-54 373.5 24.6 247 10-292 4-275 (276)
37 PRK08260 enoyl-CoA hydratase; 100.0 9E-50 1.9E-54 377.5 24.3 245 14-294 3-280 (296)
38 PRK05674 gamma-carboxygeranoyl 100.0 1.3E-49 2.7E-54 371.1 24.6 242 14-292 4-264 (265)
39 PRK03580 carnitinyl-CoA dehydr 100.0 2.3E-49 5E-54 368.3 25.5 241 15-292 3-261 (261)
40 PLN02888 enoyl-CoA hydratase 100.0 3E-49 6.6E-54 368.7 25.7 244 13-292 7-264 (265)
41 PRK08259 enoyl-CoA hydratase; 100.0 2.9E-49 6.2E-54 366.6 24.7 213 14-262 2-218 (254)
42 PRK09120 p-hydroxycinnamoyl Co 100.0 3E-49 6.5E-54 370.5 24.8 217 10-262 3-229 (275)
43 PRK07468 enoyl-CoA hydratase; 100.0 2.3E-49 5.1E-54 368.5 23.7 241 14-291 3-261 (262)
44 PRK11423 methylmalonyl-CoA dec 100.0 2.6E-49 5.7E-54 368.2 23.9 243 13-292 2-261 (261)
45 PRK06143 enoyl-CoA hydratase; 100.0 4.3E-49 9.3E-54 365.9 23.7 238 12-286 3-256 (256)
46 PRK06072 enoyl-CoA hydratase; 100.0 6.4E-49 1.4E-53 363.0 24.4 236 17-292 2-248 (248)
47 PRK07509 enoyl-CoA hydratase; 100.0 1.1E-48 2.4E-53 363.4 24.9 240 13-290 1-261 (262)
48 PLN02921 naphthoate synthase 100.0 1.3E-48 2.9E-53 374.5 25.9 248 8-292 58-323 (327)
49 PRK07260 enoyl-CoA hydratase; 100.0 1.2E-48 2.7E-53 362.1 24.0 237 14-286 1-255 (255)
50 PRK12478 enoyl-CoA hydratase; 100.0 2E-48 4.3E-53 369.0 24.9 241 14-294 4-283 (298)
51 TIGR03189 dienoyl_CoA_hyt cycl 100.0 2.4E-48 5.1E-53 360.0 24.6 236 17-292 3-251 (251)
52 PRK06190 enoyl-CoA hydratase; 100.0 2.4E-48 5.1E-53 361.6 23.4 241 13-289 2-249 (258)
53 PRK06023 enoyl-CoA hydratase; 100.0 4.2E-48 9.1E-53 358.0 24.4 207 15-257 3-217 (251)
54 PRK07854 enoyl-CoA hydratase; 100.0 6E-48 1.3E-52 355.6 25.0 231 17-292 2-243 (243)
55 COG1024 CaiD Enoyl-CoA hydrata 100.0 5.7E-48 1.2E-52 357.9 25.0 239 13-289 3-257 (257)
56 PRK08321 naphthoate synthase; 100.0 8.4E-48 1.8E-52 365.3 25.3 243 14-292 22-298 (302)
57 PRK07938 enoyl-CoA hydratase; 100.0 5.6E-48 1.2E-52 357.0 23.2 228 20-287 7-249 (249)
58 PRK05870 enoyl-CoA hydratase; 100.0 3.8E-48 8.3E-53 357.9 21.4 213 14-264 2-221 (249)
59 PRK07827 enoyl-CoA hydratase; 100.0 2.6E-47 5.7E-52 354.2 24.3 238 14-290 5-259 (260)
60 PRK07110 polyketide biosynthes 100.0 5.3E-47 1.2E-51 350.4 24.6 220 12-268 2-225 (249)
61 PF00378 ECH: Enoyl-CoA hydrat 100.0 3.5E-47 7.7E-52 349.4 20.6 214 18-267 1-220 (245)
62 PRK07112 polyketide biosynthes 100.0 1.8E-46 3.9E-51 348.0 25.0 236 14-291 3-254 (255)
63 PLN03214 probable enoyl-CoA hy 100.0 1.4E-46 3E-51 353.2 23.7 240 14-290 10-269 (278)
64 PRK05617 3-hydroxyisobutyryl-C 100.0 6.4E-47 1.4E-51 365.0 20.4 241 15-292 3-326 (342)
65 PRK05869 enoyl-CoA hydratase; 100.0 2.1E-46 4.5E-51 341.4 20.7 208 14-258 2-220 (222)
66 PLN02874 3-hydroxyisobutyryl-C 100.0 9.9E-46 2.1E-50 361.1 24.1 242 14-292 10-339 (379)
67 PRK08290 enoyl-CoA hydratase; 100.0 7.1E-45 1.5E-49 343.2 24.2 210 13-260 2-239 (288)
68 PRK08272 enoyl-CoA hydratase; 100.0 6.1E-45 1.3E-49 345.4 22.9 209 12-259 7-246 (302)
69 PRK08184 benzoyl-CoA-dihydrodi 100.0 2.1E-44 4.5E-49 365.4 22.6 240 18-293 265-549 (550)
70 TIGR03222 benzo_boxC benzoyl-C 100.0 3.1E-44 6.7E-49 363.4 23.6 240 17-292 260-544 (546)
71 PLN02157 3-hydroxyisobutyryl-C 100.0 3.8E-44 8.3E-49 351.4 22.2 206 14-257 36-251 (401)
72 PRK08788 enoyl-CoA hydratase; 100.0 7.6E-44 1.6E-48 336.1 21.8 210 17-264 19-247 (287)
73 PRK06213 enoyl-CoA hydratase; 100.0 1.1E-43 2.3E-48 324.3 21.3 211 14-263 2-218 (229)
74 KOG1679|consensus 100.0 1.4E-43 3.1E-48 315.3 12.3 239 15-292 27-291 (291)
75 PRK11730 fadB multifunctional 100.0 1E-41 2.2E-46 356.1 24.1 192 16-243 7-207 (715)
76 PLN02267 enoyl-CoA hydratase/i 100.0 8.2E-42 1.8E-46 314.3 19.9 204 17-258 2-220 (239)
77 PLN02988 3-hydroxyisobutyryl-C 100.0 4.5E-41 9.8E-46 328.2 21.1 203 15-255 9-221 (381)
78 PRK11154 fadJ multifunctional 100.0 4E-40 8.7E-45 343.9 25.3 190 14-239 4-204 (708)
79 TIGR03200 dearomat_oah 6-oxocy 100.0 2.1E-40 4.5E-45 318.6 21.1 196 25-256 38-257 (360)
80 KOG1681|consensus 100.0 4.7E-41 1E-45 301.4 14.3 213 14-262 18-253 (292)
81 COG0447 MenB Dihydroxynaphthoi 100.0 2.2E-40 4.7E-45 295.2 18.5 240 12-291 15-277 (282)
82 TIGR02440 FadJ fatty oxidation 100.0 3.9E-39 8.5E-44 336.0 23.9 183 20-238 6-198 (699)
83 PLN02851 3-hydroxyisobutyryl-C 100.0 6.1E-39 1.3E-43 314.9 20.1 193 13-243 40-241 (407)
84 cd06558 crotonase-like Crotona 100.0 9.1E-39 2E-43 282.3 18.3 188 17-240 1-195 (195)
85 KOG0016|consensus 100.0 2.2E-38 4.9E-43 288.9 19.0 219 12-266 4-236 (266)
86 TIGR02437 FadB fatty oxidation 100.0 2.1E-38 4.6E-43 330.9 19.8 191 16-242 7-206 (714)
87 TIGR02441 fa_ox_alpha_mit fatt 100.0 3.4E-38 7.4E-43 330.3 19.2 196 11-242 9-227 (737)
88 TIGR03222 benzo_boxC benzoyl-C 100.0 4E-38 8.7E-43 318.9 18.8 199 12-246 8-232 (546)
89 PRK08184 benzoyl-CoA-dihydrodi 100.0 2E-37 4.3E-42 314.5 19.5 199 12-246 12-236 (550)
90 KOG1682|consensus 100.0 7.7E-36 1.7E-40 264.1 18.1 234 18-291 35-286 (287)
91 KOG1684|consensus 100.0 9.6E-29 2.1E-33 234.3 12.7 179 15-230 38-226 (401)
92 cd07014 S49_SppA Signal peptid 99.8 6.6E-20 1.4E-24 161.2 8.8 150 42-232 22-175 (177)
93 cd07020 Clp_protease_NfeD_1 No 99.8 9.7E-19 2.1E-23 155.5 12.1 164 26-232 2-172 (187)
94 cd07019 S49_SppA_1 Signal pept 99.7 4.6E-17 1E-21 147.3 11.1 186 25-231 2-208 (211)
95 cd07022 S49_Sppa_36K_type Sign 99.6 2.1E-15 4.6E-20 136.7 12.4 176 31-230 13-210 (214)
96 cd07023 S49_Sppa_N_C Signal pe 99.6 2.6E-15 5.6E-20 135.3 10.7 183 25-230 2-204 (208)
97 TIGR00705 SppA_67K signal pept 99.6 9.3E-16 2E-20 157.7 8.8 202 21-243 306-524 (584)
98 TIGR00706 SppA_dom signal pept 99.6 3E-14 6.6E-19 128.5 11.5 183 25-235 2-204 (207)
99 cd00394 Clp_protease_like Case 99.5 9.7E-14 2.1E-18 119.6 10.6 148 39-223 8-161 (161)
100 cd07018 S49_SppA_67K_type Sign 99.5 2.2E-13 4.7E-18 124.3 9.3 177 38-232 25-219 (222)
101 cd07016 S14_ClpP_1 Caseinolyti 99.4 1.6E-13 3.4E-18 118.6 6.8 129 42-223 15-160 (160)
102 PRK10949 protease 4; Provision 99.2 2E-10 4.4E-15 118.9 13.9 188 22-237 325-540 (618)
103 cd07021 Clp_protease_NfeD_like 99.2 4.6E-10 1E-14 99.4 12.8 86 38-140 9-96 (178)
104 COG0616 SppA Periplasmic serin 99.0 1.9E-09 4.1E-14 103.5 11.7 171 43-236 81-272 (317)
105 cd07015 Clp_protease_NfeD Nodu 98.8 1.2E-07 2.7E-12 83.6 12.9 154 38-230 9-170 (172)
106 PRK11778 putative inner membra 98.7 1.4E-07 3E-12 91.1 12.6 189 22-235 89-295 (330)
107 cd07013 S14_ClpP Caseinolytic 98.7 7.5E-08 1.6E-12 83.9 7.7 85 38-138 8-96 (162)
108 PF01343 Peptidase_S49: Peptid 98.5 1.1E-07 2.4E-12 82.0 4.3 129 100-236 4-150 (154)
109 TIGR00705 SppA_67K signal pept 98.4 3E-06 6.6E-11 87.7 12.3 175 43-236 77-279 (584)
110 KOG1683|consensus 98.4 2.5E-07 5.4E-12 89.5 3.5 173 24-234 66-250 (380)
111 PRK12553 ATP-dependent Clp pro 98.3 1.5E-06 3.3E-11 78.7 7.4 153 38-226 43-202 (207)
112 cd07017 S14_ClpP_2 Caseinolyti 98.3 1.5E-06 3.2E-11 76.3 6.8 149 38-223 17-171 (171)
113 PRK12319 acetyl-CoA carboxylas 98.3 4.6E-05 1E-09 71.3 17.1 137 36-226 76-214 (256)
114 PRK00277 clpP ATP-dependent Cl 98.2 3.1E-06 6.8E-11 76.3 7.3 153 37-226 38-196 (200)
115 PRK14512 ATP-dependent Clp pro 98.1 8.5E-06 1.8E-10 73.4 8.3 152 38-226 31-188 (197)
116 CHL00198 accA acetyl-CoA carbo 98.1 9.2E-05 2E-09 71.3 15.6 137 36-226 132-270 (322)
117 TIGR00513 accA acetyl-CoA carb 98.1 0.00011 2.3E-09 70.8 16.0 136 36-225 129-266 (316)
118 PRK10949 protease 4; Provision 98.1 1.8E-05 4E-10 82.4 11.1 175 43-236 96-298 (618)
119 PF00574 CLP_protease: Clp pro 98.1 2.2E-06 4.8E-11 75.5 3.5 152 38-226 24-181 (182)
120 PLN03230 acetyl-coenzyme A car 98.1 0.00014 3E-09 72.1 15.9 136 37-226 200-337 (431)
121 PRK05724 acetyl-CoA carboxylas 98.0 0.0003 6.4E-09 67.8 16.0 137 36-226 129-267 (319)
122 PF01972 SDH_sah: Serine dehyd 97.9 0.0001 2.2E-09 69.3 10.6 90 37-143 70-159 (285)
123 PLN03229 acetyl-coenzyme A car 97.9 0.00034 7.4E-09 73.3 15.4 137 36-226 220-358 (762)
124 CHL00028 clpP ATP-dependent Cl 97.9 4.9E-05 1.1E-09 68.7 7.7 149 37-227 37-197 (200)
125 TIGR00493 clpP ATP-dependent C 97.8 8.9E-05 1.9E-09 66.4 8.6 145 38-225 34-190 (191)
126 PRK12551 ATP-dependent Clp pro 97.7 0.0002 4.4E-09 64.5 9.0 147 38-227 33-191 (196)
127 PRK14514 ATP-dependent Clp pro 97.7 0.00026 5.7E-09 64.9 9.2 147 37-226 61-219 (221)
128 PRK05654 acetyl-CoA carboxylas 97.6 0.00092 2E-08 63.8 13.1 162 22-244 119-284 (292)
129 TIGR00515 accD acetyl-CoA carb 97.6 0.0015 3.3E-08 62.1 14.0 157 25-242 122-281 (285)
130 TIGR03134 malonate_gamma malon 97.5 0.0042 9.2E-08 57.6 15.6 166 23-242 31-205 (238)
131 PRK14513 ATP-dependent Clp pro 97.5 0.00055 1.2E-08 61.9 9.4 148 37-227 34-193 (201)
132 COG1030 NfeD Membrane-bound se 97.5 0.0015 3.3E-08 65.0 13.0 156 21-231 24-194 (436)
133 TIGR03133 malonate_beta malona 97.5 0.0017 3.7E-08 61.4 12.2 107 25-137 61-173 (274)
134 CHL00174 accD acetyl-CoA carbo 97.2 0.0068 1.5E-07 57.9 13.3 106 25-137 135-243 (296)
135 PRK07189 malonate decarboxylas 97.2 0.0077 1.7E-07 57.7 13.7 107 25-137 70-182 (301)
136 COG0777 AccD Acetyl-CoA carbox 97.2 0.0067 1.4E-07 57.1 12.5 159 25-244 124-285 (294)
137 TIGR01117 mmdA methylmalonyl-C 97.1 0.012 2.7E-07 60.3 14.3 99 30-136 321-426 (512)
138 COG0740 ClpP Protease subunit 97.0 0.0027 5.8E-08 57.4 8.1 84 40-139 37-124 (200)
139 PRK12552 ATP-dependent Clp pro 96.9 0.023 5E-07 52.2 13.0 96 38-140 48-147 (222)
140 PF01039 Carboxyl_trans: Carbo 96.9 0.0098 2.1E-07 60.7 11.5 107 25-136 59-166 (493)
141 TIGR01117 mmdA methylmalonyl-C 96.9 0.017 3.7E-07 59.3 13.2 102 25-133 84-185 (512)
142 PLN02820 3-methylcrotonyl-CoA 95.9 0.12 2.7E-06 53.7 12.8 107 25-135 131-239 (569)
143 COG0825 AccA Acetyl-CoA carbox 95.0 0.031 6.8E-07 53.1 4.5 81 100-226 186-266 (317)
144 COG4799 Acetyl-CoA carboxylase 94.7 0.3 6.5E-06 50.2 11.0 102 25-133 93-194 (526)
145 PLN02820 3-methylcrotonyl-CoA 92.2 4 8.7E-05 42.6 14.5 92 37-136 380-477 (569)
146 PF01039 Carboxyl_trans: Carbo 92.1 0.56 1.2E-05 47.9 8.0 101 28-136 298-405 (493)
147 COG4799 Acetyl-CoA carboxylase 81.8 24 0.00051 36.6 12.3 101 28-136 328-435 (526)
148 KOG0840|consensus 78.7 5.6 0.00012 37.5 6.1 86 37-143 99-186 (275)
149 COG0074 SucD Succinyl-CoA synt 76.3 6.9 0.00015 37.4 6.1 52 47-114 188-240 (293)
150 PLN02522 ATP citrate (pro-S)-l 72.3 10 0.00022 40.0 6.8 67 47-130 210-279 (608)
151 KOG0540|consensus 70.2 77 0.0017 32.5 12.0 103 28-136 353-459 (536)
152 PTZ00187 succinyl-CoA syntheta 67.6 15 0.00033 35.7 6.4 52 47-114 212-264 (317)
153 PF13607 Succ_CoA_lig: Succiny 67.1 14 0.00031 31.3 5.5 52 46-114 41-93 (138)
154 PF00549 Ligase_CoA: CoA-ligas 57.4 21 0.00045 31.0 4.9 58 46-115 60-121 (153)
155 PF02601 Exonuc_VII_L: Exonucl 54.8 23 0.00049 33.8 5.1 79 41-133 54-136 (319)
156 smart00250 PLEC Plectin repeat 53.7 10 0.00022 24.7 1.8 18 205-222 18-35 (38)
157 PRK05678 succinyl-CoA syntheta 50.1 40 0.00086 32.3 5.9 53 46-114 187-239 (291)
158 COG0793 Prc Periplasmic protea 48.4 20 0.00044 35.8 3.8 92 25-123 205-308 (406)
159 KOG1255|consensus 46.0 43 0.00094 31.6 5.2 60 47-118 219-278 (329)
160 PF00681 Plectin: Plectin repe 45.4 7.7 0.00017 26.4 0.2 19 204-222 17-35 (45)
161 PLN00125 Succinyl-CoA ligase [ 44.6 50 0.0011 31.8 5.7 53 46-114 192-245 (300)
162 TIGR01019 sucCoAalpha succinyl 43.8 52 0.0011 31.4 5.7 53 46-114 185-237 (286)
163 TIGR00237 xseA exodeoxyribonuc 42.9 53 0.0011 33.1 5.8 81 40-133 168-248 (432)
164 COG1570 XseA Exonuclease VII, 40.7 42 0.00091 34.1 4.6 77 42-133 176-254 (440)
165 PRK06091 membrane protein FdrA 39.1 71 0.0015 33.4 6.1 53 46-114 239-291 (555)
166 PF03464 eRF1_2: eRF1 domain 2 38.8 54 0.0012 27.2 4.4 45 25-69 25-83 (133)
167 PF13766 ECH_C: 2-enoyl-CoA Hy 32.6 1.2E+02 0.0026 24.8 5.5 62 231-292 31-103 (118)
168 COG4805 Uncharacterized protei 32.1 68 0.0015 33.5 4.6 89 202-300 276-368 (588)
169 PF06833 MdcE: Malonate decarb 31.5 73 0.0016 29.7 4.4 91 36-134 40-138 (234)
170 TIGR02717 AcCoA-syn-alpha acet 31.2 1.1E+02 0.0024 30.9 6.0 81 45-143 189-270 (447)
171 TIGR00377 ant_ant_sig anti-ant 30.9 1.5E+02 0.0033 22.7 5.6 49 16-69 4-52 (108)
172 smart00870 Asparaginase Aspara 26.5 2E+02 0.0043 27.7 6.6 31 37-67 55-85 (323)
173 COG0252 AnsB L-asparaginase/ar 26.2 2.9E+02 0.0063 27.2 7.8 37 29-67 72-108 (351)
174 COG0528 PyrH Uridylate kinase 26.1 1.9E+02 0.0041 27.1 6.0 54 13-72 4-57 (238)
175 PRK00286 xseA exodeoxyribonucl 26.0 1.3E+02 0.0028 30.0 5.5 78 41-133 175-253 (438)
176 COG3660 Predicted nucleoside-d 25.4 2.5E+02 0.0055 27.1 6.8 112 27-140 131-261 (329)
177 PLN00049 carboxyl-terminal pro 24.3 44 0.00096 33.0 1.7 94 23-123 194-300 (389)
178 PF01740 STAS: STAS domain; I 23.5 2.9E+02 0.0063 21.5 6.2 48 17-69 2-57 (117)
179 cd04241 AAK_FomA-like AAK_FomA 20.8 2E+02 0.0044 26.1 5.3 36 32-70 13-48 (252)
No 1
>KOG1680|consensus
Probab=100.00 E-value=1.2e-52 Score=385.81 Aligned_cols=238 Identities=36% Similarity=0.531 Sum_probs=208.5
Q ss_pred EEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCchh----HHH
Q psy9494 17 VCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTKL----FDD 92 (314)
Q Consensus 17 v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~----~~~ 92 (314)
.....+++|+.|+||||+++|+++..|+.||.+++..+++|+.+.++||||.|++||+|.||+++......+. ...
T Consensus 39 ~~~~~d~~I~lItlNRP~~~Nal~~~~m~eL~~A~~~~e~D~s~~viVltG~gksFcsG~Dl~e~~~~~~~~~~~~~~~~ 118 (290)
T KOG1680|consen 39 ELVGEDNGIALITLNRPKALNALCRATMLELAEAFKDFESDDSVGVIVLTGSGKSFCSGADLKEMKKDEFQDVSDGIFLR 118 (290)
T ss_pred EEeecCCCeEEEEeCChHHhccccHHHHHHHHHHHHHhhccCcccEEEEEcCCCccccccCHHHHhhccccccccccccc
Confidence 4455678999999999999999999999999999999999999999999999999999999999876433221 111
Q ss_pred HHHHHhcCCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhcccccccccccccc
Q psy9494 93 FREFLQKPAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRD 172 (314)
Q Consensus 93 ~~~~~~~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 172 (314)
....+. +.+||+||+|||+|+|||++|++.||+|||+++|+|++++.++|
T Consensus 119 ~~~~~~-~~~KPvIaainG~AlgGG~ELalmCDirva~~~Akfg~~~~~~G----------------------------- 168 (290)
T KOG1680|consen 119 VWDLVS-RLKKPVIAAINGFALGGGLELALMCDIRVAGEGAKFGFFEIRMG----------------------------- 168 (290)
T ss_pred hhhhhh-hcccceeEeeeceeeccchhhhhhcceEeccCCCeecccccccC-----------------------------
Confidence 222222 79999999999999999999999999999999999999999999
Q ss_pred cccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHHhCCHH-HHHHH
Q psy9494 173 NLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQS-MLADR 251 (314)
Q Consensus 173 ~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~~~-~~~~K 251 (314)
++|.+|++++|++.||.++|+++++||++++|+||+++||||+|+|.++++++|.+++++|++.||. ++..|
T Consensus 169 -------i~p~~GGT~rl~r~vG~s~Ale~~ltg~~~~AqeA~~~GlVn~Vvp~~~~l~eAv~l~~~Ia~~~~~~v~~~K 241 (290)
T KOG1680|consen 169 -------IIPSWGGTQRLPRIVGKSRALEMILTGRRLGAQEAKKIGLVNKVVPSGDALGEAVKLAEQIAKNSPLVVRADK 241 (290)
T ss_pred -------CccCCCchhhHHHHhChHHHHHHHHhcCcccHHHHHhCCceeEeecchhHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 8889999999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHhhhhchHHHHHHHHHHHHhhhH--------HHHHHhcCCCCCCC
Q psy9494 252 ATVLSECETCREEWMSERKHYIGISF--------ELKFLQKKKKAKNG 291 (314)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~af~ekr~p~~~~ 291 (314)
+.++...+....+.+..+.......+ ..+|.+||+|.|+.
T Consensus 242 ~svn~~~e~~l~e~l~~e~~~~~s~~~~~d~~Eg~~~f~~kr~~~~~k 289 (290)
T KOG1680|consen 242 ESVNAAYETTLFEGLELERDLFGSTFATEDRLEGMTAFAEKRKPKFSK 289 (290)
T ss_pred HHHHHHhhccHHHHHHhhhhhhhhhhhhHHHHHHHHHhcccCCccccc
Confidence 99999877776655544433222222 26999999999975
No 2
>PRK05862 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.8e-51 Score=381.50 Aligned_cols=243 Identities=25% Similarity=0.378 Sum_probs=207.8
Q ss_pred cccEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCch-hHHH
Q psy9494 14 VSSVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTK-LFDD 92 (314)
Q Consensus 14 ~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~-~~~~ 92 (314)
++.+.++++++|++||||||++.|++|.+|+++|.+++++++.|+++|+|||||.|++||+|+|++++......+ ....
T Consensus 3 ~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~ 82 (257)
T PRK05862 3 YETILVETRGRVGLITLNRPKALNALNDALMDELGAALAAFDADEGIGAIVITGSEKAFAAGADIKEMADLSFMDVYKGD 82 (257)
T ss_pred CceEEEEeeCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCeeEEEEECCCCceECCcChHhHhccchhHHHHHH
Confidence 456888999999999999999999999999999999999999999999999999999999999999875432211 1122
Q ss_pred HHHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhcccccccccccc
Q psy9494 93 FREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSL 170 (314)
Q Consensus 93 ~~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~~~~~ 170 (314)
+...+.+ .+||||||+|||+|+|||++|+++||+|||+++++|++||+++|
T Consensus 83 ~~~~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G--------------------------- 135 (257)
T PRK05862 83 YITNWEKVARIRKPVIAAVAGYALGGGCELAMMCDIIIAADTAKFGQPEIKLG--------------------------- 135 (257)
T ss_pred HHHHHHHHHhCCCCEEEEEccEEeHHHHHHHHHCCEEEEeCCCEEeCchhccC---------------------------
Confidence 2223332 89999999999999999999999999999999999999999999
Q ss_pred cccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHHhCCHH-HHH
Q psy9494 171 RDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQS-MLA 249 (314)
Q Consensus 171 ~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~~~-~~~ 249 (314)
+.|++|++++|++++|+.+|++++++|+.++|+||+++||||+++|++++.+++.+++++|++.+|. ++.
T Consensus 136 ---------l~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~~ 206 (257)
T PRK05862 136 ---------VLPGMGGSQRLTRAVGKAKAMDLCLTGRMMDAAEAERAGLVSRVVPADKLLDEALAAATTIASFSLPAVMM 206 (257)
T ss_pred ---------cCCCccHHHHHHHHhCHHHHHHHHHhCCccCHHHHHHcCCCCEeeCHhHHHHHHHHHHHHHHhCCHHHHHH
Confidence 7778899999999999999999999999999999999999999999999999999999999999999 999
Q ss_pred HHHHHHhhhhchHHHHHHHHHHHHhh--------hHHHHHHhcCCCCCCCC
Q psy9494 250 DRATVLSECETCREEWMSERKHYIGI--------SFELKFLQKKKKAKNGH 292 (314)
Q Consensus 250 ~K~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~af~ekr~p~~~~~ 292 (314)
+|+.++........+....+...... ....+|++||+|.|+|+
T Consensus 207 ~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~~~~e~i~af~~kr~p~~~~~ 257 (257)
T PRK05862 207 AKEAVNRAYETTLAEGLLFERRLFHSLFATEDQKEGMAAFVEKRKPVFKHR 257 (257)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhccCCCCCCCC
Confidence 99999876554444333322211111 11279999999999874
No 3
>PRK08252 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.7e-51 Score=379.93 Aligned_cols=243 Identities=24% Similarity=0.423 Sum_probs=206.7
Q ss_pred cccEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCchh-HHH
Q psy9494 14 VSSVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTKL-FDD 92 (314)
Q Consensus 14 ~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~-~~~ 92 (314)
.+.|.++++++|++|+||||++.|++|.+|+++|.+++++++.|+++|+|||||.|++||+|+|++++........ ...
T Consensus 2 ~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~ 81 (254)
T PRK08252 2 SDEVLVERRGRVLIITINRPEARNAVNAAVAQGLAAALDELDADPDLSVGILTGAGGTFCAGMDLKAFARGERPSIPGRG 81 (254)
T ss_pred CceEEEEEECCEEEEEECCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCceEcCcCHHHHhcccchhhhHHH
Confidence 3568889999999999999999999999999999999999999999999999999999999999998754322111 112
Q ss_pred HHHHHhcCCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhcccccccccccccc
Q psy9494 93 FREFLQKPAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRD 172 (314)
Q Consensus 93 ~~~~~~~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 172 (314)
+.......+||||||+|||+|+|||++|+++||+|||+++++|++||+++|
T Consensus 82 ~~~~~~~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G----------------------------- 132 (254)
T PRK08252 82 FGGLTERPPRKPLIAAVEGYALAGGFELALACDLIVAARDAKFGLPEVKRG----------------------------- 132 (254)
T ss_pred HHHHHHhcCCCCEEEEECCEEehHHHHHHHhCCEEEEeCCCEEeCchhhcC-----------------------------
Confidence 222232379999999999999999999999999999999999999999999
Q ss_pred cccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHHhCCHH-HHHHH
Q psy9494 173 NLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQS-MLADR 251 (314)
Q Consensus 173 ~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~~~-~~~~K 251 (314)
+.|++|++++|++++|..+|++++++|++++|+||+++||||+++|++++++++.++++++++.||. ++.+|
T Consensus 133 -------l~p~~g~~~~l~~~vg~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~~~K 205 (254)
T PRK08252 133 -------LVAAGGGLLRLPRRIPYHIAMELALTGDMLTAERAHELGLVNRLTEPGQALDAALELAERIAANGPLAVAASK 205 (254)
T ss_pred -------CCCCchHHHHHHHHcCHHHHHHHHHcCCccCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 7778899999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHhhhhchHHHHHHHHHHHHhh--------hHHHHHHhcCCCCCCCC
Q psy9494 252 ATVLSECETCREEWMSERKHYIGI--------SFELKFLQKKKKAKNGH 292 (314)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~af~ekr~p~~~~~ 292 (314)
+.++........+....+...... ....+|++||+|.|+++
T Consensus 206 ~~l~~~~~~~l~~~~~~e~~~~~~~~~~~~~~eg~~af~~kr~p~~~~~ 254 (254)
T PRK08252 206 RIVVESGDWSEDEMFARQRELIAPVFTSADAKEGATAFAEKRAPVWTGK 254 (254)
T ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhcCCCCCCCCC
Confidence 999876544333322222111111 11269999999999864
No 4
>PRK09674 enoyl-CoA hydratase-isomerase; Provisional
Probab=100.00 E-value=3.7e-51 Score=379.19 Aligned_cols=242 Identities=26% Similarity=0.370 Sum_probs=206.2
Q ss_pred ccEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCch-hHHHH
Q psy9494 15 SSVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTK-LFDDF 93 (314)
Q Consensus 15 ~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~-~~~~~ 93 (314)
+.|.++++++|++||||||++.|++|.+|+.+|.++++++++|+++|+|||||.|++||+|+|++++....... .....
T Consensus 2 ~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~~~~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~ 81 (255)
T PRK09674 2 SELLVSRQQRVLLLTLNRPEARNALNNALLTQLVNELEAAATDTSIGVCVITGNARFFAAGADLNEMAEKDLAATLNDPR 81 (255)
T ss_pred ceEEEEeECCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCceecccChHhHhccchhhhHHHHH
Confidence 56888999999999999999999999999999999999999999999999999999999999999875422111 11112
Q ss_pred HHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhccccccccccccc
Q psy9494 94 REFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLR 171 (314)
Q Consensus 94 ~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 171 (314)
.+++.. .+||||||+|||+|+|||++|+++||+|||+++++|++||+++|
T Consensus 82 ~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G---------------------------- 133 (255)
T PRK09674 82 PQLWQRLQAFNKPLIAAVNGYALGAGCELALLCDIVIAGENARFGLPEITLG---------------------------- 133 (255)
T ss_pred HHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEecCCCEEeCchhhcC----------------------------
Confidence 223332 89999999999999999999999999999999999999999999
Q ss_pred ccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHHhCCHH-HHHH
Q psy9494 172 DNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQS-MLAD 250 (314)
Q Consensus 172 ~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~~~-~~~~ 250 (314)
+.|++|++++|++++|+.+|++++++|+.++|+||+++||||+++|++++.+++.+++++|+..||. ++.+
T Consensus 134 --------l~p~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~~~~a~~~a~~l~~~~~~a~~~~ 205 (255)
T PRK09674 134 --------IMPGAGGTQRLIRSVGKSLASQMVLTGESITAQQAQQAGLVSEVFPPELTLERALQLASKIARHSPLALRAA 205 (255)
T ss_pred --------CCCCccHHHHHHHHhCHHHHHHHHHcCCccCHHHHHHcCCCcEecChHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 7778899999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred HHHHHhhhhchHHHHHHHHHHHHhhh--------HHHHHHhcCCCCCCCC
Q psy9494 251 RATVLSECETCREEWMSERKHYIGIS--------FELKFLQKKKKAKNGH 292 (314)
Q Consensus 251 K~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~af~ekr~p~~~~~ 292 (314)
|+.++........+.+..+....... ...+|++||+|.|+++
T Consensus 206 K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~i~af~~kr~p~~~~~ 255 (255)
T PRK09674 206 KQALRQSQEVDLQAGLAQERQLFTLLAATEDRHEGISAFLEKRTPDFKGR 255 (255)
T ss_pred HHHHHHhhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhccCCCCCCCC
Confidence 99998765544333332221111111 1269999999999864
No 5
>PRK06563 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.5e-51 Score=379.18 Aligned_cols=240 Identities=22% Similarity=0.300 Sum_probs=202.4
Q ss_pred EEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCc---hhHHHH
Q psy9494 17 VCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDT---KLFDDF 93 (314)
Q Consensus 17 v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~---~~~~~~ 93 (314)
|.++++++|++||||||++.|++|.+|+++|.++++++++|+++|+|||||.|++||+|.|++++...... ......
T Consensus 1 ~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vrvvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~ 80 (255)
T PRK06563 1 VSRERRGHVLLIGLDRPAKRNAFDSAMLDDLALALGEYEADDELRVAVLFAHGEHFTAGLDLADVAPKLAAGGFPFPEGG 80 (255)
T ss_pred CeEEEECCEEEEEECCcccccCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCCCcCCcCHHHHhhccccchhhhhhhh
Confidence 45788999999999999999999999999999999999999999999999999999999999987542111 111111
Q ss_pred HHHHh---cCCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhcccccccccccc
Q psy9494 94 REFLQ---KPAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSL 170 (314)
Q Consensus 94 ~~~~~---~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~~~~~ 170 (314)
.+.+. .++||||||+|||+|+|||++|+++||+|||+++++|++||+++|
T Consensus 81 ~~~~~~~l~~~~kPvIAav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G--------------------------- 133 (255)
T PRK06563 81 IDPWGTVGRRLSKPLVVAVQGYCLTLGIELMLAADIVVAADNTRFAQLEVQRG--------------------------- 133 (255)
T ss_pred hHHHHHHHhcCCCCEEEEEcCeeecHHHHHHHhCCEEEecCCCEEeChhhhcC---------------------------
Confidence 11111 289999999999999999999999999999999999999999999
Q ss_pred cccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHHhCCHH-HHH
Q psy9494 171 RDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQS-MLA 249 (314)
Q Consensus 171 ~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~~~-~~~ 249 (314)
++|++|+++++++++|..+|++++++|++++|+||+++||||+++|++++.+++.+++++|++.||. ++.
T Consensus 134 ---------l~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~ 204 (255)
T PRK06563 134 ---------ILPFGGATLRFPQAAGWGNAMRYLLTGDEFDAQEALRLGLVQEVVPPGEQLERAIELAERIARAAPLGVQA 204 (255)
T ss_pred ---------CCCCccHHHHHHHHhhHHHHHHHHHcCCCcCHHHHHHcCCCcEeeCHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 7778899999999999999999999999999999999999999999999999999999999999999 999
Q ss_pred HHHHHHhhhhchHHHHHHHHHHHHhhh--------HHHHHHhcCCCCCCCC
Q psy9494 250 DRATVLSECETCREEWMSERKHYIGIS--------FELKFLQKKKKAKNGH 292 (314)
Q Consensus 250 ~K~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~af~ekr~p~~~~~ 292 (314)
+|+.++........+....+....... ...+|++||+|.|+++
T Consensus 205 ~K~~~~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~~~~~ 255 (255)
T PRK06563 205 TLASARAAVREGEAAAAAQLPPELRPLFTSEDAKEGVQAFLERRPARFKGR 255 (255)
T ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhcCCCCCCCCC
Confidence 999998765443333322221111111 1269999999999763
No 6
>PRK06494 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=5.7e-51 Score=378.73 Aligned_cols=244 Identities=29% Similarity=0.407 Sum_probs=206.7
Q ss_pred ccccEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCC-CCccccCCcccccCCCCch-hH
Q psy9494 13 LVSSVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQE-GNFCSGFDLHELDENPDTK-LF 90 (314)
Q Consensus 13 ~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~-~~ 90 (314)
.++.|.++++++|++|+||||++.|++|.+|+.+|.+++++++.|+++|+|||||.| ++||+|.|++++....... ..
T Consensus 2 ~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~ 81 (259)
T PRK06494 2 ALPFSTVERKGHVTIVTLNRPEVMNALHLDAHFELEEVFDDFAADPEQWVAIVTGAGDKAFSAGNDLKEQAAGGKRGWPE 81 (259)
T ss_pred CCceeEEEeECCEEEEEEcCccccCCCCHHHHHHHHHHHHHHhhCCCcEEEEEEcCCCCceeccccHHhHhhcCcchhhh
Confidence 456788999999999999999999999999999999999999999999999999998 7999999999875322111 11
Q ss_pred HHHHHHHhc-CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhccccccccccc
Q psy9494 91 DDFREFLQK-PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHS 169 (314)
Q Consensus 91 ~~~~~~~~~-~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~~~~ 169 (314)
..+..+... ++||||||+|||+|+|||++|+++||+|||+++++|++||+++|
T Consensus 82 ~~~~~~~~~~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G-------------------------- 135 (259)
T PRK06494 82 SGFGGLTSRFDLDKPIIAAVNGVAMGGGFELALACDLIVAAENATFALPEPRVG-------------------------- 135 (259)
T ss_pred HHHHHHHHHhcCCCCEEEEECCEEecHHHHHHHhCCEEEEeCCCEEeCcccccC--------------------------
Confidence 122222211 89999999999999999999999999999999999999999999
Q ss_pred ccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHHhCCHH-HH
Q psy9494 170 LRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQS-ML 248 (314)
Q Consensus 170 ~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~~~-~~ 248 (314)
++|++|++++|++++|+.+|++++++|++++|+||+++||||+++|++++.+++.+++++|+..||. ++
T Consensus 136 ----------l~p~~g~~~~l~~~vg~~~a~~lll~g~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~ 205 (259)
T PRK06494 136 ----------LAALAGGLHRLPRQIGLKRAMGMILTGRRVTAREGLELGFVNEVVPAGELLAAAERWADDILACSPLSIR 205 (259)
T ss_pred ----------CCCCchHHHHHHHHcCHHHHHHHHHcCCcCCHHHHHHcCCCcEecCHhHHHHHHHHHHHHHHhcCHHHHH
Confidence 7778899999999999999999999999999999999999999999999999999999999999999 99
Q ss_pred HHHHHHHhhhhchHHHHHHHHH--HHHhhh--------HHHHHHhcCCCCCCCC
Q psy9494 249 ADRATVLSECETCREEWMSERK--HYIGIS--------FELKFLQKKKKAKNGH 292 (314)
Q Consensus 249 ~~K~~~~~~~~~~~~~~~~~~~--~~~~~~--------~~~af~ekr~p~~~~~ 292 (314)
.+|+.++.......++....+. ...... ...+|++||+|.|+++
T Consensus 206 ~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~eg~~af~~kr~p~~~~~ 259 (259)
T PRK06494 206 ASKQAVYRGLEVSLEEAITAQRDYPAVEARRASQDYIEGPKAFAEKRPPRWKGR 259 (259)
T ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHccCCCCCCCC
Confidence 9999998765544443333221 111111 1269999999999874
No 7
>PRK09245 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=5e-51 Score=380.07 Aligned_cols=242 Identities=22% Similarity=0.318 Sum_probs=205.1
Q ss_pred ccEEEEEeCCEEEEEEcCCCCCCCCCH-HHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCC-----c-
Q psy9494 15 SSVCTKKILNITLISLNRPDKINAINL-KTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPD-----T- 87 (314)
Q Consensus 15 ~~v~~~~~~~v~~itlnrp~~~Nal~~-~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~-----~- 87 (314)
+.|.++++++|++||||||++.|++|. +|+++|.+++++++.|+++|+|||+|.|++||+|.|++++..... .
T Consensus 3 ~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~ 82 (266)
T PRK09245 3 DFLLVERDGHIVTLTMNRPETRNALSDNDAVDALVAACAAINADRSVRAVILTGAGTAFSSGGNVKDMRARVGAFGGSPA 82 (266)
T ss_pred CceEEEEECCEEEEEECCcccccCCChHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccCcCHHHHhhccccccccch
Confidence 468899999999999999999999995 999999999999999999999999999999999999998753211 1
Q ss_pred hhHHH----HHHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhccc
Q psy9494 88 KLFDD----FREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHV 161 (314)
Q Consensus 88 ~~~~~----~~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~ 161 (314)
..... +..++.. ++||||||+|||+|+|||++|+++||+|||+++++|++||+++|
T Consensus 83 ~~~~~~~~~~~~~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G------------------ 144 (266)
T PRK09245 83 DIRQGYRHGIQRIPLALYNLEVPVIAAVNGPAIGAGCDLACMCDIRIASETARFAESFVKLG------------------ 144 (266)
T ss_pred hHHHHHHHHHHHHHHHHHcCCCCEEEEECCEeecHHHHHHHhCCEEEecCCCEEcccccccC------------------
Confidence 11111 2222332 89999999999999999999999999999999999999999999
Q ss_pred ccccccccccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHH
Q psy9494 162 PRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMS 241 (314)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la 241 (314)
+.|++|+++++++++|..+|++++++|++++|+||+++||||+++|++++.+++.+++++|+
T Consensus 145 ------------------~~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~ 206 (266)
T PRK09245 145 ------------------LIPGDGGAWLLPRIIGMARAAEMAFTGDAIDAATALEWGLVSRVVPADQLLPAARALAERIA 206 (266)
T ss_pred ------------------cCCCcchhhhHHHHhhHHHHHHHHHcCCCcCHHHHHHcCCcceecCHHHHHHHHHHHHHHHH
Confidence 77788999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCHH-HHHHHHHHHhhhhchHHHHHHHHHHHHhh--------hHHHHHHhcCCCCCCCC
Q psy9494 242 KLSQS-MLADRATVLSECETCREEWMSERKHYIGI--------SFELKFLQKKKKAKNGH 292 (314)
Q Consensus 242 ~~~~~-~~~~K~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~af~ekr~p~~~~~ 292 (314)
+.||. ++.+|+.++.......+.....+...... ....+|++||+|.|+++
T Consensus 207 ~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~~~~~ 266 (266)
T PRK09245 207 ANPPHALRLTKRLLREGQHASLDTLLELSAAYQALAHHTADHREAVDAFLEKRPPVFTGR 266 (266)
T ss_pred hCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCHhHHHHHHHHHcCCCCCCCCC
Confidence 99999 99999999876544333332222111111 11269999999999864
No 8
>PRK08140 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=7.6e-51 Score=378.08 Aligned_cols=242 Identities=21% Similarity=0.346 Sum_probs=204.7
Q ss_pred cccEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCC---chhH
Q psy9494 14 VSSVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPD---TKLF 90 (314)
Q Consensus 14 ~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~---~~~~ 90 (314)
++.|.++++++|++||||||++.|++|.+|+.+|.+++++++ |+++|+|||||.|++||+|+|++++..... ....
T Consensus 3 ~~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~~~~~~-d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~ 81 (262)
T PRK08140 3 YETILLAIEAGVATLTLNRPDKLNSFTREMHRELREALDQVE-DDGARALLLTGAGRGFCAGQDLADRDVTPGGAMPDLG 81 (262)
T ss_pred CceEEEEeECCEEEEEecCCcccCCCCHHHHHHHHHHHHHhc-CCCceEEEEECCCCCcccCcChHHHhccccccchhhH
Confidence 567899999999999999999999999999999999999999 999999999999999999999998743211 1111
Q ss_pred HHH----HHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhcccccc
Q psy9494 91 DDF----REFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRT 164 (314)
Q Consensus 91 ~~~----~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~ 164 (314)
..+ ...+.. ++||||||+|||+|+|||++|+++||+|||+++++|++||+++|
T Consensus 82 ~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G--------------------- 140 (262)
T PRK08140 82 ESIETFYNPLVRRLRALPLPVIAAVNGVAAGAGANLALACDIVLAARSASFIQAFVKIG--------------------- 140 (262)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEECCeeehhHHHHHHhCCEEEecCCCEEeccccccC---------------------
Confidence 111 112222 89999999999999999999999999999999999999999999
Q ss_pred cccccccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHHhCC
Q psy9494 165 QLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLS 244 (314)
Q Consensus 165 ~~~~~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~ 244 (314)
+.|++|+++++++++|..+|++++++|++++|+||+++||||+++|++++.+++.+++++|++.|
T Consensus 141 ---------------~~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~ia~~~ 205 (262)
T PRK08140 141 ---------------LVPDSGGTWFLPRLVGMARALGLALLGEKLSAEQAEQWGLIWRVVDDAALADEAQQLAAHLATQP 205 (262)
T ss_pred ---------------CCCCccHHHHHHHHhCHHHHHHHHHcCCCcCHHHHHHcCCccEeeChHHHHHHHHHHHHHHHhCC
Confidence 67788899999999999999999999999999999999999999999999999999999999999
Q ss_pred HH-HHHHHHHHHhhhhchHHHHHHHHHHHHhh--------hHHHHHHhcCCCCCCCC
Q psy9494 245 QS-MLADRATVLSECETCREEWMSERKHYIGI--------SFELKFLQKKKKAKNGH 292 (314)
Q Consensus 245 ~~-~~~~K~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~af~ekr~p~~~~~ 292 (314)
|. +..+|+.++.............+...... ....+|++||+|.|.++
T Consensus 206 ~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr~p~~~~~ 262 (262)
T PRK08140 206 TRGLALIKQAMNASATNTLDAQLDLERDLQREAGRSADYAEGVSAFLEKRAPRFTGR 262 (262)
T ss_pred HHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhcCCCCCCCCC
Confidence 99 99999999876544433332222111111 11269999999999764
No 9
>PRK07799 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=8.8e-51 Score=378.06 Aligned_cols=243 Identities=23% Similarity=0.313 Sum_probs=206.8
Q ss_pred cccEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCc-hhH--
Q psy9494 14 VSSVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDT-KLF-- 90 (314)
Q Consensus 14 ~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~-~~~-- 90 (314)
++.+.++++++|++||||||+++|++|.+|+++|.+++++++.|+++|+|||||.|++||+|+|++++...... ...
T Consensus 4 ~~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~ 83 (263)
T PRK07799 4 GPHALVEQRGHTLIVTMNRPEARNALSTEMLRIMVDAWDRVDNDPDIRSCILTGAGGAFCAGMDLKAATKKPPGDSFKDG 83 (263)
T ss_pred CceEEEEEECCEEEEEECCCcccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCccccccCHHHHhhccccchhhhh
Confidence 46788999999999999999999999999999999999999999999999999999999999999987543211 101
Q ss_pred ----HHHHHHHh-cCCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhccccccc
Q psy9494 91 ----DDFREFLQ-KPAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQ 165 (314)
Q Consensus 91 ----~~~~~~~~-~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~ 165 (314)
..+..+.. ..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|
T Consensus 84 ~~~~~~~~~~~~~~~~~kpvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G---------------------- 141 (263)
T PRK07799 84 SYDPSRIDALLKGRRLTKPLIAAVEGPAIAGGTEILQGTDIRVAGESAKFGISEAKWS---------------------- 141 (263)
T ss_pred hhhhhHHHHHHHHhcCCCCEEEEECCeEeccHHHHHHhCCEEEecCCCEecCcccccC----------------------
Confidence 11111111 289999999999999999999999999999999999999999999
Q ss_pred ccccccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHHhCCH
Q psy9494 166 LKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQ 245 (314)
Q Consensus 166 ~~~~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~~ 245 (314)
++|.+|++++|++++|+.+|++++++|++++|+||+++||||+++|++++.+++.+++++|++.||
T Consensus 142 --------------l~p~~g~~~~l~r~vG~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~~~~~~ 207 (263)
T PRK07799 142 --------------LFPMGGSAVRLVRQIPYTVACDLLLTGRHITAAEAKEIGLIGHVVPDGQALDKALELAELINANGP 207 (263)
T ss_pred --------------cCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCccEecCcchHHHHHHHHHHHHHhcCh
Confidence 777889999999999999999999999999999999999999999999999999999999999999
Q ss_pred H-HHHHHHHHHhhhhchHHHHHHHHHHHHhhh--------HHHHHHhcCCCCCCCC
Q psy9494 246 S-MLADRATVLSECETCREEWMSERKHYIGIS--------FELKFLQKKKKAKNGH 292 (314)
Q Consensus 246 ~-~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~af~ekr~p~~~~~ 292 (314)
. ++.+|+.++........+....+....... ...+|++||+|.|+++
T Consensus 208 ~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~~~~egi~af~~~r~p~~~~~ 263 (263)
T PRK07799 208 LAVQAILRTIRETEGMHENEAFKIDTKIGIPVFLSEDAKEGPRAFAEKRAPNFQGR 263 (263)
T ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCccHHHHHHHHHccCCCCCCCC
Confidence 9 999999998765544443333322211111 1269999999999874
No 10
>PRK06142 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=5.2e-51 Score=381.30 Aligned_cols=243 Identities=21% Similarity=0.292 Sum_probs=205.5
Q ss_pred ccccEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCC-------
Q psy9494 13 LVSSVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENP------- 85 (314)
Q Consensus 13 ~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~------- 85 (314)
.++.|.++++++|++||||||++.|++|.+|+.+|.+++++++.|+++|+|||||.|++||+|.|++++....
T Consensus 4 ~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~ 83 (272)
T PRK06142 4 TYESFTVELADHVAQVTLNRPGKGNAMNPAFWSELPEIFRWLDADPEVRAVVLSGSGKHFSYGIDLPAMAGVFGQLGKDG 83 (272)
T ss_pred CcceEEEEecCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCceecccCHHHHhhhcccccccc
Confidence 3567999999999999999999999999999999999999999999999999999999999999999874310
Q ss_pred --C-chhH----HHHHHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhh
Q psy9494 86 --D-TKLF----DDFREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVL 156 (314)
Q Consensus 86 --~-~~~~----~~~~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~ 156 (314)
. .... ..+.+.+.. ++||||||+|||+|+|||++|+++||+|||+++++|++||+++|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~i~~~~kpvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G------------- 150 (272)
T PRK06142 84 LARPRTDLRREILRLQAAINAVADCRKPVIAAVQGWCIGGGVDLISACDMRYASADAKFSVREVDLG------------- 150 (272)
T ss_pred cccchHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccchHHHHHhCCEEEecCCCeecchhhhhC-------------
Confidence 0 0111 111222222 89999999999999999999999999999999999999999999
Q ss_pred hhcccccccccccccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCC-CchHHHHHH
Q psy9494 157 YALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNC-GTAVGEAMT 235 (314)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~-~~l~~~a~~ 235 (314)
+.|+.|++++|++++|+.+|++++++|++++|+||+++||||+++++ +++.+++.+
T Consensus 151 -----------------------l~p~~g~~~~l~~~~G~~~a~~l~l~g~~~~a~eA~~~GLv~~vv~~~~~l~~~a~~ 207 (272)
T PRK06142 151 -----------------------MVADVGSLQRLPRIIGDGHLRELALTGRDIDAAEAEKIGLVNRVYDDADALLAAAHA 207 (272)
T ss_pred -----------------------CCCCchHHHHHHHHhCHHHHHHHHHhCCCcCHHHHHHcCCccEecCCHHHHHHHHHH
Confidence 77789999999999999999999999999999999999999999996 889999999
Q ss_pred HHHHHHhCCHH-HHHHHHHHHhhhhchHHHHHHHHHHHHhh--------hHHHHHHhcCCCCCCC
Q psy9494 236 RAIQMSKLSQS-MLADRATVLSECETCREEWMSERKHYIGI--------SFELKFLQKKKKAKNG 291 (314)
Q Consensus 236 ~a~~la~~~~~-~~~~K~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~af~ekr~p~~~~ 291 (314)
++++|++.||. ++.+|+.++........+....+...... ....+|++||+|.|+|
T Consensus 208 ~a~~ia~~~~~a~~~~K~~l~~~~~~~l~~~~~~~~~~~~~~~~~~d~~egv~af~~kr~p~~~~ 272 (272)
T PRK06142 208 TAREIAAKSPLAVRGTKEVLDYMRDHRVADGLRYVATWNAAMLPSKDLTEAIAAHMEKRPPEFTG 272 (272)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCccHHHHHHHHhcCCCCCCCC
Confidence 99999999999 99999999876544333332222111111 1126999999999975
No 11
>PRK09076 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.1e-50 Score=376.47 Aligned_cols=241 Identities=23% Similarity=0.318 Sum_probs=204.5
Q ss_pred cccEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCC-CCccccCCcccccCCCCch---h
Q psy9494 14 VSSVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQE-GNFCSGFDLHELDENPDTK---L 89 (314)
Q Consensus 14 ~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~---~ 89 (314)
++.|.++++++|++||||||++ |++|.+|+.+|.++++++++|+++|+|||||.| ++||+|+|++++....... .
T Consensus 2 ~~~v~~~~~~~v~~itlnrp~~-Nal~~~~~~~l~~al~~~~~d~~vrvvVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~ 80 (258)
T PRK09076 2 MIELDLEIDGHVAILTLNNPPA-NTWTADSLQALKQLVLELNADKDVYALVITGDGEKFFSAGADLNLFADGDKAVAREM 80 (258)
T ss_pred ceEEEEEEECCEEEEEECCCCc-CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCceEeCcCHHHHhhcChhhHHHH
Confidence 4578899999999999999986 999999999999999999999999999999998 7899999999875322111 1
Q ss_pred HHHHHHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhccccccccc
Q psy9494 90 FDDFREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLK 167 (314)
Q Consensus 90 ~~~~~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~~ 167 (314)
...+.+.+.. ++||||||+|||+|+|||++|+++||+|||+++++|++||+++|
T Consensus 81 ~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G------------------------ 136 (258)
T PRK09076 81 ARRFGEAFEALSAFRGVSIAAINGYAMGGGLECALACDIRIAEEQAQMALPEASVG------------------------ 136 (258)
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEecCCCEeeCcccccC------------------------
Confidence 1122223333 89999999999999999999999999999999999999999999
Q ss_pred ccccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHHhCCHH-
Q psy9494 168 HSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQS- 246 (314)
Q Consensus 168 ~~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~~~- 246 (314)
+.|++|++++|++++|..+|++++++|++++|+||+++||||+++|++++.+++.+++++|+..||.
T Consensus 137 ------------l~p~~g~~~~l~~~iG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a 204 (258)
T PRK09076 137 ------------LLPCAGGTQNLPWLVGEGWAKRMILCGERVDAATALRIGLVEEVVEKGEAREAALALAQKVANQSPSA 204 (258)
T ss_pred ------------CCCCccHHHHHHHHhCHHHHHHHHHcCCcCCHHHHHHCCCCceecCchhHHHHHHHHHHHHHhCCHHH
Confidence 7778999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhchHHHHHHHHHHHHhhh--------HHHHHHhcCCCCCCC
Q psy9494 247 MLADRATVLSECETCREEWMSERKHYIGIS--------FELKFLQKKKKAKNG 291 (314)
Q Consensus 247 ~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~af~ekr~p~~~~ 291 (314)
++.+|+.++........+....+....... ...+|++||+|.|++
T Consensus 205 ~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~eg~~af~~kr~p~~~~ 257 (258)
T PRK09076 205 VAACKTLIQAARNGPRAAALALERELFVDLFDTEDQREGVNAFLEKRAPQWKN 257 (258)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhcCCCCCCCC
Confidence 999999998765443333322221111111 126999999999976
No 12
>PRK07658 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1e-50 Score=376.01 Aligned_cols=241 Identities=25% Similarity=0.372 Sum_probs=204.9
Q ss_pred ccEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCc-h---hH
Q psy9494 15 SSVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDT-K---LF 90 (314)
Q Consensus 15 ~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~-~---~~ 90 (314)
+.+.++++++|++||||||++ |++|.+|+++|.++++++++|+++|+|||+|.|++||+|.|++++...... . ..
T Consensus 2 ~~i~~~~~~~v~~itl~rp~~-Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~ 80 (257)
T PRK07658 2 KFLSVRVEDHVAVITLNHPPA-NALSSQVLHELSELLDQVEKDDNVRVVVIHGEGRFFSAGADIKEFTSVTEAEQATELA 80 (257)
T ss_pred ceEEEEeeCCEEEEEECCCCC-CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceEeCcCHHHHhccCchhhHHHHH
Confidence 367889999999999999986 999999999999999999999999999999999999999999987543221 1 11
Q ss_pred HHHHHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhcccccccccc
Q psy9494 91 DDFREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKH 168 (314)
Q Consensus 91 ~~~~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~~~ 168 (314)
.....++.. ++||||||+|||+|+|||++|+++||+|||+++++|++||+++|
T Consensus 81 ~~~~~~~~~l~~~~kpvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G------------------------- 135 (257)
T PRK07658 81 QLGQVTFERVEKFSKPVIAAIHGAALGGGLELAMSCHIRFATESAKLGLPELNLG------------------------- 135 (257)
T ss_pred HHHHHHHHHHHhCCCCEEEEEcCeeeeHHHHHHHhCCEEEecCCCcccCcccccC-------------------------
Confidence 112223332 89999999999999999999999999999999999999999999
Q ss_pred cccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHHhCCHH-H
Q psy9494 169 SLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQS-M 247 (314)
Q Consensus 169 ~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~~~-~ 247 (314)
+.|++|++++|++++|..+|++++++|++++|+||+++||||++++++++.+++.+++++|++.||. +
T Consensus 136 -----------l~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~ 204 (257)
T PRK07658 136 -----------LIPGFAGTQRLPRYVGKAKALEMMLTSEPITGAEALKWGLVNGVFPEETLLDDAKKLAKKIAGKSPATT 204 (257)
T ss_pred -----------CCCCCcHHHHHHHHhCHHHHHHHHHcCCCcCHHHHHHcCCcCeecChhHHHHHHHHHHHHHHhCCHHHH
Confidence 6778899999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred HHHHHHHHhhhhchHHHHHHHHHHHHhhh--------HHHHHHhcCCCCCCCC
Q psy9494 248 LADRATVLSECETCREEWMSERKHYIGIS--------FELKFLQKKKKAKNGH 292 (314)
Q Consensus 248 ~~~K~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~af~ekr~p~~~~~ 292 (314)
+.+|+.++........+.+..+....... ...+|++||+|.|+++
T Consensus 205 ~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~egi~af~~kr~p~~~~~ 257 (257)
T PRK07658 205 RAVLELLQTTKSSSYYEGVKREAKIFGEVFTSEDAKEGVQAFLEKRKPSFSGK 257 (257)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCCCCCC
Confidence 99999998765544433333222211111 1269999999999864
No 13
>TIGR02280 PaaB1 phenylacetate degradation probable enoyl-CoA hydratase paaB. This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE).
Probab=100.00 E-value=1e-50 Score=376.26 Aligned_cols=239 Identities=23% Similarity=0.385 Sum_probs=202.3
Q ss_pred EEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCC--chhHHH--
Q psy9494 17 VCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPD--TKLFDD-- 92 (314)
Q Consensus 17 v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~--~~~~~~-- 92 (314)
|.++++++|++||||||++.|++|.+|+.+|.++++++++|+ +|+|||||.|++||+|+|++++..... ......
T Consensus 1 ~~~e~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~-v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~ 79 (256)
T TIGR02280 1 ILSALEAGVARLTLNRPDKLNSFTAEMHLELREALERVERDD-ARALMLTGAGRGFCAGQDLSERNPTPGGAPDLGRTIE 79 (256)
T ss_pred CeEEEECCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCC-cEEEEEECCCCCcccCcCHHHHhhccccchhHHHHHH
Confidence 357889999999999999999999999999999999999998 999999999999999999998754221 111111
Q ss_pred --HHHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhcccccccccc
Q psy9494 93 --FREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKH 168 (314)
Q Consensus 93 --~~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~~~ 168 (314)
+...+.. .+||||||+|||+|+|||++|+++||+|||+++++|++||+++|
T Consensus 80 ~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~~lG------------------------- 134 (256)
T TIGR02280 80 TFYNPLVRRLRALPLPVVCAVNGVAAGAGANLALACDIVLAAESARFIQAFAKIG------------------------- 134 (256)
T ss_pred HHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEecCCCEEeChhhhcC-------------------------
Confidence 1122222 89999999999999999999999999999999999999999999
Q ss_pred cccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHHhCCHH-H
Q psy9494 169 SLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQS-M 247 (314)
Q Consensus 169 ~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~~~-~ 247 (314)
+.|++|+++++++++|+.+|++|+++|++++|+||+++||||+++|++++.+++.+++++|++.||. +
T Consensus 135 -----------~~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~ 203 (256)
T TIGR02280 135 -----------LIPDSGGTWSLPRLVGRARAMGLAMLGEKLDARTAASWGLIWQVVDDAALMDEAQALAVHLAAQPTRGL 203 (256)
T ss_pred -----------CCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCcceeeChHHHHHHHHHHHHHHHhCCHHHH
Confidence 7778899999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred HHHHHHHHhhhhchHHHHHHHHHHHHhh--------hHHHHHHhcCCCCCCCC
Q psy9494 248 LADRATVLSECETCREEWMSERKHYIGI--------SFELKFLQKKKKAKNGH 292 (314)
Q Consensus 248 ~~~K~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~af~ekr~p~~~~~ 292 (314)
+.+|+.++........+....+...... ....+|++||+|.|+++
T Consensus 204 ~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~~~~~ 256 (256)
T TIGR02280 204 ALTKRAIQAAATNSLDTQLDLERDLQRELGRSADYAEGVTAFLDKRNPQFTGK 256 (256)
T ss_pred HHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcChhHHHHHHHHHcCCCCCCCCC
Confidence 9999999876544433332222111111 11269999999999874
No 14
>PRK08258 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.1e-50 Score=380.26 Aligned_cols=248 Identities=23% Similarity=0.315 Sum_probs=208.6
Q ss_pred hhhccc--cEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCC--
Q psy9494 10 MLRLVS--SVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENP-- 85 (314)
Q Consensus 10 ~~~~~~--~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~-- 85 (314)
+.+.|. .+.++++++|++|+||||++.|++|.+|+.+|.+++++++.|+++|+|||||.|++||+|.|++++....
T Consensus 10 ~~~~~~~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g~~FsaG~Dl~~~~~~~~~ 89 (277)
T PRK08258 10 PLAGYEARHFLWEVDDGVATITLNRPERKNPLTFESYAELRDLFRELVYADDVKAVVLTGAGGNFCSGGDVHEIIGPLTK 89 (277)
T ss_pred ccccccccceEEEEECCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEeCCCCCcccccCHHHHhccccc
Confidence 555565 6889999999999999999999999999999999999999999999999999999999999999874311
Q ss_pred -CchhHHH----HHHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhh
Q psy9494 86 -DTKLFDD----FREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYA 158 (314)
Q Consensus 86 -~~~~~~~----~~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~ 158 (314)
....... +.+.+.. ++||||||+|||+|+|||++|+++||+|||+++++|++||.++|+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl-------------- 155 (277)
T PRK08258 90 MDMPELLAFTRMTGDLVKAMRACPQPIIAAVDGVCAGAGAILAMASDLRLGTPSAKTAFLFTRVGL-------------- 155 (277)
T ss_pred cChhHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEecCCCEEeccccccCc--------------
Confidence 1111111 1222222 899999999999999999999999999999999999999999993
Q ss_pred cccccccccccccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHH
Q psy9494 159 LHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAI 238 (314)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~ 238 (314)
+||++|++++|++++|..+|++++++|++++|+||+++||||+++|++++.+++.++++
T Consensus 156 ---------------------~p~~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~ 214 (277)
T PRK08258 156 ---------------------AGADMGACALLPRIIGQGRASELLYTGRSMSAEEGERWGFFNRLVEPEELLAEAQALAR 214 (277)
T ss_pred ---------------------CCCCchHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCCcEecCHHHHHHHHHHHHH
Confidence 44578899999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCHH-HHHHHHHHHhhhhchHHHHHHHHHHHHhhh--------HHHHHHhcCCCCCCCC
Q psy9494 239 QMSKLSQS-MLADRATVLSECETCREEWMSERKHYIGIS--------FELKFLQKKKKAKNGH 292 (314)
Q Consensus 239 ~la~~~~~-~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~af~ekr~p~~~~~ 292 (314)
+|+..||. ++.+|+.++.......++....+....... ...+|+|||+|.|+++
T Consensus 215 ~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~d~~eg~~af~ekr~p~~~~~ 277 (277)
T PRK08258 215 RLAAGPTFAHGMTKTMLHQEWDMGLEEAIEAEAQAQAICMQTEDFRRAYEAFVAKRKPVFEGD 277 (277)
T ss_pred HHHhCCHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhcCCCCCCCCC
Confidence 99999999 999999998765544443333222211111 1269999999999864
No 15
>PRK05995 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1e-50 Score=377.20 Aligned_cols=243 Identities=19% Similarity=0.282 Sum_probs=202.9
Q ss_pred ccccEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCC--C-chh
Q psy9494 13 LVSSVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENP--D-TKL 89 (314)
Q Consensus 13 ~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~--~-~~~ 89 (314)
.++.+.++++++|++||||||++.|++|.+|+.+|.+++++++.|+++|+|||||.|++||+|.|++++.... . ...
T Consensus 2 ~~~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~ 81 (262)
T PRK05995 2 MYETLEIEQRGQVATVTLNRPDVRNAFNETVIAELTAAFRALDADDSVRAVVLAGAGKAFCAGADLNWMKKMAGYSDDEN 81 (262)
T ss_pred CCceEEEEeeCCEEEEEEcCcccccCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCccccCcCHHHHhhhcccCchhh
Confidence 3567899999999999999999999999999999999999999999999999999999999999999874321 1 111
Q ss_pred ---HHHHHHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhcccccc
Q psy9494 90 ---FDDFREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRT 164 (314)
Q Consensus 90 ---~~~~~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~ 164 (314)
...+.+.+.. ++||||||+|||+|+|||++|+++||+|||+++++|++||+++|
T Consensus 82 ~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G--------------------- 140 (262)
T PRK05995 82 RADARRLADMLRAIYRCPKPVIARVHGDAYAGGMGLVAACDIAVAADHAVFCLSEVRLG--------------------- 140 (262)
T ss_pred hhHHHHHHHHHHHHHcCCCCEEEEECCEEEhhHHHHHHhCCEEEeeCCCEEeCcccccc---------------------
Confidence 1122233333 89999999999999999999999999999999999999999999
Q ss_pred cccccccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHHhCC
Q psy9494 165 QLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLS 244 (314)
Q Consensus 165 ~~~~~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~ 244 (314)
+.|++|++ ++++++|+.+|++++++|++++|+||+++||||+++|++++.+++.+++++|++.|
T Consensus 141 ---------------l~p~~g~~-~l~~~vg~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~ 204 (262)
T PRK05995 141 ---------------LIPATISP-YVIRAMGERAARRYFLTAERFDAAEALRLGLVHEVVPAEALDAKVDELLAALVANS 204 (262)
T ss_pred ---------------cCccchHH-HHHHHhCHHHHHHHHHcCCccCHHHHHHcCCCCeecCHHHHHHHHHHHHHHHHhCC
Confidence 66666654 58999999999999999999999999999999999999999999999999999999
Q ss_pred HH-HHHHHHHHHhhhhchHHHH-HHHHHHHHh--------hhHHHHHHhcCCCCCCCC
Q psy9494 245 QS-MLADRATVLSECETCREEW-MSERKHYIG--------ISFELKFLQKKKKAKNGH 292 (314)
Q Consensus 245 ~~-~~~~K~~~~~~~~~~~~~~-~~~~~~~~~--------~~~~~af~ekr~p~~~~~ 292 (314)
|. ++.+|+.++.......... ...+..... .....+|++||+|.|+|+
T Consensus 205 ~~a~~~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~d~~e~~~af~~kr~p~~~~~ 262 (262)
T PRK05995 205 PQAVRAGKRLVRDVAGRPIDAALIADTASRIALIRATEEAREGVAAFLEKRKPAWRGR 262 (262)
T ss_pred HHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHHHhcCHHHHHHHHHHhcCCCCCCCCC
Confidence 99 9999999987544332222 221111111 111269999999999875
No 16
>PRK05980 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1e-50 Score=376.90 Aligned_cols=239 Identities=24% Similarity=0.337 Sum_probs=203.2
Q ss_pred ccEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCC-CCccccCCcccccCCC---CchhH
Q psy9494 15 SSVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQE-GNFCSGFDLHELDENP---DTKLF 90 (314)
Q Consensus 15 ~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~---~~~~~ 90 (314)
+.|.++++++|++||||||+++|++|.+|+.+|.+++++++.|+++|+|||||.| ++||+|.|++++.... .....
T Consensus 3 ~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~ 82 (260)
T PRK05980 3 DTVLIEIRDGIALLTLNRPEKLNALNYALIDRLLARLDAIEVDESVRAVILTGAGDRAFSAGADIHEFSASVAAGADVAL 82 (260)
T ss_pred ceEEEEEECCEEEEEECCcccccCCCHHHHHHHHHHHHHHhhCCCcEEEEEEeCCCCceEcCcCHHHHhhhccccchhhH
Confidence 4688999999999999999999999999999999999999999999999999998 7999999999874321 11111
Q ss_pred HHH----HHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhcccccc
Q psy9494 91 DDF----REFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRT 164 (314)
Q Consensus 91 ~~~----~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~ 164 (314)
..+ ...+.. ++||||||+|||+|+|||++|+++||+|||+++++|++||+++|
T Consensus 83 ~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G--------------------- 141 (260)
T PRK05980 83 RDFVRRGQAMTARLEAFPKPVIAAVNGLAFGGGCEITEAVHLAIASERALFAKPEIRLG--------------------- 141 (260)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEEcCEEEhhhhHHhHhCCEEEecCCCEecCcccccC---------------------
Confidence 111 222222 89999999999999999999999999999999999999999999
Q ss_pred cccccccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHHhCC
Q psy9494 165 QLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLS 244 (314)
Q Consensus 165 ~~~~~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~ 244 (314)
++|++|++++|++++|..+|++++++|++++|+||+++||||+++|++++.+++.++++++++.|
T Consensus 142 ---------------l~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~ 206 (260)
T PRK05980 142 ---------------MPPTFGGTQRLPRLAGRKRALELLLTGDAFSAERALEIGLVNAVVPHEELLPAARALARRIIRHS 206 (260)
T ss_pred ---------------CCCCchHhhHHHhhcCHHHHHHHHHcCCccCHHHHHHcCCCCcccCHHHHHHHHHHHHHHHHhCC
Confidence 77789999999999999999999999999999999999999999999999999999999999999
Q ss_pred HH-HHHHHHHHHhhhhchHHHHHHHHHHHHhh--------hHHHHHHhcCCCCC
Q psy9494 245 QS-MLADRATVLSECETCREEWMSERKHYIGI--------SFELKFLQKKKKAK 289 (314)
Q Consensus 245 ~~-~~~~K~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~af~ekr~p~~ 289 (314)
|. ++.+|+.++........+....+...... ....+|++||+|.|
T Consensus 207 p~a~~~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr~p~~ 260 (260)
T PRK05980 207 PVAVAAILTAVTRGLNLSIAEGLLIESEQFARMAGSADLREGLAAWIERRRPAY 260 (260)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhccCCCCC
Confidence 99 99999999876554443333222211111 11269999999987
No 17
>PRK08139 enoyl-CoA hydratase; Validated
Probab=100.00 E-value=1.5e-50 Score=377.56 Aligned_cols=245 Identities=20% Similarity=0.302 Sum_probs=205.7
Q ss_pred hhccccEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCchhH
Q psy9494 11 LRLVSSVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTKLF 90 (314)
Q Consensus 11 ~~~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~ 90 (314)
.+..+.+.++++++|++||||||+++|++|.+|+.+|.+++++++.|++||+|||||.|++||+|.|++++.........
T Consensus 7 ~~~~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~ 86 (266)
T PRK08139 7 ATEAPLLLREDRDGVATLTLNRPQAFNALSEAMLAALQAALDAIAADPSVRVVVLAAAGKAFCAGHDLKEMRAARGLAYF 86 (266)
T ss_pred cccCCceEEEeeCCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhcCCCeeEEEEecCCCcceeccCHHHHhcccchhHH
Confidence 34556789999999999999999999999999999999999999999999999999999999999999987543221111
Q ss_pred H----HHHHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhcccccc
Q psy9494 91 D----DFREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRT 164 (314)
Q Consensus 91 ~----~~~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~ 164 (314)
. .+.+.+.. ++||||||+|||+|+|||++|+++||+|||+++++|++||.++|
T Consensus 87 ~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G--------------------- 145 (266)
T PRK08139 87 RALFARCSRVMQAIVALPQPVIARVHGIATAAGCQLVASCDLAVAADTARFAVPGVNIG--------------------- 145 (266)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEECceeeHHHHHHHHhCCEEEEeCCCEEeCcccCcC---------------------
Confidence 1 12222322 89999999999999999999999999999999999999999999
Q ss_pred cccccccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHHhCC
Q psy9494 165 QLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLS 244 (314)
Q Consensus 165 ~~~~~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~ 244 (314)
++|++ ++++|++++|..+|++++++|++++|+||+++||||+++|++++.+++.+++++|++.|
T Consensus 146 ---------------l~p~~-~~~~l~r~vG~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~ 209 (266)
T PRK08139 146 ---------------LFCST-PMVALSRNVPRKQAMEMLLTGEFIDAATAREWGLVNRVVPADALDAAVARLAAVIAAKS 209 (266)
T ss_pred ---------------CCCCc-cHHHHHHHhCHHHHHHHHHcCCccCHHHHHHcCCccEeeChhHHHHHHHHHHHHHHhCC
Confidence 55554 45789999999999999999999999999999999999999999999999999999999
Q ss_pred HH-HHHHHHHHHhhhhchHHHHHHHHHHHHhhh--------HHHHHHhcCCCCCCCC
Q psy9494 245 QS-MLADRATVLSECETCREEWMSERKHYIGIS--------FELKFLQKKKKAKNGH 292 (314)
Q Consensus 245 ~~-~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~af~ekr~p~~~~~ 292 (314)
|. ++.+|+.++........+.+..+....... ...+|++||+|.|.++
T Consensus 210 ~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~~~~~ 266 (266)
T PRK08139 210 PAAVRIGKEAFYRQAEMPLADAYAYAGDVMAENMMAEDAEEGIDAFLEKRPPEWRGR 266 (266)
T ss_pred HHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhcCCCCCCCCC
Confidence 99 999999998765544433332222111111 1269999999999864
No 18
>PRK08150 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2e-50 Score=374.54 Aligned_cols=239 Identities=26% Similarity=0.328 Sum_probs=202.3
Q ss_pred ccEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCch---hHH
Q psy9494 15 SSVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTK---LFD 91 (314)
Q Consensus 15 ~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~---~~~ 91 (314)
+.|.++++++|++||||||++.|++|.+|+.+|.+++++++ +++|+|||||.|++||+|.|++++....... ...
T Consensus 2 ~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~--~~vr~vvltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~ 79 (255)
T PRK08150 2 SLVSYELDGGVATIGLNRPAKRNALNDGLIAALRAAFARLP--EGVRAVVLHGEGDHFCAGLDLSELRERDAGEGMHHSR 79 (255)
T ss_pred ceEEEEeeCCEEEEEEcCCccccCCCHHHHHHHHHHHHHhh--cCCeEEEEECCCCceecCcCHHHHhhccchhHHHHHH
Confidence 46788999999999999999999999999999999999997 7899999999999999999999875432111 112
Q ss_pred HHHHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhccccccccccc
Q psy9494 92 DFREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHS 169 (314)
Q Consensus 92 ~~~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~~~~ 169 (314)
.+.+.+.. ++||||||+|||+|+|||++|+++||+|||+++++|++||+++|
T Consensus 80 ~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G-------------------------- 133 (255)
T PRK08150 80 RWHRVFDKIQYGRVPVIAALHGAVVGGGLELASAAHIRVADESTYFALPEGQRG-------------------------- 133 (255)
T ss_pred HHHHHHHHHHhCCCCEEEEECCEEEcHHHHHHHhCCEEEEeCCCEEeccccccC--------------------------
Confidence 22333333 89999999999999999999999999999999999999999999
Q ss_pred ccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHHhCCHH-HH
Q psy9494 170 LRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQS-ML 248 (314)
Q Consensus 170 ~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~~~-~~ 248 (314)
++|++|+++++++++|+.+|++++++|++++|+||+++||||+++|++++.+++.+++++|++.||. ++
T Consensus 134 ----------l~p~~g~~~~l~~~iG~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~ 203 (255)
T PRK08150 134 ----------IFVGGGGSVRVPRLIGVARMTDMMLTGRVYDAQEGERLGLAQYLVPAGEALDKAMELARRIAQNAPLTNF 203 (255)
T ss_pred ----------CCCCccHHHHHHHHhCHHHHHHHHHcCCcCCHHHHHHcCCccEeeCchHHHHHHHHHHHHHHhCCHHHHH
Confidence 7778899999999999999999999999999999999999999999999999999999999999999 99
Q ss_pred HHHHHHHhhhhchHHHHHHHHHHHH--------hhhHHHHHHhcCCCCCCC
Q psy9494 249 ADRATVLSECETCREEWMSERKHYI--------GISFELKFLQKKKKAKNG 291 (314)
Q Consensus 249 ~~K~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~af~ekr~p~~~~ 291 (314)
.+|+.++.......+.....+.... ......+|++||+|.|+.
T Consensus 204 ~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~s~d~~eg~~af~~kr~p~~~~ 254 (255)
T PRK08150 204 AVLNALPRIADMSADDGLFVESLMAAVAQSAPEAKERLRAFLEKKAAKVKP 254 (255)
T ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhccCCCCCCC
Confidence 9999998765443333222221111 111126999999999963
No 19
>PRK06144 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.8e-50 Score=376.12 Aligned_cols=248 Identities=24% Similarity=0.258 Sum_probs=208.0
Q ss_pred HhhhccccEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCC-CCccccCCcccccCCCCc
Q psy9494 9 AMLRLVSSVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQE-GNFCSGFDLHELDENPDT 87 (314)
Q Consensus 9 ~~~~~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~ 87 (314)
+|.+..+.|.++++++|++|+||||+++|++|.+|+++|.++++++++|+++|+|||||.| ++||+|+|++++......
T Consensus 2 ~~~~~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVltg~g~~~F~aG~Dl~~~~~~~~~ 81 (262)
T PRK06144 2 AMTTSTDELLLEVRGGIARITFNRPAARNAMTWAMYEGLAEICEAIAADPSIRAVVLRGAGDKAFVAGTDIAQFRAFSTA 81 (262)
T ss_pred CcccCCCceEEEeeCCEEEEEecCCcccCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcCHHHHhhccch
Confidence 3566778899999999999999999999999999999999999999999999999999998 799999999987543221
Q ss_pred h----hHHHHHHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccc-cccccccccccchhhhhcc
Q psy9494 88 K----LFDDFREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRR-FVYLKDSLLSSGVVLYALH 160 (314)
Q Consensus 88 ~----~~~~~~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~-~G~~~~~~~~~g~~~~~~~ 160 (314)
. ....+.+.+.. ++||||||+|||+|+|||++|+++||+|||+++++|++||.+ +|
T Consensus 82 ~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~~G----------------- 144 (262)
T PRK06144 82 EDAVAYERRIDRVLGALEQLRVPTIAAIAGACVGGGAAIAAACDLRIATPSARFGFPIARTLG----------------- 144 (262)
T ss_pred hHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeeehHHHHHHhCCEEEecCCCEeechhHHhcc-----------------
Confidence 1 11112223332 899999999999999999999999999999999999999997 99
Q ss_pred cccccccccccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHH
Q psy9494 161 VPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQM 240 (314)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~l 240 (314)
++|++|++++|++++|+.+|++++++|++++|+||+++||||+++|++++.+++.+++++|
T Consensus 145 -------------------~~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~i 205 (262)
T PRK06144 145 -------------------NCLSMSNLARLVALLGAARVKDMLFTARLLEAEEALAAGLVNEVVEDAALDARADALAELL 205 (262)
T ss_pred -------------------CCCCccHHHHHHHHhCHHHHHHHHHcCCCcCHHHHHHcCCcCeecCHHHHHHHHHHHHHHH
Confidence 7778899999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCHH-HHHHHHHHHhhhhchHHHHHH-HHHHH---HhhhHHHHHHhcCCCCCCCC
Q psy9494 241 SKLSQS-MLADRATVLSECETCREEWMS-ERKHY---IGISFELKFLQKKKKAKNGH 292 (314)
Q Consensus 241 a~~~~~-~~~~K~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~af~ekr~p~~~~~ 292 (314)
++.||. ++.+|+.++.......+.... ..... .......+|++||+|.|.++
T Consensus 206 ~~~~~~a~~~~K~~l~~~~~~~l~~~~~~~~~~~~~~~~~e~~~af~~kr~p~~~~~ 262 (262)
T PRK06144 206 AAHAPLTLRATKEALRRLRREGLPDGDDLIRMCYMSEDFREGVEAFLEKRPPKWKGR 262 (262)
T ss_pred HhCCHHHHHHHHHHHHHhhhcCHHHHHHHHHHHhcChHHHHHHHHHhcCCCCCCCCC
Confidence 999999 999999998654432221110 00000 01111269999999999764
No 20
>PRK08138 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.1e-50 Score=375.26 Aligned_cols=245 Identities=23% Similarity=0.356 Sum_probs=206.9
Q ss_pred hccccEEEEE-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCch-h
Q psy9494 12 RLVSSVCTKK-ILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTK-L 89 (314)
Q Consensus 12 ~~~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~-~ 89 (314)
+-.+.+.++. +++|++|+||||++.|++|.+|+.+|.++++++++|+++|+|||||.|++||+|.|++++....... .
T Consensus 4 ~~~~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~ 83 (261)
T PRK08138 4 TATDVVLLERPADGVALLRLNRPEARNALNMEVRQQLAEHFTELSEDPDIRAIVLTGGEKVFAAGADIKEFATAGAIEMY 83 (261)
T ss_pred CCCCCEEEEEccCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCeeEEEEECCCCCeeCCcCHHHHhccchhHHH
Confidence 4456678887 7889999999999999999999999999999999999999999999999999999999875432211 1
Q ss_pred HHHHHHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhccccccccc
Q psy9494 90 FDDFREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLK 167 (314)
Q Consensus 90 ~~~~~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~~ 167 (314)
...+.+++.. ++||||||+|||+|+|||++|+++||+|||+++++|++||+++|
T Consensus 84 ~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G------------------------ 139 (261)
T PRK08138 84 LRHTERYWEAIAQCPKPVIAAVNGYALGGGCELAMHADIIVAGESASFGQPEIKVG------------------------ 139 (261)
T ss_pred HHHHHHHHHHHHhCCCCEEEEEccEEEcHHHHHHHhCCEEEecCCCEeeCcccccc------------------------
Confidence 1222233332 89999999999999999999999999999999999999999999
Q ss_pred ccccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHHhCCHH-
Q psy9494 168 HSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQS- 246 (314)
Q Consensus 168 ~~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~~~- 246 (314)
++|++|++++|++++|+.+|++|+++|++++|+||+++||||+++|++++.+++.++++++++.||.
T Consensus 140 ------------l~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a 207 (261)
T PRK08138 140 ------------LMPGAGGTQRLVRAVGKFKAMRMALTGCMVPAPEALAIGLVSEVVEDEQTLPRALELAREIARMPPLA 207 (261)
T ss_pred ------------cCCCCcHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHCCCCcEecCchHHHHHHHHHHHHHHhCCHHH
Confidence 7778899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhchHHHHHHHHHHHHh--------hhHHHHHHhcCCCCCCCC
Q psy9494 247 MLADRATVLSECETCREEWMSERKHYIG--------ISFELKFLQKKKKAKNGH 292 (314)
Q Consensus 247 ~~~~K~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~af~ekr~p~~~~~ 292 (314)
++.+|+.++........+....+..... .....+|++||+|.|+++
T Consensus 208 ~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~i~af~~kr~~~~~~~ 261 (261)
T PRK08138 208 LAQIKEVVLAGADAPLDAALALERKAFQLLFDSEDQKEGMDAFLEKRKPAYKGK 261 (261)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhcCCCCCCCCC
Confidence 9999999987654433332222211111 111279999999999764
No 21
>PRK05809 3-hydroxybutyryl-CoA dehydratase; Validated
Probab=100.00 E-value=2.4e-50 Score=374.34 Aligned_cols=244 Identities=25% Similarity=0.348 Sum_probs=207.6
Q ss_pred ccccEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCC-CCccccCCcccccCCCCch---
Q psy9494 13 LVSSVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQE-GNFCSGFDLHELDENPDTK--- 88 (314)
Q Consensus 13 ~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~--- 88 (314)
.++.+.++++++|++||||||++.|++|.+|+.+|.++++++++|+++|+|||||.| ++||+|+|++++.......
T Consensus 2 ~~~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~~F~aG~Dl~~~~~~~~~~~~~ 81 (260)
T PRK05809 2 ELKNVILEKEGHIAVVTINRPKALNALNSETLKELDTVLDDIENDDNVYAVILTGAGEKAFVAGADISEMKDLNEEEGRK 81 (260)
T ss_pred CcceEEEEEeCCEEEEEECCCcccCCCCHHHHHHHHHHHHHHhcCCCcEEEEEEcCCCCceeeCcChHhHhccChHHHHH
Confidence 356788999999999999999999999999999999999999999999999999999 9999999999875432111
Q ss_pred hHHHHHHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhcccccccc
Q psy9494 89 LFDDFREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQL 166 (314)
Q Consensus 89 ~~~~~~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~ 166 (314)
......+.+.. ++||||||+|||+|+|||++|+++||+|||+++++|++||+++|
T Consensus 82 ~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~va~~~a~f~~pe~~~G----------------------- 138 (260)
T PRK05809 82 FGLLGNKVFRKLENLDKPVIAAINGFALGGGCELSMACDIRIASEKAKFGQPEVGLG----------------------- 138 (260)
T ss_pred HHHHHHHHHHHHHcCCCCEEEEEcCeeecHHHHHHHhCCEEEeeCCCEEeCcccccC-----------------------
Confidence 11111222322 89999999999999999999999999999999999999999999
Q ss_pred cccccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHHhCCHH
Q psy9494 167 KHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQS 246 (314)
Q Consensus 167 ~~~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~~~ 246 (314)
++|+.|++++|++++|+.+|++++++|++++|+||+++||||+++|++++.+++.+++++|+..||.
T Consensus 139 -------------l~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~ 205 (260)
T PRK05809 139 -------------ITPGFGGTQRLARIVGPGKAKELIYTGDMINAEEALRIGLVNKVVEPEKLMEEAKALANKIAANAPI 205 (260)
T ss_pred -------------CCCCccHHHHHHHHhCHHHHHHHHHhCCCCCHHHHHHcCCCCcccChHHHHHHHHHHHHHHHhCCHH
Confidence 7778899999999999999999999999999999999999999999999999999999999999999
Q ss_pred -HHHHHHHHHhhhhchHHHHHHHHHHHHhh--------hHHHHHHhcCCCCCCCC
Q psy9494 247 -MLADRATVLSECETCREEWMSERKHYIGI--------SFELKFLQKKKKAKNGH 292 (314)
Q Consensus 247 -~~~~K~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~af~ekr~p~~~~~ 292 (314)
++.+|+.++........+.+..+...... ....+|++||+|.|.++
T Consensus 206 a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~egi~af~~~r~p~~~~~ 260 (260)
T PRK05809 206 AVKLCKDAINRGMQVDIDTAVAIEAEDFGECFSTEDQTEGMTAFVEKREKNFKNK 260 (260)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhcCCCCCCCCC
Confidence 99999999876554443333222111111 11269999999999874
No 22
>PLN02664 enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase
Probab=100.00 E-value=1.6e-50 Score=378.86 Aligned_cols=246 Identities=21% Similarity=0.353 Sum_probs=204.8
Q ss_pred hhccccEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCC----
Q psy9494 11 LRLVSSVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPD---- 86 (314)
Q Consensus 11 ~~~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~---- 86 (314)
+.....+..+.+++|++|+||||++.|++|.+|+++|.+++++++.|+++|+|||||.|++||+|+|++++.....
T Consensus 4 ~~~~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vrvvVltg~g~~FcaG~Dl~~~~~~~~~~~~ 83 (275)
T PLN02664 4 YKTLEIIQKSPNSSVFHLNLNRPSQRNALSLDFFTEFPKALSSLDQNPNVSVIILSGAGDHFCSGIDLKTLNSISEQSSS 83 (275)
T ss_pred ccceEEEEecCCCCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCceeeCcChHHhhhccccccc
Confidence 3444455666789999999999999999999999999999999999999999999999999999999998753210
Q ss_pred -c-----hhHH----HHHHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccch
Q psy9494 87 -T-----KLFD----DFREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGV 154 (314)
Q Consensus 87 -~-----~~~~----~~~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~ 154 (314)
. .... .+.+.+.. ++||||||+|||+|+|||++|+++||+|||+++++|++||+++|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G----------- 152 (275)
T PLN02664 84 GDRGRSGERLRRKIKFLQDAITAIEQCRKPVIAAIHGACIGGGVDIVTACDIRYCSEDAFFSVKEVDLA----------- 152 (275)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCccccchHHHHHhCCEEEecCCCEeccHHHhhC-----------
Confidence 0 1111 11222222 89999999999999999999999999999999999999999999
Q ss_pred hhhhcccccccccccccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCC-CchHHHH
Q psy9494 155 VLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNC-GTAVGEA 233 (314)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~-~~l~~~a 233 (314)
+.|+.|++++|++++|..+|++++++|++++|+||+++||||+++|+ +++.+.+
T Consensus 153 -------------------------l~p~~g~~~~l~~~vG~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~~l~~~~ 207 (275)
T PLN02664 153 -------------------------ITADLGTLQRLPSIVGYGNAMELALTGRRFSGSEAKELGLVSRVFGSKEDLDEGV 207 (275)
T ss_pred -------------------------CCCCccHHHHHHHHhCHHHHHHHHHhCCCCCHHHHHHcCCCceeeCChhHHHHHH
Confidence 77788999999999999999999999999999999999999999995 8899999
Q ss_pred HHHHHHHHhCCHH-HHHHHHHHHhhhhchHHHHHHHHHHHHhh--------hHHHHHHhcCCCCCCCC
Q psy9494 234 MTRAIQMSKLSQS-MLADRATVLSECETCREEWMSERKHYIGI--------SFELKFLQKKKKAKNGH 292 (314)
Q Consensus 234 ~~~a~~la~~~~~-~~~~K~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~af~ekr~p~~~~~ 292 (314)
.+++++|++.||. ++.+|+.++........+....+...... ....+|++||+|.|.++
T Consensus 208 ~~~a~~ia~~~p~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~ekr~p~~~~~ 275 (275)
T PLN02664 208 RLIAEGIAAKSPLAVTGTKAVLLRSRELSVEQGLDYVATWNSAMLVSDDLNEAVSAQIQKRKPVFAKL 275 (275)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccChhHHHHHHHHhccCCCCCCCC
Confidence 9999999999999 99999999876544433333222111111 11269999999999864
No 23
>PRK05981 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.6e-50 Score=375.22 Aligned_cols=244 Identities=25% Similarity=0.360 Sum_probs=206.8
Q ss_pred ccccEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCC-CccEEEEEcCCCCccccCCcccccCCCCc----
Q psy9494 13 LVSSVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDT-ESPLAILYGQEGNFCSGFDLHELDENPDT---- 87 (314)
Q Consensus 13 ~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~-~vr~vVltg~g~~F~aG~Dl~~~~~~~~~---- 87 (314)
.|+.+.++++++|++|+||||+++|++|.+|+++|.++++.++.|+ ++|+|||||.|++||+|+|++++......
T Consensus 2 ~~~~v~~~~~~~i~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~ 81 (266)
T PRK05981 2 QFKKVTLDFDGGVAILTLDHPEVMNAVSIDMLGGLAEALDAIEDGKAEVRCLVLTGAGRGFCTGANLQGRGSGGRESDSG 81 (266)
T ss_pred CcceEEEEeECCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccccCHHhhhccccccccc
Confidence 4677999999999999999999999999999999999999999876 49999999999999999999987532110
Q ss_pred -h----hHHHHHHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhcc
Q psy9494 88 -K----LFDDFREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALH 160 (314)
Q Consensus 88 -~----~~~~~~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~ 160 (314)
. ....+...+.. ++||||||+|||+|+|||++|+++||+|||+++++|++||.++|
T Consensus 82 ~~~~~~~~~~~~~~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~~e~~lG----------------- 144 (266)
T PRK05981 82 GDAGAALETAYHPFLRRLRNLPCPIVTAVNGPAAGVGMSFALMGDLILCARSAYFLQAFRRIG----------------- 144 (266)
T ss_pred chhHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEecCCCEEechHhhcC-----------------
Confidence 1 11112223332 89999999999999999999999999999999999999999999
Q ss_pred cccccccccccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHH
Q psy9494 161 VPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQM 240 (314)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~l 240 (314)
+.|++|+++++++++|+.+|++++++|+.++|+||+++|||++++|++++.+++.++++++
T Consensus 145 -------------------~~p~~g~~~~l~~~vg~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~~~~a~~~a~~l 205 (266)
T PRK05981 145 -------------------LVPDGGSTWLLPRLVGKARAMELSLLGEKLPAETALQWGLVNRVVDDAELMAEAMKLAHEL 205 (266)
T ss_pred -------------------CCCCccHHHHHHHHhHHHHHHHHHHhCCCcCHHHHHHcCCceEeeCHhHHHHHHHHHHHHH
Confidence 7778899999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCHH-HHHHHHHHHhhhhchHHHHHHHHHHHHhhh--------HHHHHHhcCCCCCCCC
Q psy9494 241 SKLSQS-MLADRATVLSECETCREEWMSERKHYIGIS--------FELKFLQKKKKAKNGH 292 (314)
Q Consensus 241 a~~~~~-~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~af~ekr~p~~~~~ 292 (314)
+..||. ++.+|+.++........+....+....... ...+|++||+|.|+++
T Consensus 206 ~~~~~~a~~~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~s~d~~e~~~af~~kr~~~~~~~ 266 (266)
T PRK05981 206 ANGPTVALGLIRKLYWDSPENDFEEQLNLEREAQRIAGKTEDFKEGVGAFLQKRPAQFKGR 266 (266)
T ss_pred HcCCHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHhcChhHHHHHHHHhcCCCCCCCCC
Confidence 999998 999999998765544433333222211111 1269999999999763
No 24
>PRK06127 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.1e-50 Score=375.83 Aligned_cols=244 Identities=23% Similarity=0.336 Sum_probs=206.3
Q ss_pred ccccEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCC-CCccccCCcccccCCCCc-hh-
Q psy9494 13 LVSSVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQE-GNFCSGFDLHELDENPDT-KL- 89 (314)
Q Consensus 13 ~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~-~~- 89 (314)
..+.|.++++++|++|+||||+++|++|.+|+.+|.++++++++|+++++|||+|.| ++||+|+|++++...... ..
T Consensus 9 ~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~ 88 (269)
T PRK06127 9 PTGKLLAEKTGGLGRITFNNPARHNAMSLDMWEALPQALAAAEDDDAIRVVVLTGAGEKAFVSGADISQFEESRSDAEAV 88 (269)
T ss_pred CCCceEEEEECCEEEEEecCCCccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEEeCCCCceecCcCHHHHhhcccchHHH
Confidence 345688999999999999999999999999999999999999999999999999998 799999999987542111 11
Q ss_pred ---HHHHHHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhcccccc
Q psy9494 90 ---FDDFREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRT 164 (314)
Q Consensus 90 ---~~~~~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~ 164 (314)
.......+.. .+||||||+|||+|+|||++|+++||+|||+++++|++||.++|
T Consensus 89 ~~~~~~~~~~~~~i~~~~kPvIaav~G~a~GgG~~LalacD~~ia~~~a~f~~pe~~~G--------------------- 147 (269)
T PRK06127 89 AAYEQAVEAAQAALADYAKPTIACIRGYCIGGGMGIALACDIRIAAEDSRFGIPAARLG--------------------- 147 (269)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEeeCCCEeeCchhhhC---------------------
Confidence 1111222222 89999999999999999999999999999999999999999999
Q ss_pred cccccccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHHhCC
Q psy9494 165 QLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLS 244 (314)
Q Consensus 165 ~~~~~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~ 244 (314)
+.|++|++++|++++|..+|++++++|++++|+||+++||||+++|++++.+++.+++++++..|
T Consensus 148 ---------------l~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~ 212 (269)
T PRK06127 148 ---------------LGYGYDGVKNLVDLVGPSAAKDLFYTARRFDAAEALRIGLVHRVTAADDLETALADYAATIAGNA 212 (269)
T ss_pred ---------------CCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCCCEeeCHHHHHHHHHHHHHHHHhCC
Confidence 67788899999999999999999999999999999999999999999999999999999999999
Q ss_pred HH-HHHHHHHHHhhhhchHHHHHHHHHHHHhhh--------HHHHHHhcCCCCCCCC
Q psy9494 245 QS-MLADRATVLSECETCREEWMSERKHYIGIS--------FELKFLQKKKKAKNGH 292 (314)
Q Consensus 245 ~~-~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~af~ekr~p~~~~~ 292 (314)
|. ++.+|+.++........+....+....... ...+|++||+|.|+++
T Consensus 213 ~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~e~~~af~ekr~p~~~~~ 269 (269)
T PRK06127 213 PLTLRAAKRAIAELLKDEPERDMAACQALVAACFDSEDYREGRAAFMEKRKPVFKGR 269 (269)
T ss_pred HHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhcChHHHHHHHHHhcCCCCCCCCC
Confidence 99 999999998765544333322221111111 1269999999999874
No 25
>PLN02600 enoyl-CoA hydratase
Probab=100.00 E-value=2.6e-50 Score=372.83 Aligned_cols=235 Identities=27% Similarity=0.406 Sum_probs=199.9
Q ss_pred eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcC-CCCccccCCcccccCCCCch---hHHHHHHHH
Q psy9494 22 ILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQ-EGNFCSGFDLHELDENPDTK---LFDDFREFL 97 (314)
Q Consensus 22 ~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~---~~~~~~~~~ 97 (314)
+++|++||||||++.|+||.+|+.+|.+++++++.|+++|+|||||. |++||+|.|++++....... ....+...+
T Consensus 2 ~~~v~~itlnrp~~~Nal~~~~~~~l~~~~~~~~~d~~vr~vVl~g~~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~ 81 (251)
T PLN02600 2 DSGIVELRLDRPEAKNAIGKEMLRGLRSAFEKIQADASARVVMLRSSVPGVFCAGADLKERRKMSPSEVQKFVNSLRSTF 81 (251)
T ss_pred CCcEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEecCCCCceeeCcCHHHHhccChHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999998 58999999999875422211 111122223
Q ss_pred hc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhccccccccccccccccc
Q psy9494 98 QK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLS 175 (314)
Q Consensus 98 ~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 175 (314)
.. ++||||||+|||+|+|||++|+++||+|||+++++|++||.++|
T Consensus 82 ~~l~~~~kPvIAav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~G-------------------------------- 129 (251)
T PLN02600 82 SSLEALSIPTIAVVEGAALGGGLELALSCDLRICGEEAVFGLPETGLA-------------------------------- 129 (251)
T ss_pred HHHHhCCCCEEEEecCeecchhHHHHHhCCEEEeeCCCEEeCcccccC--------------------------------
Confidence 32 89999999999999999999999999999999999999999999
Q ss_pred ccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHHhCCHH-HHHHHHHH
Q psy9494 176 RDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQS-MLADRATV 254 (314)
Q Consensus 176 ~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~~~-~~~~K~~~ 254 (314)
+.|++|++++|++++|+.+|++|+++|++++|+||+++||||+++|++++++++.+++++|++.||. ++.+|+.+
T Consensus 130 ----l~p~~g~~~~l~~~~G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~~~~~a~~~a~~la~~~p~a~~~~K~~l 205 (251)
T PLN02600 130 ----IIPGAGGTQRLPRLVGRSRAKELIFTGRRIGAREAASMGLVNYCVPAGEAYEKALELAQEINQKGPLAIKMAKKAI 205 (251)
T ss_pred ----cCCCchHHHHHHHHhCHHHHHHHHHhCCccCHHHHHHcCCCcEeeChhHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 7778899999999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred HhhhhchHHHHHHHHHHHHhhh--------HHHHHHhcCCCCCCCC
Q psy9494 255 LSECETCREEWMSERKHYIGIS--------FELKFLQKKKKAKNGH 292 (314)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~--------~~~af~ekr~p~~~~~ 292 (314)
+........+....+....... ...+|+|||+|.|+++
T Consensus 206 ~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~ekr~p~~~~~ 251 (251)
T PLN02600 206 NEGSEVDMASGLEIEEECYEQVLKTKDRLEGLAAFAEKRKPVYTGK 251 (251)
T ss_pred HHHccCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhcCCCCCCCCC
Confidence 8765544443333221111111 1269999999999874
No 26
>PRK07657 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=4.1e-50 Score=373.02 Aligned_cols=242 Identities=26% Similarity=0.383 Sum_probs=205.1
Q ss_pred ccEEEEE-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCC-CCccccCCcccccCCCCchh---
Q psy9494 15 SSVCTKK-ILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQE-GNFCSGFDLHELDENPDTKL--- 89 (314)
Q Consensus 15 ~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~~--- 89 (314)
++|.+++ +++|++|+||||++.|++|.+|+.+|.+++++++.|+++|+|||||.| ++||+|.|++++........
T Consensus 3 ~~v~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~ 82 (260)
T PRK07657 3 QNISVDYVTPHVVKITLNRPRAANALSLALLEELQNILTQINEEANVRVVILTGAGEKAFCAGADLKERAGMNEEQVRHA 82 (260)
T ss_pred ceEEEEEccCCEEEEEEeCCcccCCCCHHHHHHHHHHHHHHHhCCCeEEEEEecCCCCceEcCcChHhhhcCChhhHHHH
Confidence 5788886 789999999999999999999999999999999999999999999999 59999999998754222111
Q ss_pred HHHHHHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhccccccccc
Q psy9494 90 FDDFREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLK 167 (314)
Q Consensus 90 ~~~~~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~~ 167 (314)
...+.+.+.. ++||||||+|||+|+|||++|+++||+|||+++++|++||+++|
T Consensus 83 ~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G------------------------ 138 (260)
T PRK07657 83 VSLIRTTMEMVEQLPQPVIAAINGIALGGGLELALACDFRIAAESASLGLTETTLA------------------------ 138 (260)
T ss_pred HHHHHHHHHHHHhCCCCEEEEEcCEeechHHHHHHhCCEEEeeCCCEEcCchhccC------------------------
Confidence 1112223332 89999999999999999999999999999999999999999999
Q ss_pred ccccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHHhCCHH-
Q psy9494 168 HSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQS- 246 (314)
Q Consensus 168 ~~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~~~- 246 (314)
+.|++|++++|++++|..+|++++++|++++|+||+++||||+++|++++++++.+++++|+..||.
T Consensus 139 ------------~~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a 206 (260)
T PRK07657 139 ------------IIPGAGGTQRLPRLIGVGRAKELIYTGRRISAQEAKEIGLVEFVVPAHLLEEKAIEIAEKIASNGPIA 206 (260)
T ss_pred ------------cCCCccHHHHHHHHhCHHHHHHHHHhCCCCCHHHHHHcCCCCeecCHHHHHHHHHHHHHHHHhCCHHH
Confidence 7778899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhchHHHHHHHHHHHHhh--------hHHHHHHhcCCCCCCCC
Q psy9494 247 MLADRATVLSECETCREEWMSERKHYIGI--------SFELKFLQKKKKAKNGH 292 (314)
Q Consensus 247 ~~~~K~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~af~ekr~p~~~~~ 292 (314)
++.+|+.++........+....+...... ....+|++||+|.|+|+
T Consensus 207 ~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~~r~~~~~~~ 260 (260)
T PRK07657 207 VRQAKEAISNGIQVDLHTGLQIEKQAYEGTIPTKDRLEGLQAFKEKRKPMYKGE 260 (260)
T ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHHHhcCHhHHHHHHHHhcCCCCCCCCC
Confidence 99999999876544333322222111111 11269999999999875
No 27
>TIGR03210 badI 2-ketocyclohexanecarboxyl-CoA hydrolase. Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen.
Probab=100.00 E-value=4.1e-50 Score=372.51 Aligned_cols=242 Identities=24% Similarity=0.269 Sum_probs=200.0
Q ss_pred cccEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCC-CCccccCCcccccCCCCch--hH
Q psy9494 14 VSSVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQE-GNFCSGFDLHELDENPDTK--LF 90 (314)
Q Consensus 14 ~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~--~~ 90 (314)
|+.|.++++++|++||||||++.|++|.+|+.+|.+++++++.|+++|+|||||.| ++||+|+|++++....... ..
T Consensus 1 ~~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~ 80 (256)
T TIGR03210 1 YEDILYEKRNGIAWIMINRPAKMNAFRGQTCDELIHALKDAGYDRQIGVIVLAGAGDKAFCTGGDQSTHDGGYDGRGTIG 80 (256)
T ss_pred CCceEEEeeCCEEEEEEcCCccccCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcChHHHhccccchhHHH
Confidence 45688899999999999999999999999999999999999999999999999998 7999999999874321111 11
Q ss_pred HHHHHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhcccccccccc
Q psy9494 91 DDFREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKH 168 (314)
Q Consensus 91 ~~~~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~~~ 168 (314)
..+...+.. ++||||||+|||+|+|||++|+++||+|||+++++|++||.++|
T Consensus 81 ~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G------------------------- 135 (256)
T TIGR03210 81 LPMEELHSAIRDVPKPVIARVQGYAIGGGNVLVTICDLTIASEKAQFGQVGPKVG------------------------- 135 (256)
T ss_pred HHHHHHHHHHHhCCCCEEEEECCEEehhhHHHHHhCCEEEEeCCCEEeccccccc-------------------------
Confidence 112222322 89999999999999999999999999999999999999999999
Q ss_pred cccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHHhCCHH-H
Q psy9494 169 SLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQS-M 247 (314)
Q Consensus 169 ~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~~~-~ 247 (314)
+.|.++++++|++++|+.+|++++++|++++|+||+++||||+++|.+++.+++.+++++|++.||. +
T Consensus 136 -----------~~~~~~~~~~l~~~vG~~~A~~lll~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~ia~~~~~a~ 204 (256)
T TIGR03210 136 -----------SVDPGYGTALLARVVGEKKAREIWYLCRRYTAQEALAMGLVNAVVPHDQLDAEVQKWCDEIVEKSPTAI 204 (256)
T ss_pred -----------ccCCccHHHHHHHHhCHHHHHHHHHhCCCcCHHHHHHcCCceeeeCHHHHHHHHHHHHHHHHhCCHHHH
Confidence 4444567889999999999999999999999999999999999999999999999999999999999 9
Q ss_pred HHHHHHHHhhhhch--HHHHHHHH--HHH---HhhhHHHHHHhcCCCCCCC
Q psy9494 248 LADRATVLSECETC--REEWMSER--KHY---IGISFELKFLQKKKKAKNG 291 (314)
Q Consensus 248 ~~~K~~~~~~~~~~--~~~~~~~~--~~~---~~~~~~~af~ekr~p~~~~ 291 (314)
+.+|+.++...... .+....+. ... .......+|++||+|.|++
T Consensus 205 ~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~~e~~~af~~kr~p~~~~ 255 (256)
T TIGR03210 205 AIAKRSFNMDTAHQRGIAGMGMYALKLYYDTAESREGVKAFQEKRKPEFRK 255 (256)
T ss_pred HHHHHHHHHhhcccchHHHHHHHHHHHHccChhHHHHHHHHhccCCCCCCC
Confidence 99999998653321 11111000 000 0111126999999999975
No 28
>TIGR01929 menB naphthoate synthase (dihydroxynaphthoic acid synthetase). This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches.
Probab=100.00 E-value=3.1e-50 Score=373.94 Aligned_cols=240 Identities=23% Similarity=0.310 Sum_probs=200.8
Q ss_pred ccEEEEE-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCC-CCccccCCcccccCCC--Cch-h
Q psy9494 15 SSVCTKK-ILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQE-GNFCSGFDLHELDENP--DTK-L 89 (314)
Q Consensus 15 ~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~--~~~-~ 89 (314)
+.+.+++ +++|++||||||+++|++|.+|+.+|.+++++++.|+++|+|||||.| ++||+|+|++++.... ... .
T Consensus 2 ~~i~~~~~~~~v~~itlnrp~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~ 81 (259)
T TIGR01929 2 TDIRYEKSTDGIAKITINRPQVRNAFRPLTVKEIIQALDDAREDPDIGVVILTGAGDKAFCSGGDQKVRGDYGYIDDSGV 81 (259)
T ss_pred ceEEEEEcCCCEEEEEecCCccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEEeCCCCceEeCcChHhHhhccccchhhH
Confidence 4578888 899999999999999999999999999999999999999999999999 7999999998764211 111 0
Q ss_pred -HHHHHHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhcccccccc
Q psy9494 90 -FDDFREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQL 166 (314)
Q Consensus 90 -~~~~~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~ 166 (314)
...+..++.. ++||||||+|||+|+|||++|+++||+|||+++++|++||+++|
T Consensus 82 ~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G----------------------- 138 (259)
T TIGR01929 82 HRLNVLDVQRQIRTCPKPVIAMVNGYAIGGGHVLHVVCDLTIAAENARFGQTGPKVG----------------------- 138 (259)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEEcCEEehHHHHHHHhCCEEEecCCCEecCcccccc-----------------------
Confidence 0111222222 89999999999999999999999999999999999999999999
Q ss_pred cccccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHHhCCHH
Q psy9494 167 KHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQS 246 (314)
Q Consensus 167 ~~~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~~~ 246 (314)
+.|++|++++|++++|+.+|++++++|++++|+||+++||||+++|++++.+++.+++++|++.||.
T Consensus 139 -------------~~p~~~~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~ 205 (259)
T TIGR01929 139 -------------SFDGGYGSSYLARIVGQKKAREIWFLCRQYDAEQALDMGLVNTVVPLADLEKETVRWCREILQKSPM 205 (259)
T ss_pred -------------cCCCccHHHHHHHHhHHHHHHHHHHhCCccCHHHHHHcCCcccccCHHHHHHHHHHHHHHHHhCCHH
Confidence 6677888999999999999999999999999999999999999999999999999999999999999
Q ss_pred -HHHHHHHHHhhhhchHHHHHHHHHHHHhh--------hHHHHHHhcCCCCCCC
Q psy9494 247 -MLADRATVLSECETCREEWMSERKHYIGI--------SFELKFLQKKKKAKNG 291 (314)
Q Consensus 247 -~~~~K~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~af~ekr~p~~~~ 291 (314)
++.+|+.++...... ......+...... ....+|++||+|.|++
T Consensus 206 a~~~~K~~l~~~~~~~-~~~~~~e~~~~~~~~~~~d~~egi~af~~kr~p~~~~ 258 (259)
T TIGR01929 206 AIRMLKAALNADCDGQ-AGLQELAGNATMLFYMTEEGQEGRNAFLEKRQPDFSK 258 (259)
T ss_pred HHHHHHHHHHhhhccc-hHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCCCC
Confidence 999999998654322 2222111111111 1126999999999975
No 29
>PRK07327 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=6.3e-50 Score=373.56 Aligned_cols=243 Identities=19% Similarity=0.216 Sum_probs=203.4
Q ss_pred ccccEEEEE-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCc-h--
Q psy9494 13 LVSSVCTKK-ILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDT-K-- 88 (314)
Q Consensus 13 ~~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~-~-- 88 (314)
.++.|.+++ +++|++||||||++.|++|.+|+.+|.+++++++.|+++|+|||||.|++||+|.|++++...... .
T Consensus 9 ~~~~i~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~ 88 (268)
T PRK07327 9 DYPALRFDRPPPGVLEIVLNGPGALNAADARMHRELADIWRDVDRDPDVRVVLIRGEGKAFSAGGDLALVEEMADDFEVR 88 (268)
T ss_pred CCCeEEEEecCCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHhhhCCCceEEEEECCCCCcccccCHHHHhhccCcHHHH
Confidence 456788887 578999999999999999999999999999999999999999999999999999999987542211 1
Q ss_pred --hHHHHHHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhcccccc
Q psy9494 89 --LFDDFREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRT 164 (314)
Q Consensus 89 --~~~~~~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~ 164 (314)
......+.+.. ++||||||+|||+|+|||++|+++||+|||+++++|++||+++|
T Consensus 89 ~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G--------------------- 147 (268)
T PRK07327 89 ARVWREARDLVYNVINCDKPIVSAIHGPAVGAGLVAALLADISIAAKDARIIDGHTRLG--------------------- 147 (268)
T ss_pred HHHHHHHHHHHHHHHcCCCCEEEEEcCeeeehhhHHHHhCCEEEecCCCEEeCcccccC---------------------
Confidence 11112222322 89999999999999999999999999999999999999999999
Q ss_pred cccccccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHHhCC
Q psy9494 165 QLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLS 244 (314)
Q Consensus 165 ~~~~~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~ 244 (314)
++|++|+++++++++|..+|++++++|++++|+||+++||||+++|++++++++.+++++|++.|
T Consensus 148 ---------------l~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~ 212 (268)
T PRK07327 148 ---------------VAAGDHAAIVWPLLCGMAKAKYYLLLCEPVSGEEAERIGLVSLAVDDDELLPKALEVAERLAAGS 212 (268)
T ss_pred ---------------CCCCcchhhHHHHHhCHHHHHHHHHcCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHcCC
Confidence 77788999999999999999999999999999999999999999999999999999999999999
Q ss_pred HH-HHHHHHHHHhhhhc---hHHHHHHHHHH-HH---hhhHHHHHHhcCCCCCCC
Q psy9494 245 QS-MLADRATVLSECET---CREEWMSERKH-YI---GISFELKFLQKKKKAKNG 291 (314)
Q Consensus 245 ~~-~~~~K~~~~~~~~~---~~~~~~~~~~~-~~---~~~~~~af~ekr~p~~~~ 291 (314)
|. ++.+|+.++..... ..+.....+.. .. ......+|++||+|.|+|
T Consensus 213 ~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~~eg~~af~ekr~p~~~~ 267 (268)
T PRK07327 213 QTAIRWTKYALNNWLRMAGPTFDTSLALEFMGFSGPDVREGLASLREKRAPDFPG 267 (268)
T ss_pred HHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHccChhHHHHHHHHHhcCCCCCCC
Confidence 99 99999999864221 12221111111 10 111126999999999987
No 30
>PRK07396 dihydroxynaphthoic acid synthetase; Validated
Probab=100.00 E-value=6.9e-50 Score=374.34 Aligned_cols=243 Identities=23% Similarity=0.311 Sum_probs=203.3
Q ss_pred ccccEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCC-CCccccCCcccccCCC--Cchh
Q psy9494 13 LVSSVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQE-GNFCSGFDLHELDENP--DTKL 89 (314)
Q Consensus 13 ~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~--~~~~ 89 (314)
.++.+.++++++|++||||||++.|++|.+|+.+|.+++++++.|+++|+|||||.| ++||+|+|++++.... ....
T Consensus 11 ~~~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~ 90 (273)
T PRK07396 11 EYEDILYKSADGIAKITINRPEVRNAFRPKTVKEMIDAFADARDDDNIGVIILTGAGDKAFCSGGDQKVRGYGGYVDDDG 90 (273)
T ss_pred CCcceEEEecCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEeCCCCceEeCcChhhhhcccccchhh
Confidence 456788999999999999999999999999999999999999999999999999999 6999999999864311 1110
Q ss_pred HH--HHHHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhccccccc
Q psy9494 90 FD--DFREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQ 165 (314)
Q Consensus 90 ~~--~~~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~ 165 (314)
.. .....+.. ++||||||+|||+|+|||++|+++||+|||+++++|++||.++|
T Consensus 91 ~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G---------------------- 148 (273)
T PRK07396 91 VPRLNVLDLQRLIRTCPKPVIAMVAGYAIGGGHVLHLVCDLTIAADNAIFGQTGPKVG---------------------- 148 (273)
T ss_pred hhhhHHHHHHHHHHhCCCCEEEEECCEEehHHHHHHHhCCEEEeeCCcEEeccccccc----------------------
Confidence 11 11122222 89999999999999999999999999999999999999999999
Q ss_pred ccccccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHHhCCH
Q psy9494 166 LKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQ 245 (314)
Q Consensus 166 ~~~~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~~ 245 (314)
+.|+++++++|++++|+.+|++++++|+.++|+||+++||||+++|++++.+++.+++++|++.||
T Consensus 149 --------------l~p~~~~~~~l~~~vG~~~a~~l~ltg~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~ 214 (273)
T PRK07396 149 --------------SFDGGYGASYLARIVGQKKAREIWFLCRQYDAQEALDMGLVNTVVPLADLEKETVRWCREMLQNSP 214 (273)
T ss_pred --------------ccCCchHHHHHHHHhhHHHHHHHHHhCCCcCHHHHHHcCCcCeecCHHHHHHHHHHHHHHHHhCCH
Confidence 666788899999999999999999999999999999999999999999999999999999999999
Q ss_pred H-HHHHHHHHHhhhhchHHHHHH-HHHHH-------HhhhHHHHHHhcCCCCCCCC
Q psy9494 246 S-MLADRATVLSECETCREEWMS-ERKHY-------IGISFELKFLQKKKKAKNGH 292 (314)
Q Consensus 246 ~-~~~~K~~~~~~~~~~~~~~~~-~~~~~-------~~~~~~~af~ekr~p~~~~~ 292 (314)
. ++.+|+.++..... .+.... +.... .......+|++||+|.|.+.
T Consensus 215 ~a~~~~K~~l~~~~~~-~~~~~~~e~~~~~~~~~~~d~~egi~af~~kr~p~~~~~ 269 (273)
T PRK07396 215 MALRCLKAALNADCDG-QAGLQELAGNATMLFYMTEEAQEGRNAFNEKRQPDFSKF 269 (273)
T ss_pred HHHHHHHHHHHhhhcc-HHHHHHHHHHHHHHHhcChhHHHHHHHHhCCCCCCCCCC
Confidence 9 99999999865432 222211 11110 00111269999999999874
No 31
>PRK06210 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=6.1e-50 Score=373.89 Aligned_cols=244 Identities=24% Similarity=0.332 Sum_probs=205.4
Q ss_pred ccccEEEEEeC-CEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCch---
Q psy9494 13 LVSSVCTKKIL-NITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTK--- 88 (314)
Q Consensus 13 ~~~~v~~~~~~-~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~--- 88 (314)
.++.|.+++++ +|++||||||++.|++|.+|+++|.+++++++.|+++|+|||+|.|++||+|+|++++......+
T Consensus 3 ~~~~i~~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~ 82 (272)
T PRK06210 3 AYDAVLYEVADSGVAVITLNRPDRLNAWTPVMEAEVYAAMDRAEADPAVRVIVLTGAGRGFCAGADMGELQTIDPSDGRR 82 (272)
T ss_pred CcceEEEEECCCCEEEEEeCCcccccCCCHHHHHHHHHHHHHhccCCCeeEEEEECCCCCcccccCHHHHhccCcccccc
Confidence 45778999988 99999999999999999999999999999999999999999999999999999999875422110
Q ss_pred ------hHH----HHHHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhh
Q psy9494 89 ------LFD----DFREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVL 156 (314)
Q Consensus 89 ------~~~----~~~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~ 156 (314)
... .+.+.+.. ++||||||+|||+|+|||++|+++||+|||+++++|++||+++|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~G------------- 149 (272)
T PRK06210 83 DTDVRPFVGNRRPDYQTRYHFLTALRKPVIAAINGACAGIGLTHALMCDVRFAADGAKFTTAFARRG------------- 149 (272)
T ss_pred cccchhhhhhhhhhHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEeCCCEEechHHhcC-------------
Confidence 000 11112222 89999999999999999999999999999999999999999999
Q ss_pred hhcccccccccccccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHH
Q psy9494 157 YALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTR 236 (314)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~ 236 (314)
+.|++|+++++++++|+.+|++|+++|+.++|+||+++||||+++|++++.+++.++
T Consensus 150 -----------------------l~p~~g~~~~l~~~ig~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~ 206 (272)
T PRK06210 150 -----------------------LIAEHGISWILPRLVGHANALDLLLSARTFYAEEALRLGLVNRVVPPDELMERTLAY 206 (272)
T ss_pred -----------------------CCCCCchhhhhHhhhCHHHHHHHHHcCCccCHHHHHHcCCcceecCHHHHHHHHHHH
Confidence 777889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhC-CHH-HHHHHHHHHhhhhchHHHHHHHHHHHHhhh--------HHHHHHhcCCCCCCCC
Q psy9494 237 AIQMSKL-SQS-MLADRATVLSECETCREEWMSERKHYIGIS--------FELKFLQKKKKAKNGH 292 (314)
Q Consensus 237 a~~la~~-~~~-~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~af~ekr~p~~~~~ 292 (314)
+++|++. +|. +..+|+.++........+.+..+....... ...+|++||+|.|.++
T Consensus 207 a~~i~~~~~p~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~~~~egi~af~~kr~p~~~~~ 272 (272)
T PRK06210 207 AEDLARNVSPASMAVIKRQLYEDAFQTLAEATARANREMHESLQRPDFIEGVASFLEKRPPRFPGL 272 (272)
T ss_pred HHHHHhcCCHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCCCCC
Confidence 9999985 888 999999998765444333332221111111 1279999999999864
No 32
>PRK06495 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=8.7e-50 Score=370.37 Aligned_cols=241 Identities=21% Similarity=0.282 Sum_probs=202.3
Q ss_pred hccccEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCC-C-chh
Q psy9494 12 RLVSSVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENP-D-TKL 89 (314)
Q Consensus 12 ~~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~-~-~~~ 89 (314)
++|+.|.++++++|++||||||+ .|++|.+|+.+|.++++++++|+++|+|||+|.|++||+|.|++++.... . ...
T Consensus 1 ~~~~~i~~~~~~~v~~itlnrp~-~Nal~~~~~~~l~~al~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~ 79 (257)
T PRK06495 1 MMMSQLKLEVSDHVAVVTLDNPP-VNALSRELRDELIAVFDEISERPDVRVVVLTGAGKVFCAGADLKGRPDVIKGPGDL 79 (257)
T ss_pred CCcceEEEEeeCCEEEEEECCCc-cccCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCcccCcCHHhHhhccCCchhH
Confidence 35678999999999999999998 59999999999999999999999999999999999999999999875321 1 111
Q ss_pred H---HHHHHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhcccccc
Q psy9494 90 F---DDFREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRT 164 (314)
Q Consensus 90 ~---~~~~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~ 164 (314)
. ..+.+.+.. ++||||||+|||+|+|||++|+++||+|||+++++|++||+++|
T Consensus 80 ~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G--------------------- 138 (257)
T PRK06495 80 RAHNRRTRECFHAIRECAKPVIAAVNGPALGAGLGLVASCDIIVASENAVFGLPEIDVG--------------------- 138 (257)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEECCeeehhHHHHHHhCCEEEecCCCEeeChhhccC---------------------
Confidence 1 112222332 89999999999999999999999999999999999999999999
Q ss_pred cccccccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHHhCC
Q psy9494 165 QLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLS 244 (314)
Q Consensus 165 ~~~~~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~ 244 (314)
+. |+++++++++|+.+|++|+++|++++|+||+++||||+++|++++.+++.+++++|++.|
T Consensus 139 ---------------l~---~~~~~l~~~~g~~~a~~lll~g~~~~a~eA~~~GLv~~vv~~~~~~~~a~~~a~~l~~~~ 200 (257)
T PRK06495 139 ---------------LA---GGGKHAMRLFGHSLTRRMMLTGYRVPAAELYRRGVIEACLPPEELMPEAMEIAREIASKS 200 (257)
T ss_pred ---------------cc---ccHHHHHHHhCHHHHHHHHHcCCeeCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhCC
Confidence 54 456789999999999999999999999999999999999999999999999999999999
Q ss_pred HH-HHHHHHHHHhhhhchHHHHHHHHHHHHhh--------hHHHHHHhcCCCCCCCC
Q psy9494 245 QS-MLADRATVLSECETCREEWMSERKHYIGI--------SFELKFLQKKKKAKNGH 292 (314)
Q Consensus 245 ~~-~~~~K~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~af~ekr~p~~~~~ 292 (314)
|. ++.+|+.++........+....+...... ....+|++||+|.|+++
T Consensus 201 ~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~d~~egi~af~~kr~p~~~~~ 257 (257)
T PRK06495 201 PLATRLAKDALNTIENMSLRDGYRYEQDITAKLAKTEDAKEAQRAFLEKRPPVFKGR 257 (257)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcChHHHHHHHHHhccCCCCCCCC
Confidence 99 99999999876544443333222111111 11269999999999874
No 33
>PRK06688 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.1e-49 Score=369.36 Aligned_cols=243 Identities=26% Similarity=0.376 Sum_probs=207.9
Q ss_pred cccEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCc--hhHH
Q psy9494 14 VSSVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDT--KLFD 91 (314)
Q Consensus 14 ~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~--~~~~ 91 (314)
...+.++++++|++|+||||++.|++|.+|+++|.++++++++|+++|+|||+|.|++||+|+|++++...... ....
T Consensus 4 ~~~i~~~~~~~v~~i~lnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~ 83 (259)
T PRK06688 4 VTDLLVELEDGVLTITINRPDKKNALTAAMYQALADALEAAATDPAVRVVVLTGAGRAFSAGGDIKDFPKAPPKPPDELA 83 (259)
T ss_pred CCceEEEEECCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCccCccCHHHHhccCcchHHHHH
Confidence 35688999999999999999999999999999999999999999999999999999999999999987643222 1122
Q ss_pred HHHHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhccccccccccc
Q psy9494 92 DFREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHS 169 (314)
Q Consensus 92 ~~~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~~~~ 169 (314)
.+.+.+.. ++||||||+|||+|+|||++|+++||+|||+++++|++||+++|
T Consensus 84 ~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G-------------------------- 137 (259)
T PRK06688 84 PVNRFLRAIAALPKPVVAAVNGPAVGVGVSLALACDLVYASESAKFSLPFAKLG-------------------------- 137 (259)
T ss_pred HHHHHHHHHHcCCCCEEEEECCeeecHHHHHHHhCCEEEecCCCEecCchhhcC--------------------------
Confidence 23333333 89999999999999999999999999999999999999999999
Q ss_pred ccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHHhCCHH-HH
Q psy9494 170 LRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQS-ML 248 (314)
Q Consensus 170 ~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~~~-~~ 248 (314)
++|++|+++++++++|+.+|++++++|++++|+||+++||||+++|++++.+++.+++++|+..||. ++
T Consensus 138 ----------~~p~~g~~~~l~~~~G~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~i~~~~~~a~~ 207 (259)
T PRK06688 138 ----------LCPDAGGSALLPRLIGRARAAEMLLLGEPLSAEEALRIGLVNRVVPAAELDAEADAQAAKLAAGPASALR 207 (259)
T ss_pred ----------CCCCcchhhHHHHHhhHHHHHHHHHhCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 7778899999999999999999999999999999999999999999999999999999999999999 99
Q ss_pred HHHHHHHhhhhchHHHHHHHHHHHHhh--------hHHHHHHhcCCCCCCCC
Q psy9494 249 ADRATVLSECETCREEWMSERKHYIGI--------SFELKFLQKKKKAKNGH 292 (314)
Q Consensus 249 ~~K~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~af~ekr~p~~~~~ 292 (314)
.+|+.++.......++.+..+...... ....+|++||+|.|++.
T Consensus 208 ~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~af~~~~~p~~~~~ 259 (259)
T PRK06688 208 YTKRAINAATLTELEEALAREAAGFGRLLRTPDFREGATAFIEKRKPDFTGF 259 (259)
T ss_pred HHHHHHHhhhhCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCCCCCC
Confidence 999999876554444333332221111 11269999999999763
No 34
>PRK07659 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=6.7e-50 Score=371.73 Aligned_cols=241 Identities=22% Similarity=0.263 Sum_probs=203.3
Q ss_pred cccEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCchh----
Q psy9494 14 VSSVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTKL---- 89 (314)
Q Consensus 14 ~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~---- 89 (314)
++.|.++++++|++||||||++.|++|.+|+.+|.++++++ .|+++|+|||+|.|++||+|.|++++........
T Consensus 5 ~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~-~d~~vrvvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~ 83 (260)
T PRK07659 5 MESVVVKYEGRVATIMLNRPEALNALDEPMLKELLQALKEV-AESSAHIVVLRGNGRGFSAGGDIKMMLSSNDESKFDGV 83 (260)
T ss_pred CceEEEEeeCCEEEEEeCCcccccCCCHHHHHHHHHHHHHh-cCCCeeEEEEECCCCCcccccCHHHHhhccCchhHHHH
Confidence 35689999999999999999999999999999999999999 5889999999999999999999998754222111
Q ss_pred HHHHHHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhccccccccc
Q psy9494 90 FDDFREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLK 167 (314)
Q Consensus 90 ~~~~~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~~ 167 (314)
...+.+.+.. .+||||||+|||+|+|||++|+++||+|||+++++|++||+++|
T Consensus 84 ~~~~~~~~~~l~~~~~pvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G------------------------ 139 (260)
T PRK07659 84 MNTISEIVVTLYTMPKLTISAIHGPAAGLGLSIALTADYVIADISAKLAMNFIGIG------------------------ 139 (260)
T ss_pred HHHHHHHHHHHHhCCCCEEEEecCceecHHHHHHHhCCEEEEcCCCEEcCchhhcC------------------------
Confidence 1122222222 89999999999999999999999999999999999999999999
Q ss_pred ccccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHHhCCHH-
Q psy9494 168 HSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQS- 246 (314)
Q Consensus 168 ~~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~~~- 246 (314)
++|++|++++|++++|+.+|++++++|+.++|+||+++||||+++ ++++.+++.+++++|++.||.
T Consensus 140 ------------l~p~~g~~~~L~~~vg~~~a~~l~ltg~~~~a~eA~~~Glv~~vv-~~~~~~~a~~~a~~l~~~~~~a 206 (260)
T PRK07659 140 ------------LIPDGGGHFFLQKRVGENKAKQIIWEGKKLSATEALDLGLIDEVI-GGDFQTAAKQKISEWLQKPLKA 206 (260)
T ss_pred ------------CCCCCchhhhHHHhcCHHHHHHHHHhCCccCHHHHHHcCChHHHh-hhHHHHHHHHHHHHHHhCCHHH
Confidence 777889999999999999999999999999999999999999999 788999999999999999999
Q ss_pred HHHHHHHHHhhhhchHHHHHHHHHHHHhh--------hHHHHHHhcCCCCCCCC
Q psy9494 247 MLADRATVLSECETCREEWMSERKHYIGI--------SFELKFLQKKKKAKNGH 292 (314)
Q Consensus 247 ~~~~K~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~af~ekr~p~~~~~ 292 (314)
++.+|+.++.......++....+...... ....+|++||+|.|+++
T Consensus 207 ~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~~~~egi~af~~kr~p~~~~~ 260 (260)
T PRK07659 207 MIETKQIYCELNRSQLEQVLQLEKRAQYAMRQTADHKEGIRAFLEKRLPVFKGE 260 (260)
T ss_pred HHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCHhHHHHHHHHhcCCCCCCCCC
Confidence 99999999876544333322222111111 11269999999999864
No 35
>PRK07511 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.1e-49 Score=369.83 Aligned_cols=240 Identities=21% Similarity=0.296 Sum_probs=204.6
Q ss_pred ccEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCC--Cch----
Q psy9494 15 SSVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENP--DTK---- 88 (314)
Q Consensus 15 ~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~--~~~---- 88 (314)
+.+.++++++|++|+||||++.|++|.+|+.+|.++++++++|+++|+|||+|.|++||+|.|++++.... ...
T Consensus 3 ~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~ 82 (260)
T PRK07511 3 AELLSRREGSTLVLTLSNPGARNALHPDMYAAGIEALNTAERDPSIRAVVLTGAGGFFCAGGNLNRLLENRAKPPSVQAA 82 (260)
T ss_pred CeeEEEeECCEEEEEECCcccccCCCHHHHHHHHHHHHHhccCCCeEEEEEECCCCCcccCcCHHHHhhcccccchhHHH
Confidence 45788999999999999999999999999999999999999999999999999999999999999875421 111
Q ss_pred hHHHHHHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhcccccccc
Q psy9494 89 LFDDFREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQL 166 (314)
Q Consensus 89 ~~~~~~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~ 166 (314)
....+.+++.. ++||||||+|||+|+|||++|+++||+|||+++++|++||+++|
T Consensus 83 ~~~~~~~~~~~l~~~~kpvIAav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~G----------------------- 139 (260)
T PRK07511 83 SIDGLHDWIRAIRAFPKPVIAAVEGAAAGAGFSLALACDLLVAARDAKFVMAYVKVG----------------------- 139 (260)
T ss_pred HHHHHHHHHHHHHcCCCCEEEEECCeeehHHHHHHHhCCEEEeeCCCEEeccccccC-----------------------
Confidence 11222333333 89999999999999999999999999999999999999999999
Q ss_pred cccccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHHhCCHH
Q psy9494 167 KHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQS 246 (314)
Q Consensus 167 ~~~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~~~ 246 (314)
++|++|+++++++++|+.++++|+++|++++|+||+++||||++++++++.+++.++++++++.||.
T Consensus 140 -------------l~p~~g~~~~l~~~vg~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~~~~~a~~~a~~l~~~~~~ 206 (260)
T PRK07511 140 -------------LTPDGGGSWFLARALPRQLATELLLEGKPISAERLHALGVVNRLAEPGQALAEALALADQLAAGSPN 206 (260)
T ss_pred -------------cCCCchHHHHHHHHhCHHHHHHHHHhCCCCCHHHHHHcCCccEeeCchHHHHHHHHHHHHHHhCCHH
Confidence 7788899999999999999999999999999999999999999999999999999999999999999
Q ss_pred -HHHHHHHHHhhhhchHHHHHHHHHHHHhh--------hHHHHHHhcCCCCCC
Q psy9494 247 -MLADRATVLSECETCREEWMSERKHYIGI--------SFELKFLQKKKKAKN 290 (314)
Q Consensus 247 -~~~~K~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~af~ekr~p~~~ 290 (314)
+..+|+.++........+....+...... ....+|++||+|.|+
T Consensus 207 ~~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~i~~f~~~r~~~~~ 259 (260)
T PRK07511 207 ALARIKSLIADAPEATLAAQLEAERDHFVASLHHADALEGIAAFLEKRAPDYK 259 (260)
T ss_pred HHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhccCCCCCC
Confidence 99999999876554433333222111111 112799999999985
No 36
>PRK05864 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.1e-49 Score=373.46 Aligned_cols=247 Identities=22% Similarity=0.292 Sum_probs=204.6
Q ss_pred hhhccccEEEEE-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCC---
Q psy9494 10 MLRLVSSVCTKK-ILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENP--- 85 (314)
Q Consensus 10 ~~~~~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~--- 85 (314)
|-..++.|.++. +++|++|+||||+++|++|.+|+.+|.++++++++|+++|+|||||.|++||+|+|++++....
T Consensus 4 ~~~~~~~v~~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vrvvVl~g~g~~FcaG~Dl~~~~~~~~~~ 83 (276)
T PRK05864 4 YRSTMSLVLVDHPRPEIALITLNRPERMNSMAFDVMVPLKEALAEVSYDNSVRVVVLTGAGRGFSSGADHKSAGVVPHVE 83 (276)
T ss_pred CCCCCCceEEeeecCCEEEEEecCCccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCeecCcchhhhhcccccc
Confidence 334566788887 7899999999999999999999999999999999999999999999999999999999864211
Q ss_pred ---Cchh----HHHHHHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhh
Q psy9494 86 ---DTKL----FDDFREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVL 156 (314)
Q Consensus 86 ---~~~~----~~~~~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~ 156 (314)
.... ...+.+.+.. ++||||||+|||+|+|||++|+++||+|||+++++|++||+++|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~G------------- 150 (276)
T PRK05864 84 GLTRPTYALRSMELLDDVILALRRLHQPVIAAVNGPAIGGGLCLALAADIRVASSSAYFRAAGINNG------------- 150 (276)
T ss_pred cccchhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehhHHHHHHhCCEEEeeCCCEecCcccccC-------------
Confidence 0010 1112222222 89999999999999999999999999999999999999999999
Q ss_pred hhcccccccccccccccccccccCCC-CchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHH
Q psy9494 157 YALHVPRTQLKHSLRDNLSRDLAIPT-CDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMT 235 (314)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~p-~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~ 235 (314)
++| +.|++++|++++|+.+|++++++|++++|+||+++||||++++++++.+++.+
T Consensus 151 -----------------------l~p~~~g~~~~l~~~vG~~~A~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~ 207 (276)
T PRK05864 151 -----------------------LTASELGLSYLLPRAIGSSRAFEIMLTGRDVDAEEAERIGLVSRQVPDEQLLDTCYA 207 (276)
T ss_pred -----------------------CCCCCcchheehHhhhCHHHHHHHHHcCCccCHHHHHHcCCcceeeCHHHHHHHHHH
Confidence 554 78889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCHH-HHHHHHHHHhhhhc-hHHHHHHHHHH---HH------hhhHHHHHHhcCCCCCCCC
Q psy9494 236 RAIQMSKLSQS-MLADRATVLSECET-CREEWMSERKH---YI------GISFELKFLQKKKKAKNGH 292 (314)
Q Consensus 236 ~a~~la~~~~~-~~~~K~~~~~~~~~-~~~~~~~~~~~---~~------~~~~~~af~ekr~p~~~~~ 292 (314)
++++|+..||. ++.+|+.++..... ...+....+.. .. ......+|++||+|.|++.
T Consensus 208 ~a~~la~~~p~a~~~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~d~~e~~~af~~kr~p~~~~~ 275 (276)
T PRK05864 208 IAARMAGFSRPGIELTKRTLWSGLDAASLEAHMQAEGLGQLFVRLLTANFEEAVAARAEKRPPVFTDD 275 (276)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHhccChhHHHHHHHHhccCCCCCCCC
Confidence 99999999999 99999999865432 23322222211 00 0111269999999999764
No 37
>PRK08260 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=9e-50 Score=377.55 Aligned_cols=245 Identities=24% Similarity=0.292 Sum_probs=204.5
Q ss_pred cccEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCC---C-----
Q psy9494 14 VSSVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDEN---P----- 85 (314)
Q Consensus 14 ~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~---~----- 85 (314)
++.|.++++++|++||||||++.|++|.+|+.+|.+++++++.|+++|+|||||.|++||+|+|++++... .
T Consensus 3 ~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~ 82 (296)
T PRK08260 3 YETIRYDVADGIATITLNRPDKLNAFTVTMARELIEAFDAADADDAVRAVIVTGAGRAFCAGADLSAGGNTFDLDAPRTP 82 (296)
T ss_pred cceEEEeeeCCEEEEEeCCCcccCCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCCeecCcChHHhhhcccccccccc
Confidence 45688999999999999999999999999999999999999999999999999999999999999986420 0
Q ss_pred -------C-chhHHHH----HHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccc
Q psy9494 86 -------D-TKLFDDF----REFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLS 151 (314)
Q Consensus 86 -------~-~~~~~~~----~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~ 151 (314)
. ......+ .+++.. .+||||||+|||+|+|||++|+++||+|||+++++|++||.++|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pkPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~G-------- 154 (296)
T PRK08260 83 VEADEEDRADPSDDGVRDGGGRVTLRIFDSLKPVIAAVNGPAVGVGATMTLAMDIRLASTAARFGFVFGRRG-------- 154 (296)
T ss_pred cccccccccchhHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHhHHHHHhCCEEEeeCCCEEecchhhcC--------
Confidence 0 0011111 122222 89999999999999999999999999999999999999999999
Q ss_pred cchhhhhcccccccccccccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHH
Q psy9494 152 SGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVG 231 (314)
Q Consensus 152 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~ 231 (314)
+.|++|++++|++++|..+|++++++|++++|+||+++||||+++|++++.+
T Consensus 155 ----------------------------l~p~~g~~~~l~r~vG~~~A~~llltg~~~~a~eA~~~GLv~~vv~~~~l~~ 206 (296)
T PRK08260 155 ----------------------------IVPEAASSWFLPRLVGLQTALEWVYSGRVFDAQEALDGGLVRSVHPPDELLP 206 (296)
T ss_pred ----------------------------cCCCcchhhhHHHhhCHHHHHHHHHcCCccCHHHHHHCCCceeecCHHHHHH
Confidence 7778999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhC-CHH-HHHHHHHHHhhhh--chHHHHHHHHHHHH-------hhhHHHHHHhcCCCCCCCCcC
Q psy9494 232 EAMTRAIQMSKL-SQS-MLADRATVLSECE--TCREEWMSERKHYI-------GISFELKFLQKKKKAKNGHLV 294 (314)
Q Consensus 232 ~a~~~a~~la~~-~~~-~~~~K~~~~~~~~--~~~~~~~~~~~~~~-------~~~~~~af~ekr~p~~~~~~~ 294 (314)
++.+++++|+.. +|. ++.+|+.++.... ........+..... ......+|++||+|.|+++..
T Consensus 207 ~a~~~a~~i~~~~~~~a~~~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~d~~egi~af~~kr~p~f~~~~~ 280 (296)
T PRK08260 207 AARALAREIADNTSPVSVALTRQMMWRMAGADHPMEAHRVDSRAIYSRGRSGDGKEGVSSFLEKRPAVFPGKVS 280 (296)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHccChhHHHHHHHHhcCCCCCCCCCCC
Confidence 999999999985 888 9999999987532 12222222211111 111126999999999999833
No 38
>PRK05674 gamma-carboxygeranoyl-CoA hydratase; Validated
Probab=100.00 E-value=1.3e-49 Score=371.13 Aligned_cols=242 Identities=17% Similarity=0.203 Sum_probs=201.3
Q ss_pred cccEEEEEe-CCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCC----ch
Q psy9494 14 VSSVCTKKI-LNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPD----TK 88 (314)
Q Consensus 14 ~~~v~~~~~-~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~----~~ 88 (314)
|+.+.++++ ++|++||||||++.|++|.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++..... ..
T Consensus 4 ~~~l~~~~~~~~v~~itlnrp~~~Nal~~~~~~el~~al~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~ 83 (265)
T PRK05674 4 FQTIELIRDPRGFATLWLSRADKNNAFNAQMIRELILALDQVQSDASLRFLLLRGRGRHFSAGADLAWMQQSADLDYNTN 83 (265)
T ss_pred cceEEEEEcCCCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCcccCcCHHHHhhcccccchhh
Confidence 677889885 7899999999999999999999999999999999999999999999999999999998743211 00
Q ss_pred --hHHHHHHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhcccccc
Q psy9494 89 --LFDDFREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRT 164 (314)
Q Consensus 89 --~~~~~~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~ 164 (314)
....+.+++.. ++||||||+|||+|+|||++|+++||+|||+++++|++||+++|
T Consensus 84 ~~~~~~~~~~~~~l~~~~kPvIaaV~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~G--------------------- 142 (265)
T PRK05674 84 LDDARELAELMYNLYRLKIPTLAVVQGAAFGGALGLISCCDMAIGADDAQFCLSEVRIG--------------------- 142 (265)
T ss_pred hHHHHHHHHHHHHHHcCCCCEEEEEcCEEEechhhHhhhcCEEEEeCCCEEeCcccccC---------------------
Confidence 11122233332 89999999999999999999999999999999999999999999
Q ss_pred cccccccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHHhCC
Q psy9494 165 QLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLS 244 (314)
Q Consensus 165 ~~~~~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~ 244 (314)
+.|+++++ ++++++|..+|++++++|+.++|+||+++||||+++|++++.+++.+++++|+..|
T Consensus 143 ---------------i~p~~~~~-~l~~~vG~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~ 206 (265)
T PRK05674 143 ---------------LAPAVISP-FVVKAIGERAARRYALTAERFDGRRARELGLLAESYPAAELEAQVEAWIANLLLNS 206 (265)
T ss_pred ---------------CCcchhHH-HHHHHhCHHHHHHHHHhCcccCHHHHHHCCCcceecCHHHHHHHHHHHHHHHHhcC
Confidence 66665554 58999999999999999999999999999999999999999999999999999999
Q ss_pred HH-HHHHHHHHHhhhhchHHHHH-HHHH-HH-------HhhhHHHHHHhcCCCCCCCC
Q psy9494 245 QS-MLADRATVLSECETCREEWM-SERK-HY-------IGISFELKFLQKKKKAKNGH 292 (314)
Q Consensus 245 ~~-~~~~K~~~~~~~~~~~~~~~-~~~~-~~-------~~~~~~~af~ekr~p~~~~~ 292 (314)
|. ++.+|+.++........+.. .++. .. .......+|++||+|.|.+.
T Consensus 207 p~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~e~~~af~~kr~p~~~~~ 264 (265)
T PRK05674 207 PQALRASKDLLREVGDGELSPALRRYCENAIARIRVSAEGQEGLRAFLEKRTPAWQTD 264 (265)
T ss_pred HHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHhcCHHHHHHHHHHHccCCCCCCCC
Confidence 99 99999999876554332221 1111 10 01111269999999999753
No 39
>PRK03580 carnitinyl-CoA dehydratase; Provisional
Probab=100.00 E-value=2.3e-49 Score=368.29 Aligned_cols=241 Identities=28% Similarity=0.355 Sum_probs=202.1
Q ss_pred ccEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCC-CCccccCCcccccCCCCc--hhHH
Q psy9494 15 SSVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQE-GNFCSGFDLHELDENPDT--KLFD 91 (314)
Q Consensus 15 ~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~--~~~~ 91 (314)
+.+.++++++|++||||||+ .|++|.+|+++|.+++++++.|++||+|||||.| ++||+|+|++++...... ....
T Consensus 3 ~~i~~~~~~~v~~itlnrp~-~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~ 81 (261)
T PRK03580 3 ESLHTTRNGSILEITLDRPK-ANAIDAKTSFAMGEVFLNFRDDPELRVAIITGAGEKFFSAGWDLKAAAEGEAPDADFGP 81 (261)
T ss_pred ceEEEEEECCEEEEEECCcc-ccCCCHHHHHHHHHHHHHHHhCCCcEEEEEEeCCCCceecccCHHHHhccCcchhhhhh
Confidence 35889999999999999996 5999999999999999999999999999999998 799999999987532211 1111
Q ss_pred HHHHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhccccccccccc
Q psy9494 92 DFREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHS 169 (314)
Q Consensus 92 ~~~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~~~~ 169 (314)
.....+.. .+||||||+|||+|+|||++|+++||+|||+++++|++||+++|
T Consensus 82 ~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G-------------------------- 135 (261)
T PRK03580 82 GGFAGLTEIFDLDKPVIAAVNGYAFGGGFELALAADFIVCADNASFALPEAKLG-------------------------- 135 (261)
T ss_pred hhhHHHHHHHhCCCCEEEEECCeeehHHHHHHHHCCEEEecCCCEEeCcccccC--------------------------
Confidence 11112222 89999999999999999999999999999999999999999999
Q ss_pred ccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHHhCCHH-HH
Q psy9494 170 LRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQS-ML 248 (314)
Q Consensus 170 ~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~~~-~~ 248 (314)
++|+.|+++++++++|+.+|++++++|++++|+||+++||||+++|++++.+++.+++++|+..||. ++
T Consensus 136 ----------~~p~~g~~~~l~~~vg~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~ 205 (261)
T PRK03580 136 ----------IVPDSGGVLRLPKRLPPAIANEMVMTGRRMDAEEALRWGIVNRVVPQAELMDRARELAQQLVNSAPLAIA 205 (261)
T ss_pred ----------cCCCccHHHHHHHHhCHHHHHHHHHhCCccCHHHHHHcCCCcEecCHhHHHHHHHHHHHHHHhCCHHHHH
Confidence 7778899999999999999999999999999999999999999999999999999999999999999 99
Q ss_pred HHHHHHHhhhhchHHHHHHHHH-----HH----H---hhhHHHHHHhcCCCCCCCC
Q psy9494 249 ADRATVLSECETCREEWMSERK-----HY----I---GISFELKFLQKKKKAKNGH 292 (314)
Q Consensus 249 ~~K~~~~~~~~~~~~~~~~~~~-----~~----~---~~~~~~af~ekr~p~~~~~ 292 (314)
.+|+.++........+.+..+. .. . ......+|++||+|.|+++
T Consensus 206 ~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~d~~e~~~af~ekr~~~~~~~ 261 (261)
T PRK03580 206 ALKEIYRETSEMPVEEAYRYIRSGVLKHYPSVLHSEDALEGPRAFAEKRDPVWKGR 261 (261)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHhhhHHHHHHHhcCccHHHHHHHHhcCCCCCCCCC
Confidence 9999998764443332222111 00 0 0111279999999999864
No 40
>PLN02888 enoyl-CoA hydratase
Probab=100.00 E-value=3e-49 Score=368.67 Aligned_cols=244 Identities=24% Similarity=0.323 Sum_probs=203.4
Q ss_pred ccccEEEEE-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCchhHH
Q psy9494 13 LVSSVCTKK-ILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTKLFD 91 (314)
Q Consensus 13 ~~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~ 91 (314)
..+.|.++. +++|++||||||++.|++|.+|+.+|.+++++++.|+++|+|||||.|++||+|+|++++..........
T Consensus 7 ~~~~i~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~ 86 (265)
T PLN02888 7 SENLILVPKSRNGIATITINRPKALNALTRPMMVELAAAFKRLDEDDSVKVIILTGSGRAFCSGVDLTAAEEVFKGDVKD 86 (265)
T ss_pred CCCeEEEEeccCCEEEEEEcCCCcccCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCcccCCCCHHHHHhhccchhhH
Confidence 345677775 7899999999999999999999999999999999999999999999999999999999764321111111
Q ss_pred HHHHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhccccccccccc
Q psy9494 92 DFREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHS 169 (314)
Q Consensus 92 ~~~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~~~~ 169 (314)
...+.+.. ++||||||+|||+|+|||++|+++||+|||+++++|++||.++|
T Consensus 87 ~~~~~~~~i~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G-------------------------- 140 (265)
T PLN02888 87 VETDPVAQMERCRKPIIGAINGFAITAGFEIALACDILVASRGAKFIDTHAKFG-------------------------- 140 (265)
T ss_pred HHHHHHHHHHhCCCCEEEEECCeeechHHHHHHhCCEEEecCCCEecCcccccc--------------------------
Confidence 11222222 89999999999999999999999999999999999999999999
Q ss_pred ccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHHhCCHH-HH
Q psy9494 170 LRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQS-ML 248 (314)
Q Consensus 170 ~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~~~-~~ 248 (314)
++|++|++++|++++|+.+|++++++|++++|+||+++||||++++++++.+++.+++++|++.+|. ++
T Consensus 141 ----------l~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~ 210 (265)
T PLN02888 141 ----------IFPSWGLSQKLSRIIGANRAREVSLTAMPLTAETAERWGLVNHVVEESELLKKAREVAEAIIKNNQGMVL 210 (265)
T ss_pred ----------CCCCccHhhHHHHHhCHHHHHHHHHhCCccCHHHHHHcCCccEeeChHHHHHHHHHHHHHHHhCCHHHHH
Confidence 7778899999999999999999999999999999999999999999999999999999999999999 99
Q ss_pred HHHHHHHhhhhchHHHHHHHHHHH-Hh---------hhHHHHHHhcCCCCCCCC
Q psy9494 249 ADRATVLSECETCREEWMSERKHY-IG---------ISFELKFLQKKKKAKNGH 292 (314)
Q Consensus 249 ~~K~~~~~~~~~~~~~~~~~~~~~-~~---------~~~~~af~ekr~p~~~~~ 292 (314)
.+|+.++.............+... .. .....+|++||+|....+
T Consensus 211 ~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~e~~~af~ekr~~~~~~~ 264 (265)
T PLN02888 211 RYKSVINDGLKLDLGHALQLEKERAHDYYNGMTKEQFQKMQEFIAGRSSKKPSK 264 (265)
T ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHhcCCCCCCCC
Confidence 999999876554433332222111 11 111279999999875443
No 41
>PRK08259 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.9e-49 Score=366.62 Aligned_cols=213 Identities=37% Similarity=0.594 Sum_probs=189.3
Q ss_pred cccEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCchhHHH-
Q psy9494 14 VSSVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTKLFDD- 92 (314)
Q Consensus 14 ~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~- 92 (314)
.+.|.++++++|++||||||++.|++|.+|+.+|.+++++++.|+++|+|||||.|++||+|.|++++...........
T Consensus 2 ~~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvltg~g~~FcaG~Dl~~~~~~~~~~~~~~~ 81 (254)
T PRK08259 2 SMSVRVERNGPVTTVILNRPEVRNAVDGPTAAALADAFRAFDADDAASVAVLWGAGGTFCAGADLKAVGTGRGNRLHPSG 81 (254)
T ss_pred CceEEEEEECCEEEEEecCCccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCccCCcChHHHhcccchhhhhhh
Confidence 3568899999999999999999999999999999999999999999999999999999999999998754221111100
Q ss_pred HHHHH--hcCCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhcccccccccccc
Q psy9494 93 FREFL--QKPAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSL 170 (314)
Q Consensus 93 ~~~~~--~~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~~~~~ 170 (314)
..... ...+||||||+|||+|+|||++|+++||+|||+++++|++||.++|
T Consensus 82 ~~~~~~~~~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G--------------------------- 134 (254)
T PRK08259 82 DGPMGPSRMRLSKPVIAAVSGYAVAGGLELALWCDLRVAEEDAVFGVFCRRWG--------------------------- 134 (254)
T ss_pred cchhhhHHhcCCCCEEEEECCEEEhHHHHHHHhCCEEEecCCCEecCcccccC---------------------------
Confidence 00001 1179999999999999999999999999999999999999999999
Q ss_pred cccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHHhCCHH-HHH
Q psy9494 171 RDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQS-MLA 249 (314)
Q Consensus 171 ~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~~~-~~~ 249 (314)
++|.+|++++|++++|+.+|++++++|+.++|+||+++||||+++|.+++.+++.+++++|++.||. ++.
T Consensus 135 ---------l~p~~g~~~~l~~~iG~~~a~~lll~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~ 205 (254)
T PRK08259 135 ---------VPLIDGGTVRLPRLIGHSRAMDLILTGRPVDADEALAIGLANRVVPKGQARAAAEELAAELAAFPQTCLRA 205 (254)
T ss_pred ---------CCCCccHHHHHHHHhCHHHHHHHHHcCCccCHHHHHHcCCCCEeeChhHHHHHHHHHHHHHHhCCHHHHHH
Confidence 7888899999999999999999999999999999999999999999999999999999999999999 999
Q ss_pred HHHHHHhhhhchH
Q psy9494 250 DRATVLSECETCR 262 (314)
Q Consensus 250 ~K~~~~~~~~~~~ 262 (314)
+|+.++.......
T Consensus 206 ~K~~~~~~~~~~~ 218 (254)
T PRK08259 206 DRLSALEQWGLPE 218 (254)
T ss_pred HHHHHHHhhcCCH
Confidence 9999987644433
No 42
>PRK09120 p-hydroxycinnamoyl CoA hydratase/lyase; Validated
Probab=100.00 E-value=3e-49 Score=370.51 Aligned_cols=217 Identities=21% Similarity=0.309 Sum_probs=193.4
Q ss_pred hhhccccEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCC--c
Q psy9494 10 MLRLVSSVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPD--T 87 (314)
Q Consensus 10 ~~~~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~--~ 87 (314)
|.+.|++|.++++++|++|+||||++.|++|.+|+.+|.+++++++.|+++|+|||||.|++||+|.|++++..... .
T Consensus 3 ~~~~~~~i~~~~~~~va~itlnrp~~~Nal~~~m~~el~~al~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~ 82 (275)
T PRK09120 3 YENRWDTVKVEVEDGIAWVTLNRPEKRNAMSPTLNREMIDVLDALEFDDDAGVLVLTGAGDAWSAGMDLKEYFRETDAQP 82 (275)
T ss_pred cccccccEEEEEECCEEEEEecCcccccCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCCCceecCcCHHHHhhccccch
Confidence 34457889999999999999999999999999999999999999999999999999999999999999998643111 1
Q ss_pred h-hHH----HHHHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhcc
Q psy9494 88 K-LFD----DFREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALH 160 (314)
Q Consensus 88 ~-~~~----~~~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~ 160 (314)
. ... ....++.. .+||||||+|||+|+|||++|+++||+|||+++++|++||+++|
T Consensus 83 ~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G----------------- 145 (275)
T PRK09120 83 EILQERIRREAYGWWRRLRWYQKPTIAMVNGWCFGGGFSPLVACDLAIAADEAQFGLSEINWG----------------- 145 (275)
T ss_pred hHHHHHHHHHHHHHHHHHHhCCCCEEEEEcCEEechhHHHHHhCCEEEEeCCcEecCCccccC-----------------
Confidence 1 011 11222222 89999999999999999999999999999999999999999999
Q ss_pred cccccccccccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHH
Q psy9494 161 VPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQM 240 (314)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~l 240 (314)
++|++|++++|++++|+.+|++++++|+.++|+||+++|||++++|++++.+++.+++++|
T Consensus 146 -------------------l~p~~g~~~~l~~~iG~~~a~~llltg~~~~A~eA~~~Glv~~vv~~~~l~~~a~~~a~~l 206 (275)
T PRK09120 146 -------------------IPPGGGVSKAMADTVGHRDALYYIMTGETFTGRKAAEMGLVNESVPLAQLRARTRELAAKL 206 (275)
T ss_pred -------------------CCCCcchHHHHHHHcCHHHHHHHHhcCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHH
Confidence 7788999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCHH-HHHHHHHHHhhhhchH
Q psy9494 241 SKLSQS-MLADRATVLSECETCR 262 (314)
Q Consensus 241 a~~~~~-~~~~K~~~~~~~~~~~ 262 (314)
+..||. ++.+|+.++.......
T Consensus 207 a~~~p~a~~~~K~~l~~~~~~~~ 229 (275)
T PRK09120 207 LEKNPVVLRAAKDGFKRVRELTW 229 (275)
T ss_pred HhCCHHHHHHHHHHHHHHHhCCH
Confidence 999999 9999999987655433
No 43
>PRK07468 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.3e-49 Score=368.45 Aligned_cols=241 Identities=20% Similarity=0.286 Sum_probs=198.9
Q ss_pred cccEEEEEe-CCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCC--C-ch-
Q psy9494 14 VSSVCTKKI-LNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENP--D-TK- 88 (314)
Q Consensus 14 ~~~v~~~~~-~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~--~-~~- 88 (314)
++.+.++++ ++|++|+||||++.|++|.+|+.+|.+++++++.|+++++|||||.|++||+|.|++++.... . ..
T Consensus 3 ~~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~ 82 (262)
T PRK07468 3 FETIRIAVDARGVATLTLNRPEKHNALSARMIAELTTAARRLAADAAVRVVVLTGAGKSFCAGGDLGWMRAQMTADRATR 82 (262)
T ss_pred cceEEEEEcCCcEEEEEEcCcccccCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCcccCCcCHHHHHhhcccchhhH
Confidence 456888885 689999999999999999999999999999999999999999999999999999999864311 1 11
Q ss_pred --hHHHHHHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhcccccc
Q psy9494 89 --LFDDFREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRT 164 (314)
Q Consensus 89 --~~~~~~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~ 164 (314)
....+..++.. .+||||||+|||+|+|||++|+++||+|||+++++|++||+++|
T Consensus 83 ~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~~~G--------------------- 141 (262)
T PRK07468 83 IEEARRLAMMLKALNDLPKPLIGRIQGQAFGGGVGLISVCDVAIAVSGARFGLTETRLG--------------------- 141 (262)
T ss_pred HHHHHHHHHHHHHHHcCCCCEEEEECCEEEhHHHHHHHhCCEEEEeCCCEEeCchhccC---------------------
Confidence 11112223332 89999999999999999999999999999999999999999999
Q ss_pred cccccccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHHhCC
Q psy9494 165 QLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLS 244 (314)
Q Consensus 165 ~~~~~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~ 244 (314)
+.|++|+++++ +++|..+|++|+++|++++|+||+++||||+++|.+++.+++.++++++++.|
T Consensus 142 ---------------l~p~~g~~~~~-~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~~~~~a~~l~~~~ 205 (262)
T PRK07468 142 ---------------LIPATISPYVV-ARMGEANARRVFMSARLFDAEEAVRLGLLSRVVPAERLDAAVEAEVTPYLSCA 205 (262)
T ss_pred ---------------CCcccchhhHH-hhccHHHHHHHHHhCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhcC
Confidence 66677788755 55999999999999999999999999999999999999999999999999999
Q ss_pred HH-HHHHHHHHHhhhhchHHHHHHHHHHHHhh--------hHHHHHHhcCCCCCCC
Q psy9494 245 QS-MLADRATVLSECETCREEWMSERKHYIGI--------SFELKFLQKKKKAKNG 291 (314)
Q Consensus 245 ~~-~~~~K~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~af~ekr~p~~~~ 291 (314)
|. ++.+|+.++.......+.....+...... ....+|++||+|.|.+
T Consensus 206 ~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~s~d~~e~~~af~~kr~~~~~~ 261 (262)
T PRK07468 206 PGAVAAAKALVRALGAPIDEAVIDATIEALADTWETEEAREGIAAFFDKRAPAWRG 261 (262)
T ss_pred HHHHHHHHHHHHhhhccChHHHHHHHHHHHHHHhcCHHHHHHHHHHHcCCCCCCCC
Confidence 99 99999998765333322222221111111 1126999999999976
No 44
>PRK11423 methylmalonyl-CoA decarboxylase; Provisional
Probab=100.00 E-value=2.6e-49 Score=368.24 Aligned_cols=243 Identities=21% Similarity=0.234 Sum_probs=202.5
Q ss_pred ccccEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcC--CCCccccCCcccccCCCCc--h
Q psy9494 13 LVSSVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQ--EGNFCSGFDLHELDENPDT--K 88 (314)
Q Consensus 13 ~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~--g~~F~aG~Dl~~~~~~~~~--~ 88 (314)
.++.+.++++++|++||||||++.|++|.+|+.+|.++++++++|+ +|+|||||. |++||+|.|++++...... .
T Consensus 2 ~~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~-v~~vvltg~~~~~~FcaG~Dl~~~~~~~~~~~~ 80 (261)
T PRK11423 2 SMQYVNVVTINKIATITFNNPAKRNALSKVLIDDLMQALSDLNRPE-IRVVILRAPSGSKVWSAGHDIHELPSGGRDPLS 80 (261)
T ss_pred CccceEEEeECCEEEEEEcCccccCCCCHHHHHHHHHHHHHHhcCC-ceEEEEECCCCCCeeECCcCHHHHhhccccHHH
Confidence 4667899999999999999999999999999999999999999987 999999986 3899999999987432111 1
Q ss_pred hHHHHHHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhcccccccc
Q psy9494 89 LFDDFREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQL 166 (314)
Q Consensus 89 ~~~~~~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~ 166 (314)
....+.+.+.. .+||||||+|||+|+|||++|+++||+|||+++++|++||+++|
T Consensus 81 ~~~~~~~l~~~i~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G----------------------- 137 (261)
T PRK11423 81 YDDPLRQILRMIQKFPKPVIAMVEGSVWGGAFELIMSCDLIIAASTSTFAMTPANLG----------------------- 137 (261)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEEecEEechHHHHHHhCCEEEecCCCEecCchhhcC-----------------------
Confidence 11222333333 89999999999999999999999999999999999999999999
Q ss_pred cccccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHHhCCHH
Q psy9494 167 KHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQS 246 (314)
Q Consensus 167 ~~~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~~~ 246 (314)
++|++|+++++++++|+.+|++++++|++++|+||+++||||+++|++++.+.+.+++++|++.+|.
T Consensus 138 -------------l~~~~g~~~~l~~~vg~~~a~~l~l~g~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~l~~~~~~ 204 (261)
T PRK11423 138 -------------VPYNLSGILNFTNDAGFHIVKEMFFTASPITAQRALAVGILNHVVEVEELEDFTLQMAHHISEKAPL 204 (261)
T ss_pred -------------CCCCccHHHHHHHHhHHHHHHHHHHcCCCcCHHHHHHcCCcCcccCHHHHHHHHHHHHHHHHhcCHH
Confidence 7778889999999999999999999999999999999999999999999999999999999999999
Q ss_pred -HHHHHHHHHhhhh-chH-HHHHHHH-HHH-------HhhhHHHHHHhcCCCCCCCC
Q psy9494 247 -MLADRATVLSECE-TCR-EEWMSER-KHY-------IGISFELKFLQKKKKAKNGH 292 (314)
Q Consensus 247 -~~~~K~~~~~~~~-~~~-~~~~~~~-~~~-------~~~~~~~af~ekr~p~~~~~ 292 (314)
++.+|+.++.... ... ......+ ... .......+|++||+|.|+++
T Consensus 205 a~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~eg~~af~~kr~p~~~~~ 261 (261)
T PRK11423 205 AIAVIKEQLRVLGEAHPMNPDEFERIQGLRRAVYDSEDYQEGMNAFLEKRKPVFVGH 261 (261)
T ss_pred HHHHHHHHHHhhcccCCcchHHHHHHHHHHHHHhCChhHHHHHHHHhccCCCCCCCC
Confidence 9999999975432 111 1211111 110 01111269999999999874
No 45
>PRK06143 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=4.3e-49 Score=365.85 Aligned_cols=238 Identities=21% Similarity=0.344 Sum_probs=198.0
Q ss_pred hccccEEEE-EeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCC-CCccccCCcccccCCCCch-
Q psy9494 12 RLVSSVCTK-KILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQE-GNFCSGFDLHELDENPDTK- 88 (314)
Q Consensus 12 ~~~~~v~~~-~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~- 88 (314)
+...++.++ .+++|++||||||++.|++|.+|+++|.+++++++.|+++|+|||||.| ++||+|.|++++.......
T Consensus 3 ~~~~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~ 82 (256)
T PRK06143 3 MLNAHAGVTRDDRGVATLTIRNAGSLNILGTPVILALTQALRWLAADPDVRVLVLRGAGEKAFIGGADIKEMATLDQASA 82 (256)
T ss_pred cccccceeeecCCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhcCCCcEEEEEEeCCCCcccCCcCHHHHhhcChhhH
Confidence 444567777 4688999999999999999999999999999999999999999999998 7999999999875422111
Q ss_pred --hHHHHHHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhcccccc
Q psy9494 89 --LFDDFREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRT 164 (314)
Q Consensus 89 --~~~~~~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~ 164 (314)
....+...+.. ++||||||+|||+|+|||++|+++||+|||+++++|++||+++|
T Consensus 83 ~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G--------------------- 141 (256)
T PRK06143 83 EAFISRLRDLCDAVRHFPVPVIARIPGWCLGGGLELAAACDLRIAAHDAQFGMPEVRVG--------------------- 141 (256)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEECCEEeehhHHHHHhCCEEEecCCCEEeCCccccC---------------------
Confidence 11122233333 89999999999999999999999999999999999999999999
Q ss_pred cccccccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHHhCC
Q psy9494 165 QLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLS 244 (314)
Q Consensus 165 ~~~~~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~ 244 (314)
+| ..++++++++++|+.+|++++++|+.++|+||+++||||+++|++++.+++.+++++|+..|
T Consensus 142 ---------------~p-~~~~~~~l~~~iG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~ 205 (256)
T PRK06143 142 ---------------IP-SVIHAALLPRLIGWARTRWLLLTGETIDAAQALAWGLVDRVVPLAELDAAVERLAASLAGCG 205 (256)
T ss_pred ---------------CC-CccHHHHHHHhcCHHHHHHHHHcCCcCCHHHHHHCCCcCeecCHHHHHHHHHHHHHHHHcCC
Confidence 74 56778999999999999999999999999999999999999999999999999999999999
Q ss_pred HH-HHHHHHHHHhhhhchHHHHHHHHHHHHhh--------hHHHHHHhcCC
Q psy9494 245 QS-MLADRATVLSECETCREEWMSERKHYIGI--------SFELKFLQKKK 286 (314)
Q Consensus 245 ~~-~~~~K~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~af~ekr~ 286 (314)
|. ++.+|+.++........+....+...... ....+|++||+
T Consensus 206 ~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~d~~e~~~af~ekr~ 256 (256)
T PRK06143 206 PQALRQQKRLLREWEDMPLDVAIDDSVAEFGAAFLTGEPQRHMAAFLNRKR 256 (256)
T ss_pred HHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHhhcC
Confidence 99 99999999876554443333222111111 11269999875
No 46
>PRK06072 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=6.4e-49 Score=362.97 Aligned_cols=236 Identities=23% Similarity=0.327 Sum_probs=197.4
Q ss_pred EEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCchhHHHHHHH
Q psy9494 17 VCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTKLFDDFREF 96 (314)
Q Consensus 17 v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~ 96 (314)
|.++++++|++||||||++.|++|.+|+++|.+++++++.|+++|+|||||.|++||+|.|++++...........+...
T Consensus 2 i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~a~~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~ 81 (248)
T PRK06072 2 IKVESREGYAIVTMSRPDKLNALNLEMRNEFISKLKQINADPKIRVVIVTGEGRAFCVGADLSEFAPDFAIDLRETFYPI 81 (248)
T ss_pred eEEEEECCEEEEEECCcccccCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCcccCcCHHHHhhhhHHHHHHHHHHH
Confidence 56788999999999999999999999999999999999999999999999999999999999987532111112222233
Q ss_pred Hhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhcccccccccccccccc
Q psy9494 97 LQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNL 174 (314)
Q Consensus 97 ~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 174 (314)
+.. ++||||||+|||+|+|||++|+++||+|||+++++|++||.++|
T Consensus 82 ~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~~~~~~G------------------------------- 130 (248)
T PRK06072 82 IREIRFSDKIYISAINGVTAGACIGIALSTDFKFASRDVKFVTAFQRLG------------------------------- 130 (248)
T ss_pred HHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEecchhhcC-------------------------------
Confidence 322 89999999999999999999999999999999999999999999
Q ss_pred cccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHHhCCHH-HHHHHHH
Q psy9494 175 SRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQS-MLADRAT 253 (314)
Q Consensus 175 ~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~~~-~~~~K~~ 253 (314)
++|+.|+++++++++|. ++++++++|++++|+||+++||||++ +++.+++.++|++|++.||. ++.+|+.
T Consensus 131 -----l~p~~g~~~~l~~~~g~-~a~~lll~g~~~~a~eA~~~Glv~~~---~~~~~~a~~~a~~la~~~~~a~~~~K~~ 201 (248)
T PRK06072 131 -----LASDTGVAYFLLKLTGQ-RFYEILVLGGEFTAEEAERWGLLKIS---EDPLSDAEEMANRISNGPFQSYIAAKRM 201 (248)
T ss_pred -----cCCCchHHHHHHHHhhH-HHHHHHHhCCccCHHHHHHCCCcccc---chHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 67788899999999996 89999999999999999999999963 46789999999999999999 9999999
Q ss_pred HHhhhhchHHHHHHHHHHHHhhh--------HHHHHHhcCCCCCCCC
Q psy9494 254 VLSECETCREEWMSERKHYIGIS--------FELKFLQKKKKAKNGH 292 (314)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~--------~~~af~ekr~p~~~~~ 292 (314)
++.......++....+....... ...+|++||+|.|.++
T Consensus 202 l~~~~~~~l~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~~~~~ 248 (248)
T PRK06072 202 INLVLYNDLEEFLEYESAIQGYLGKTEDFKEGISSFKEKREPKFKGI 248 (248)
T ss_pred HHHHhhcCHHHHHHHHHHHHHHHhCChhHHHHHHHHhcCCCCCCCCC
Confidence 98765444433332221111111 1269999999999874
No 47
>PRK07509 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.1e-48 Score=363.39 Aligned_cols=240 Identities=21% Similarity=0.326 Sum_probs=201.7
Q ss_pred ccccEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCch---h
Q psy9494 13 LVSSVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTK---L 89 (314)
Q Consensus 13 ~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~---~ 89 (314)
+++.+.++++++|++||||||++.|++|.+|+++|.+++++++.|+++|+|||||.|++||+|+|++++....... .
T Consensus 1 ~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~ 80 (262)
T PRK07509 1 MMDRVSVTIEDGIADVRLNRPDKMNALDFAMFEELIATIKRLKKDRGIRAVILSGEGGAFCAGLDVKSVASSPGNAVKLL 80 (262)
T ss_pred CCceEEEEeeCCEEEEEecCcccccCCCHHHHHHHHHHHHHHhhCCCCeEEEEECCCCCcCCCcCHHHHhcccchhhhhH
Confidence 3567899999999999999999999999999999999999999999999999999999999999999875422111 0
Q ss_pred HH-------HHHHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhcc
Q psy9494 90 FD-------DFREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALH 160 (314)
Q Consensus 90 ~~-------~~~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~ 160 (314)
.. .+...+.. ++||||||+|||+|+|||++|+++||+|||+++++|++||+++|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G----------------- 143 (262)
T PRK07509 81 FKRLPGNANLAQRVSLGWRRLPVPVIAALEGVCFGGGLQIALGADIRIAAPDTKLSIMEAKWG----------------- 143 (262)
T ss_pred hhhhHHHHHHHHHHHHHHHhCCCCEEEEECCeeecchHHHHHhCCEEEecCCCEeecchhccC-----------------
Confidence 00 01112211 89999999999999999999999999999999999999999999
Q ss_pred cccccccccccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHH
Q psy9494 161 VPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQM 240 (314)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~l 240 (314)
++|++|+++++++++|+.+|++++++|++++|+||+++||||++++ ++.+++.+++++|
T Consensus 144 -------------------l~p~~g~~~~l~~~~g~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~--~~~~~a~~~a~~l 202 (262)
T PRK07509 144 -------------------LVPDMAGTVSLRGLVRKDVARELTYTARVFSAEEALELGLVTHVSD--DPLAAALALAREI 202 (262)
T ss_pred -------------------CCCCchHHHHHHHHhCHHHHHHHHHcCCCcCHHHHHHcCChhhhhc--hHHHHHHHHHHHH
Confidence 7778899999999999999999999999999999999999999995 4788999999999
Q ss_pred HhCCHH-HHHHHHHHHhhhhchHHHHHHHHHHHHhh--------hHHHHHHhcCCCCCC
Q psy9494 241 SKLSQS-MLADRATVLSECETCREEWMSERKHYIGI--------SFELKFLQKKKKAKN 290 (314)
Q Consensus 241 a~~~~~-~~~~K~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~af~ekr~p~~~ 290 (314)
++.||. +..+|+.++........+....+...... ....+|+|||+|.|.
T Consensus 203 ~~~~~~~~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~e~~~af~ekr~p~~~ 261 (262)
T PRK07509 203 AQRSPDAIAAAKRLINRSWTASVRALLARESVEQIRLLLGKNQKIAVKAQMKKRAPKFL 261 (262)
T ss_pred HhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhcCCCCCCC
Confidence 999999 99999999876554433332222111111 112699999999986
No 48
>PLN02921 naphthoate synthase
Probab=100.00 E-value=1.3e-48 Score=374.50 Aligned_cols=248 Identities=22% Similarity=0.299 Sum_probs=204.9
Q ss_pred hHhhhccccEEEEE--eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCC-CCccccCCcccccCC
Q psy9494 8 RAMLRLVSSVCTKK--ILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQE-GNFCSGFDLHELDEN 84 (314)
Q Consensus 8 ~~~~~~~~~v~~~~--~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~ 84 (314)
......++.|.+++ +++|++|+||||++.|+||.+|+.+|.++++.++.|+++++|||||.| ++||+|+|++++...
T Consensus 58 ~~~~~~~~~i~~~~~~~~~Va~ItLnrP~~~Nal~~~~~~eL~~al~~~~~d~~vrvVVLtg~G~k~FcaG~Dl~~~~~~ 137 (327)
T PLN02921 58 DGSGKEFTDIIYEKAVGEGIAKITINRPERRNAFRPRTVKELQRAFNDARDDSSVGVIILTGKGTKAFCSGGDQAVRGKD 137 (327)
T ss_pred cCCccCCceEEEEEecCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEecCCCCceecCcChhhhhcc
Confidence 33334567788887 589999999999999999999999999999999999999999999999 899999999986432
Q ss_pred C--CchhHHH--HHHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhh
Q psy9494 85 P--DTKLFDD--FREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYA 158 (314)
Q Consensus 85 ~--~~~~~~~--~~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~ 158 (314)
. ....... ..+.+.. ++||||||+|||+|+|||++|+++||+|||+++++|++||.++|
T Consensus 138 ~~~~~~~~~~~~~~~l~~~l~~~~kPvIAaVnG~a~GGG~~LalacD~riA~~~A~f~~pe~~~G--------------- 202 (327)
T PLN02921 138 GYVGPDDAGRLNVLDLQIQIRRLPKPVIAMVAGYAVGGGHILHMVCDLTIAADNAVFGQTGPKVG--------------- 202 (327)
T ss_pred cccchhHHHHHHHHHHHHHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEEeCCCEEeCcccccC---------------
Confidence 1 1111111 1112222 89999999999999999999999999999999999999999999
Q ss_pred cccccccccccccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHH
Q psy9494 159 LHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAI 238 (314)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~ 238 (314)
+.|.++++++|++++|..+|++++++|+.++|+||+++||||+++|.+++.+++.++++
T Consensus 203 ---------------------l~p~~gg~~~L~rliG~~~A~ellltG~~~~A~eA~~~GLV~~vv~~~~l~~~a~~~a~ 261 (327)
T PLN02921 203 ---------------------SFDAGYGSSIMARLVGQKKAREMWFLARFYTASEALKMGLVNTVVPLDELEGETVKWCR 261 (327)
T ss_pred ---------------------CCCCccHHHHHHHHhCHHHHHHHHHcCCcCCHHHHHHCCCceEEeCHHHHHHHHHHHHH
Confidence 66677888999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCHH-HHHHHHHHHhhhhchHHHHHHHHHHHH--------hhhHHHHHHhcCCCCCCCC
Q psy9494 239 QMSKLSQS-MLADRATVLSECETCREEWMSERKHYI--------GISFELKFLQKKKKAKNGH 292 (314)
Q Consensus 239 ~la~~~~~-~~~~K~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~af~ekr~p~~~~~ 292 (314)
+|++.||. ++.+|+.++..... ......++.... ......+|+|||+|.|++.
T Consensus 262 ~la~~~p~al~~~K~~l~~~~~~-~~~~~~~~~~~~~~~~~s~d~~egi~Af~ekr~p~f~~~ 323 (327)
T PLN02921 262 EILRNSPTAIRVLKSALNAADDG-HAGLQELGGNATLLFYGSEEGNEGRTAYLEGRAPDFSKF 323 (327)
T ss_pred HHHccCHHHHHHHHHHHHHhhcc-hhHHHHHHHHHHHHHhcCHHHHHHHHHHhccCCCCCCCC
Confidence 99999999 99999999876432 222222211111 1111269999999999874
No 49
>PRK07260 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.2e-48 Score=362.10 Aligned_cols=237 Identities=16% Similarity=0.193 Sum_probs=200.3
Q ss_pred cccEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCC-c--hh-
Q psy9494 14 VSSVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPD-T--KL- 89 (314)
Q Consensus 14 ~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~-~--~~- 89 (314)
++++.++++++|++|+||||++.|++|.+|+.+|.+++++++.|+++++|||+|.|++||+|+|++++..... . ..
T Consensus 1 ~~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~ 80 (255)
T PRK07260 1 FEHIIYEVEDDLATLTLNRPEVSNGFNIPMCQEILEALRLAEEDPSVRFLLINANGKVFSVGGDLVEMKRAVDEDDVQSL 80 (255)
T ss_pred CCceEEEEECCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccccCHHHHHhhccccchhhH
Confidence 3568889999999999999999999999999999999999999999999999999999999999998753211 1 11
Q ss_pred ---HHHHHHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhcccccc
Q psy9494 90 ---FDDFREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRT 164 (314)
Q Consensus 90 ---~~~~~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~ 164 (314)
...+.+.+.. ++||||||+|||+|+|||++|+++||+|||+++++|++||+++|
T Consensus 81 ~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~~~G--------------------- 139 (255)
T PRK07260 81 VKIAELVNEISFAIKQLPKPVIMCVDGAVAGAAANMAVAADFCIASTKTKFIQAFVGVG--------------------- 139 (255)
T ss_pred HHHHHHHHHHHHHHHcCCCCEEEEecCeeehhhHHHHHhCCEEEEeCCCEEechHhhcC---------------------
Confidence 1112222222 89999999999999999999999999999999999999999999
Q ss_pred cccccccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHHhCC
Q psy9494 165 QLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLS 244 (314)
Q Consensus 165 ~~~~~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~ 244 (314)
++|+.|+++++++++|+.++++|+++|++++|+||+++||||+++|++++.+++.++++++++.+
T Consensus 140 ---------------l~p~~g~~~~l~~~vg~~~a~~l~l~g~~~sa~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~ 204 (255)
T PRK07260 140 ---------------LAPDAGGLFLLTRAIGLNRATHLAMTGEALTAEKALEYGFVYRVAESEKLEKTCEQLLKKLRRGS 204 (255)
T ss_pred ---------------CCCCCchhhhhHHhhCHHHHHHHHHhCCccCHHHHHHcCCcceecCHhHHHHHHHHHHHHHHcCC
Confidence 77788999999999999999999999999999999999999999999999999999999999999
Q ss_pred HH-HHHHHHHHHhhhhchHHHHHHHHHHHHh--------hhHHHHHHhcCC
Q psy9494 245 QS-MLADRATVLSECETCREEWMSERKHYIG--------ISFELKFLQKKK 286 (314)
Q Consensus 245 ~~-~~~~K~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~af~ekr~ 286 (314)
|. ++.+|+.++.......+.....+..... .....+|++||+
T Consensus 205 ~~a~~~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr~ 255 (255)
T PRK07260 205 SNSYAAIKSLVWESFFKGWEDYAKLELALQESLAFKEDFKEGVRAFSERRR 255 (255)
T ss_pred HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCC
Confidence 99 9999999987755444333222211111 111269999875
No 50
>PRK12478 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2e-48 Score=369.01 Aligned_cols=241 Identities=19% Similarity=0.227 Sum_probs=194.6
Q ss_pred cccEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCccc-ccC---C--CCc
Q psy9494 14 VSSVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHE-LDE---N--PDT 87 (314)
Q Consensus 14 ~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~-~~~---~--~~~ 87 (314)
++.+.++++++|++||||||+++|+||.+|+.+|.+++++++.|++||+|||||.|++||+|+||++ +.. . ...
T Consensus 4 ~~~v~~~~~~~Va~ItLnrP~~~NAl~~~~~~eL~~al~~~~~d~~vrvvVLtG~G~~FcaG~Dl~~~~~~~~~~~~~~~ 83 (298)
T PRK12478 4 FQTLLYTTAGPVATITLNRPEQLNTIVPPMPDEIEAAIGLAERDQDIKVIVLRGAGRAFSGGYDFGGGFQHWGEAMMTDG 83 (298)
T ss_pred ceEEEEeccCCEEEEEecCCcccCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccCcCccccccccchhccccc
Confidence 4578899999999999999999999999999999999999999999999999999999999999986 211 0 000
Q ss_pred --hhHHHH----------HHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeecccccc-cccccccccc
Q psy9494 88 --KLFDDF----------REFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRF-VYLKDSLLSS 152 (314)
Q Consensus 88 --~~~~~~----------~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~-G~~~~~~~~~ 152 (314)
.....+ ...+.. ++||||||+|||+|+|||++|+++||+|||+++++|++||+++ |
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~A~f~~pe~~l~G--------- 154 (298)
T PRK12478 84 RWDPGKDFAMVTARETGPTQKFMAIWRASKPVIAQVHGWCVGGASDYALCADIVIASDDAVIGTPYSRMWG--------- 154 (298)
T ss_pred ccCchhhhhhhhhhhcchHHHHHHHHhCCCCEEEEEccEEehhHHHHHHHCCEEEEcCCcEEecccccccc---------
Confidence 000011 111222 8999999999999999999999999999999999999999997 8
Q ss_pred chhhhhcccccccccccccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHH
Q psy9494 153 GVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGE 232 (314)
Q Consensus 153 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~ 232 (314)
+.+ ++++ .+++|..+|++|+++|++++|+||+++||||++||++++.++
T Consensus 155 ---------------------------~~~--~~~~--~~~vG~~~A~~llltg~~i~A~eA~~~GLV~~vv~~~~l~~~ 203 (298)
T PRK12478 155 ---------------------------AYL--TGMW--LYRLSLAKVKWHSLTGRPLTGVQAAEAELINEAVPFERLEAR 203 (298)
T ss_pred ---------------------------CCc--hhHH--HHHhhHHHHHHHHHcCCccCHHHHHHcCCcceecCHHHHHHH
Confidence 443 3333 356999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCHH-HHHHHHHHHhhhh-chHHHHHHHHHHHHhh----------------hHHHHHHhcCCCCCCCCcC
Q psy9494 233 AMTRAIQMSKLSQS-MLADRATVLSECE-TCREEWMSERKHYIGI----------------SFELKFLQKKKKAKNGHLV 294 (314)
Q Consensus 233 a~~~a~~la~~~~~-~~~~K~~~~~~~~-~~~~~~~~~~~~~~~~----------------~~~~af~ekr~p~~~~~~~ 294 (314)
+.+++++|+..||. ++.+|+.++.... ...++.+..+...... ....||+|||+|.|.+.-.
T Consensus 204 a~~~a~~la~~~p~a~~~~K~~l~~~~~~~~l~~~~~~e~~~~~~~~~s~d~~e~~~~~~~egv~Af~ekR~p~f~~~~~ 283 (298)
T PRK12478 204 VAEVATELARIPLSQLQAQKLIVNQAYENMGLASTQTLGGILDGLMRNTPDALEFIRTAETQGVRAAVERRDGPFGDYSQ 283 (298)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHhcCCcccccCc
Confidence 99999999999999 9999999987644 2222222111110000 1226999999999998633
No 51
>TIGR03189 dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hydratase. This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation.
Probab=100.00 E-value=2.4e-48 Score=360.05 Aligned_cols=236 Identities=18% Similarity=0.223 Sum_probs=191.6
Q ss_pred EEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCchhHHHHHHH
Q psy9494 17 VCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTKLFDDFREF 96 (314)
Q Consensus 17 v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~ 96 (314)
|.++++++|++||||||+ .|++|.+|+.+|.++++++++|+++|+|||||.|++||+|.|++++...........+.+.
T Consensus 3 v~~~~~~~v~~itlnrp~-~Nal~~~~~~~l~~~l~~~~~~~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~ 81 (251)
T TIGR03189 3 VWLERDGKLLRLRLARPK-ANIVDAAMIAALSAALGEHLEDSALRAVLLDAEGPHFSFGASVAEHMPDQCAAMLASLHKL 81 (251)
T ss_pred EEEEeeCCEEEEEeCCCC-cCCCCHHHHHHHHHHHHHHHcCCCceEEEEECCCCceecCcChhhhCchhHHHHHHHHHHH
Confidence 678889999999999997 5999999999999999999999999999999999999999999985321111111122223
Q ss_pred Hhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhcccccccccccccccc
Q psy9494 97 LQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNL 174 (314)
Q Consensus 97 ~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 174 (314)
+.. ++||||||+|||+|+|||++|+++||+|||+++++|++||+++|
T Consensus 82 ~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G------------------------------- 130 (251)
T TIGR03189 82 VIAMLDSPVPILVAVRGQCLGGGLEVAAAGNLMFAAPDAKLGQPEIVLG------------------------------- 130 (251)
T ss_pred HHHHHhCCCCEEEEecCeeeeHHHHHHHhCCEEEEcCCCEEeCchhhcC-------------------------------
Confidence 322 89999999999999999999999999999999999999999999
Q ss_pred cccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHH-HHHHHhCCHH-HHHHHH
Q psy9494 175 SRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTR-AIQMSKLSQS-MLADRA 252 (314)
Q Consensus 175 ~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~-a~~la~~~~~-~~~~K~ 252 (314)
+.|. +++++|++++|+.+|++++++|++++|+||+++|||++++++++ +++.++ +++|+..||. ++.+|+
T Consensus 131 -----l~p~-~~~~~l~~~vg~~~a~~l~ltg~~~~a~eA~~~Glv~~v~~~~~--~~a~~~~a~~la~~~p~a~~~~K~ 202 (251)
T TIGR03189 131 -----VFAP-AASCLLPERMGRVAAEDLLYSGRSIDGAEGARIGLANAVAEDPE--NAALAWFDEHPAKLSASSLRFAVR 202 (251)
T ss_pred -----CCCC-chHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHCCCcceecCcHH--HHHHHHHHHHHHhCCHHHHHHHHH
Confidence 5444 45789999999999999999999999999999999999998543 566666 6899999999 999999
Q ss_pred HHHhhhhchHHHHHH-HHHHHH--------hhhHHHHHHhcCCCCCCCC
Q psy9494 253 TVLSECETCREEWMS-ERKHYI--------GISFELKFLQKKKKAKNGH 292 (314)
Q Consensus 253 ~~~~~~~~~~~~~~~-~~~~~~--------~~~~~~af~ekr~p~~~~~ 292 (314)
.++.......++... .+.... ......+|++||+|.|.++
T Consensus 203 ~l~~~~~~~~~~~~~~~e~~~~~~~~~s~d~~eg~~af~ekr~p~~~~~ 251 (251)
T TIGR03189 203 AARLGMNERVKAKIAEVEALYLEELMATHDAVEGLNAFLEKRPALWEDR 251 (251)
T ss_pred HHHhhhcccHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhcCCCCCCCC
Confidence 998765443332211 111110 1111279999999999874
No 52
>PRK06190 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.4e-48 Score=361.58 Aligned_cols=241 Identities=23% Similarity=0.267 Sum_probs=203.0
Q ss_pred ccccEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCch-hHH
Q psy9494 13 LVSSVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTK-LFD 91 (314)
Q Consensus 13 ~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~-~~~ 91 (314)
.++.+.++++++|++|+||||++.|++|.+|+++|.+++++++.|+++|+|||||.|++||+|+|++++....... ...
T Consensus 2 ~~~~v~~~~~~~va~Itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~ 81 (258)
T PRK06190 2 TEPILLVETHDRVRTLTLNRPEARNALSAALRRALFAALAEADADDDVDVVVLTGADPAFCAGLDLKELGGDGSAYGAQD 81 (258)
T ss_pred CCceEEEEeeCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCccCCcCHHHHhcccchhhHHH
Confidence 3567899999999999999999999999999999999999999999999999999999999999999875432111 111
Q ss_pred HHHHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhccccccccccc
Q psy9494 92 DFREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHS 169 (314)
Q Consensus 92 ~~~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~~~~ 169 (314)
.+...+.. ++||||||+|||+|+|||++|+++||+|||+++++|++||.++|
T Consensus 82 ~~~~~~~~i~~~~kPvIAaV~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G-------------------------- 135 (258)
T PRK06190 82 ALPNPSPAWPAMRKPVIGAINGAAVTGGLELALACDILIASERARFADTHARVG-------------------------- 135 (258)
T ss_pred HHHHHHHHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEeCCCEEECcccccC--------------------------
Confidence 12223332 89999999999999999999999999999999999999999999
Q ss_pred ccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHHhCCHH-HH
Q psy9494 170 LRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQS-ML 248 (314)
Q Consensus 170 ~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~~~-~~ 248 (314)
++|++|+++++++++|+.+|++++++|++++|+||+++||||+++|++++.+++.+++++|++.||. ++
T Consensus 136 ----------l~p~~g~~~~l~r~vG~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~ 205 (258)
T PRK06190 136 ----------ILPGWGLSVRLPQKVGIGRARRMSLTGDFLDAADALRAGLVTEVVPHDELLPRARRLAASIAGNNPAAVR 205 (258)
T ss_pred ----------cCCCccHHHHHHHHhCHHHHHHHHHhCCccCHHHHHHcCCCeEecCHhHHHHHHHHHHHHHHcCCHHHHH
Confidence 7778899999999999999999999999999999999999999999999999999999999999999 99
Q ss_pred HHHHHHHhhhhchHHHHHHHHHHHHhhhHH---HHHHhcCCCCC
Q psy9494 249 ADRATVLSECETCREEWMSERKHYIGISFE---LKFLQKKKKAK 289 (314)
Q Consensus 249 ~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~---~af~ekr~p~~ 289 (314)
.+|+.++........+....+.......+. .+|++.|...+
T Consensus 206 ~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~~~~~~~~~~~~~ 249 (258)
T PRK06190 206 ALKASYDDGAAAQTGDALALEAEAARAHNRSVSPDGIAARREAV 249 (258)
T ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHHHHcCCChHHHHHHHHHH
Confidence 999999877655555444433332222222 25555544443
No 53
>PRK06023 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=4.2e-48 Score=357.96 Aligned_cols=207 Identities=22% Similarity=0.358 Sum_probs=186.6
Q ss_pred ccEEEEEeCC---EEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCC-c-hh
Q psy9494 15 SSVCTKKILN---ITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPD-T-KL 89 (314)
Q Consensus 15 ~~v~~~~~~~---v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~-~-~~ 89 (314)
+.|.++++++ |++||||||++.|++|.+|+++|.++++++++|+++|+|||||.|++||+|.|++++..... . ..
T Consensus 3 ~~i~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~ 82 (251)
T PRK06023 3 DHILVERPGAHPGVQVIRFNRPEKKNAITRAMYATMAKALKAADADDAIRAHVFLGTEGCFSAGNDMQDFLAAAMGGTSF 82 (251)
T ss_pred ceEEEEeecCcCcEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCeecCcCHHHHhhccccchhh
Confidence 4588888774 99999999999999999999999999999999999999999999999999999998753211 1 11
Q ss_pred HHHHHHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhccccccccc
Q psy9494 90 FDDFREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLK 167 (314)
Q Consensus 90 ~~~~~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~~ 167 (314)
...+.+++.. ++||||||+|||+|+|||++++++||||||+++++|++||.++|
T Consensus 83 ~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~la~acD~ria~~~a~f~~pe~~~G------------------------ 138 (251)
T PRK06023 83 GSEILDFLIALAEAEKPIVSGVDGLAIGIGTTIHLHCDLTFASPRSLFRTPFVDLA------------------------ 138 (251)
T ss_pred HHHHHHHHHHHHhCCCCEEEEeCCceecHHHHHHHhCCEEEEeCCCEecCcccccC------------------------
Confidence 2222333333 89999999999999999999999999999999999999999999
Q ss_pred ccccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHHhCCHH-
Q psy9494 168 HSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQS- 246 (314)
Q Consensus 168 ~~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~~~- 246 (314)
+.|++|+++++++++|+.+|++++++|+.++|+||+++|||++++|.+++.+++.+++++|+..||.
T Consensus 139 ------------l~p~~g~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a 206 (251)
T PRK06023 139 ------------LVPEAGSSLLAPRLMGHQRAFALLALGEGFSAEAAQEAGLIWKIVDEEAVEAETLKAAEELAAKPPQA 206 (251)
T ss_pred ------------CCCCchHHHHHHHHHhHHHHHHHHHhCCCCCHHHHHHcCCcceeeCHHHHHHHHHHHHHHHHhCCHHH
Confidence 7778899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhh
Q psy9494 247 MLADRATVLSE 257 (314)
Q Consensus 247 ~~~~K~~~~~~ 257 (314)
++.+|+.++..
T Consensus 207 ~~~~K~~l~~~ 217 (251)
T PRK06023 207 LQIARDLMRGP 217 (251)
T ss_pred HHHHHHHHHhc
Confidence 99999999764
No 54
>PRK07854 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=6e-48 Score=355.64 Aligned_cols=231 Identities=28% Similarity=0.419 Sum_probs=191.3
Q ss_pred EEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCchhHHHHHHH
Q psy9494 17 VCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTKLFDDFREF 96 (314)
Q Consensus 17 v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~ 96 (314)
+.++++++|++||||||++.|++|.+|+.+|.++++++++| ++|+|||||.|++||+|.|+++... .......+.+.
T Consensus 2 ~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~~-~vr~vvl~g~g~~F~aG~Dl~~~~~--~~~~~~~~~~~ 78 (243)
T PRK07854 2 IGVTRDGQVLTIELQRPERRNALNAELCEELREAVRKAVDE-SARAIVLTGQGTVFCAGADLSGDVY--ADDFPDALIEM 78 (243)
T ss_pred ceEEEeCCEEEEEeCCCccccCCCHHHHHHHHHHHHHHhcC-CceEEEEECCCCceecccCCccchh--HHHHHHHHHHH
Confidence 56788999999999999999999999999999999999965 8999999999999999999985321 11111222223
Q ss_pred Hhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhcccccccccccccccc
Q psy9494 97 LQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNL 174 (314)
Q Consensus 97 ~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 174 (314)
+.. ++||||||+|||+|+|||++|+++||+|||+++++|++||+++|
T Consensus 79 ~~~l~~~~kP~Iaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G------------------------------- 127 (243)
T PRK07854 79 LHAIDAAPVPVIAAINGPAIGAGLQLAMACDLRVVAPEAYFQFPVAKYG------------------------------- 127 (243)
T ss_pred HHHHHhCCCCEEEEecCcccccHHHHHHhCCEEEEcCCCEEeccccccc-------------------------------
Confidence 332 89999999999999999999999999999999999999999999
Q ss_pred cccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHHhCCHH-HHHHHHH
Q psy9494 175 SRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQS-MLADRAT 253 (314)
Q Consensus 175 ~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~~~-~~~~K~~ 253 (314)
++|++|++++|++++|+.+|++++++|++++|+||+++||||++++ + +++.+++++|++.||. +..+|+.
T Consensus 128 -----~~p~~g~~~~l~~~~G~~~a~~l~ltg~~~~a~eA~~~Glv~~v~~---~-~~a~~~a~~l~~~~~~a~~~~K~~ 198 (243)
T PRK07854 128 -----IALDNWTIRRLSSLVGGGRARAMLLGAEKLTAEQALATGMANRIGT---L-ADAQAWAAEIAGLAPLALQHAKRV 198 (243)
T ss_pred -----cCCCccHHHHHHHHhCHHHHHHHHHcCCCcCHHHHHHCCCcccccC---H-HHHHHHHHHHHhCCHHHHHHHHHH
Confidence 7778899999999999999999999999999999999999999975 3 3899999999999999 9999999
Q ss_pred HHhhhhchHHHHHHHHHHHHh--------hhHHHHHHhcCCCCCCCC
Q psy9494 254 VLSECETCREEWMSERKHYIG--------ISFELKFLQKKKKAKNGH 292 (314)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~--------~~~~~af~ekr~p~~~~~ 292 (314)
++.. ...++....+..... .....+|++||+|.|+++
T Consensus 199 l~~~--~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~~~~~ 243 (243)
T PRK07854 199 LNDD--GAIEEAWPAHKELFDKAWASQDAIEAQVARIEKRPPKFQGA 243 (243)
T ss_pred HHcc--CCHHHHHHHHHHHHHHHhcCchHHHHHHHHhCCCCCCCCCC
Confidence 9864 222222211111111 111269999999999763
No 55
>COG1024 CaiD Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]
Probab=100.00 E-value=5.7e-48 Score=357.87 Aligned_cols=239 Identities=29% Similarity=0.442 Sum_probs=201.0
Q ss_pred ccccEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccC-CCCch---
Q psy9494 13 LVSSVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDE-NPDTK--- 88 (314)
Q Consensus 13 ~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~-~~~~~--- 88 (314)
.++.+.++.+++|++||||||++.|++|.+|+.+|.+++++++.|+++|+|||||.|++||+|+|++++.. .....
T Consensus 3 ~~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vvltg~g~~FsaG~Dl~~~~~~~~~~~~~~ 82 (257)
T COG1024 3 TYETILVEREDGIAVITLNRPEKLNALNLEMLDELAEALDEAEADPDVRVVVLTGAGKAFSAGADLKELLSPEDGNAAEN 82 (257)
T ss_pred CCCeeEEEeeCCEEEEEecCcccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCceecccCHHHHhcccchhHHHH
Confidence 35678888889999999999999999999999999999999999999999999999999999999999874 11111
Q ss_pred hHHHHHHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhcccccccc
Q psy9494 89 LFDDFREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQL 166 (314)
Q Consensus 89 ~~~~~~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~ 166 (314)
........+.. ++||||||+|||+|+|||++|+++||+|||+++++|++||+++|
T Consensus 83 ~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~eLal~~D~ria~~~a~f~~pe~~iG----------------------- 139 (257)
T COG1024 83 LMQPGQDLLRALADLPKPVIAAVNGYALGGGLELALACDIRIAAEDAKFGLPEVNLG----------------------- 139 (257)
T ss_pred HHhHHHHHHHHHHhCCCCEEEEEcceEeechhhhhhcCCeEEecCCcEecCcccccc-----------------------
Confidence 11111122332 99999999999999999999999999999999999999999999
Q ss_pred cccccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCC-CchHHHHHHHHHHHHhCCH
Q psy9494 167 KHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNC-GTAVGEAMTRAIQMSKLSQ 245 (314)
Q Consensus 167 ~~~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~-~~l~~~a~~~a~~la~~~~ 245 (314)
+.|++|+++++++++|..+|++++++|+.++|+||+++|||+++++. +++++.+.+++++++. ||
T Consensus 140 -------------l~Pg~g~~~~l~r~~G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~a~-~~ 205 (257)
T COG1024 140 -------------LLPGDGGTQRLPRLLGRGRAKELLLTGEPISAAEALELGLVDEVVPDAEELLERALELARRLAA-PP 205 (257)
T ss_pred -------------cCCCCcHHHHHHHhcCHHHHHHHHHcCCcCCHHHHHHcCCcCeeeCCHHHHHHHHHHHHHHHcc-CH
Confidence 66666999999999999999999999999999999999999999996 7999999999999988 88
Q ss_pred H-HHHHHHHHHhhhhchHHHHHHHHHHHHhh--------hHHHHHHhcCCCCC
Q psy9494 246 S-MLADRATVLSECETCREEWMSERKHYIGI--------SFELKFLQKKKKAK 289 (314)
Q Consensus 246 ~-~~~~K~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~af~ekr~p~~ 289 (314)
. +..+|+.++.......++....+...... ....+|++ |+|.|
T Consensus 206 ~a~~~~k~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~eg~~a~~~-r~p~~ 257 (257)
T COG1024 206 LALAATKRLVRAALEADLAEALEAEALAFARLFSSEDFREGVRAFLE-RKPVF 257 (257)
T ss_pred HHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHhcChhHHHHHHHHHc-cCCCC
Confidence 8 99999999887554343333222221111 11269999 99887
No 56
>PRK08321 naphthoate synthase; Validated
Probab=100.00 E-value=8.4e-48 Score=365.31 Aligned_cols=243 Identities=20% Similarity=0.210 Sum_probs=200.6
Q ss_pred cccEEEEE--eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCC-------CCccccCCcccccCC
Q psy9494 14 VSSVCTKK--ILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQE-------GNFCSGFDLHELDEN 84 (314)
Q Consensus 14 ~~~v~~~~--~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g-------~~F~aG~Dl~~~~~~ 84 (314)
++.|.+++ +++|++||||||+++|++|.+|+.+|.+++++++.|+++|+|||||.| ++||+|+|++++...
T Consensus 22 ~~~i~~~~~~~~~va~itlnrP~~~Nal~~~~~~~l~~al~~~~~d~~vrvvVltg~g~~~~~~~~~FcaG~Dl~~~~~~ 101 (302)
T PRK08321 22 FTDITYHRAVDQGTVRIAFDRPEVRNAFRPHTVDELYRALDHARMSPDVGCVLLTGNGPSPKDGGWAFCSGGDQRIRGRD 101 (302)
T ss_pred ceeEEEEEecCCCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhhCCCcEEEEEeCCCCCCCCCCCeeecCcChhhhccc
Confidence 45688888 899999999999999999999999999999999999999999999998 599999999875321
Q ss_pred C------C--c--hhHH--H--HHHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEe-CCeEeeccccccccccc
Q psy9494 85 P------D--T--KLFD--D--FREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVE-ENVLMGFYNRRFVYLKD 147 (314)
Q Consensus 85 ~------~--~--~~~~--~--~~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~-~~a~f~~pe~~~G~~~~ 147 (314)
. . . .... . ..+.... ++||||||+|||+|+|||++|+++||+|||+ ++++|++||+++|
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pkP~IAaV~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~~G---- 177 (302)
T PRK08321 102 GYQYAEGDEADTVDPARAGRLHILEVQRLIRFMPKVVIAVVPGWAAGGGHSLHVVCDLTLASREHARFKQTDADVG---- 177 (302)
T ss_pred cccccccccccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEcCeeehHHHHHHHhCCEEEEecCCCEEECCccccc----
Confidence 0 0 0 0000 0 1112221 8999999999999999999999999999999 6899999999999
Q ss_pred cccccchhhhhcccccccccccccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCC
Q psy9494 148 SLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCG 227 (314)
Q Consensus 148 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~ 227 (314)
+.|+++++++|++++|+.+|++++++|+.++|+||+++|||++++|++
T Consensus 178 --------------------------------l~p~~~~~~~L~r~vG~~~A~~l~ltG~~~~A~eA~~~GLv~~vv~~~ 225 (302)
T PRK08321 178 --------------------------------SFDGGYGSAYLARQVGQKFAREIFFLGRTYSAEEAHDMGAVNAVVPHA 225 (302)
T ss_pred --------------------------------cCCCchHHHHHHHHhCHHHHHHHHHcCCccCHHHHHHCCCceEeeCHH
Confidence 666788889999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHhCCHH-HHHHHHHHHhhhhchHHHHHHHHHHHH-------hhhHHHHHHhcCCCCCCCC
Q psy9494 228 TAVGEAMTRAIQMSKLSQS-MLADRATVLSECETCREEWMSERKHYI-------GISFELKFLQKKKKAKNGH 292 (314)
Q Consensus 228 ~l~~~a~~~a~~la~~~~~-~~~~K~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~af~ekr~p~~~~~ 292 (314)
++.+++.+++++|++.||. ++.+|+.++............+..... ......+|++||+|.|+++
T Consensus 226 ~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~e~~~~~~~~~~~d~~egi~af~ekr~p~~~~~ 298 (302)
T PRK08321 226 ELETEALEWAREINGKSPTAMRMLKYAFNLTDDGLVGQQLFAGEATRLAYMTDEAQEGRDAFLEKRDPDWSDF 298 (302)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCHHHHHHHHHHhccCCCCCCCC
Confidence 9999999999999999999 999999997654332222222211110 0111269999999999886
No 57
>PRK07938 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=5.6e-48 Score=357.04 Aligned_cols=228 Identities=17% Similarity=0.196 Sum_probs=191.3
Q ss_pred EEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCchh----HHHHHH
Q psy9494 20 KKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTKL----FDDFRE 95 (314)
Q Consensus 20 ~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~----~~~~~~ 95 (314)
+++++|++||||||++ |++|.+|+.+|.+++++++.|+++|+|||||.|++||+|+|++++........ ...+.+
T Consensus 7 ~~~~~v~~itlnrp~~-Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~G~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~ 85 (249)
T PRK07938 7 TPEPGIAEVTVDYPPV-NALPSAGWFALADAITAAGADPDTRVVVLRAEGRGFNAGVDIKELQATPGFTALIDANRGCFA 85 (249)
T ss_pred ccCCCEEEEEECCCCc-ccCCHHHHHHHHHHHHHhhcCCCeEEEEEECCCCceecCcCHHHHhhccchhHHHHHHHHHHH
Confidence 4578999999999985 99999999999999999999999999999999999999999998754221111 111222
Q ss_pred HHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhccccccccccccccc
Q psy9494 96 FLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDN 173 (314)
Q Consensus 96 ~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 173 (314)
.+.. ++||||||+|||+|+|||++|+++||+||++++++|++||+++|
T Consensus 86 ~~~~i~~~~kPvIAav~G~a~GgG~~Lal~cD~ria~~~a~f~~pe~~~G------------------------------ 135 (249)
T PRK07938 86 AFRAVYECAVPVIAAVHGFCLGGGIGLVGNADVIVASDDATFGLPEVDRG------------------------------ 135 (249)
T ss_pred HHHHHHhCCCCEEEEEcCEEeehHHHHHHhCCEEEEeCCCEeeCccceec------------------------------
Confidence 3332 89999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHHhCCHH-HHHHHH
Q psy9494 174 LSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQS-MLADRA 252 (314)
Q Consensus 174 ~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~~~-~~~~K~ 252 (314)
++ |++++|++++|+.+|++++++|++++|+||+++||||+++|++++++++.+++++|++.||. ++.+|+
T Consensus 136 ------~~---g~~~~l~~~vg~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~ 206 (249)
T PRK07938 136 ------AL---GAATHLQRLVPQHLMRALFFTAATITAAELHHFGSVEEVVPRDQLDEAALEVARKIAAKDTRVIRAAKE 206 (249)
T ss_pred ------Cc---hhHHHHHHhcCHHHHHHHHHhCCcCCHHHHHHCCCccEEeCHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 53 56778999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred HHHhhhhchHHHHHHHHHHHHhhh--------HHHHHHhcCCC
Q psy9494 253 TVLSECETCREEWMSERKHYIGIS--------FELKFLQKKKK 287 (314)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~--------~~~af~ekr~p 287 (314)
.++........+.+..+....... ...+|+|||+|
T Consensus 207 ~l~~~~~~~l~~~~~~e~~~~~~~~~~~d~~eg~~af~ekr~p 249 (249)
T PRK07938 207 ALNGIDPQDVERSYRWEQGFTFELNLAGVSDEHRDAFVEKRKA 249 (249)
T ss_pred HHHhhccCCHHHHHHHHHHHHHHHhcCccHHHHHHHHHhcCCC
Confidence 998765444333333222211111 11699999987
No 58
>PRK05870 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.8e-48 Score=357.85 Aligned_cols=213 Identities=23% Similarity=0.319 Sum_probs=189.4
Q ss_pred cccEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCch---hH
Q psy9494 14 VSSVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTK---LF 90 (314)
Q Consensus 14 ~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~---~~ 90 (314)
++.+.++++++|++|+||||++.|++|.+|+++|.++++++++|+++|+|||||.|++||+|+|++++....... ..
T Consensus 2 ~~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~ 81 (249)
T PRK05870 2 MDPVLLDVDDGVALITVNDPDRRNAVTAEMSAQLRAAVAAAEADPDVHALVVTGAGKAFCAGADLTALGAAPGRPAEDGL 81 (249)
T ss_pred CccEEEEccCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCeecCcChHHHhcccccchHHHH
Confidence 456888999999999999999999999999999999999999999999999999999999999999876432211 11
Q ss_pred HHHHHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhcccccccccc
Q psy9494 91 DDFREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKH 168 (314)
Q Consensus 91 ~~~~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~~~ 168 (314)
..+.+.+.. ++||||||+|||+|+|||++|+++||+|||+++++|++||+++|
T Consensus 82 ~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G------------------------- 136 (249)
T PRK05870 82 RRIYDGFLAVASCPLPTIAAVNGAAVGAGLNLALAADVRIAGPKALFDARFQKLG------------------------- 136 (249)
T ss_pred HHHHHHHHHHHhCCCCEEEEECCEeEchhHHHHHhCCEEEEcCCCEEeCcccccC-------------------------
Confidence 222222222 89999999999999999999999999999999999999999999
Q ss_pred cccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHHhCCHH-H
Q psy9494 169 SLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQS-M 247 (314)
Q Consensus 169 ~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~~~-~ 247 (314)
++|++|+++++++++|+.+|++++++|++++|+||+++||||+++ +++.+++.+++++|+..||. +
T Consensus 137 -----------~~p~~g~~~~l~~~~G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv--~~l~~~a~~~a~~la~~~~~a~ 203 (249)
T PRK05870 137 -----------LHPGGGATWMLQRAVGPQVARAALLFGMRFDAEAAVRHGLALMVA--DDPVAAALELAAGPAAAPRELV 203 (249)
T ss_pred -----------cCCCCcceeeHHhhhCHHHHHHHHHhCCccCHHHHHHcCCHHHHH--hhHHHHHHHHHHHHHhCCHHHH
Confidence 777889999999999999999999999999999999999999999 68999999999999999999 9
Q ss_pred HHHHHHHHhhhh-chHHH
Q psy9494 248 LADRATVLSECE-TCREE 264 (314)
Q Consensus 248 ~~~K~~~~~~~~-~~~~~ 264 (314)
+.+|+.++.... ...++
T Consensus 204 ~~~K~~~~~~~~~~~l~~ 221 (249)
T PRK05870 204 LATKASMRATASLAQHAA 221 (249)
T ss_pred HHHHHHHHhccccCCHHH
Confidence 999999987654 44333
No 59
>PRK07827 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.6e-47 Score=354.16 Aligned_cols=238 Identities=18% Similarity=0.217 Sum_probs=198.5
Q ss_pred cccEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCC-C-ch---
Q psy9494 14 VSSVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENP-D-TK--- 88 (314)
Q Consensus 14 ~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~-~-~~--- 88 (314)
.+.+.++++++|++|+||||++.|++|.+|+.+|.+++++++.|+++|+|||||.|++||+|.|++++.... + ..
T Consensus 5 ~~~i~~~~~~~v~~i~lnrp~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~ 84 (260)
T PRK07827 5 DTLVRYAVDGGVATLTLDSPHNRNALSARLVAQLHDGLRAAAADPAVRAVVLTHTGGTFCAGADLSEAGGGGGDPYDAAV 84 (260)
T ss_pred CcceEEEeeCCEEEEEEcCccccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcCCCCccCCcChHHHhhcccCchhHHH
Confidence 346788899999999999999999999999999999999999999999999999999999999999875421 1 11
Q ss_pred -hHHHHHHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhccccccc
Q psy9494 89 -LFDDFREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQ 165 (314)
Q Consensus 89 -~~~~~~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~ 165 (314)
....+.+.+.. .+||||||+|||+|+|||++++++||+|||+++++|++||+++|
T Consensus 85 ~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G---------------------- 142 (260)
T PRK07827 85 ARAREMTALLRAIVELPKPVIAAIDGHVRAGGFGLVGACDIVVAGPESTFALTEARIG---------------------- 142 (260)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEEcCeeecchhhHHHhCCEEEEcCCCEEeCcccccC----------------------
Confidence 11222233333 89999999999999999999999999999999999999999999
Q ss_pred ccccccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHHhCCH
Q psy9494 166 LKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQ 245 (314)
Q Consensus 166 ~~~~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~~ 245 (314)
+.|++|+++++++++| .++++++++|++++|+||+++||||++++ ++.+.+.+++++|++.||
T Consensus 143 --------------l~p~~g~~~~l~~l~~-~~a~~l~l~g~~~~a~eA~~~Glv~~v~~--~l~~~a~~~a~~la~~~~ 205 (260)
T PRK07827 143 --------------VAPAIISLTLLPRLSP-RAAARYYLTGEKFGAAEAARIGLVTAAAD--DVDAAVAALLADLRRGSP 205 (260)
T ss_pred --------------CCCCcccchhHHhhhH-HHHHHHHHhCCccCHHHHHHcCCcccchH--HHHHHHHHHHHHHHhCCH
Confidence 7778899999998765 68999999999999999999999999974 599999999999999999
Q ss_pred H-HHHHHHHHHhhhhchHHHHHHHHHHHHhh--------hHHHHHHhcCCCCCC
Q psy9494 246 S-MLADRATVLSECETCREEWMSERKHYIGI--------SFELKFLQKKKKAKN 290 (314)
Q Consensus 246 ~-~~~~K~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~af~ekr~p~~~ 290 (314)
. ++.+|+.++.............+...... ....+|++||+|.|+
T Consensus 206 ~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~kr~p~~~ 259 (260)
T PRK07827 206 QGLAESKALTTAAVLAGFDRDAEELTEESARLFVSDEAREGMTAFLQKRPPRWA 259 (260)
T ss_pred HHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhcCCCCCCC
Confidence 9 99999999877554433332222111111 112699999999985
No 60
>PRK07110 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=100.00 E-value=5.3e-47 Score=350.38 Aligned_cols=220 Identities=16% Similarity=0.195 Sum_probs=195.7
Q ss_pred hccccEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCch-hH
Q psy9494 12 RLVSSVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTK-LF 90 (314)
Q Consensus 12 ~~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~-~~ 90 (314)
++++.+.++++++|++|+||||++.|++|.+|+.+|.+++++++.|+++|+|||||.|++||+|.|++++....... ..
T Consensus 2 ~~~~~~~~~~~~~v~~i~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~ 81 (249)
T PRK07110 2 MMKVVELREVEEGIAQVTMQDRVNKNAFSDELCDQLHEAFDTIAQDPRYKVVILTGYPNYFATGGTQEGLLSLQTGKGTF 81 (249)
T ss_pred CCCceEEEEeeCCEEEEEecCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCeeCCcChHHHhhccchhhhH
Confidence 46778899999999999999999999999999999999999999999999999999999999999999875432211 11
Q ss_pred HHHHHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhcccccccccc
Q psy9494 91 DDFREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKH 168 (314)
Q Consensus 91 ~~~~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~~~ 168 (314)
.. .+.+.. ++||||||+|||+|+|||++|+++||+||++++++|++||.++|
T Consensus 82 ~~-~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G------------------------- 135 (249)
T PRK07110 82 TE-ANLYSLALNCPIPVIAAMQGHAIGGGLVLGLYADIVVLSRESVYTANFMKYG------------------------- 135 (249)
T ss_pred hh-HHHHHHHHcCCCCEEEEecCceechHHHHHHhCCEEEEeCCCEecCchhccC-------------------------
Confidence 11 122222 89999999999999999999999999999999999999999999
Q ss_pred cccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHHhCCHH-H
Q psy9494 169 SLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQS-M 247 (314)
Q Consensus 169 ~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~~~-~ 247 (314)
+.|+.|+++++++++|+.+|++++++|++++|+||+++|||+++++++++.+++.++++++++.||. +
T Consensus 136 -----------l~p~~g~~~~l~~~~g~~~a~~llltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~ 204 (249)
T PRK07110 136 -----------FTPGMGATAILPEKLGLALGQEMLLTARYYRGAELKKRGVPFPVLPRAEVLEKALELARSLAEKPRHSL 204 (249)
T ss_pred -----------CCCCchHHHHHHHHhCHHHHHHHHHcCCccCHHHHHHcCCCeEEeChHHHHHHHHHHHHHHHhCCHHHH
Confidence 7778889999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred HHHHHHHHhhhhchHHHHHHH
Q psy9494 248 LADRATVLSECETCREEWMSE 268 (314)
Q Consensus 248 ~~~K~~~~~~~~~~~~~~~~~ 268 (314)
+.+|+.++........+....
T Consensus 205 ~~~K~~l~~~~~~~l~~~~~~ 225 (249)
T PRK07110 205 VLLKDHLVADRRRRLPEVIEQ 225 (249)
T ss_pred HHHHHHHHHhhhccHHHHHHH
Confidence 999999987766554444433
No 61
>PF00378 ECH: Enoyl-CoA hydratase/isomerase family; InterPro: IPR001753 The crotonase superfamily is comprised of mechanistically diverse proteins that share a conserved trimeric quaternary structure (sometimes a hexamer consisting of a dimer of trimers), the core of which consists of 4 turns of a (beta/beta/alpha)n superhelix. Some enzymes in the superfamily have been shown to display dehalogenase, hydratase, and isomerase activities, while others have been implicated in carbon-carbon bond formation and cleavage as well as the hydrolysis of thioesters []. However, these different enzymes share the need to stabilise an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two structurally conserved peptidic NH groups that provide hydrogen bonds to the carbonyl moieties of the acyl-CoA substrates and form an "oxyanion hole". The CoA thioester derivatives bind in a characteristic hooked shape and a conserved tunnel binds the pantetheine group of CoA, which links the 3'-phosphate ADP binding site to the site of reaction []. Enzymes in the crotonase superfamily include: Enoyl-CoA hydratase (crotonase; 4.2.1.17 from EC), which catalyses the hydratation of 2-trans-enoyl-CoA into 3-hydroxyacyl-CoA []. 3-2trans-enoyl-CoA isomerase (or dodecenoyl-CoA isomerise; 5.3.3.8 from EC), which shifts the 3-double bond of the intermediates of unsaturated fatty acid oxidation to the 2-trans position []. 3-hydroxbutyryl-CoA dehydratase (crotonase; 4.2.1.55 from EC), a bacterial enzyme involved in the butyrate/butanol-producing pathway. 4-Chlorobenzoyl-CoA dehalogenase (3.8.1.6 from EC), a Pseudomonas enzyme which catalyses the conversion of 4-chlorobenzoate-CoA to 4-hydroxybenzoate-CoA []. Dienoyl-CoA isomerise, which catalyses the isomerisation of 3-trans,5-cis-dienoyl-CoA to 2-trans,4-trans-dienoyl-CoA []. Naphthoate synthase (MenB, or DHNA synthetase; 4.1.3.36 from EC), a bacterial enzyme involved in the biosynthesis of menaquinone (vitamin K2) []. Carnitine racemase (gene caiD), which catalyses the reversible conversion of crotonobetaine to L-carnitine in Escherichia coli []. Methylmalonyl CoA decarboxylase (MMCD; 4.1.1.41 from EC), which has a hexameric structure (dimer of trimers) []. Carboxymethylproline synthase (CarB), which is involved in carbapenem biosynthesis []. 6-oxo camphor hydrolase, which catalyses the desymmetrisation of bicyclic beta-diketones to optically active keto acids []. The alpha subunit of fatty oxidation complex, a multi-enzyme complex that catalyses the last three reactions in the fatty acid beta-oxidation cycle []. AUH protein, a bifunctional RNA-binding homologue of enoyl-CoA hydratase []. This entry represents the core domain found in crotonase superfamily members.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2VRE_B 3RSI_A 1HZD_F 2ZQR_E 2ZQQ_D 3R9S_C 1O8U_E 1SZO_C 3MOY_A 2UZF_A ....
Probab=100.00 E-value=3.5e-47 Score=349.37 Aligned_cols=214 Identities=33% Similarity=0.489 Sum_probs=191.2
Q ss_pred EEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCc---hhHHHHH
Q psy9494 18 CTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDT---KLFDDFR 94 (314)
Q Consensus 18 ~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~---~~~~~~~ 94 (314)
+++.+++|++|+||||++.|++|.+++.+|.++++.++.|+++|+||++|.|++||+|.|++++...... .....+.
T Consensus 1 ~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvv~~~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~ 80 (245)
T PF00378_consen 1 KYEIEDGVATITLNRPEKRNALNPEMLDELEEALDEAEADPDVKVVVISGGGKAFCAGADLKEFLNSDEEEAREFFRRFQ 80 (245)
T ss_dssp EEEEETTEEEEEEECGGGTTEBSHHHHHHHHHHHHHHHHSTTESEEEEEESTSESBESB-HHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhcCCccEEEEeecccccccccchhhhhccccccccccchhhc
Confidence 4789999999999999999999999999999999999999999999999999999999999988654111 1122233
Q ss_pred HHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhcccccccccccccc
Q psy9494 95 EFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRD 172 (314)
Q Consensus 95 ~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 172 (314)
.++.. .+||||||+|||+|+|||++++++||+|||+++++|++||+++|
T Consensus 81 ~l~~~l~~~~kp~Iaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~G----------------------------- 131 (245)
T PF00378_consen 81 ELLSRLANFPKPTIAAVNGHAVGGGFELALACDFRIAAEDAKFGFPEVRLG----------------------------- 131 (245)
T ss_dssp HHHHHHHHSSSEEEEEESSEEETHHHHHHHHSSEEEEETTTEEETGGGGGT-----------------------------
T ss_pred cccccchhhhhheeecccccccccccccccccceEEeecccceeeeecccC-----------------------------
Confidence 33333 99999999999999999999999999999999999999999999
Q ss_pred cccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHHhCCHH-HHHHH
Q psy9494 173 NLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQS-MLADR 251 (314)
Q Consensus 173 ~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~~~-~~~~K 251 (314)
++|++|++++|++++|+.+|++++++|+.++|+||+++||||+++|++++.+.+.+++++++..|+. ++.+|
T Consensus 132 -------~~p~~g~~~~l~r~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~l~~~~~~a~~~~K 204 (245)
T PF00378_consen 132 -------IFPGAGGTFRLPRLIGPSRARELLLTGEPISAEEALELGLVDEVVPDEELDEEALELAKRLAAKPPSALRATK 204 (245)
T ss_dssp -------SSSTSTHHHHHHHHHHHHHHHHHHHHTCEEEHHHHHHTTSSSEEESGGGHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred -------cccccccccccceeeecccccccccccccchhHHHHhhcceeEEcCchhhhHHHHHHHHHHhcCCHHHHHHHH
Confidence 7888999999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHhhhhchHHHHHH
Q psy9494 252 ATVLSECETCREEWMS 267 (314)
Q Consensus 252 ~~~~~~~~~~~~~~~~ 267 (314)
+.++........+...
T Consensus 205 ~~~~~~~~~~~~~~~~ 220 (245)
T PF00378_consen 205 KALNRALEQSLEEALE 220 (245)
T ss_dssp HHHHHHHHSHHHHHHH
T ss_pred HHHHHHHHhhHHHHHH
Confidence 9999876555444433
No 62
>PRK07112 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=100.00 E-value=1.8e-46 Score=347.99 Aligned_cols=236 Identities=16% Similarity=0.244 Sum_probs=193.0
Q ss_pred cccEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCch----h
Q psy9494 14 VSSVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTK----L 89 (314)
Q Consensus 14 ~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~----~ 89 (314)
++.+.++++++|++|+||||++.|++|.+|+++|.+++++++ +++|+|||||.|++||+|+|++++....... .
T Consensus 3 ~~~i~~~~~~~i~~itlnrp~~~Nal~~~~~~~L~~~l~~~~--~~vr~vVl~g~g~~FsaG~Dl~~~~~~~~~~~~~~~ 80 (255)
T PRK07112 3 YQTIRVRQQGDVCFLQLHRPEAQNTINDRLIAECMDVLDRCE--HAATIVVLEGLPEVFCFGADFSAIAEKPDAGRADLI 80 (255)
T ss_pred CceEEEEeeCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHhh--cCceEEEEEcCCCCcccCcCHHHHhhccccchhhhh
Confidence 567899999999999999999999999999999999999998 3699999999999999999999875421111 0
Q ss_pred -HHHHHHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhcccccccc
Q psy9494 90 -FDDFREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQL 166 (314)
Q Consensus 90 -~~~~~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~ 166 (314)
...+.+.+.. ++||||||+|||+|+|||++|+++||+|||+++++|++||+++|
T Consensus 81 ~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~G----------------------- 137 (255)
T PRK07112 81 DAEPLYDLWHRLATGPYVTIAHVRGKVNAGGIGFVAASDIVIADETAPFSLSELLFG----------------------- 137 (255)
T ss_pred hHHHHHHHHHHHHcCCCCEEEEEecEEEcchhHHHHcCCEEEEcCCCEEeCchhhhc-----------------------
Confidence 1112233332 89999999999999999999999999999999999999999999
Q ss_pred cccccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHHhCCHH
Q psy9494 167 KHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQS 246 (314)
Q Consensus 167 ~~~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~~~ 246 (314)
+.|++ ++.++++++|+.+|++++++|+.++|+||+++||||+++|+++. .+.+++++|++.||.
T Consensus 138 -------------l~p~~-~~~~l~~~vg~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~--~~~~~a~~l~~~~p~ 201 (255)
T PRK07112 138 -------------LIPAC-VLPFLIRRIGTQKAHYMTLMTQPVTAQQAFSWGLVDAYGANSDT--LLRKHLLRLRCLNKA 201 (255)
T ss_pred -------------cCcch-hhHHHHHHhCHHHHHHHHHhCCcccHHHHHHcCCCceecCcHHH--HHHHHHHHHHhCCHH
Confidence 55554 45689999999999999999999999999999999999997553 578899999999999
Q ss_pred -HHHHHHHHHhhhhchHHHHHHHHHHHHhh--------hHHHHHHhcCCCCCCC
Q psy9494 247 -MLADRATVLSECETCREEWMSERKHYIGI--------SFELKFLQKKKKAKNG 291 (314)
Q Consensus 247 -~~~~K~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~af~ekr~p~~~~ 291 (314)
++.+|+.++.. .....+....+...... ....+|++||+|.|+.
T Consensus 202 a~~~~K~~~~~~-~~~~~~~~~~e~~~~~~~~~~~~~~eg~~af~~kr~p~~~~ 254 (255)
T PRK07112 202 AVARYKSYASTL-DDTVAAARPAALAANIEMFADPENLRKIARYVETGKFPWEA 254 (255)
T ss_pred HHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHcChHHHHHHHHHHcCCCCCCCC
Confidence 99999998764 22233332222111111 1126999999999975
No 63
>PLN03214 probable enoyl-CoA hydratase/isomerase; Provisional
Probab=100.00 E-value=1.4e-46 Score=353.18 Aligned_cols=240 Identities=19% Similarity=0.251 Sum_probs=199.6
Q ss_pred cccEEEEE-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCC--CCccccCCcccccCCCCc-hh
Q psy9494 14 VSSVCTKK-ILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQE--GNFCSGFDLHELDENPDT-KL 89 (314)
Q Consensus 14 ~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g--~~F~aG~Dl~~~~~~~~~-~~ 89 (314)
.+.|.+++ +++|++||||||+ .|++|.+|+.+|.++++++++|+++|+|||||.| ++||+|.|++++...... ..
T Consensus 10 ~~~i~~~~~~~~Va~itlnr~~-~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~~~FcaG~Dl~~~~~~~~~~~~ 88 (278)
T PLN03214 10 TPGVRVDRRPGGIAVVWLAKEP-VNSMTLAMWRSLDDALTALENDPTVRGVVFASGLRRDVFTAGNDIAELYAPKTSAAR 88 (278)
T ss_pred CCceEEEEcCCCEEEEEECCCC-CCCCCHHHHHHHHHHHHHHHcCCCceEEEEeCCCCCCcccCccCHHHHhccccchHH
Confidence 34688888 6899999999985 6999999999999999999999999999999997 699999999987532111 11
Q ss_pred HHHH----HHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhccccc
Q psy9494 90 FDDF----REFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPR 163 (314)
Q Consensus 90 ~~~~----~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~ 163 (314)
...+ ...+.. ++||||||+|||+|+|||++|+++||+||++++++|++||+++|
T Consensus 89 ~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~a~f~~pe~~lG-------------------- 148 (278)
T PLN03214 89 YAEFWLTQTTFLVRLLRSRLATVCAIRGACPAGGCAVSLCCDYRLQTTEGTMGLNEVALG-------------------- 148 (278)
T ss_pred HHHHHHHHHHHHHHHHcCCCCEEEEEcCcccchHHHHHHhCCEEEecCCCEecCcHHHhC--------------------
Confidence 1111 122222 89999999999999999999999999999999999999999999
Q ss_pred ccccccccccccccccC-CCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHHh
Q psy9494 164 TQLKHSLRDNLSRDLAI-PTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSK 242 (314)
Q Consensus 164 ~~~~~~~~~~~~~~~~~-~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~ 242 (314)
+ +|+.++++++++++|+.+|++++++|+.++|+||+++||||+++|.+++.+++.+++++|+.
T Consensus 149 ----------------l~~p~~~~~~~l~~~~G~~~a~~llltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~ 212 (278)
T PLN03214 149 ----------------IPVPKFWARLFMGRVIDRKVAESLLLRGRLVRPAEAKQLGLIDEVVPAAALMEAAASAMERALK 212 (278)
T ss_pred ----------------CCCCChhHHHHHHHhcCHHHHHHHHHcCCccCHHHHHHcCCCcEecChHHHHHHHHHHHHHHHc
Confidence 6 47888999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHH-HHHHHHHHHhhhhchHHHHHHHHHHHHhhhH--------HHHHHhcCCCCCC
Q psy9494 243 LSQS-MLADRATVLSECETCREEWMSERKHYIGISF--------ELKFLQKKKKAKN 290 (314)
Q Consensus 243 ~~~~-~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~af~ekr~p~~~ 290 (314)
.||. ++.+|+.++.......++.+..+.......+ ..+|+||.+....
T Consensus 213 ~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~d~~egi~aflek~~~~~~ 269 (278)
T PLN03214 213 LPSAARAATKALLREEFSAAWEAYYEEEAKGGWKMLSEPSIIKALGGVMERLSSGKE 269 (278)
T ss_pred CCHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhccc
Confidence 9999 9999999987755444433333322111111 2699998766543
No 64
>PRK05617 3-hydroxyisobutyryl-CoA hydrolase; Provisional
Probab=100.00 E-value=6.4e-47 Score=364.99 Aligned_cols=241 Identities=21% Similarity=0.243 Sum_probs=201.7
Q ss_pred ccEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCC-CCccccCCcccccCCC---Cch--
Q psy9494 15 SSVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQE-GNFCSGFDLHELDENP---DTK-- 88 (314)
Q Consensus 15 ~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~---~~~-- 88 (314)
+.|.++++++|++||||||+++|++|.+|+.+|.+++++++.|+++|+|||||.| ++||+|+|++++.... ...
T Consensus 3 ~~v~~~~~~~v~~itLnrP~~~Nal~~~m~~~L~~~l~~~~~d~~vrvvVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~ 82 (342)
T PRK05617 3 DEVLAEVEGGVGVITLNRPKALNALSLEMIRAIDAALDAWEDDDAVAAVVIEGAGERGFCAGGDIRALYEAARAGDPLAA 82 (342)
T ss_pred ceEEEEEECCEEEEEECCCccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEEcCCCCceeCCcCHHHHHhhhccCCchhH
Confidence 3588899999999999999999999999999999999999999999999999999 8999999999874321 111
Q ss_pred --hHHHHHHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhcccccc
Q psy9494 89 --LFDDFREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRT 164 (314)
Q Consensus 89 --~~~~~~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~ 164 (314)
........+.. .+||||||+|||+|+|||++|+++||+|||+++++|++||+++|
T Consensus 83 ~~~~~~~~~~~~~i~~~~kPvIAaVnG~a~GgG~~LalacD~ria~~~a~f~~pe~~lG--------------------- 141 (342)
T PRK05617 83 DRFFREEYRLNALIARYPKPYIALMDGIVMGGGVGISAHGSHRIVTERTKMAMPETGIG--------------------- 141 (342)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEEcCEEEccHhHHhhhCCEEEEcCCCEeeCCccccC---------------------
Confidence 11111222222 89999999999999999999999999999999999999999999
Q ss_pred cccccccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHH------------
Q psy9494 165 QLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGE------------ 232 (314)
Q Consensus 165 ~~~~~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~------------ 232 (314)
++|++|++++|++++| .+|++++++|+.++|+||+++|||++++|++++.+.
T Consensus 142 ---------------l~P~~g~~~~L~r~~g-~~a~~llltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~ 205 (342)
T PRK05617 142 ---------------FFPDVGGTYFLSRAPG-ALGTYLALTGARISAADALYAGLADHFVPSADLPALLDALISLRWDSG 205 (342)
T ss_pred ---------------cCCCccceeEehhccc-HHHHHHHHcCCCCCHHHHHHcCCcceecCHHHHHHHHHHHHhcCCccc
Confidence 7778999999999877 689999999999999999999999999999888776
Q ss_pred --------------------------------------------------HHHHHHHHHhCCHH-HHHHHHHHHhhhhch
Q psy9494 233 --------------------------------------------------AMTRAIQMSKLSQS-MLADRATVLSECETC 261 (314)
Q Consensus 233 --------------------------------------------------a~~~a~~la~~~~~-~~~~K~~~~~~~~~~ 261 (314)
|.+++++|++.||. ++.+|+.++......
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~ 285 (342)
T PRK05617 206 ADVVDAALAAFATPAPASELAAQRAWIDECFAGDTVEDIIAALEADGGEFAAKTADTLRSRSPTSLKVTLEQLRRARGLT 285 (342)
T ss_pred hhHHHHHHHHhccCCCcchhHHHHHHHHHHhCCCCHHHHHHHHHhccHHHHHHHHHHHHhCCcHHHHHHHHHHHHhcCCC
Confidence 88999999999999 999999998765544
Q ss_pred HHHHHHHHHHHHhhhH--------HHHHH-hc-CCCCCCCC
Q psy9494 262 REEWMSERKHYIGISF--------ELKFL-QK-KKKAKNGH 292 (314)
Q Consensus 262 ~~~~~~~~~~~~~~~~--------~~af~-ek-r~p~~~~~ 292 (314)
.++.+..+.......+ ..+|+ +| |.|.|+++
T Consensus 286 l~~~~~~e~~~~~~~~~~~d~~egv~afl~ek~r~p~~~~~ 326 (342)
T PRK05617 286 LEECLRRELRLALAMLRSPDFVEGVRAVLIDKDRNPKWSPA 326 (342)
T ss_pred HHHHHHHHHHHHHHHHhCCchhhccceEEEcCCCCCCCCCC
Confidence 4443332222111111 16896 76 99999887
No 65
>PRK05869 enoyl-CoA hydratase; Validated
Probab=100.00 E-value=2.1e-46 Score=341.39 Aligned_cols=208 Identities=26% Similarity=0.325 Sum_probs=184.6
Q ss_pred cccEEEEEe-----CCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCch
Q psy9494 14 VSSVCTKKI-----LNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTK 88 (314)
Q Consensus 14 ~~~v~~~~~-----~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~ 88 (314)
+++|.++.. ++|++|+||||++ |++|.+|+.+|.+++++++.|+++|+|||||.|++||+|+|++++.......
T Consensus 2 ~~~~~~~~~~~~~~~~i~~itlnrp~~-Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~ 80 (222)
T PRK05869 2 NEFVNVVVSDGSQDAGLATLLLSRPPT-NALTRQVYREIVAAANELGRRDDVAAVILYGGHEIFSAGDDMPELRTLSAQE 80 (222)
T ss_pred ccchhhhcccCcccCCEEEEEECCCCC-CCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcCcCcCHHHHhccChhh
Confidence 345555544 8899999999986 9999999999999999999999999999999999999999999875432211
Q ss_pred h---HHHHHHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhccccc
Q psy9494 89 L---FDDFREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPR 163 (314)
Q Consensus 89 ~---~~~~~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~ 163 (314)
. .+.+.+.+.+ ++||||||+|||+|+|||++|+++||+|||+++++|++||+++|
T Consensus 81 ~~~~~~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G-------------------- 140 (222)
T PRK05869 81 ADTAARVRQQAVDAVAAIPKPTVAAITGYALGAGLTLALAADWRVSGDNVKFGATEILAG-------------------- 140 (222)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEEcCEeecHHHHHHHhCCEEEecCCCEEcCchhccC--------------------
Confidence 1 1112233333 89999999999999999999999999999999999999999999
Q ss_pred ccccccccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHHhC
Q psy9494 164 TQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKL 243 (314)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~ 243 (314)
++|+.|+++++++++|..+|++++++|++++|+||+++||||+++|++++.+++.+++++|++.
T Consensus 141 ----------------l~p~~g~~~~l~~~ig~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~ia~~ 204 (222)
T PRK05869 141 ----------------LAPSGDGMARLTRAAGPSRAKELVFSGRFFDAEEALALGLIDEMVAPDDVYDAAAAWARRFLDG 204 (222)
T ss_pred ----------------CCCCccHHHHHHHHhCHHHHHHHHHcCCCcCHHHHHHCCCCCEeeCchHHHHHHHHHHHHHHcC
Confidence 7778889999999999999999999999999999999999999999999999999999999999
Q ss_pred CHH-HHHHHHHHHhhh
Q psy9494 244 SQS-MLADRATVLSEC 258 (314)
Q Consensus 244 ~~~-~~~~K~~~~~~~ 258 (314)
||. ++.+|+.++...
T Consensus 205 ~~~a~~~~K~~~~~~~ 220 (222)
T PRK05869 205 PPHALAAAKAGISDVY 220 (222)
T ss_pred CHHHHHHHHHHHHHHh
Confidence 999 999999988654
No 66
>PLN02874 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=100.00 E-value=9.9e-46 Score=361.11 Aligned_cols=242 Identities=18% Similarity=0.218 Sum_probs=199.6
Q ss_pred cccEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCC--CchhHH
Q psy9494 14 VSSVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENP--DTKLFD 91 (314)
Q Consensus 14 ~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~--~~~~~~ 91 (314)
...|.++++++|++||||||+++|++|.+|+.+|.++++.++.|++||+|||+|.|++||+|+|++++.... ......
T Consensus 10 ~~~v~~~~~~~v~~ItLnrP~~~Nal~~~m~~eL~~al~~~~~d~~vrvvVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~ 89 (379)
T PLN02874 10 EEVVLGEEKGRVRVITLNRPRQLNVISLSVVSLLAEFLEQWEKDDSVELIIIKGAGRAFSAGGDLKMFYDGRESDDSCLE 89 (379)
T ss_pred CCceEEEEECCEEEEEECCCccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCCccCccCHHHHHhhcccchHHHH
Confidence 456888889999999999999999999999999999999999999999999999999999999999874321 111111
Q ss_pred HHH---HHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhcccccccc
Q psy9494 92 DFR---EFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQL 166 (314)
Q Consensus 92 ~~~---~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~ 166 (314)
.+. ..... ++||||||+|||+|+|||++|+++||+|||+++++|++||+++|
T Consensus 90 ~~~~~~~l~~~i~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~iG----------------------- 146 (379)
T PLN02874 90 VVYRMYWLCYHIHTYKKTQVALVHGLVMGGGAGLMVPMKFRVVTEKTVFATPEASVG----------------------- 146 (379)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEecCeEEecHHHHHHhCCeEEEeCCeEEeccccccC-----------------------
Confidence 111 11222 89999999999999999999999999999999999999999999
Q ss_pred cccccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHH---H-----------
Q psy9494 167 KHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVG---E----------- 232 (314)
Q Consensus 167 ~~~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~---~----------- 232 (314)
+.|+.|++++|++++|. ++++|++||++++|+||+++|||+++||++++.+ +
T Consensus 147 -------------l~p~~g~~~~L~rl~g~-~a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~l~~~~~~~ 212 (379)
T PLN02874 147 -------------FHTDCGFSYILSRLPGH-LGEYLALTGARLNGKEMVACGLATHFVPSEKLPELEKRLLNLNSGDESA 212 (379)
T ss_pred -------------cCCChhHHHHHHhhhHH-HHHHHHHcCCcccHHHHHHcCCccEEeCHHHHHHHHHHHHhcCCCCHHH
Confidence 67788999999999995 8999999999999999999999999999887765 2
Q ss_pred -----------------------------------------------------HHHHHHHHHhCCHH-HHHHHHHHHhhh
Q psy9494 233 -----------------------------------------------------AMTRAIQMSKLSQS-MLADRATVLSEC 258 (314)
Q Consensus 233 -----------------------------------------------------a~~~a~~la~~~~~-~~~~K~~~~~~~ 258 (314)
|.+++++|++.+|. ++.+|+.++...
T Consensus 213 ~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~eii~al~~~~~~~~~~~A~~~a~~l~~~sP~al~~tk~~~~~~~ 292 (379)
T PLN02874 213 VQEAIEEFSKDVQADEDSILNKQSWINECFSKDTVEEIIKAFESEASKTGNEWIKETLKGLRRSSPTGLKITLRSIREGR 292 (379)
T ss_pred HHHHHHHhhcccCCCcchhHHHHHHHHHHhCCCCHHHHHHHHhhcccccccHHHHHHHHHHHhcChHHHHHHHHHHHHhc
Confidence 34789999999999 999999998765
Q ss_pred hchHHHHHHHH-HHHHhh-------hH---HHHHH-hc-CCCCCCCC
Q psy9494 259 ETCREEWMSER-KHYIGI-------SF---ELKFL-QK-KKKAKNGH 292 (314)
Q Consensus 259 ~~~~~~~~~~~-~~~~~~-------~~---~~af~-ek-r~p~~~~~ 292 (314)
.....+.+..+ ...... .+ ..||+ +| |+|.|+++
T Consensus 293 ~~~l~~~l~~e~~~~~~~~~~~~~~D~~EGv~AflidK~r~P~w~~~ 339 (379)
T PLN02874 293 KQSLAECLKKEFRLTMNILRSTVSDDVYEGIRALVIDKDNAPKWNPS 339 (379)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCcCcchhhccceEEEcCCCCCCCCCC
Confidence 54444333322 111101 11 16997 78 99999986
No 67
>PRK08290 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=7.1e-45 Score=343.19 Aligned_cols=210 Identities=24% Similarity=0.311 Sum_probs=184.7
Q ss_pred ccccEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCC------
Q psy9494 13 LVSSVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPD------ 86 (314)
Q Consensus 13 ~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~------ 86 (314)
.++.|.++++++|++||||||++.|++|.+|+++|.++++++++|+++|+|||||.|++||+|+|++++.....
T Consensus 2 ~~~~v~~~~~~~Va~ItlnrP~~~Nal~~~~~~eL~~~l~~~~~d~~vrvvVltg~G~~FcaG~Dl~~~~~~~~~~~~~~ 81 (288)
T PRK08290 2 EYEYVRYEVAGRIARITLNRPEARNAQNRQMLYELDAAFRRAEADDAVRVIVLAGAGKHFSAGHDLGSGTPGRDRDPGPD 81 (288)
T ss_pred CCceEEEEeeCCEEEEEecCccccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCccccCCCccccccccccccccc
Confidence 35668899999999999999999999999999999999999999999999999999999999999998632110
Q ss_pred ------------c--h--hH---HHHHHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccc
Q psy9494 87 ------------T--K--LF---DDFREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYL 145 (314)
Q Consensus 87 ------------~--~--~~---~~~~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~ 145 (314)
. . .. ..+.+.+.. ++||||||+|||+|+|||++|+++||+|||+++++|++||+++|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pkPvIAaVnG~a~GgG~~lalacD~ria~e~a~f~~pe~~lG-- 159 (288)
T PRK08290 82 QHPTLWWDGATKPGVEQRYAREWEVYLGMCRRWRDLPKPTIAQVQGACIAGGLMLAWVCDLIVASDDAFFSDPVVRMG-- 159 (288)
T ss_pred cccccccccccccchhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeeHHHHHHHHhCCEEEeeCCCEecCcccccC--
Confidence 0 0 00 111222222 89999999999999999999999999999999999999999999
Q ss_pred cccccccchhhhhcccccccccccccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeC
Q psy9494 146 KDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVN 225 (314)
Q Consensus 146 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~ 225 (314)
++ + .+++++++++|+.+|++++++|+.++|+||+++||||++++
T Consensus 160 ----------------------------------l~-~-~~~~~l~~~iG~~~A~~llltG~~i~A~eA~~~GLV~~vv~ 203 (288)
T PRK08290 160 ----------------------------------IP-G-VEYFAHPWELGPRKAKELLFTGDRLTADEAHRLGMVNRVVP 203 (288)
T ss_pred ----------------------------------cC-c-chHHHHHHHhhHHHHHHHHHcCCCCCHHHHHHCCCccEeeC
Confidence 65 2 45677899999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHHHhCCHH-HHHHHHHHHhhhhc
Q psy9494 226 CGTAVGEAMTRAIQMSKLSQS-MLADRATVLSECET 260 (314)
Q Consensus 226 ~~~l~~~a~~~a~~la~~~~~-~~~~K~~~~~~~~~ 260 (314)
++++.+++.+++++|++.|+. ++.+|+.++...+.
T Consensus 204 ~~~l~~~a~~~a~~la~~~~~a~~~~K~~~~~~~~~ 239 (288)
T PRK08290 204 RDELEAETLELARRIAAMPPFGLRLTKRAVNQTLDA 239 (288)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999 99999999876543
No 68
>PRK08272 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=6.1e-45 Score=345.45 Aligned_cols=209 Identities=24% Similarity=0.378 Sum_probs=183.0
Q ss_pred hccccEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCc----
Q psy9494 12 RLVSSVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDT---- 87 (314)
Q Consensus 12 ~~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~---- 87 (314)
+.++.|.++++++|++||||||++.|++|.+|+.+|.+++++++.|+++|+|||+|.|++||+|.|++++......
T Consensus 7 ~~~~~v~~e~~~~V~~Itlnrp~~~Nal~~~m~~eL~~al~~~~~d~~vrvvVl~G~G~~FcaG~Dl~~~~~~~~~~~~~ 86 (302)
T PRK08272 7 DNLKTMTYEVTGRIARITLNRPEKGNAITADTPLELRAAVERADLDPGVHVILVSGAGKGFCAGYDLSAYAEGSSSGGGG 86 (302)
T ss_pred CCCCeEEEEeECCEEEEEecCccccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCcCHHHHhhcccccccc
Confidence 4567799999999999999999999999999999999999999999999999999999999999999987432110
Q ss_pred ------------------h------hHHHHHHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccc
Q psy9494 88 ------------------K------LFDDFREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRR 141 (314)
Q Consensus 88 ------------------~------~~~~~~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~ 141 (314)
. ....+.+.+.. ++||||||+|||+|+|||++|+++||+|||+++++|++||++
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~~ias~~a~f~~pe~~ 166 (302)
T PRK08272 87 GAYPGKRQAVNHLPDDPWDPMIDYQMMSRFVRGFMSLWHAHKPTVAKVHGYCVAGGTDIALHCDQVIAADDAKIGYPPTR 166 (302)
T ss_pred cccccccccccccccccccchhhHHHHHHHHHHHHHHHhCCCCEEEEEccEeehhhHHHHHhCCEEEEeCCCEecCcchh
Confidence 0 01111222222 899999999999999999999999999999999999999999
Q ss_pred cccccccccccchhhhhcccccccccccccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCce
Q psy9494 142 FVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCN 221 (314)
Q Consensus 142 ~G~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~ 221 (314)
+|. +|| ..++++++|+.+|++++++|++++|+||+++||||
T Consensus 167 ~gg-----------------------------------~~~----~~~~~~~vG~~~A~~llltG~~i~a~eA~~~GLv~ 207 (302)
T PRK08272 167 VWG-----------------------------------VPA----TGMWAYRLGPQRAKRLLFTGDCITGAQAAEWGLAV 207 (302)
T ss_pred ccc-----------------------------------CCh----HHHHHHHhhHHHHHHHHHcCCccCHHHHHHcCCCc
Confidence 751 553 23578899999999999999999999999999999
Q ss_pred eeeCCCchHHHHHHHHHHHHhCCHH-HHHHHHHHHhhhh
Q psy9494 222 KMVNCGTAVGEAMTRAIQMSKLSQS-MLADRATVLSECE 259 (314)
Q Consensus 222 ~vv~~~~l~~~a~~~a~~la~~~~~-~~~~K~~~~~~~~ 259 (314)
+++|++++.+++.++|++|+..||. ++.+|+.++...+
T Consensus 208 ~vv~~~~l~~~a~~la~~ia~~~~~a~~~~K~~l~~~~~ 246 (302)
T PRK08272 208 EAVPPEELDERTERLVERIAAVPVNQLAMVKLAVNSALL 246 (302)
T ss_pred eecCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999 9999999987654
No 69
>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional
Probab=100.00 E-value=2.1e-44 Score=365.39 Aligned_cols=240 Identities=13% Similarity=0.096 Sum_probs=198.1
Q ss_pred EEEEeCCEEEEEEcCCCCC-------------CCCCHHHHHHHHHHHHHhhh-CCCccEEEEEcCC-CCccccCCccccc
Q psy9494 18 CTKKILNITLISLNRPDKI-------------NAINLKTLDALQENIKRFED-DTESPLAILYGQE-GNFCSGFDLHELD 82 (314)
Q Consensus 18 ~~~~~~~v~~itlnrp~~~-------------Nal~~~~~~eL~~al~~~~~-d~~vr~vVltg~g-~~F~aG~Dl~~~~ 82 (314)
.++++++|++||||||+++ |++|.+|+.+|.+++++++. |+++|+|||||.| ++||+|+|++...
T Consensus 265 ~~~~~~~va~itlnrP~~~Na~~~~~~~~~~~Nal~~~~~~eL~~al~~~~~~d~~vr~vVltg~G~~~F~aG~Dl~~~~ 344 (550)
T PRK08184 265 EIDRAARTATITVKAPTAAQPADIAGIVAAGAAWWPLQMARELDDAILHLRTNELDIGTWVLKTEGDAAAVLAADATLLA 344 (550)
T ss_pred EEEccCCEEEEEEeCcccccccccccccccccccCCHHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCCcEEeCCChhhhc
Confidence 3455689999999999988 68999999999999999996 7999999999999 4999999987332
Q ss_pred CCCC---chhHHHHHHHHhc--CCCCcEEEEEc-Ccccccc-ccccccCcEEEEe-------CCeEeecccccccccccc
Q psy9494 83 ENPD---TKLFDDFREFLQK--PAKKPIIAAIT-GYAVGQG-LDLALWCDLRFVE-------ENVLMGFYNRRFVYLKDS 148 (314)
Q Consensus 83 ~~~~---~~~~~~~~~~~~~--~~~kPvIAav~-G~a~GgG-~~lalacD~~ia~-------~~a~f~~pe~~~G~~~~~ 148 (314)
.... ......+...+.+ ++||||||+|| |+|+||| ++|+++||+|||+ ++++|++||+++|
T Consensus 345 ~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~~G~a~GgG~~eLalacD~~ia~~~~~~~~~~a~f~~pe~~~G----- 419 (550)
T PRK08184 345 HKDHWLVRETRGYLRRTLKRLDVTSRSLFALIEPGSCFAGTLAELALAADRSYMLALPDDNDPAPAITLSALNFG----- 419 (550)
T ss_pred ccchHHHHHHHHHHHHHHHHHHhCCCCEEEEECCCceehhHHHHHHHHCChhhhcCCCCCCCCCCEEECcccccc-----
Confidence 1111 0111112222322 89999999997 9999999 9999999999999 9999999999999
Q ss_pred ccccchhhhhcccccccccccccccccccccCCCCchHHHHHHHH-hhHHHHHHH--HhcCCCCCHHHHHHCCCceeeeC
Q psy9494 149 LLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQM-IGTSRTMDM--ISLGRHITAREALDWGLCNKMVN 225 (314)
Q Consensus 149 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~g~~~~l~~~-vG~~~a~~l--ll~G~~~sA~eA~~~GLV~~vv~ 225 (314)
+.|++|++++|+++ +|..+|+++ +++|++++|+||+++||||+++|
T Consensus 420 -------------------------------l~p~~gg~~~L~r~~vG~~~A~~~~l~~tg~~i~A~eA~~~GLv~~vv~ 468 (550)
T PRK08184 420 -------------------------------LYPMVNGLSRLARRFYGEPDPLAAVRAKIGQPLDADAAEELGLVTAAPD 468 (550)
T ss_pred -------------------------------CCCCCCcHHHhHHHhcChHHHHHHHHHHhCCcCCHHHHHHcCCcccccC
Confidence 77789999999998 699999997 58999999999999999999999
Q ss_pred CCchHHHHHHHHHHHHhCCHH-HHHHHHHHHhhhhchHHHH-HHHHHHHHhhh-----------HHHHHHhcCCCCCCCC
Q psy9494 226 CGTAVGEAMTRAIQMSKLSQS-MLADRATVLSECETCREEW-MSERKHYIGIS-----------FELKFLQKKKKAKNGH 292 (314)
Q Consensus 226 ~~~l~~~a~~~a~~la~~~~~-~~~~K~~~~~~~~~~~~~~-~~~~~~~~~~~-----------~~~af~ekr~p~~~~~ 292 (314)
++++.+++.+++++|++.||. ++.+|+.++.......++. +..+...+... ...+|+|||+|+|++.
T Consensus 469 ~~~l~~~a~~~a~~ia~~~p~a~~~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~d~~e~~~g~~af~ekr~~~f~~~ 548 (550)
T PRK08184 469 DIDWEDEVRIALEERASLSPDALTGMEANLRFAGPETMETRIFGRLTAWQNWIFQRPNAVGEKGALKVYGTGQKAQFDWN 548 (550)
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCcccccchHHHHhccCCCCCCCCC
Confidence 999999999999999999999 9999999988766554443 22222211111 1369999999999986
Q ss_pred c
Q psy9494 293 L 293 (314)
Q Consensus 293 ~ 293 (314)
.
T Consensus 549 ~ 549 (550)
T PRK08184 549 R 549 (550)
T ss_pred C
Confidence 3
No 70
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Probab=100.00 E-value=3.1e-44 Score=363.41 Aligned_cols=240 Identities=15% Similarity=0.099 Sum_probs=198.6
Q ss_pred EEEEEeCCEEEEEEcCCCCC-------------CCCCHHHHHHHHHHHHHhh-hCCCccEEEEEcCCCC-ccccCCcccc
Q psy9494 17 VCTKKILNITLISLNRPDKI-------------NAINLKTLDALQENIKRFE-DDTESPLAILYGQEGN-FCSGFDLHEL 81 (314)
Q Consensus 17 v~~~~~~~v~~itlnrp~~~-------------Nal~~~~~~eL~~al~~~~-~d~~vr~vVltg~g~~-F~aG~Dl~~~ 81 (314)
+.++++++|++||||||++. |++|.+|+.+|.+++++++ +|++||+|||||.|+. ||+|+|++..
T Consensus 260 v~~~~~~~va~itlnrP~~~~~~~~~~~~~~~~Nal~~~~~~~L~~a~~~~~~~d~~vr~vVl~g~G~~~F~aG~Dl~~~ 339 (546)
T TIGR03222 260 VAIDRAARTATITLKGPKAAQPADIAAIVAQGANWWPLKLARELDDAILHLRTNELDIGLWVFRTQGDAELVLAADALLE 339 (546)
T ss_pred EEEeccCCEEEEEecChhhcCccccccccccccCcCCHHHHHHHHHHHHHHhhCCCCeEEEEEEcCCCCceecCcCcccc
Confidence 44566899999999999999 9999999999999999998 4599999999999987 9999999843
Q ss_pred cCCCCchhH---HHHHHHHhc--CCCCcEEEEE-cCcccccc-ccccccCcEEEE-------eCCeEeeccccccccccc
Q psy9494 82 DENPDTKLF---DDFREFLQK--PAKKPIIAAI-TGYAVGQG-LDLALWCDLRFV-------EENVLMGFYNRRFVYLKD 147 (314)
Q Consensus 82 ~~~~~~~~~---~~~~~~~~~--~~~kPvIAav-~G~a~GgG-~~lalacD~~ia-------~~~a~f~~pe~~~G~~~~ 147 (314)
......... ......+.. .++|||||+| ||+|+||| ++|+++||++|| +++++|++||.++|
T Consensus 340 ~~~~~~~~~~~~~~~~~~~~~l~~~~kpviAav~~G~a~GgG~~eLalacD~~ia~~~~~~~~~~a~f~~~e~~lG---- 415 (546)
T TIGR03222 340 AHKDHWFVRETIGYLRRTLARLDVSSRSLFALIEPGSCFAGTLAELAFAADRSYMLAFPDNNDPEPAITLSELNFG---- 415 (546)
T ss_pred ccccchhHHHHHHHHHHHHHHHHcCCCCEEEEECCCeEeHHHHHHHHHhCceeeecCCCCCCCCCCEEeCCccccc----
Confidence 211110101 111222222 8999999999 89999999 999999999999 89999999999999
Q ss_pred cccccchhhhhcccccccccccccccccccccCCCCchHHHHHHHHh-hHHHH--HHHHhcCCCCCHHHHHHCCCceeee
Q psy9494 148 SLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMI-GTSRT--MDMISLGRHITAREALDWGLCNKMV 224 (314)
Q Consensus 148 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~g~~~~l~~~v-G~~~a--~~lll~G~~~sA~eA~~~GLV~~vv 224 (314)
+.|++|++++|++++ |..++ ++++++|+.++|+||+++|||++++
T Consensus 416 --------------------------------l~p~~gg~~~L~~~v~G~~~a~~~~~~ltg~~i~A~eA~~~Glv~~vv 463 (546)
T TIGR03222 416 --------------------------------LYPMVNGLSRLATRFYAEPAPVAAVRDKIGQALDAEEAERLGLVTAAP 463 (546)
T ss_pred --------------------------------cCCCcCcHHHHHHHhcCchhHHHHHHHHhCCCCCHHHHHHcCCccccc
Confidence 777899999999998 99888 5699999999999999999999999
Q ss_pred CCCchHHHHHHHHHHHHhCCHH-HHHHHHHHHhhhhchHHHH-HHHHHHHHhhh-----------HHHHHHhcCCCCCCC
Q psy9494 225 NCGTAVGEAMTRAIQMSKLSQS-MLADRATVLSECETCREEW-MSERKHYIGIS-----------FELKFLQKKKKAKNG 291 (314)
Q Consensus 225 ~~~~l~~~a~~~a~~la~~~~~-~~~~K~~~~~~~~~~~~~~-~~~~~~~~~~~-----------~~~af~ekr~p~~~~ 291 (314)
+++++.+++.+++++|++.||. ++.+|+.++.......+.. +..+...+... ...+|+|||+|+|+-
T Consensus 464 ~~~~l~~~a~~~a~~la~~~p~a~~~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~d~~e~~~g~~af~ekr~p~f~~ 543 (546)
T TIGR03222 464 DDIDWEDEIRIALEERASFSPDALTGLEANLRFAGPETMETRIFGRLTAWQNWIFNRPNAVGENGALKVYGSGKKAQFDM 543 (546)
T ss_pred CchHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCcChhhhHHHHHHHHHHHHhcCCcccchhhHHHHHccCCCCCCCc
Confidence 9999999999999999999999 9999999987765544433 22221111111 236999999999975
Q ss_pred C
Q psy9494 292 H 292 (314)
Q Consensus 292 ~ 292 (314)
.
T Consensus 544 ~ 544 (546)
T TIGR03222 544 E 544 (546)
T ss_pred c
Confidence 3
No 71
>PLN02157 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=100.00 E-value=3.8e-44 Score=351.38 Aligned_cols=206 Identities=17% Similarity=0.174 Sum_probs=182.1
Q ss_pred cccEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCC--C-ch-h
Q psy9494 14 VSSVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENP--D-TK-L 89 (314)
Q Consensus 14 ~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~--~-~~-~ 89 (314)
...|.++++++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||+|.|++||+|+|++++.... . .. .
T Consensus 36 ~~~V~~e~~g~v~~ItLNRP~~lNALs~~m~~~L~~al~~~~~D~~vrvVVl~G~GkaFcAGgDl~~l~~~~~~~~~~~~ 115 (401)
T PLN02157 36 DYQVLVEGSGCSRTAILNRPPALNALTTHMGYRLQKLYKNWEEDPNIGFVMMKGSGRAFCAGGDIVSLYHLRKRGSPDAI 115 (401)
T ss_pred CCceEEEEECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHhhCCCCeEEEEECCCCCccCCcCHHHHHhhccccchHHH
Confidence 345888999999999999999999999999999999999999999999999999999999999999875321 1 11 1
Q ss_pred HHHH---HHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhcccccc
Q psy9494 90 FDDF---REFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRT 164 (314)
Q Consensus 90 ~~~~---~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~ 164 (314)
...+ ...... ++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|
T Consensus 116 ~~~~~~~~~l~~~i~~~pkPvIA~v~G~a~GGG~~Lal~cD~rvate~a~fa~PE~~iG--------------------- 174 (401)
T PLN02157 116 REFFSSLYSFIYLLGTYLKPHVAILNGVTMGGGTGVSIPGTFRVATDRTIFATPETIIG--------------------- 174 (401)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEEeCeEeehhHHHHHhCCEEEEeCCCEEEChhhhcC---------------------
Confidence 1111 111111 89999999999999999999999999999999999999999999
Q ss_pred cccccccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHHhCC
Q psy9494 165 QLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLS 244 (314)
Q Consensus 165 ~~~~~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~ 244 (314)
+.|+.|++++|++++|. ++++|++||+.++|+||+++|||++++|.+++ +++.+++++++..+
T Consensus 175 ---------------l~Pd~G~s~~L~rl~G~-~a~~L~LTG~~i~A~eA~~~GLv~~vVp~~~l-~~~~~~~~~i~~~~ 237 (401)
T PLN02157 175 ---------------FHPDAGASFNLSHLPGR-LGEYLGLTGLKLSGAEMLACGLATHYIRSEEI-PVMEEQLKKLLTDD 237 (401)
T ss_pred ---------------CCCCccHHHHHHHhhhH-HHHHHHHcCCcCCHHHHHHcCCceEEeCHhHH-HHHHHHHHHHHcCC
Confidence 77789999999999996 89999999999999999999999999999987 67889999999999
Q ss_pred HH-HHHHHHHHHhh
Q psy9494 245 QS-MLADRATVLSE 257 (314)
Q Consensus 245 ~~-~~~~K~~~~~~ 257 (314)
|. +..+|+.++..
T Consensus 238 p~av~~~k~~~~~~ 251 (401)
T PLN02157 238 PSVVESCLEKCAEV 251 (401)
T ss_pred HHHHHHHHHHHhcc
Confidence 99 99999988754
No 72
>PRK08788 enoyl-CoA hydratase; Validated
Probab=100.00 E-value=7.6e-44 Score=336.12 Aligned_cols=210 Identities=21% Similarity=0.179 Sum_probs=177.3
Q ss_pred EEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhh-----CCCccEEEEEcC-CCCccccCCcccccCC---CCc
Q psy9494 17 VCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFED-----DTESPLAILYGQ-EGNFCSGFDLHELDEN---PDT 87 (314)
Q Consensus 17 v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~-----d~~vr~vVltg~-g~~F~aG~Dl~~~~~~---~~~ 87 (314)
|.++.+++|++|+|| |++.|+||.+|+.+|.++++++++ |+++|+|||||. |++||+|.|++++... ...
T Consensus 19 i~~e~~~~ia~itl~-p~~~Nal~~~~~~eL~~al~~~~~~~~~~d~~vrvVVltg~~gk~FcaG~Dl~~~~~~~~~~~~ 97 (287)
T PRK08788 19 VYYEEERNVMWMYMR-AQPRPCFNLELLDDIMNLQRAIRQRLDDSGLPVDFWVLASDVPGVFNLGGDLALFAELIRAGDR 97 (287)
T ss_pred EEEEccCCEEEEEEC-CCCCCCCCHHHHHHHHHHHHHHHhhccCCCCCeEEEEEEcCCCCceEeCcCHHHHhhhccccch
Confidence 566678999999996 999999999999999999999998 899999999999 7999999999987431 111
Q ss_pred h-h---HHHHHHHHh----c-CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhh
Q psy9494 88 K-L---FDDFREFLQ----K-PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYA 158 (314)
Q Consensus 88 ~-~---~~~~~~~~~----~-~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~ 158 (314)
. . ...+...+. . .+||||||+|||+|+|||++|+++||+||++++++|++||+++|
T Consensus 98 ~~~~~~~~~~~~~~~~l~~~~~~pkPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pev~lG--------------- 162 (287)
T PRK08788 98 DALLAYARACVDGVHAFHRGFGAGAISIALVQGDALGGGFEAALSHHTIIAERGAKMGFPEILFN--------------- 162 (287)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCEEEEECCeeehHHHHHHHhCCEEEecCCCEeeCchhhhC---------------
Confidence 1 0 011111111 1 69999999999999999999999999999999999999999999
Q ss_pred cccccccccccccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHH
Q psy9494 159 LHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAI 238 (314)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~ 238 (314)
++|++|+++++++++|+.+|++++++|+.++|+||++|||||+++|++++.+++.++++
T Consensus 163 ---------------------l~p~~g~~~~l~~~vG~~~A~ellltG~~l~A~eA~~~GLV~~vv~~~el~~~a~~~a~ 221 (287)
T PRK08788 163 ---------------------LFPGMGAYSFLARRVGPKLAEELILSGKLYTAEELHDMGLVDVLVEDGQGEAAVRTFIR 221 (287)
T ss_pred ---------------------cCCCchHHHHHHHHhhHHHHHHHHHcCCCCCHHHHHHCCCCcEecCchHHHHHHHHHHH
Confidence 77788999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCHH-HHHHHHHHHhhhhchHHH
Q psy9494 239 QMSKLSQS-MLADRATVLSECETCREE 264 (314)
Q Consensus 239 ~la~~~~~-~~~~K~~~~~~~~~~~~~ 264 (314)
+|+.. |. ...+|+..+...+...++
T Consensus 222 ~ia~~-~~~~~a~k~~~~~~~~~~~~~ 247 (287)
T PRK08788 222 KSKRK-LNGWRAMLRARRRVNPLSLEE 247 (287)
T ss_pred HHhcC-ccHHHHHHHHHHhhccCCHHH
Confidence 99987 44 555555554433333333
No 73
>PRK06213 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.1e-43 Score=324.29 Aligned_cols=211 Identities=20% Similarity=0.261 Sum_probs=183.6
Q ss_pred cccEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCc--hhHH
Q psy9494 14 VSSVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDT--KLFD 91 (314)
Q Consensus 14 ~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~--~~~~ 91 (314)
.+.|.++++++|++||||||+ .|++|.+|+++|.+++++++ +++|+||++|.|++||+|.|++++...... ....
T Consensus 2 ~~~i~~~~~~~v~~itln~~~-~Nal~~~~~~~l~~~l~~~~--~~~~vvvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~ 78 (229)
T PRK06213 2 SELVSYTLEDGVATITLDDGK-VNALSPAMIDALNAALDQAE--DDRAVVVITGQPGIFSGGFDLKVMTSGAQAAIALLT 78 (229)
T ss_pred cceEEEEecCCEEEEEeCCCC-CCCCCHHHHHHHHHHHHHhh--ccCcEEEEeCCCCceEcCcCHHHHhcchHhHHHHHH
Confidence 346888999999999999984 69999999999999999998 457999999999999999999987542111 1112
Q ss_pred HHHHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCC-eEeeccccccccccccccccchhhhhcccccccccc
Q psy9494 92 DFREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEEN-VLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKH 168 (314)
Q Consensus 92 ~~~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~-a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~~~ 168 (314)
...+.+.+ ++||||||+|||+|+|||++++++||+|||+++ ++|++||+++|
T Consensus 79 ~~~~l~~~l~~~~kPvIAav~G~a~GgG~~lal~~D~rva~~~~a~f~~pe~~~G------------------------- 133 (229)
T PRK06213 79 AGSTLARRLLSHPKPVIVACTGHAIAKGAFLLLSADYRIGVHGPFKIGLNEVAIG------------------------- 133 (229)
T ss_pred HHHHHHHHHHcCCCCEEEEEcCeeeHHHHHHHHhCCeeeEecCCcEEECchhhhC-------------------------
Confidence 22233333 899999999999999999999999999999999 99999999999
Q ss_pred cccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHHhCCHH-H
Q psy9494 169 SLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQS-M 247 (314)
Q Consensus 169 ~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~~~-~ 247 (314)
++|..+++.++++++|+.++++++++|++++|+||+++||||+++|++++.+++.++++++++.||. +
T Consensus 134 -----------l~~~~~~~~~l~~~~g~~~a~~lll~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~ 202 (229)
T PRK06213 134 -----------MTMPHAAIELARDRLTPSAFQRAVINAEMFDPEEAVAAGFLDEVVPPEQLLARAQAAARELAGLNMGAH 202 (229)
T ss_pred -----------CcCChHHHHHHHHHcCHHHHHHHHHcCcccCHHHHHHCCCceeccChHHHHHHHHHHHHHHhcCCHHHH
Confidence 5555677888999999999999999999999999999999999999999999999999999999999 9
Q ss_pred HHHHHHHHhhhhchHH
Q psy9494 248 LADRATVLSECETCRE 263 (314)
Q Consensus 248 ~~~K~~~~~~~~~~~~ 263 (314)
+.+|+.++........
T Consensus 203 ~~~K~~l~~~~~~~l~ 218 (229)
T PRK06213 203 AATKLKVRAAALEAIR 218 (229)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999876544433
No 74
>KOG1679|consensus
Probab=100.00 E-value=1.4e-43 Score=315.25 Aligned_cols=239 Identities=26% Similarity=0.394 Sum_probs=205.7
Q ss_pred ccEEEEE----eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcC-CCCccccCCcccccCCCCch-
Q psy9494 15 SSVCTKK----ILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQ-EGNFCSGFDLHELDENPDTK- 88 (314)
Q Consensus 15 ~~v~~~~----~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~- 88 (314)
+.|.+++ +.||..|-||||.+.|+|+..|+++|.++++++..|+.+|+|+|++. ++.||+|+||++-..++..+
T Consensus 27 ~Ev~v~~L~g~~~GItvl~mNRpa~kNsl~r~~~~~l~~~l~~lk~D~~~RvvilrS~vpgvFCaGADLKER~~Ms~~Ev 106 (291)
T KOG1679|consen 27 NEVFVRRLTGKDEGITILNMNRPAKKNSLGRVFVKQLREVLDELKYDNKVRVVILRSLVPGVFCAGADLKERKTMSPSEV 106 (291)
T ss_pred ceeeeeeccCCCCCeEEEecCChhhhccHHHHHHHHHHHHHHHHhhCCceeEEEEecCCCceeecCcchHhhhcCCHHHH
Confidence 3455554 56899999999999999999999999999999999999999999976 68999999999988776544
Q ss_pred --hHHHHHHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhcccccc
Q psy9494 89 --LFDDFREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRT 164 (314)
Q Consensus 89 --~~~~~~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~ 164 (314)
+...++..+.. ++|.||||+|+|.|+|||+++|++||+|+|+.+++||++|++++
T Consensus 107 ~~fV~~lR~~~~dIe~Lp~P~IAAidG~ALGGGLElALACDiRva~s~akmGLvET~la--------------------- 165 (291)
T KOG1679|consen 107 TRFVNGLRGLFNDIERLPQPVIAAIDGAALGGGLELALACDIRVAASSAKMGLVETKLA--------------------- 165 (291)
T ss_pred HHHHHHHHHHHHHHHhCCccceehhcchhcccchhhhhhccceehhhhcccccccccee---------------------
Confidence 23334444443 99999999999999999999999999999999999999999999
Q ss_pred cccccccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCC----chHHHHHHHHHHH
Q psy9494 165 QLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCG----TAVGEAMTRAIQM 240 (314)
Q Consensus 165 ~~~~~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~----~l~~~a~~~a~~l 240 (314)
+.|+.|+++||+|.+|.+.|+++++||+.+++.||...||||++|..+ ...+.+.++|++|
T Consensus 166 ---------------iiPGaGGtQRLpR~vg~alaKELIftarvl~g~eA~~lGlVnhvv~qneegdaa~~kal~lA~ei 230 (291)
T KOG1679|consen 166 ---------------IIPGAGGTQRLPRIVGVALAKELIFTARVLNGAEAAKLGLVNHVVEQNEEGDAAYQKALELAREI 230 (291)
T ss_pred ---------------eecCCCccchhHHHHhHHHHHhHhhhheeccchhHHhcchHHHHHhcCccccHHHHHHHHHHHHh
Confidence 677999999999999999999999999999999999999999999864 6778899999999
Q ss_pred HhCCHH-HHHHHHHHHhhhhchHHHH-HHHHHH----------HHhhhHHHHHHhcCCCCCCCC
Q psy9494 241 SKLSQS-MLADRATVLSECETCREEW-MSERKH----------YIGISFELKFLQKKKKAKNGH 292 (314)
Q Consensus 241 a~~~~~-~~~~K~~~~~~~~~~~~~~-~~~~~~----------~~~~~~~~af~ekr~p~~~~~ 292 (314)
....|. ++.+|..++...+...... ..|+.. .+++ .+|.|||+|.|+|.
T Consensus 231 lp~gPiavr~aKlAIn~G~evdiasgl~iEe~CYaq~i~t~drLegl---aaf~ekr~p~y~G~ 291 (291)
T KOG1679|consen 231 LPQGPIAVRLAKLAINLGMEVDIASGLSIEEMCYAQIIPTKDRLEGL---AAFKEKRKPEYKGE 291 (291)
T ss_pred ccCCchhhhHHHHHhccCceecccccccHHHHHHHhcCcHHHHHHHH---HHHHhhcCCCcCCC
Confidence 999999 9999999998776543332 222222 2222 59999999999984
No 75
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=100.00 E-value=1e-41 Score=356.08 Aligned_cols=192 Identities=21% Similarity=0.283 Sum_probs=172.0
Q ss_pred cEEEEE-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCC--Cch----
Q psy9494 16 SVCTKK-ILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENP--DTK---- 88 (314)
Q Consensus 16 ~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~--~~~---- 88 (314)
.+.++. +++|++||||||++.|++|.+|+++|.+++++++.|+++|+|||||.|++||+|+|++++.... ...
T Consensus 7 ~i~~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~ 86 (715)
T PRK11730 7 TLQVDWLEDGIAELVFDAPGSVNKLDRATLASLGEALDALEAQSDLKGLLLTSAKDAFIVGADITEFLSLFAAPEEELSQ 86 (715)
T ss_pred eEEEEEcCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCcEEEEEECCCCccccCcCHHHHhhhccCCHHHHHH
Confidence 567774 7899999999999999999999999999999999999999999999999999999999875321 111
Q ss_pred hHHHHHHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhcccccccc
Q psy9494 89 LFDDFREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQL 166 (314)
Q Consensus 89 ~~~~~~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~ 166 (314)
......+.+.. ++||||||+|||+|+|||++|+++||+|||+++++|++||+++|
T Consensus 87 ~~~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~LAlacD~ria~~~a~f~~pe~~lG----------------------- 143 (715)
T PRK11730 87 WLHFANSIFNRLEDLPVPTVAAINGYALGGGCECVLATDYRVASPDARIGLPETKLG----------------------- 143 (715)
T ss_pred HHHHHHHHHHHHHcCCCCEEEEECCEeehHHHHHHHhCCEEEEcCCCEEeCchhhcC-----------------------
Confidence 11112222222 89999999999999999999999999999999999999999999
Q ss_pred cccccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHHhC
Q psy9494 167 KHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKL 243 (314)
Q Consensus 167 ~~~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~ 243 (314)
+.|++|++++|++++|..+|++++++|++++|+||+++||||+++|++++.+++.+++++++..
T Consensus 144 -------------l~p~~g~~~~L~rlvG~~~A~~llltG~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~ 207 (715)
T PRK11730 144 -------------IMPGFGGTVRLPRLIGADNALEWIAAGKDVRAEDALKVGAVDAVVAPEKLQEAALALLKQAIAG 207 (715)
T ss_pred -------------CCCCchHHHHHHHhcCHHHHHHHHHcCCcCCHHHHHHCCCCeEecCHHHHHHHHHHHHHHHhhc
Confidence 7778999999999999999999999999999999999999999999999999999999999865
No 76
>PLN02267 enoyl-CoA hydratase/isomerase family protein
Probab=100.00 E-value=8.2e-42 Score=314.34 Aligned_cols=204 Identities=19% Similarity=0.276 Sum_probs=173.9
Q ss_pred EEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCcc-EEEEEcCCCCccccCCcccccCCCC-chh----H
Q psy9494 17 VCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESP-LAILYGQEGNFCSGFDLHELDENPD-TKL----F 90 (314)
Q Consensus 17 v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr-~vVltg~g~~F~aG~Dl~~~~~~~~-~~~----~ 90 (314)
+.++++++|++|+||||++ |++|.+|+++|.++++++++|++++ +||++|.|++||+|+|++++..... ... .
T Consensus 2 ~~~~~~~~v~~i~Lnrp~~-Nal~~~~~~eL~~al~~~~~d~~~~~vVV~~g~g~~FsaG~Dl~~~~~~~~~~~~~~~~~ 80 (239)
T PLN02267 2 CTLEKRGNLFILTLTGDGE-HRLNPTLIDSIRSALRQVKSQATPGSVLITTAEGKFFSNGFDLAWAQAAGSAPSRLHLMV 80 (239)
T ss_pred ceeEecCCEEEEEeCCCCc-CcCCHHHHHHHHHHHHHHHhCCCCceEEEEcCCCCceeCCcCHHHHhccccCHHHHHHHH
Confidence 4677889999999999986 9999999999999999999999875 7778899999999999998643211 111 1
Q ss_pred HHHHHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEe-CCeEeeccccccccccccccccchhhhhccccccccc
Q psy9494 91 DDFREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVE-ENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLK 167 (314)
Q Consensus 91 ~~~~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~-~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~~ 167 (314)
..+.+.+.. ++||||||+|||+|+|||++|+++||+|||+ ++++|++||.++|
T Consensus 81 ~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~~G------------------------ 136 (239)
T PLN02267 81 AKLRPLVADLISLPMPTIAAVTGHASAAGFILALSHDYVLMRKDRGVLYMSEVDIG------------------------ 136 (239)
T ss_pred HHHHHHHHHHhcCCCCEEEEECCcchHHHHHHHHHCCEEEecCCCCeEeccccccC------------------------
Confidence 112223332 8999999999999999999999999999998 5679999999999
Q ss_pred ccccccccccccCC-CCchHHHHHHHHhhHHHH-HHHHhcCCCCCHHHHHHCCCceeeeCC-CchHHHHHHHHHHHHhCC
Q psy9494 168 HSLRDNLSRDLAIP-TCDVTIRRLGQMIGTSRT-MDMISLGRHITAREALDWGLCNKMVNC-GTAVGEAMTRAIQMSKLS 244 (314)
Q Consensus 168 ~~~~~~~~~~~~~~-p~~g~~~~l~~~vG~~~a-~~lll~G~~~sA~eA~~~GLV~~vv~~-~~l~~~a~~~a~~la~~~ 244 (314)
++ |++ ++.++++++|..++ ++++++|++++|+||+++||||+++++ +++.+++.++|++|++.+
T Consensus 137 ------------l~~p~~-~~~~l~~~vG~~~a~~~llltG~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~A~~ia~~~ 203 (239)
T PLN02267 137 ------------LPLPDY-FMALLRAKIGSPAARRDVLLRAAKLTAEEAVEMGIVDSAHDSAEETVEAAVRLGEELAARK 203 (239)
T ss_pred ------------CCCChH-HHHHHHHHcChHHHHHHHHHcCCcCCHHHHHHCCCcceecCCHHHHHHHHHHHHHHHhhcc
Confidence 54 544 57899999999999 699999999999999999999999985 689999999999999874
Q ss_pred H--H-HHHHHHHHHhhh
Q psy9494 245 Q--S-MLADRATVLSEC 258 (314)
Q Consensus 245 ~--~-~~~~K~~~~~~~ 258 (314)
+ . +..+|+.++.+.
T Consensus 204 ~~~~~~~~~k~~~~~~~ 220 (239)
T PLN02267 204 WNGEVYASIRKSLLPEV 220 (239)
T ss_pred CcccHHHHHHHHHHHHH
Confidence 4 4 999999988765
No 77
>PLN02988 3-hydroxyisobutyryl-CoA hydrolase
Probab=100.00 E-value=4.5e-41 Score=328.16 Aligned_cols=203 Identities=18% Similarity=0.249 Sum_probs=176.4
Q ss_pred ccEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCC-Cch--hHH
Q psy9494 15 SSVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENP-DTK--LFD 91 (314)
Q Consensus 15 ~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~-~~~--~~~ 91 (314)
..|.++++++|++||||||++.|+||.+|+.+|.+++++++.|++|++|||+|.|++||+|+|++++.... ... ...
T Consensus 9 ~~v~~~~~~~i~~ItLnRP~~lNALs~~m~~~L~~al~~~~~d~~v~~VVl~G~G~~FcAGgDl~~l~~~~~~~~~~~~~ 88 (381)
T PLN02988 9 SQVLVEEKSSVRILTLNRPKQLNALSFHMISRLLQLFLAFEEDPSVKLVILKGHGRAFCAGGDVAAVVRDIEQGNWRLGA 88 (381)
T ss_pred CceEEEEECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCeeEEEEECCCCCcccCcCHHHHHhhhcccchhHHH
Confidence 36888889999999999999999999999999999999999999999999999999999999999875321 111 011
Q ss_pred H-HH---HHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhccccccc
Q psy9494 92 D-FR---EFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQ 165 (314)
Q Consensus 92 ~-~~---~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~ 165 (314)
. +. ..... ++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|
T Consensus 89 ~~f~~~~~l~~~i~~~pKPvIa~v~G~a~GGG~~Lal~~D~rvate~a~f~mPE~~iG---------------------- 146 (381)
T PLN02988 89 NFFSDEYMLNYVMATYSKAQVSILNGIVMGGGAGVSVHGRFRIATENTVFAMPETALG---------------------- 146 (381)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEecCeEeehhhHHhhcCCeEEEcCCcEEeChhhhcC----------------------
Confidence 1 11 11111 89999999999999999999999999999999999999999999
Q ss_pred ccccccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHHhCCH
Q psy9494 166 LKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQ 245 (314)
Q Consensus 166 ~~~~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~~ 245 (314)
+.|+.|++++|++++|. .+++|++||++++|+||+++|||+++++.+++.+.+.+++ +++..+|
T Consensus 147 --------------l~Pd~G~s~~L~rl~G~-~~~~l~LTG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~la-~~~~~~p 210 (381)
T PLN02988 147 --------------LFPDVGASYFLSRLPGF-FGEYVGLTGARLDGAEMLACGLATHFVPSTRLTALEADLC-RIGSNDP 210 (381)
T ss_pred --------------cCCCccHHHHHHHHHHH-HHHHHHHcCCCCCHHHHHHcCCceEecCHhHHHHHHHHHH-HhhccCH
Confidence 77789999999999997 6899999999999999999999999999999999888888 7777777
Q ss_pred H-HHHHHHHHH
Q psy9494 246 S-MLADRATVL 255 (314)
Q Consensus 246 ~-~~~~K~~~~ 255 (314)
. +..+|+.+.
T Consensus 211 ~~~~~~~~~~~ 221 (381)
T PLN02988 211 TFASTILDAYT 221 (381)
T ss_pred HHHHHHHHHhh
Confidence 7 777776554
No 78
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=100.00 E-value=4e-40 Score=343.93 Aligned_cols=190 Identities=24% Similarity=0.414 Sum_probs=167.6
Q ss_pred cccEEEEE-eCCEEEEEEcCC-CCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCC-CCccccCCcccccCCCCchhH
Q psy9494 14 VSSVCTKK-ILNITLISLNRP-DKINAINLKTLDALQENIKRFEDDTESPLAILYGQE-GNFCSGFDLHELDENPDTKLF 90 (314)
Q Consensus 14 ~~~v~~~~-~~~v~~itlnrp-~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~~~ 90 (314)
.+.+.+++ +++|++|||||| ++.|++|.+|+++|.+++++++.|+++|+|||+|.+ ++||+|+|++++.........
T Consensus 4 ~~~~~~~~~~~~va~itlnrp~~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~~~~~~~F~aG~Dl~~~~~~~~~~~~ 83 (708)
T PRK11154 4 ASAFTLNVREDNIAVITIDVPGEKMNTLKAEFAEQVRAILKQLREDKELKGVVFISGKPDNFIAGADINMLAACKTAQEA 83 (708)
T ss_pred CceEEEEEcCCCEEEEEECCCCCCCcCCCHHHHHHHHHHHHHHHhCCCceEEEEecCCCCCcccCcChHHhhccCCHHHH
Confidence 34567777 789999999999 689999999999999999999999999999999874 899999999987542211111
Q ss_pred ----HHHHHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCe--Eeeccccccccccccccccchhhhhcccc
Q psy9494 91 ----DDFREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENV--LMGFYNRRFVYLKDSLLSSGVVLYALHVP 162 (314)
Q Consensus 91 ----~~~~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a--~f~~pe~~~G~~~~~~~~~g~~~~~~~~~ 162 (314)
....+.+.. ++||||||+|||+|+|||++|+++||+|||++++ +|++||+++|
T Consensus 84 ~~~~~~~~~~~~~i~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~a~fg~pe~~lG------------------- 144 (708)
T PRK11154 84 EALARQGQQLFAEIEALPIPVVAAIHGACLGGGLELALACHYRVCTDDPKTVLGLPEVQLG------------------- 144 (708)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEECCeeechHHHHHHhCCEEEEeCCCCceEeCccccCC-------------------
Confidence 112223333 8999999999999999999999999999999974 8999999999
Q ss_pred cccccccccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHH
Q psy9494 163 RTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQ 239 (314)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~ 239 (314)
+.|++|++++|++++|..+|++|+++|++++|+||+++||||++++++++.++|.++|++
T Consensus 145 -----------------l~p~~gg~~~L~r~vG~~~A~~llltG~~i~a~eA~~~GLv~~vv~~~~l~~~a~~~A~~ 204 (708)
T PRK11154 145 -----------------LLPGSGGTQRLPRLIGVSTALDMILTGKQLRAKQALKLGLVDDVVPHSILLEVAVELAKK 204 (708)
T ss_pred -----------------CCCCccHHhHHHhhcCHHHHHHHHHhCCcCCHHHHHHCCCCcEecChHHHHHHHHHHHHh
Confidence 777899999999999999999999999999999999999999999999999999999988
No 79
>TIGR03200 dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase. Members of this protein family are 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a ring-hydrolyzing enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=100.00 E-value=2.1e-40 Score=318.56 Aligned_cols=196 Identities=16% Similarity=0.216 Sum_probs=171.9
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCC-CCccccCCcccccCCC--Cc-hh---HHHHHHHH
Q psy9494 25 ITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQE-GNFCSGFDLHELDENP--DT-KL---FDDFREFL 97 (314)
Q Consensus 25 v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~--~~-~~---~~~~~~~~ 97 (314)
+++|+||||+++|++|.+|+.+|.+++++++.|+++|+|||||.| ++||+|+|++++.... .. .. ...+.+.+
T Consensus 38 ~A~ItLNRP~k~NAls~~ml~eL~~al~~~~~D~dVrvVVLTG~G~kaFCAG~DLke~~~~~~~~~~~~~~~~~~~~~l~ 117 (360)
T TIGR03200 38 NAWIILDNPKQYNSYTTDMVKAIILAFRRASSDRDVVAVVFTAVGDKAFCTGGNTKEYAEYYAGNPQEYRQYMRLFNDMV 117 (360)
T ss_pred EEEEEECCCCccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCcCHHHHhhhcccChhHHHHHHHHHHHHH
Confidence 566999999999999999999999999999999999999999999 6999999999875421 11 11 11122223
Q ss_pred hc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhccccccccccccccccc
Q psy9494 98 QK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLS 175 (314)
Q Consensus 98 ~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 175 (314)
.. .++|||||+|||+|+|||++|+++||+|||+++++|++||+++|
T Consensus 118 ~~i~~~pKPVIAAVnG~AiGGGleLALaCDlrIAse~A~Fg~PE~rlG-------------------------------- 165 (360)
T TIGR03200 118 SAILGCDKPVICRVNGMRIGGGQEIGMAADFTIAQDLANFGQAGPKHG-------------------------------- 165 (360)
T ss_pred HHHHhCCCCEEEEECCEeeeHHHHHHHhCCEEEEcCCCEEeCchhccC--------------------------------
Confidence 22 89999999999999999999999999999999999999999999
Q ss_pred ccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCch------------HHHHHHHHHHHHhC
Q psy9494 176 RDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTA------------VGEAMTRAIQMSKL 243 (314)
Q Consensus 176 ~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l------------~~~a~~~a~~la~~ 243 (314)
+.|++|++++|++++|..+|++++++|++++|+||+++|||++++|++++ ++.+.++++.+...
T Consensus 166 ----l~P~~Ggt~rLprlvG~~rA~~llltGe~~sA~EA~~~GLVd~VVp~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 241 (360)
T TIGR03200 166 ----SAPIGGATDFLPLMIGCEQAMVSGTLCEPWSAHKAKRLGIIMDVVPALKVDGKFVANPLVVTDRYLDEFGRIVHGE 241 (360)
T ss_pred ----CCCCccHHHHHHHhhCHHHHHHHHHhCCcCcHHHHHHcCChheecCchhcCcchhcCcccchHHHHHHHhHHhcCC
Confidence 78889999999999999999999999999999999999999999999888 78888889888877
Q ss_pred CHH---HHHHHHHHHh
Q psy9494 244 SQS---MLADRATVLS 256 (314)
Q Consensus 244 ~~~---~~~~K~~~~~ 256 (314)
++. +.+.|.++..
T Consensus 242 ~~~~~~~~~~k~~~~~ 257 (360)
T TIGR03200 242 FKAGDELKAGKELIKQ 257 (360)
T ss_pred CcchhHHHHHHHHHhc
Confidence 665 7778877665
No 80
>KOG1681|consensus
Probab=100.00 E-value=4.7e-41 Score=301.38 Aligned_cols=213 Identities=24% Similarity=0.379 Sum_probs=185.4
Q ss_pred cccEEEEE---eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCC-----
Q psy9494 14 VSSVCTKK---ILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENP----- 85 (314)
Q Consensus 14 ~~~v~~~~---~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~----- 85 (314)
++++.+.+ ++-|.++.||||.|.|++|..|+.|+.++++.+.+||++|+|||+|+|++||+|+|++.+....
T Consensus 18 ~ksl~v~vk~~~~~V~hv~lnRPsk~Nal~~~~w~E~~~cf~~l~~dpdcr~iilsg~GKhFcaGIDl~~~~~~~~~~~~ 97 (292)
T KOG1681|consen 18 YKSLEVSVKSAQPFVYHVQLNRPSKLNALNKVFWREFKECFDSLDRDPDCRAIILSGAGKHFCAGIDLNDMASDRILQPE 97 (292)
T ss_pred cceeeeeecCCCCeEEEEEecCcchhhhhhHHHHHHHHHHHHhhccCCCceEEEEecCCcceecccCcchhhhhhccccc
Confidence 45444442 4569999999999999999999999999999999999999999999999999999988764321
Q ss_pred Cch------hHHHHHHHHhc------CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccc
Q psy9494 86 DTK------LFDDFREFLQK------PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSG 153 (314)
Q Consensus 86 ~~~------~~~~~~~~~~~------~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g 153 (314)
..+ ....+...++. +||||||++|+|+|+|+|+.|..+||+|+|+++|.|+.-|+.+|
T Consensus 98 ~dd~aR~g~~lrr~Ik~~Q~~~t~ie~CpKPVIaavHg~CiGagvDLiTAcDIRycsqDAffsvkEVDvg---------- 167 (292)
T KOG1681|consen 98 GDDVARKGRSLRRIIKRYQDTFTAIERCPKPVIAAVHGACIGAGVDLITACDIRYCSQDAFFSVKEVDVG---------- 167 (292)
T ss_pred cchHhhhhHHHHHHHHHHHHHHHHHHhCChhHHHHHHhhhccccccceeecceeeecccceeeeeeeeee----------
Confidence 111 11122222222 99999999999999999999999999999999999999999999
Q ss_pred hhhhhcccccccccccccccccccccCCCCchHHHHHHHHhh-HHHHHHHHhcCCCCCHHHHHHCCCceeeeCC-CchHH
Q psy9494 154 VVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIG-TSRTMDMISLGRHITAREALDWGLCNKMVNC-GTAVG 231 (314)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~g~~~~l~~~vG-~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~-~~l~~ 231 (314)
+..+-|...|||+.+| .+.++++.+|+++|+|.||++.|||++|+|+ ++++.
T Consensus 168 --------------------------laADvGTL~RlpkvVGn~s~~~elafTar~f~a~EAl~~GLvSrvf~dk~~ll~ 221 (292)
T KOG1681|consen 168 --------------------------LAADVGTLNRLPKVVGNQSLARELAFTARKFSADEALDSGLVSRVFPDKEELLN 221 (292)
T ss_pred --------------------------hhhchhhHhhhhHHhcchHHHHHHHhhhhhcchhhhhhcCcchhhcCCHHHHHh
Confidence 7778899999999999 8999999999999999999999999999997 78999
Q ss_pred HHHHHHHHHHhCCHH-HHHHHHHHHhhhhchH
Q psy9494 232 EAMTRAIQMSKLSQS-MLADRATVLSECETCR 262 (314)
Q Consensus 232 ~a~~~a~~la~~~~~-~~~~K~~~~~~~~~~~ 262 (314)
.+..+|+.|+.++|. ++.+|..++...+...
T Consensus 222 ~~l~mA~~Ia~KSpvaVqgTK~~L~ysrehsv 253 (292)
T KOG1681|consen 222 GALPMAELIASKSPVAVQGTKENLLYSREHSV 253 (292)
T ss_pred hhHHHHHHhccCCceeeechHHHHHHHhhhhh
Confidence 999999999999999 9999998876655443
No 81
>COG0447 MenB Dihydroxynaphthoic acid synthase [Coenzyme metabolism]
Probab=100.00 E-value=2.2e-40 Score=295.21 Aligned_cols=240 Identities=26% Similarity=0.370 Sum_probs=200.8
Q ss_pred hccccEEEEEe-CCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcC--C-CCccccCCcccccCC---
Q psy9494 12 RLVSSVCTKKI-LNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQ--E-GNFCSGFDLHELDEN--- 84 (314)
Q Consensus 12 ~~~~~v~~~~~-~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~--g-~~F~aG~Dl~~~~~~--- 84 (314)
..++.|.+++. ++|+.||+|||+++|++.+.++.|+.++|..+..|++|.+|||||+ | .+||+|.|-+--...
T Consensus 15 ~~y~dI~Y~~~~~giakItinRPevrNAfrP~TV~Em~~Af~~Ar~d~~vGvi~lTG~~~G~~AFCsGGDQ~vRg~~~gY 94 (282)
T COG0447 15 EGYEDITYEKSVDGIAKITINRPEVRNAFRPKTVDEMIDAFADARDDPNVGVILLTGNGDGDKAFCSGGDQKVRGDSGGY 94 (282)
T ss_pred CCcceeEEeeccCceEEEEecChhhhccCCCccHHHHHHHHHhhhcCCCccEEEEecCCCCCeeeecCCCceecccCCCc
Confidence 35788999997 9999999999999999999999999999999999999999999985 4 799999998654331
Q ss_pred CCchh-----HHHHHHHHhcCCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhc
Q psy9494 85 PDTKL-----FDDFREFLQKPAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYAL 159 (314)
Q Consensus 85 ~~~~~-----~~~~~~~~~~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~ 159 (314)
.+.+. .-++.++++ .+||||||.|+|+|+|||-.|-+.||+.||+++|+|+..-.++|
T Consensus 95 ~~d~~~~rLnvLdlQrlIR-~~PKpViA~V~G~AiGGGhvlhvvCDLTiAa~nA~FgQTgp~VG---------------- 157 (282)
T COG0447 95 VDDDGIPRLNVLDLQRLIR-TMPKPVIAMVAGYAIGGGHVLHVVCDLTIAADNAIFGQTGPKVG---------------- 157 (282)
T ss_pred cCCccCcccchhhHHHHHH-hCCcceEEEEeeEeccCccEEEEEeeeeeehhcchhcCCCCCcc----------------
Confidence 11111 112333333 99999999999999999999999999999999999999999999
Q ss_pred ccccccccccccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHH
Q psy9494 160 HVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQ 239 (314)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~ 239 (314)
-.-++.++..|.|+||..+|+|+.+.+|.++|+||+++|+||.|||.++|.+++.+|+++
T Consensus 158 --------------------SFD~G~Gs~ylar~VGqKkArEIwfLcR~Y~A~eal~MGlVN~Vvp~~~LE~e~v~W~~E 217 (282)
T COG0447 158 --------------------SFDGGYGSSYLARIVGQKKAREIWFLCRQYDAEEALDMGLVNTVVPHADLEKETVQWARE 217 (282)
T ss_pred --------------------cccCcccHHHHHHHhhhhhhHHhhhhhhhccHHHHHhcCceeeeccHHHHHHHHHHHHHH
Confidence 222344566799999999999999999999999999999999999999999999999999
Q ss_pred HHhCCHH-HHHHHHHHHhhhhch--HHHHHHH--------HHHHHhhhHHHHHHhcCCCCCCC
Q psy9494 240 MSKLSQS-MLADRATVLSECETC--REEWMSE--------RKHYIGISFELKFLQKKKKAKNG 291 (314)
Q Consensus 240 la~~~~~-~~~~K~~~~~~~~~~--~~~~~~~--------~~~~~~~~~~~af~ekr~p~~~~ 291 (314)
|.++||. +++.|..++..++.. .+++.-+ ++..++ ..||+|||+|.|..
T Consensus 218 ~l~kSP~AlR~LK~Afnad~DGlaG~q~~ag~at~L~YmTdEa~EG---r~AF~eKR~Pdf~~ 277 (282)
T COG0447 218 MLAKSPTALRMLKAAFNADCDGLAGLQELAGNATLLYYMTDEAQEG---RDAFLEKRKPDFSK 277 (282)
T ss_pred HHhcChHHHHHHHHHhcCCCchhhHHHHhcccceEEEEechhhhhh---HHHHhhccCCChHh
Confidence 9999999 999999999887653 2332111 122222 35999999999864
No 82
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=100.00 E-value=3.9e-39 Score=335.99 Aligned_cols=183 Identities=25% Similarity=0.426 Sum_probs=162.4
Q ss_pred EEeCCEEEEEEcCC-CCCCCCCHHHHHHHHHHHHHhhhCCCccEEEE-EcCCCCccccCCcccccCCCCchhH----HHH
Q psy9494 20 KKILNITLISLNRP-DKINAINLKTLDALQENIKRFEDDTESPLAIL-YGQEGNFCSGFDLHELDENPDTKLF----DDF 93 (314)
Q Consensus 20 ~~~~~v~~itlnrp-~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVl-tg~g~~F~aG~Dl~~~~~~~~~~~~----~~~ 93 (314)
+.+++|++|||||| ++.|++|.+|+.+|.+++++++.|+++|+||| +|.|++||+|+|++++......... ...
T Consensus 6 ~~~~~Va~itlnrp~~~~Nal~~~~~~eL~~~l~~~~~d~~vr~VVl~~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~ 85 (699)
T TIGR02440 6 VREDGIAILTIDVPGEKMNTLKAEFADQVSEILSQLKRDKSIRGLVLVSGKPDNFIAGADISMLAACQTAGEAKALAQQG 85 (699)
T ss_pred EcCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCceeeccCchhhhccCChhHHHHHHHHH
Confidence 45789999999999 69999999999999999999999999999986 6788999999999987542211111 112
Q ss_pred HHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCC--eEeeccccccccccccccccchhhhhccccccccccc
Q psy9494 94 REFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEEN--VLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHS 169 (314)
Q Consensus 94 ~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~--a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~~~~ 169 (314)
.+.+.. ++||||||+|||+|+|||++|+++||+|||+++ ++|++||+++|
T Consensus 86 ~~~~~~l~~~~kPvIAaVnG~a~GgG~~LaLacD~ria~~~~~a~fg~pev~lG-------------------------- 139 (699)
T TIGR02440 86 QVLFAELEALPIPVVAAIHGACLGGGLELALACHSRVCSDDDKTVLGLPEVQLG-------------------------- 139 (699)
T ss_pred HHHHHHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEcCCCCcEEechhhccc--------------------------
Confidence 222222 899999999999999999999999999999986 79999999999
Q ss_pred ccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHH
Q psy9494 170 LRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAI 238 (314)
Q Consensus 170 ~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~ 238 (314)
+.|++|++++|++++|..+|++++++|+.++|+||+++||||+++|+++++++|.++|+
T Consensus 140 ----------l~p~~g~~~~L~r~vG~~~A~~llltG~~~~a~eA~~~GLV~~vv~~~~l~~~a~~~A~ 198 (699)
T TIGR02440 140 ----------LLPGSGGTQRLPRLIGVSTALDMILTGKQLRAKQALKLGLVDDVVPQSILLDTAVEMAL 198 (699)
T ss_pred ----------CCCCccHHHHHHHhcCHHHHHHHHHcCCcCCHHHHHhCCCCcEecChhHHHHHHHHHHH
Confidence 77789999999999999999999999999999999999999999999999999999998
No 83
>PLN02851 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=100.00 E-value=6.1e-39 Score=314.89 Aligned_cols=193 Identities=17% Similarity=0.218 Sum_probs=165.8
Q ss_pred ccccEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCC---chh
Q psy9494 13 LVSSVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPD---TKL 89 (314)
Q Consensus 13 ~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~---~~~ 89 (314)
..+.|.++.++++++||||||+++|+||.+|+.+|.++++.++.|+++++|||+|.|++||+|+|++++..... ...
T Consensus 40 ~~~~v~~e~~~~~~~ItLNRP~~lNALs~~m~~eL~~al~~~~~D~~vrvVVL~G~GkaFcAGgDl~~l~~~~~~~~~~~ 119 (407)
T PLN02851 40 LQDQVLVEGRAKSRAAILNRPSSLNALTIPMVARLKRLYESWEENPDIGFVLMKGSGRAFCSGADVVSLYHLINEGNVEE 119 (407)
T ss_pred CCCCeEEEEECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCccCCcCHHHHHhhccccchHH
Confidence 44568899999999999999999999999999999999999999999999999999999999999998754211 111
Q ss_pred HHH----HHHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhccccc
Q psy9494 90 FDD----FREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPR 163 (314)
Q Consensus 90 ~~~----~~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~ 163 (314)
... ..++... ++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|
T Consensus 120 ~~~~f~~~~~l~~~i~~~pKPvIA~v~G~amGGG~gLal~~D~rVate~a~famPE~~iG-------------------- 179 (407)
T PLN02851 120 CKLFFENLYKFVYLQGTYLKPNVAIMDGITMGCGAGISIPGMFRVVTDKTVFAHPEVQMG-------------------- 179 (407)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEEcCEEeeHHHHHHHhCCEEEEeCCceEecchhccC--------------------
Confidence 111 1122212 89999999999999999999999999999999999999999999
Q ss_pred ccccccccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHHhC
Q psy9494 164 TQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKL 243 (314)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~ 243 (314)
+.|+.|++++|++++|.. ++++++||++++|+||+++||+++++|.+++ +.+.+.+.++...
T Consensus 180 ----------------l~PdvG~s~~L~rl~g~~-g~~L~LTG~~i~a~eA~~~GLa~~~v~~~~l-~~l~~~l~~~~~~ 241 (407)
T PLN02851 180 ----------------FHPDAGASYYLSRLPGYL-GEYLALTGQKLNGVEMIACGLATHYCLNARL-PLIEERLGKLLTD 241 (407)
T ss_pred ----------------CCCCccHHHHHHHhcCHH-HHHHHHhCCcCCHHHHHHCCCceeecCHhhH-HHHHHHHHhhccC
Confidence 677899999999999974 9999999999999999999999999999876 5555555555433
No 84
>cd06558 crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole.
Probab=100.00 E-value=9.1e-39 Score=282.27 Aligned_cols=188 Identities=32% Similarity=0.558 Sum_probs=169.3
Q ss_pred EEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCch-----hHH
Q psy9494 17 VCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTK-----LFD 91 (314)
Q Consensus 17 v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~-----~~~ 91 (314)
+.++++++|++|+||+|++.|++|.+|+++|.++++.++.|+++++|||||.|+.||+|.|++++....... ...
T Consensus 1 i~~~~~~~i~~i~l~~~~~~N~~~~~~~~~l~~~l~~~~~d~~~~~vvl~~~~~~Fs~G~dl~~~~~~~~~~~~~~~~~~ 80 (195)
T cd06558 1 VLVERDGGVATITLNRPEKRNALSLEMLDELAAALDEAEADPDVRVVVLTGAGKAFCAGADLKELAALSDAGEEARAFIR 80 (195)
T ss_pred CEEEEECCEEEEEECCccccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceEeCcCHHHHhcccccchhHHHHHH
Confidence 457888999999999999999999999999999999999999999999999999999999999987654321 222
Q ss_pred HHHHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhccccccccccc
Q psy9494 92 DFREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHS 169 (314)
Q Consensus 92 ~~~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~~~~ 169 (314)
.+...+.. .++|||||+|||+|.|+|++++++||+||++++++|++||.++|
T Consensus 81 ~~~~~~~~i~~~~~p~Ia~v~G~a~g~G~~la~~~D~~i~~~~~~~~~pe~~~G-------------------------- 134 (195)
T cd06558 81 ELQELLRALLRLPKPVIAAVNGAALGGGLELALACDIRIAAEDAKFGLPEVKLG-------------------------- 134 (195)
T ss_pred HHHHHHHHHHcCCCCEEEEECCeeecHHHHHHHhCCEEEecCCCEEechhhhcC--------------------------
Confidence 22333333 89999999999999999999999999999999999999999999
Q ss_pred ccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHH
Q psy9494 170 LRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQM 240 (314)
Q Consensus 170 ~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~l 240 (314)
++|+.|+++++++++|..++++++++|+.++|+||+++|||+++++.+++.+++.++++++
T Consensus 135 ----------~~p~~g~~~~l~~~~g~~~a~~~~l~g~~~~a~ea~~~Glv~~~~~~~~l~~~a~~~a~~~ 195 (195)
T cd06558 135 ----------LVPGGGGTQRLPRLVGPARARELLLTGRRISAEEALELGLVDEVVPDEELLAAALELARRL 195 (195)
T ss_pred ----------CCCCCcHHHHHHHHhCHHHHHHHHHcCCccCHHHHHHcCCCCeecChhHHHHHHHHHHhhC
Confidence 6778899999999999999999999999999999999999999999999999999988763
No 85
>KOG0016|consensus
Probab=100.00 E-value=2.2e-38 Score=288.87 Aligned_cols=219 Identities=23% Similarity=0.332 Sum_probs=194.6
Q ss_pred hccccEEEEEeCCEEEEEEc-CCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCchh-
Q psy9494 12 RLVSSVCTKKILNITLISLN-RPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTKL- 89 (314)
Q Consensus 12 ~~~~~v~~~~~~~v~~itln-rp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~- 89 (314)
+.++.+.+++++++.+|.+| ||+|.|+++.+++.+++++|+.+.+|+++..++++|.|++||+|.|+..+....+++.
T Consensus 4 ~~~~~~vv~~~~g~~~I~~~~~Pkk~Nal~~e~y~~i~~al~~a~~dds~~~tv~s~~G~~f~sG~Df~~~~~~~~~d~~ 83 (266)
T KOG0016|consen 4 MRYREIVVTRENGPFFIALNIRPKKKNALNREDYVYIQRALEEANDDDSVSITVLSSNGSYFCSGLDFSPFAKALDDDAN 83 (266)
T ss_pred ccccceEEEecCCcEEEEecCCCcccccccHHHHHHHHHHHHHhhcccceEEEEEecCccEEeeccccchhhhcCCCccc
Confidence 45678899999999999999 9999999999999999999999999999999999999999999999998765433221
Q ss_pred --HHHH-------HHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhh
Q psy9494 90 --FDDF-------REFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYA 158 (314)
Q Consensus 90 --~~~~-------~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~ 158 (314)
.... ..++.. .+|||+||+|||+|+|.|..+...||+++|+++++|.+|+.++|
T Consensus 84 ~~~~~~~~~v~~~~~~v~~fi~f~Kplia~vNGPAIGlgasil~lcD~V~A~Dka~F~TPfa~lG--------------- 148 (266)
T KOG0016|consen 84 EESDKASKFVKNVSCFVNTFINFPKPLVALVNGPAIGLGASILPLCDYVWASDKAWFQTPFAKLG--------------- 148 (266)
T ss_pred ccchhhHHHHHHHHHHHHHHhcCCCCEEEEecCCccchhhHHhhhhheEEeccceEEeccchhcC---------------
Confidence 1111 112222 99999999999999999999999999999999999999999999
Q ss_pred cccccccccccccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHH
Q psy9494 159 LHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAI 238 (314)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~ 238 (314)
+.|++++++.+|+++|...|.||++.|++++|+||.+.|||+++++.+++.+++++.++
T Consensus 149 ---------------------q~PEG~Ss~t~p~imG~~~A~E~ll~~~kltA~Ea~~~glVskif~~~tf~~~v~~~ik 207 (266)
T KOG0016|consen 149 ---------------------QSPEGCSSVTLPKIMGSASANEMLLFGEKLTAQEACEKGLVSKIFPAETFNEEVLKKIK 207 (266)
T ss_pred ---------------------CCCCcceeeeehHhhchhhHHHHHHhCCcccHHHHHhcCchhhhcChHHHHHHHHHHHH
Confidence 77899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCHH-HHHHHHHHHhhhhchHHHHH
Q psy9494 239 QMSKLSQS-MLADRATVLSECETCREEWM 266 (314)
Q Consensus 239 ~la~~~~~-~~~~K~~~~~~~~~~~~~~~ 266 (314)
++++.+|. ++..|++++......+....
T Consensus 208 q~s~l~p~sl~~~K~L~rs~~k~~l~~an 236 (266)
T KOG0016|consen 208 QYSKLSPESLLGMKKLLRSNIKEELIKAN 236 (266)
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999 99999999876544433333
No 86
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=100.00 E-value=2.1e-38 Score=330.94 Aligned_cols=191 Identities=20% Similarity=0.275 Sum_probs=170.0
Q ss_pred cEEEEE-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCC--CCc-h---
Q psy9494 16 SVCTKK-ILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDEN--PDT-K--- 88 (314)
Q Consensus 16 ~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~--~~~-~--- 88 (314)
.+.++. +++|++|+||||++.|++|.+|+.+|.+++++++.|+++|+|||||.|++||+|+|++++... ... .
T Consensus 7 ~i~~~~~~~gva~Itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~ 86 (714)
T TIGR02437 7 TIQVTALEDGIAELKFDAPGSVNKFDRATLASLDQALDAIKAQSSLKGVILTSGKDAFIVGADITEFLGLFALPDAELIQ 86 (714)
T ss_pred eEEEEEccCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCccccCcCHHHHhhcccCCHHHHHH
Confidence 567764 789999999999999999999999999999999999999999999999999999999987532 111 1
Q ss_pred hHHHHHHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhcccccccc
Q psy9494 89 LFDDFREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQL 166 (314)
Q Consensus 89 ~~~~~~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~ 166 (314)
......+.+.+ .+||||||+|||+|+|||++|+++||+|||+++++|++||+++|
T Consensus 87 ~~~~~~~~~~~i~~~pkPvIAai~G~alGGGleLalacD~ria~~~a~fglPEv~lG----------------------- 143 (714)
T TIGR02437 87 WLLFANSIFNKLEDLPVPTVAAINGIALGGGCECVLATDFRIADDTAKIGLPETKLG----------------------- 143 (714)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEECCeeecHHHHHHHhCCEEEEeCCCEEecchhhcC-----------------------
Confidence 11112233333 89999999999999999999999999999999999999999999
Q ss_pred cccccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHHh
Q psy9494 167 KHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSK 242 (314)
Q Consensus 167 ~~~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~ 242 (314)
+.|++|++++|++++|..+|++++++|++++|+||+++||||++++.+++.+++.++++++..
T Consensus 144 -------------l~Pg~Ggt~rL~rliG~~~A~~llltG~~~~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~~~~ 206 (714)
T TIGR02437 144 -------------IMPGFGGTVRLPRVIGADNALEWIASGKENRAEDALKVGAVDAVVTADKLGAAALQLLKDAIN 206 (714)
T ss_pred -------------CCCCccHHHHHHHHhCHHHHHHHHHcCCcCCHHHHHHCCCCcEeeChhHHHHHHHHHHHHHhh
Confidence 777899999999999999999999999999999999999999999999999999999988543
No 87
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=100.00 E-value=3.4e-38 Score=330.26 Aligned_cols=196 Identities=21% Similarity=0.391 Sum_probs=169.0
Q ss_pred hhccccEEEEEeCCEEEEEEcCCC-CCCCCCHHHHHHHHHHHHHhhhCCCccEE-EEEcCCCCccccCCcccccCCCCch
Q psy9494 11 LRLVSSVCTKKILNITLISLNRPD-KINAINLKTLDALQENIKRFEDDTESPLA-ILYGQEGNFCSGFDLHELDENPDTK 88 (314)
Q Consensus 11 ~~~~~~v~~~~~~~v~~itlnrp~-~~Nal~~~~~~eL~~al~~~~~d~~vr~v-Vltg~g~~F~aG~Dl~~~~~~~~~~ 88 (314)
.+.+..+.++++++|++||||||+ +.|++|.+|+.+|.+++++++.|+++|++ |+||.|++||+|+|++++.......
T Consensus 9 ~~~~~~~~~~~~~gVa~itlnrP~~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVvltg~g~~F~aG~Dl~~~~~~~~~~ 88 (737)
T TIGR02441 9 LMARTHRHYEVKGDVAVVKIDSPNSKVNTLSKELFAEFKEVMNELWTNEAIKSAVLISGKPGSFVAGADIQMIAACKTAQ 88 (737)
T ss_pred CCCCCeEEEEEECCEEEEEEcCCCCCCCCCCHHHHHHHHHHHHHHhhCCCCEEEEEEECCCCcceeCcCHHHHhccCChH
Confidence 344567889999999999999998 58999999999999999999999999965 5699999999999999986422111
Q ss_pred hH----HHHHHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCC--eEeeccccccccccccccccchhhhhcc
Q psy9494 89 LF----DDFREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEEN--VLMGFYNRRFVYLKDSLLSSGVVLYALH 160 (314)
Q Consensus 89 ~~----~~~~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~--a~f~~pe~~~G~~~~~~~~~g~~~~~~~ 160 (314)
.. ....+.+.+ ++||||||+|||+|+|||++|+++||+|||+++ ++|++||+++|
T Consensus 89 ~~~~~~~~~~~l~~~i~~~~kPvIAav~G~a~GgG~eLALacD~ria~~~a~a~fglpEv~lG----------------- 151 (737)
T TIGR02441 89 EVTQLSQEGQEMFERIEKSQKPIVAAISGSCLGGGLELALACHYRIATKDRKTLLGLPEVMLG----------------- 151 (737)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEcCCCCCeEecchhhhC-----------------
Confidence 11 122233333 899999999999999999999999999999998 58999999999
Q ss_pred cccccccccccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCC-------------C
Q psy9494 161 VPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNC-------------G 227 (314)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~-------------~ 227 (314)
+.|++|++++|++++|..+|++++++|++++|+||+++||||+++++ +
T Consensus 152 -------------------l~Pg~Ggt~rLprliG~~~A~~l~ltG~~i~a~eA~~~GLVd~vv~~~~~~~~~l~~~~~~ 212 (737)
T TIGR02441 152 -------------------LLPGAGGTQRLPKLTGVPAALDMMLTGKKIRADRAKKMGIVDQLVDPLGPGLKPAEENTIE 212 (737)
T ss_pred -------------------CCCCccHhhhHHHhhCHHHHHHHHHcCCcCCHHHHHHCCCCeEecCCcccccccchhhhHH
Confidence 77789999999999999999999999999999999999999999987 4
Q ss_pred chHHHHHHHHHHHHh
Q psy9494 228 TAVGEAMTRAIQMSK 242 (314)
Q Consensus 228 ~l~~~a~~~a~~la~ 242 (314)
++.+.|.+++++++.
T Consensus 213 ~l~~~A~~~a~~l~~ 227 (737)
T TIGR02441 213 YLEEVAVKFAQGLAN 227 (737)
T ss_pred HHHHHHHHHHHHhhc
Confidence 477888888877653
No 88
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Probab=100.00 E-value=4e-38 Score=318.92 Aligned_cols=199 Identities=15% Similarity=0.239 Sum_probs=173.0
Q ss_pred hccccEEEEEeCCEEEEEEcCCC----------CCCCCCHHHHHHHHHHHHHhh-hCCCccEEEEEcC-CCCccccCCcc
Q psy9494 12 RLVSSVCTKKILNITLISLNRPD----------KINAINLKTLDALQENIKRFE-DDTESPLAILYGQ-EGNFCSGFDLH 79 (314)
Q Consensus 12 ~~~~~v~~~~~~~v~~itlnrp~----------~~Nal~~~~~~eL~~al~~~~-~d~~vr~vVltg~-g~~F~aG~Dl~ 79 (314)
.-+++|.++++++|++||||||+ |.|++|.+|+.+|.+++++++ +|+++|+|||||. |++||+|+|++
T Consensus 8 ~~~~~v~~~~~g~Va~ItLnrpe~~~~~p~~~~k~Nal~~~~l~eL~~al~~~~~~d~~vRvVVLtg~~Gk~FcaG~DL~ 87 (546)
T TIGR03222 8 SQYRHWKLTFDGPVATLTMDVDEDGGLRPGYKLKLNSYDLGVDIELHDAVQRIRFEHPEVRTVVMTSGKDRVFCSGANIF 87 (546)
T ss_pred CCCceEEEEeeCCEEEEEEecccccccCccccccCCCCCHHHHHHHHHHHHHHHhcCCCeeEEEEecCCCCCCcCCcCHH
Confidence 34667899999999999999976 899999999999999999999 7899999999987 58999999999
Q ss_pred cccCCCCc-h--hHHHH----HHHHh--cCCCCcEEEEEcCccccccccccccCcEEEEeCC--eEeeccccc-cccccc
Q psy9494 80 ELDENPDT-K--LFDDF----REFLQ--KPAKKPIIAAITGYAVGQGLDLALWCDLRFVEEN--VLMGFYNRR-FVYLKD 147 (314)
Q Consensus 80 ~~~~~~~~-~--~~~~~----~~~~~--~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~--a~f~~pe~~-~G~~~~ 147 (314)
++...... . ..... ..+.. .++||||||+|||+|+|||++|+++||+|||+++ ++|++||++ +|
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~pkPvIAAVnG~a~GGG~~LALacD~rvAs~~a~a~f~~pEv~~lG---- 163 (546)
T TIGR03222 88 MLGLSTHAWKVNFCKFTNETRNGIEDSSRHSGLKFLAAVNGTCAGGGYELALACDEIMLVDDRSSSVSLPEVPLLG---- 163 (546)
T ss_pred HHhccccchhhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEEecCCCcEEEccchhccC----
Confidence 87432111 0 10111 11111 2799999999999999999999999999999986 799999997 99
Q ss_pred cccccchhhhhcccccccccccccccccccccCCCCchHHHHHH--HHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeC
Q psy9494 148 SLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLG--QMIGTSRTMDMISLGRHITAREALDWGLCNKMVN 225 (314)
Q Consensus 148 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~g~~~~l~--~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~ 225 (314)
+.|++|+..+++ +.+|..+|++|+++|++++|+||++|||||+++|
T Consensus 164 --------------------------------l~P~~gg~~~l~~~~~vg~~~A~~llltG~~i~A~eA~~~GLV~~vv~ 211 (546)
T TIGR03222 164 --------------------------------VLPGTGGLTRVTDKRRVRRDHADIFCTIEEGVRGKRAKEWRLVDEVVK 211 (546)
T ss_pred --------------------------------cCCccchhhhccccchhCHHHHHHHHHcCCCccHHHHHHcCCceEEeC
Confidence 777888888887 6999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHHHhCCHH
Q psy9494 226 CGTAVGEAMTRAIQMSKLSQS 246 (314)
Q Consensus 226 ~~~l~~~a~~~a~~la~~~~~ 246 (314)
++++.+++.+++++|++.||.
T Consensus 212 ~~~l~~~a~~lA~~la~~~p~ 232 (546)
T TIGR03222 212 PSQFDAAIAERAAELAAQSDR 232 (546)
T ss_pred hHHHHHHHHHHHHHHHhCCCC
Confidence 999999999999999998875
No 89
>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional
Probab=100.00 E-value=2e-37 Score=314.47 Aligned_cols=199 Identities=16% Similarity=0.260 Sum_probs=173.0
Q ss_pred hccccEEEEEeCCEEEEEEcCC-------C---CCCCCCHHHHHHHHHHHHHhh-hCCCccEEEEEcCC-CCccccCCcc
Q psy9494 12 RLVSSVCTKKILNITLISLNRP-------D---KINAINLKTLDALQENIKRFE-DDTESPLAILYGQE-GNFCSGFDLH 79 (314)
Q Consensus 12 ~~~~~v~~~~~~~v~~itlnrp-------~---~~Nal~~~~~~eL~~al~~~~-~d~~vr~vVltg~g-~~F~aG~Dl~ 79 (314)
+.++++.++++++|++|||||| + +.|++|.+|+.+|.+++++++ +|+++|+|||||.+ ++||+|+|++
T Consensus 12 ~~~~~~~~e~~~~Va~ItLnrpe~~~~rP~~~~~~Nal~~~m~~eL~~al~~~~~~d~~vrvVVLtg~ggk~FcaG~DL~ 91 (550)
T PRK08184 12 SQYRHWKLSFDGPVATLTMDVDEDGGLRPGYKLKLNSYDLGVDIELHDALQRIRFEHPEVRTVVVTSAKDRVFCSGANIF 91 (550)
T ss_pred CCCceEEEEeeCCEEEEEEcCccccccCcccccCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCccCHH
Confidence 4577899999999999999965 4 899999999999999999999 78999999999974 8999999999
Q ss_pred cccCCCCch---hH---HHHHHHHh---cCCCCcEEEEEcCccccccccccccCcEEEEeCC--eEeeccccc-cccccc
Q psy9494 80 ELDENPDTK---LF---DDFREFLQ---KPAKKPIIAAITGYAVGQGLDLALWCDLRFVEEN--VLMGFYNRR-FVYLKD 147 (314)
Q Consensus 80 ~~~~~~~~~---~~---~~~~~~~~---~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~--a~f~~pe~~-~G~~~~ 147 (314)
++....... .. ......+. .++||||||+|||+|+|||++|+++|||||++++ ++|++||++ +|
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~pkPvIAAVnG~a~GGG~~LALacD~rIas~~~~a~fg~pEv~~~G---- 167 (550)
T PRK08184 92 MLGGSSHAWKVNFCKFTNETRNGIEDSSRHSGLKFIAAVNGTCAGGGYELALACDEIVLVDDRSSAVSLPEVPLLG---- 167 (550)
T ss_pred hHhccccchhhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEEecCCCcEEEccchhccc----
Confidence 875322110 00 11111111 1799999999999999999999999999999987 899999997 99
Q ss_pred cccccchhhhhcccccccccccccccccccccCCCCchHHHHHH--HHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeC
Q psy9494 148 SLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLG--QMIGTSRTMDMISLGRHITAREALDWGLCNKMVN 225 (314)
Q Consensus 148 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~g~~~~l~--~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~ 225 (314)
+.|++|++++++ +++|..+|++++++|+.++|+||+++||||+++|
T Consensus 168 --------------------------------l~P~~gg~~rl~~~~~vg~~~A~~llltG~~i~AeeA~~~GLVd~vv~ 215 (550)
T PRK08184 168 --------------------------------VLPGTGGLTRVTDKRKVRRDLADIFCTIEEGVRGKRAVDWRLVDEVVK 215 (550)
T ss_pred --------------------------------cCCCcchHHHhhhhhhcCHHHHHHHHHhCCcccHHHHHHcCCccEeeC
Confidence 777888899998 7799999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHHHhCCHH
Q psy9494 226 CGTAVGEAMTRAIQMSKLSQS 246 (314)
Q Consensus 226 ~~~l~~~a~~~a~~la~~~~~ 246 (314)
++++.+++.+++++|+..||.
T Consensus 216 ~d~l~~~a~~~A~~ia~~~~~ 236 (550)
T PRK08184 216 PSKFDAKVAERAAELAAASDR 236 (550)
T ss_pred HHHHHHHHHHHHHHHHhCCCC
Confidence 999999999999999998876
No 90
>KOG1682|consensus
Probab=100.00 E-value=7.7e-36 Score=264.13 Aligned_cols=234 Identities=22% Similarity=0.283 Sum_probs=196.9
Q ss_pred EEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCchhHHHHHHH-
Q psy9494 18 CTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTKLFDDFREF- 96 (314)
Q Consensus 18 ~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~- 96 (314)
.++.+++|-.|+||+|+|.|.++.+|+.+|++++....++.++|+|||+..|+.||+|.||+++-..++.+.....++.
T Consensus 35 ~~~~~~gvR~i~l~npKk~NtLSLaM~~~Lq~~ll~d~d~~dlr~viita~GkifSaGH~LKELt~e~g~d~haevFqtc 114 (287)
T KOG1682|consen 35 LVKEHNGVREITLNNPKKLNTLSLAMMCALQDALLKDKDNLDLRCVIITAQGKIFSAGHNLKELTNEPGSDIHAEVFQTC 114 (287)
T ss_pred ccccccceeeeeecCccccchhhHHHHHHHHHHHhhcccccceeEEEEecCCccccccccHHHhhcCccchHHHHHHHHH
Confidence 4455689999999999999999999999999999999999999999999999999999999999876655433333222
Q ss_pred ---Hhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhccccccccccccc
Q psy9494 97 ---LQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLR 171 (314)
Q Consensus 97 ---~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 171 (314)
... ++|+||||-|||+|..+|+.|...||+++|+++++|..|...+|+
T Consensus 115 ~dvmn~Irn~pVPVia~VNG~AaAAGcQLVaSCD~vVa~k~SkF~tPG~~vGl--------------------------- 167 (287)
T KOG1682|consen 115 TDVMNDIRNLPVPVIAKVNGYAAAAGCQLVASCDMVVATKNSKFSTPGAGVGL--------------------------- 167 (287)
T ss_pred HHHHHHHhcCCCceEEEecchhhhccceEEEeeeEEEEecCccccCCCCceee---------------------------
Confidence 221 999999999999999999999999999999999999999999994
Q ss_pred ccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHHhCCHH-HHHH
Q psy9494 172 DNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQS-MLAD 250 (314)
Q Consensus 172 ~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~~~-~~~~ 250 (314)
+. .....-+.|.+++..+.+|++||.+++++||+..|||+++||.+++..++.+++..|-..+.. +..-
T Consensus 168 --------FC--STPGvAlaRavpRkva~~ML~Tg~Pi~~eeAl~sGlvskvVp~~el~~e~~~i~~~i~~~srav~slg 237 (287)
T KOG1682|consen 168 --------FC--STPGVALARAVPRKVAAYMLMTGLPITGEEALISGLVSKVVPAEELDKEIEEITNAIKAKSRAVISLG 237 (287)
T ss_pred --------Ee--cCcchhHhhhcchhHHHHHHHhCCCCchHHHHHhhhhhhcCCHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 21 112235789999999999999999999999999999999999999999999999999999999 8888
Q ss_pred HHHHHhhhhchHHHHHHHHHH-----------HHhhhHHHHHHhcCCCCCCC
Q psy9494 251 RATVLSECETCREEWMSERKH-----------YIGISFELKFLQKKKKAKNG 291 (314)
Q Consensus 251 K~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~af~ekr~p~~~~ 291 (314)
|...+........+..+.... .+++ .+|++||+|.|+-
T Consensus 238 k~f~y~q~~ms~~ea~~~~~~~m~~n~ql~d~kegi---asf~~krp~~~~h 286 (287)
T KOG1682|consen 238 KEFYYKQLAMSQAEAFSAAQEKMCENFQLGDTKEGI---ASFFEKRPPNWKH 286 (287)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHhhcccccchHHHH---HHHhccCCCCcCC
Confidence 988877766554443333211 1222 5999999999963
No 91
>KOG1684|consensus
Probab=99.96 E-value=9.6e-29 Score=234.29 Aligned_cols=179 Identities=22% Similarity=0.307 Sum_probs=156.2
Q ss_pred ccEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcC-CCCccccCCcccccCCCC---c-hh
Q psy9494 15 SSVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQ-EGNFCSGFDLHELDENPD---T-KL 89 (314)
Q Consensus 15 ~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~---~-~~ 89 (314)
+.|.++..++...||||||+..||+|.+|...+...|...+.++.+++||+.|+ |++||+|+|+........ . ..
T Consensus 38 ~~VL~e~~~~~r~itLNRPKaLNAlnleMv~~~~~~L~~we~s~~~k~vIlkgs~~raFCAGgDI~~~ae~~~d~~~~~~ 117 (401)
T KOG1684|consen 38 DQVLVEGKGCARVITLNRPKALNALNLEMVLSIYPKLVEWEKSPLVKLVILKGSGGRAFCAGGDIKAVAESIKDKETPEV 117 (401)
T ss_pred CceEEecCCceeEEEecCchhhccccHHHHHHHHHHHHhhccCCCceEEEEecCCCceeecCccHHHHHHHhhcCCchHH
Confidence 468899999999999999999999999999999999999999999999999988 599999999986543221 1 11
Q ss_pred HHHHHHHHh---c--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhcccccc
Q psy9494 90 FDDFREFLQ---K--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRT 164 (314)
Q Consensus 90 ~~~~~~~~~---~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~ 164 (314)
...+.+.+. . ++.||.||.++|..+|||++|....-||||+|++.|.+||..+|
T Consensus 118 ~~fF~~eYsl~~~igtY~KP~ValmdGITMGgG~GLS~hg~fRVATerT~~AmPEt~IG--------------------- 176 (401)
T KOG1684|consen 118 KKFFTEEYSLNHLIGTYLKPYVALMDGITMGGGVGLSVHGRFRVATERTVFAMPETGIG--------------------- 176 (401)
T ss_pred HHHHHHHHHHHHHHHHhcCceEEEeeceeecCCcceeecceeEEeeccceecccccccc---------------------
Confidence 122222221 1 99999999999999999999999999999999999999999999
Q ss_pred cccccccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchH
Q psy9494 165 QLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAV 230 (314)
Q Consensus 165 ~~~~~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~ 230 (314)
+.|+.|+++.++|+.| ....++.+||.++++.||+..||.++-|+.+++-
T Consensus 177 ---------------lfPDVG~Sy~lsrlpg-~lg~YLgLTG~rl~GaD~~~~GlATHyv~S~~l~ 226 (401)
T KOG1684|consen 177 ---------------LFPDVGASYFLSRLPG-YLGLYLGLTGQRLSGADALRCGLATHYVPSEKLP 226 (401)
T ss_pred ---------------cccCccceeehhhCcc-HHHHhhhhccceecchHHHHhcchhhccchhhhh
Confidence 6668899999999998 7889999999999999999999999999987653
No 92
>cd07014 S49_SppA Signal peptide peptidase A. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal p
Probab=99.81 E-value=6.6e-20 Score=161.24 Aligned_cols=150 Identities=19% Similarity=0.146 Sum_probs=111.0
Q ss_pred HHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCchhHHHHHHHHhc--CCCCcEEEEEcCcccccccc
Q psy9494 42 KTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTKLFDDFREFLQK--PAKKPIIAAITGYAVGQGLD 119 (314)
Q Consensus 42 ~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~--~~~kPvIAav~G~a~GgG~~ 119 (314)
-.+.+|.++++++++|+++|+|||++ +|.|.|+.... .+.+.+.. .++|||||+|+|.|.|+|+.
T Consensus 22 ~~~~~l~~~l~~a~~d~~v~~vvl~~----~~~gg~~~~~~---------~~~~~i~~~~~~~kpVia~v~G~a~g~g~~ 88 (177)
T cd07014 22 VSGDTTAAQIRDARLDPKVKAIVLRV----NSPGGSVTASE---------VIRAELAAARAAGKPVVASGGGNAASGGYW 88 (177)
T ss_pred cCHHHHHHHHHHHhcCCCceEEEEEe----eCCCcCHHHHH---------HHHHHHHHHHhCCCCEEEEECCchhHHHHH
Confidence 35789999999999999999999997 68888876421 22222222 68999999999999999999
Q ss_pred ccccCcEEEEeCCeEeeccccccccccccccccchhhhhcccccccccccccccccccccCCCCchHHHHHHHHhh--HH
Q psy9494 120 LALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIG--TS 197 (314)
Q Consensus 120 lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~g~~~~l~~~vG--~~ 197 (314)
++++||++++++++.|+.+....+. .+... .+ -.........+++..| +.
T Consensus 89 la~a~D~i~a~~~a~~~~~G~~~~~----------------~~~~~---~l---------~~~~~~~~~~v~~~rg~~~~ 140 (177)
T cd07014 89 ISTPANYIVANPSTLVGSIGIFGVQ----------------LADQL---SI---------ENGYKRFITLVADNRHSTPE 140 (177)
T ss_pred HHHhCCEEEECCCCeEEEechHhhH----------------HHHHH---HH---------HHHHHHHHHHHHHhCCCCHH
Confidence 9999999999999999977655440 00000 00 0000011224455555 77
Q ss_pred HHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHH
Q psy9494 198 RTMDMISLGRHITAREALDWGLCNKMVNCGTAVGE 232 (314)
Q Consensus 198 ~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~ 232 (314)
..++++..|+.++|++|++.||||++.+.+++.+.
T Consensus 141 ~~~~~l~~g~~~~a~~A~~~GLVD~v~~~~e~~~~ 175 (177)
T cd07014 141 QQIDKIAQGGVWTGQDAKANGLVDSLGSFDDAVAK 175 (177)
T ss_pred HhHHHhcCcCeEeHHHHHHcCCcccCCCHHHHHHH
Confidence 78899999999999999999999999987766543
No 93
>cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially c
Probab=99.79 E-value=9.7e-19 Score=155.48 Aligned_cols=164 Identities=16% Similarity=0.172 Sum_probs=114.6
Q ss_pred EEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEE-cCCCCccccCCcccccCCCCchhHHHHHHHHhcCCCCc
Q psy9494 26 TLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILY-GQEGNFCSGFDLHELDENPDTKLFDDFREFLQKPAKKP 104 (314)
Q Consensus 26 ~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVlt-g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~kP 104 (314)
+.|.++ ..++..+...+.+.|+.+++|+ ++.|+|. ..+ |+++.. ...+...+. .+|||
T Consensus 2 ~vv~i~-----g~I~~~~~~~l~~~l~~a~~~~-~~~vvl~InSp-----GG~v~~---------~~~i~~~l~-~~~kP 60 (187)
T cd07020 2 YVLEIN-----GAITPATADYLERAIDQAEEGG-ADALIIELDTP-----GGLLDS---------TREIVQAIL-ASPVP 60 (187)
T ss_pred EEEEEe-----eEEChHHHHHHHHHHHHHHhCC-CCEEEEEEECC-----CCCHHH---------HHHHHHHHH-hCCCC
Confidence 456664 3466778889999999999765 7888877 332 222211 112223333 79999
Q ss_pred EEEEEc---CccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhcccccccccccccccccccccCC
Q psy9494 105 IIAAIT---GYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIP 181 (314)
Q Consensus 105 vIAav~---G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (314)
||++|+ |+|+|||+.++++||+++++++++|+.++...+..+ . . .....+.++..+
T Consensus 61 via~v~~~~G~AasgG~~iala~D~iva~p~a~~g~~~~~~~~~~-~--------~--------~~~~~~~~~~~~---- 119 (187)
T cd07020 61 VVVYVYPSGARAASAGTYILLAAHIAAMAPGTNIGAAHPVAIGGG-G--------G--------SDPVMEKKILND---- 119 (187)
T ss_pred EEEEEecCCCCchhHHHHHHHhCCceeECCCCcEEeccccccCCC-C--------c--------chHHHHHHHHHH----
Confidence 999999 999999999999999999999999999888744100 0 0 000000000000
Q ss_pred CCchHHHHHHHHhhH--HHHHHHHhcCCCCCHHHHHHCCCceeeeCCC-chHHH
Q psy9494 182 TCDVTIRRLGQMIGT--SRTMDMISLGRHITAREALDWGLCNKMVNCG-TAVGE 232 (314)
Q Consensus 182 p~~g~~~~l~~~vG~--~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~-~l~~~ 232 (314)
-.+....+++..|. .++++++++|+.|+|+||+++||||++++++ ++...
T Consensus 120 -~~~~~~~l~~~~G~~~~~a~~~l~~g~~~~a~eA~~~Glvd~v~~~~~~~~~~ 172 (187)
T cd07020 120 -AVAYIRSLAELRGRNAEWAEKAVRESLSLTAEEALKLGVIDLIAADLNELLKK 172 (187)
T ss_pred -HHHHHHHHHHHcCCCHHHHHHHHHcCCeecHHHHHHcCCcccccCCHHHHHHH
Confidence 01245678888997 6899999999999999999999999999885 56544
No 94
>cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te
Probab=99.71 E-value=4.6e-17 Score=147.32 Aligned_cols=186 Identities=18% Similarity=0.165 Sum_probs=121.3
Q ss_pred EEEEEEcCC--CCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCchhHHHHHHHHhcCCC
Q psy9494 25 ITLISLNRP--DKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTKLFDDFREFLQKPAK 102 (314)
Q Consensus 25 v~~itlnrp--~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 102 (314)
|++|.++-| ++.+.-+..++.++.++|+++.+||++++|||+ .||+|+|+..+.. . ......+. .++
T Consensus 2 i~v~~~~g~i~~~~~~~~~~~~~~l~~~l~~a~~d~~v~~ivL~----~~s~Gg~~~~~~~-----~-~~~l~~~~-~~~ 70 (211)
T cd07019 2 IGVVFANGAIVDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLR----VNSPGGSVTASEV-----I-RAELAAAR-AAG 70 (211)
T ss_pred EEEEEEEEEEeCCCCCCCccCHHHHHHHHHHHhhCCCceEEEEE----EcCCCcCHHHHHH-----H-HHHHHHHH-hCC
Confidence 555555433 122333455789999999999999999999998 7999999976531 1 11122233 679
Q ss_pred CcEEEEEcCccccccccccccCcEEEEeCCeEeeccccc--cccccccccccchhhhhccc-cccccccccccccccccc
Q psy9494 103 KPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRR--FVYLKDSLLSSGVVLYALHV-PRTQLKHSLRDNLSRDLA 179 (314)
Q Consensus 103 kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~--~G~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~ 179 (314)
|||||+++|+|.|+|+.|+++||+++|++++.++.--.. .-.+...+.++||-+...|+ +..+... .+.
T Consensus 71 kpVia~v~g~a~s~gy~la~~aD~i~a~~~a~~gsiGv~~~~~~~~~~l~k~Gv~~~~~~~~g~~k~~~--~~~------ 142 (211)
T cd07019 71 KPVVVSAGGAAASGGYWISTPANYIVANPSTLTGSIGIFGVITTVENSLDSIGVHTDGVSTSPLADVSI--TRA------ 142 (211)
T ss_pred CCEEEEECCeehhHHHHHHHhCCEEEEcCCCEEEEeEEEEEcCCHHHHHHhcCCceEEEEecCcccCCC--CCC------
Confidence 999999999999999999999999999999988722111 00124456677877777766 4333211 110
Q ss_pred CCCCchHHHHHHHHhh-----------HH-----HHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHH
Q psy9494 180 IPTCDVTIRRLGQMIG-----------TS-----RTMDMISLGRHITAREALDWGLCNKMVNCGTAVG 231 (314)
Q Consensus 180 ~~p~~g~~~~l~~~vG-----------~~-----~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~ 231 (314)
+. .-....+...+. .. ...+-+..|+.+++++|++.||||++...+++.+
T Consensus 143 ~s--~e~r~~~~~~ld~~~~~f~~~Va~~R~~~~~~l~~~~~~~~~~~~~A~~~GLvD~i~~~~~~~~ 208 (211)
T cd07019 143 LP--PEAQLGLQLSIENGYKRFITLVADARHSTPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVA 208 (211)
T ss_pred CC--HHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHhcCCcEEeHHHHHHcCCcccCCCHHHHHH
Confidence 11 111111112121 11 1233466899999999999999999987665544
No 95
>cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases.
Probab=99.64 E-value=2.1e-15 Score=136.68 Aligned_cols=176 Identities=16% Similarity=0.168 Sum_probs=117.4
Q ss_pred cCCCCCCC-CCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCchhHHHHHHHHhc--CCCCcEEE
Q psy9494 31 NRPDKINA-INLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTKLFDDFREFLQK--PAKKPIIA 107 (314)
Q Consensus 31 nrp~~~Na-l~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~--~~~kPvIA 107 (314)
++|...|+ ++..++.++.++|+++++|+++++|||+. +|.|.++... ..+.+.+.. . +|||||
T Consensus 13 ~~~~~~~~~~~~~~~~~l~~~l~~a~~d~~i~~Vvl~~----~s~gg~~~~~---------~~l~~~l~~~~~-~KpViA 78 (214)
T cd07022 13 PRGSWLEASSGLTSYEGIAAAIRAALADPDVRAIVLDI----DSPGGEVAGV---------FELADAIRAARA-GKPIVA 78 (214)
T ss_pred CCCCcccCCCCcccHHHHHHHHHHHhhCCCCcEEEEEE----eCCCCcHHHH---------HHHHHHHHHHhc-CCCEEE
Confidence 45555565 45689999999999999999999999975 4556554322 223333331 3 799999
Q ss_pred EEcCccccccccccccCcEEEEeCCeEeeccccccc--cccccccccchhhhhcccccccccccccccccccccCCCCch
Q psy9494 108 AITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFV--YLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDV 185 (314)
Q Consensus 108 av~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~g 185 (314)
+++|.|.|+|+.++++||.++|++++.|+..-+... .+...|.++||-+..++....+-..++- -++...
T Consensus 79 ~v~g~a~s~gy~lA~~aD~i~a~~~a~~g~iG~~~~~~~~~~ll~k~Gi~~~~~~~g~~K~~~~~~--------~~~s~~ 150 (214)
T cd07022 79 FVNGLAASAAYWIASAADRIVVTPTAGVGSIGVVASHVDQSKALEKAGLKVTLIFAGAHKVDGNPD--------EPLSDE 150 (214)
T ss_pred EECCchhhHHHHHHhcCCEEEEcCCCeEEeeeEEEecCCHHHHHHhCCCeEEEEEcCCCccCCCCC--------CCCCHH
Confidence 999999999999999999999999998865433222 1345667788877777775443222211 111111
Q ss_pred HHHHHHH-----------HhhH------HHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchH
Q psy9494 186 TIRRLGQ-----------MIGT------SRTMDMISLGRHITAREALDWGLCNKMVNCGTAV 230 (314)
Q Consensus 186 ~~~~l~~-----------~vG~------~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~ 230 (314)
....+.. .|.. ....+++ |+.++|++|++.||||++...+++.
T Consensus 151 ~re~~~~~l~~~~~~f~~~V~~~R~~~~~~~~~~~--~~~~~~~~Al~~gLvD~i~~~~~~~ 210 (214)
T cd07022 151 ARARLQAEVDALYAMFVAAVARNRGLSAAAVRATE--GGVFRGQEAVAAGLADAVGTLDDAL 210 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhh--cCeeeHHHHHHcCCCcccCCHHHHH
Confidence 1111222 2221 2223444 9999999999999999998766544
No 96
>cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad
Probab=99.61 E-value=2.6e-15 Score=135.29 Aligned_cols=183 Identities=19% Similarity=0.218 Sum_probs=122.9
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCchhHHHHHHHHhc--CCC
Q psy9494 25 ITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTKLFDDFREFLQK--PAK 102 (314)
Q Consensus 25 v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~--~~~ 102 (314)
|++|.++-+=... ...++.+|.++|+.++.|+++++|+|++ +|.|+|+... ..+.+.+.. .++
T Consensus 2 v~vi~i~g~i~~~--~~~~~~~l~~~l~~a~~d~~i~~ivl~~----~s~Gg~~~~~---------~~i~~~i~~~~~~~ 66 (208)
T cd07023 2 IAVIDIEGTISDG--GGIGADSLIEQLRKAREDDSVKAVVLRI----NSPGGSVVAS---------EEIYREIRRLRKAK 66 (208)
T ss_pred EEEEEEEEEEcCC--CCCCHHHHHHHHHHHHhCCCCcEEEEEE----ECCCCCHHHH---------HHHHHHHHHHHhcC
Confidence 4566665321101 3689999999999999999999999998 4778887542 112222222 679
Q ss_pred CcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccc--cccccccccchhhhhcccccccccccccccccccccC
Q psy9494 103 KPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFV--YLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAI 180 (314)
Q Consensus 103 kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (314)
|||||+++|.|.|+|+.++++||.+++++++.|+..-.... .+..+|.++||-+..+|....+-...+.+. .
T Consensus 67 kpvia~v~g~~~s~g~~lA~aaD~i~a~~~s~~g~iG~~~~~~~~~~~l~k~Gi~~~~~~~g~~K~~~~~~~~------~ 140 (208)
T cd07023 67 KPVVASMGDVAASGGYYIAAAADKIVANPTTITGSIGVIGQGPNLEELLDKLGIERDTIKSGPGKDKGSPDRP------L 140 (208)
T ss_pred CcEEEEECCcchhHHHHHHhhCCEEEECCCCeEEeCcEEEecCCHHHHHHhcCCceEEEecCCCccCCCCCCC------C
Confidence 99999999999999999999999999999998864322211 134567778888888777544433332211 1
Q ss_pred CCCchHHHHHHHHhhH-----------HH-----HHHHHhcCCCCCHHHHHHCCCceeeeCCCchH
Q psy9494 181 PTCDVTIRRLGQMIGT-----------SR-----TMDMISLGRHITAREALDWGLCNKMVNCGTAV 230 (314)
Q Consensus 181 ~p~~g~~~~l~~~vG~-----------~~-----a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~ 230 (314)
.......+..++.. .| ..+-+..|..+++++|++.||||++...+++.
T Consensus 141 --s~~~~e~~~~~l~~~~~~f~~~Va~~R~~~~~~~~~~~~~~~~~a~~A~~~gLiD~i~~~~~~~ 204 (208)
T cd07023 141 --TEEERAILQALVDDIYDQFVDVVAEGRGMSGERLDKLADGRVWTGRQALELGLVDELGGLDDAI 204 (208)
T ss_pred --CHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHhcCCcEEEHHHHHHcCCCcccCCHHHHH
Confidence 11122222222221 11 12336789999999999999999998755544
No 97
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=99.61 E-value=9.3e-16 Score=157.73 Aligned_cols=202 Identities=21% Similarity=0.234 Sum_probs=129.0
Q ss_pred EeCCEEEEEEcCCC--CCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcC---CCCccccCCcccccCCCCchhHHHHHH
Q psy9494 21 KILNITLISLNRPD--KINAINLKTLDALQENIKRFEDDTESPLAILYGQ---EGNFCSGFDLHELDENPDTKLFDDFRE 95 (314)
Q Consensus 21 ~~~~v~~itlnrp~--~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~---g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 95 (314)
.+++|++|+++.+= ..|..+....+.+.+.|+++.+|++|++|||+-. |..|++ +.+++
T Consensus 306 ~~~~vavI~~~G~I~~~~~~~~~~~~~~~~~~l~~a~~D~~VkaIVLrinSpGGs~~as----------------e~i~~ 369 (584)
T TIGR00705 306 VQDKIGIVHLEGPIADGRDTEGNTGGDTVAALLRVARSDPDIKAVVLRINSPGGSVFAS----------------EIIRR 369 (584)
T ss_pred CCCeEEEEEEEEEEcCCCCcccccCHHHHHHHHHHHhhCCCceEEEEEecCCCCCHHHH----------------HHHHH
Confidence 46789999998763 2344444456788899999999999999999943 334543 11222
Q ss_pred HHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccc---cccccccchhhhhcccccccccccc
Q psy9494 96 FLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYL---KDSLLSSGVVLYALHVPRTQLKHSL 170 (314)
Q Consensus 96 ~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~---~~~~~~~g~~~~~~~~~~~~~~~~~ 170 (314)
.+.. ..+|||||.++|.|++||+.++++||.++|++++.+|---+- +.. ...+..+||......+...+-....
T Consensus 370 ~i~~~~~~gKPVva~~~g~aaSggY~iA~aaD~I~a~p~t~~GSIGv~-~~~~~~~~~l~klGi~~~~~~t~~~~~~s~~ 448 (584)
T TIGR00705 370 ELARAQARGKPVIVSMGAMAASGGYWIASAADYIVASPNTITGSIGVF-SVLPTFENSLDRIGVHVDGVSTHELANVSLL 448 (584)
T ss_pred HHHHHHhCCCcEEEEECCccccHHHHHHHhCCEEEECCCCeeecCEEE-EEccCHHHHHHhcCCceEEEeccCcCCCCCC
Confidence 2221 567999999999999999999999999999999977422111 100 0122345554444433222111000
Q ss_pred cccccccccCC--CCchHHHHHHHHhhHHH-----HHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHHhC
Q psy9494 171 RDNLSRDLAIP--TCDVTIRRLGQMIGTSR-----TMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKL 243 (314)
Q Consensus 171 ~~~~~~~~~~~--p~~g~~~~l~~~vG~~~-----a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~ 243 (314)
+...+.+.... --......|...|+..| +.+.+.+|+.|+|+||+++||||++. .+ ++|.+.|++++..
T Consensus 449 ~~~t~~~~~~~~~~l~~~y~~F~~~Va~~R~l~~e~v~~ia~Grv~tg~eA~~~GLVD~ig---~~-~~Ai~~a~~la~~ 524 (584)
T TIGR00705 449 RPLTAEDQAIMQLSVEAGYRRFLSVVSAGRNLTPTQVDKVAQGRVWTGEDAVSNGLVDALG---GL-DEAVAKAAKLAHC 524 (584)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHhCCCcCHHHHHHcCCcccCC---CH-HHHHHHHHHHcCC
Confidence 00000000000 00112334455677766 77889999999999999999999995 33 6788888888887
No 98
>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type. The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively.
Probab=99.55 E-value=3e-14 Score=128.55 Aligned_cols=183 Identities=19% Similarity=0.206 Sum_probs=117.1
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCchhHHHHHHHHhc-CCCC
Q psy9494 25 ITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTKLFDDFREFLQK-PAKK 103 (314)
Q Consensus 25 v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~-~~~k 103 (314)
|++|+++.+= + ....+|.++|+.+.+|+++++|||++. |.|+++... ..+.+.+.. +.+|
T Consensus 2 v~vi~i~g~i-----~-~s~~~l~~~l~~a~~d~~i~~vvl~~~----s~Gg~~~~~---------~~l~~~i~~~~~~k 62 (207)
T TIGR00706 2 IAILPVSGAI-----A-VSPEDFDKKIKRIKDDKSIKALLLRIN----SPGGTVVAS---------EEIYEKLKKLKAKK 62 (207)
T ss_pred EEEEEEEEEE-----e-cCHHHHHHHHHHHhhCCCccEEEEEec----CCCCCHHHH---------HHHHHHHHHhcCCC
Confidence 5556665321 1 346789999999999999999999974 666666422 223333331 2359
Q ss_pred cEEEEEcCccccccccccccCcEEEEeCCeEeeccccccc--cccccccccchhhhhcccccccccccccccccccccCC
Q psy9494 104 PIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFV--YLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIP 181 (314)
Q Consensus 104 PvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (314)
||||.++|.|.|+|+.++++||.++|++++.++..-+... .+...|.++||-...++....+-..++.+ +
T Consensus 63 pvia~v~g~a~s~g~~la~aaD~i~a~p~a~vg~iGv~~~~~~~~~~l~k~Gv~~~~~~~g~~K~~~~~~~--------~ 134 (207)
T TIGR00706 63 PVVASMGGVAASGGYYIAMAADEIVANPGTITGSIGVILQGANVEKLYEKLGIEFEVIKSGEYKDIGSPTR--------E 134 (207)
T ss_pred CEEEEECCccchHHHHHHhcCCEEEECCCCeEEeeeEEEecCCHHHHHHhCCceEEEEEcCCCcCCCCCCC--------C
Confidence 9999999999999999999999999999998764322211 13455677777666665543332211110 1
Q ss_pred CCchHHHHHHHHhh-----------------HHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHH
Q psy9494 182 TCDVTIRRLGQMIG-----------------TSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMT 235 (314)
Q Consensus 182 p~~g~~~~l~~~vG-----------------~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~ 235 (314)
+.......+...+. .... +-++.|+.+++++|++.||||++...+++.+.+.+
T Consensus 135 ~s~~~~e~~~~~l~~~~~~f~~~va~~R~~~~~~~-~~~~~~~~~~~~~A~~~gLvD~i~~~~~~~~~~~~ 204 (207)
T TIGR00706 135 LTPEERDILQNLVNESYEQFVQVVAKGRNLPVEDV-KKFADGRVFTGRQALKLRLVDKLGTEDDALKWLAE 204 (207)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHH-HHHhcCCcccHHHHHHcCCCcccCCHHHHHHHHHH
Confidence 11111111211111 1112 23578999999999999999999877766555443
No 99
>cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease. Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec
Probab=99.51 E-value=9.7e-14 Score=119.65 Aligned_cols=148 Identities=24% Similarity=0.246 Sum_probs=100.8
Q ss_pred CCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCchhHHHHHHHHhcCCCCcEEEEEcCccccccc
Q psy9494 39 INLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTKLFDDFREFLQKPAKKPIIAAITGYAVGQGL 118 (314)
Q Consensus 39 l~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~kPvIAav~G~a~GgG~ 118 (314)
++..+..++.+.|+.++.|+.+++|+|.. .|.|.|+... ..+.+.+. .++||||+.++|.|.++|+
T Consensus 8 I~~~~~~~l~~~l~~a~~d~~~~~ivl~~----~s~Gg~~~~~---------~~i~~~l~-~~~kpvva~~~g~~~s~g~ 73 (161)
T cd00394 8 IEDVSADQLAAQIRFAEADNSVKAIVLEV----NTPGGRVDAG---------MNIVDALQ-ASRKPVIAYVGGQAASAGY 73 (161)
T ss_pred EccchHHHHHHHHHHHHhCCCCceEEEEE----ECCCcCHHHH---------HHHHHHHH-HhCCCEEEEECChhHHHHH
Confidence 45688999999999999999999999986 3556655321 22333343 6779999999999999999
Q ss_pred cccccCcEEEEeCCeEeeccccccccccccccccchhhhhcccccccccccccccccccccCCCCchHHHHHHHHh----
Q psy9494 119 DLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMI---- 194 (314)
Q Consensus 119 ~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~g~~~~l~~~v---- 194 (314)
.|+++||.|++.+++.|++.....+. .|..- |... +..... -......+...+
T Consensus 74 ~la~~~d~~~~~~~a~~~~~g~~~~~-------~~~~~-----~~~~---------~~~~~~--l~~~~~~~~~~v~~~r 130 (161)
T cd00394 74 YIATAANKIVMAPGTRVGSHGPIGGY-------GGNGN-----PTAQ---------EADQRI--ILYFIARFISLVAENR 130 (161)
T ss_pred HHHhCCCEEEECCCCEEEEeeeEEec-------CCCCC-----hHHH---------HHHHHH--HHHHHHHHHHHHHHhc
Confidence 99999999999999999977666541 00000 0000 000000 000112222222
Q ss_pred --hHHHHHHHHhcCCCCCHHHHHHCCCceee
Q psy9494 195 --GTSRTMDMISLGRHITAREALDWGLCNKM 223 (314)
Q Consensus 195 --G~~~a~~lll~G~~~sA~eA~~~GLV~~v 223 (314)
......+.+..|..++|+||+++||||++
T Consensus 131 ~~~~~~~~~~~~~~~~~~a~eA~~~GLvD~i 161 (161)
T cd00394 131 GQTTEKLEEDIEKDLVLTAQEALEYGLVDAL 161 (161)
T ss_pred CCCHHHHHHHhcCCcEEcHHHHHHcCCcCcC
Confidence 23346778888999999999999999975
No 100
>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys
Probab=99.46 E-value=2.2e-13 Score=124.26 Aligned_cols=177 Identities=17% Similarity=0.092 Sum_probs=117.9
Q ss_pred CCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCchhHHHHHHHHhcCCCCcEEEEEcCcccccc
Q psy9494 38 AINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTKLFDDFREFLQKPAKKPIIAAITGYAVGQG 117 (314)
Q Consensus 38 al~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~kPvIAav~G~a~GgG 117 (314)
.-+..++.++.++|+++.+|++|++|||+..+..| ++.++.++. +.+ ..+. ..+|||||.++| |.+||
T Consensus 25 ~~~~~~~~~l~~~l~~a~~d~~ik~vvL~~~s~gg-~~~~~~el~--------~~i-~~~~-~~~kpVia~~~~-~~sgg 92 (222)
T cd07018 25 ESSELSLRDLLEALEKAAEDDRIKGIVLDLDGLSG-GLAKLEELR--------QAL-ERFR-ASGKPVIAYADG-YSQGQ 92 (222)
T ss_pred CcCCccHHHHHHHHHHHhcCCCeEEEEEECCCCCC-CHHHHHHHH--------HHH-HHHH-HhCCeEEEEeCC-CCchh
Confidence 33567899999999999999999999999987777 666665542 111 1222 478999999998 88999
Q ss_pred ccccccCcEEEEeCCeEeeccccccc--cccccccccchhhhhcccccccccccccccccccccCCCCchHHH-------
Q psy9494 118 LDLALWCDLRFVEENVLMGFYNRRFV--YLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIR------- 188 (314)
Q Consensus 118 ~~lalacD~~ia~~~a~f~~pe~~~G--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~g~~~------- 188 (314)
+.++++||.++|++++.|+..-+... .+...|.++||-...++....+-..++ +... ++......
T Consensus 93 y~lasaad~I~a~p~~~vg~iGv~~~~~~~~~ll~klGv~~~~~~~G~~K~~~~~--~~~~----~~s~~~r~~~~~~l~ 166 (222)
T cd07018 93 YYLASAADEIYLNPSGSVELTGLSAETLFFKGLLDKLGVEVQVFRVGEYKSAVEP--FTRD----DMSPEAREQTQALLD 166 (222)
T ss_pred hhhhhhCCEEEECCCceEEeeccchhhhhHHHHHHHcCCcEEEEEEeccccccch--hhcc----cCCHHHHHHHHHHHH
Confidence 99999999999999998886433322 134456777877776666443322111 1000 00111111
Q ss_pred ----HHHHHhhHHH-----HHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHH
Q psy9494 189 ----RLGQMIGTSR-----TMDMISLGRHITAREALDWGLCNKMVNCGTAVGE 232 (314)
Q Consensus 189 ----~l~~~vG~~~-----a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~ 232 (314)
.+...|-..| ..+-+..|+.++|++|++.||||++...+++.+.
T Consensus 167 ~~~~~f~~~Va~~R~~~~~~~~~~~~~~~~~~~~A~~~GLvD~i~~~~e~~~~ 219 (222)
T cd07018 167 SLWDQYLADVAASRGLSPDALEALIDLGGDSAEEALEAGLVDGLAYRDELEAR 219 (222)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHcCCcHHHHHHHCCCCCcCCcHHHHHHH
Confidence 1222222211 1233556999999999999999999977766554
No 101
>cd07016 S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. This subfamily only contains bacterial sequences. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which a
Probab=99.44 E-value=1.6e-13 Score=118.64 Aligned_cols=129 Identities=16% Similarity=0.221 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCchhHHHHHHHHhcCCCCcEEEEEcCcccccccccc
Q psy9494 42 KTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTKLFDDFREFLQKPAKKPIIAAITGYAVGQGLDLA 121 (314)
Q Consensus 42 ~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~kPvIAav~G~a~GgG~~la 121 (314)
.+.+.+.+.|+.++.++.+ .+.|-+.|+...+|. .+.+.+. .++||||+.++|.|.|+|+.++
T Consensus 15 ~~~~~~~~~l~~~~~~~~i-~l~inspGG~~~~~~---------------~i~~~i~-~~~~pvi~~v~g~a~s~g~~ia 77 (160)
T cd07016 15 VTAKEFKDALDALGDDSDI-TVRINSPGGDVFAGL---------------AIYNALK-RHKGKVTVKIDGLAASAASVIA 77 (160)
T ss_pred cCHHHHHHHHHhccCCCCE-EEEEECCCCCHHHHH---------------HHHHHHH-hcCCCEEEEEcchHHhHHHHHH
Confidence 5677888889999887433 455556665443332 2223333 6899999999999999999999
Q ss_pred ccCcEEEEeCCeEeeccccccccccccccccchhhhhcccccccccccccccccccccCCCCch---------------H
Q psy9494 122 LWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDV---------------T 186 (314)
Q Consensus 122 lacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~g---------------~ 186 (314)
++||.|++++++.|++.....+ .++... .
T Consensus 78 ~a~d~~~~~~~a~~~~~~~~~~------------------------------------~~g~~~~~~~~~~~l~~~~~~~ 121 (160)
T cd07016 78 MAGDEVEMPPNAMLMIHNPSTG------------------------------------AAGNADDLRKAADLLDKIDESI 121 (160)
T ss_pred hcCCeEEECCCcEEEEECCccc------------------------------------cCcCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998666554 221111 2
Q ss_pred HHHHHHHhh--HHHHHHHHhcCCCCCHHHHHHCCCceee
Q psy9494 187 IRRLGQMIG--TSRTMDMISLGRHITAREALDWGLCNKM 223 (314)
Q Consensus 187 ~~~l~~~vG--~~~a~~lll~G~~~sA~eA~~~GLV~~v 223 (314)
...+.+..| .....+++..+..++|+||+++||||++
T Consensus 122 ~~~~~~~~g~~~~~i~~~~~~~~~l~a~eA~~~GliD~v 160 (160)
T cd07016 122 ANAYAEKTGLSEEEISALMDAETWLTAQEAVELGFADEI 160 (160)
T ss_pred HHHHHHHhCCCHHHHHHHHhCCeECcHHHHHHcCCCCcC
Confidence 334677778 5677777777888999999999999975
No 102
>PRK10949 protease 4; Provisional
Probab=99.19 E-value=2e-10 Score=118.90 Aligned_cols=188 Identities=21% Similarity=0.202 Sum_probs=114.2
Q ss_pred eCCEEEEEEcCC-----CCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcC--CCCccccCCcccccCCCCchhHHHHH
Q psy9494 22 ILNITLISLNRP-----DKINAINLKTLDALQENIKRFEDDTESPLAILYGQ--EGNFCSGFDLHELDENPDTKLFDDFR 94 (314)
Q Consensus 22 ~~~v~~itlnrp-----~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~--g~~F~aG~Dl~~~~~~~~~~~~~~~~ 94 (314)
.+.|++|.++-. ...+.++. +.+.+.|+++.+|++|++|||+-. |+...+ .+.++
T Consensus 325 ~~~Iavi~~~G~I~~g~~~~g~~~~---~~~~~~l~~a~~D~~vkaVvLrInSpGGs~~a---------------se~i~ 386 (618)
T PRK10949 325 GGSIAVIFANGAIMDGEETPGNVGG---DTTAAQIRDARLDPKVKAIVLRVNSPGGSVTA---------------SEVIR 386 (618)
T ss_pred CCeEEEEEEEEEEcCCCCcCCCcCH---HHHHHHHHHHHhCCCCcEEEEEecCCCCcHHH---------------HHHHH
Confidence 567999988632 22233443 567888999999999999999943 321111 12333
Q ss_pred HHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeecccccccc---ccccccccchhhhhccccccccccc
Q psy9494 95 EFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVY---LKDSLLSSGVVLYALHVPRTQLKHS 169 (314)
Q Consensus 95 ~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~---~~~~~~~~g~~~~~~~~~~~~~~~~ 169 (314)
+.+.+ ...|||||.+.|.|..||+.++++||.++|.+.+..|---+ +|. +...|.++||-.....+....-. +
T Consensus 387 ~~i~~~r~~gKPVvas~~~~aASggY~iA~aad~I~a~p~t~tGSIGV-~~~~~~~~~ll~klGV~~~~~~~~~~~~~-~ 464 (618)
T PRK10949 387 AELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVASPSTLTGSIGI-FGVINTVENSLDSIGVHTDGVSTSPLADV-S 464 (618)
T ss_pred HHHHHHHhcCCcEEEEECCCCccHHHHHHHhcCEEEECCCCceeeCcE-EEEccCHHHHHHhcCCceeEEeccccCCc-c
Confidence 33332 56799999999999999999999999999999875542111 111 12245566665554443111100 1
Q ss_pred ccccccccccCCCCchHH-----------HHHHHHhhHHH-----HHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHH
Q psy9494 170 LRDNLSRDLAIPTCDVTI-----------RRLGQMIGTSR-----TMDMISLGRHITAREALDWGLCNKMVNCGTAVGEA 233 (314)
Q Consensus 170 ~~~~~~~~~~~~p~~g~~-----------~~l~~~vG~~~-----a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a 233 (314)
.. -+...... ..|...|-..| ..+-+..|+.|++++|++.||||++...+++.+.|
T Consensus 465 ~~--------~~~s~e~~~~~q~~ld~~y~~F~~~Va~~R~~~~~~v~~ia~Grv~tg~~A~~~GLVD~lG~~~~ai~~a 536 (618)
T PRK10949 465 IT--------KALPPEFQQMMQLSIENGYKRFITLVADSRHKTPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKA 536 (618)
T ss_pred cc--------CCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHhcCCcccHHHHHHcCCCccCCCHHHHHHHH
Confidence 11 01111111 12222222222 12346899999999999999999998766655555
Q ss_pred HHHH
Q psy9494 234 MTRA 237 (314)
Q Consensus 234 ~~~a 237 (314)
.+++
T Consensus 537 ~~~a 540 (618)
T PRK10949 537 AELA 540 (618)
T ss_pred HHHc
Confidence 5543
No 103
>cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall
Probab=99.16 E-value=4.6e-10 Score=99.43 Aligned_cols=86 Identities=16% Similarity=0.207 Sum_probs=66.5
Q ss_pred CCCHHHHHHHHHHHHHhhhCCCccEEEEE--cCCCCccccCCcccccCCCCchhHHHHHHHHhcCCCCcEEEEEcCcccc
Q psy9494 38 AINLKTLDALQENIKRFEDDTESPLAILY--GQEGNFCSGFDLHELDENPDTKLFDDFREFLQKPAKKPIIAAITGYAVG 115 (314)
Q Consensus 38 al~~~~~~eL~~al~~~~~d~~vr~vVlt--g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~kPvIAav~G~a~G 115 (314)
.+++.+.+.+.++|+++++++ ++.|++. +.|+...++ ..+.+.+. .+++|||+.|+|.|.|
T Consensus 9 ~I~~~~~~~l~~~l~~a~~~~-~~~ivl~inspGG~v~~~---------------~~I~~~l~-~~~~pvva~V~g~AaS 71 (178)
T cd07021 9 EIDPGLAAFVERALKEAKEEG-ADAVVLDIDTPGGRVDSA---------------LEIVDLIL-NSPIPTIAYVNDRAAS 71 (178)
T ss_pred EECHHHHHHHHHHHHHHHhCC-CCeEEEEEECcCCCHHHH---------------HHHHHHHH-hCCCCEEEEECCchHH
Confidence 566788889999999999986 7777776 333322221 22333333 7899999999999999
Q ss_pred ccccccccCcEEEEeCCeEeecccc
Q psy9494 116 QGLDLALWCDLRFVEENVLMGFYNR 140 (314)
Q Consensus 116 gG~~lalacD~~ia~~~a~f~~pe~ 140 (314)
+|+.++++||++++++++.||.+..
T Consensus 72 aG~~ia~a~d~i~m~p~a~iG~~~~ 96 (178)
T cd07021 72 AGALIALAADEIYMAPGATIGAAEP 96 (178)
T ss_pred HHHHHHHhCCeEEECCCCeEecCee
Confidence 9999999999999999999986644
No 104
>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=99.03 E-value=1.9e-09 Score=103.55 Aligned_cols=171 Identities=20% Similarity=0.248 Sum_probs=101.1
Q ss_pred HHHHHHHHHHHhhhCCCccEEEEE--cCCCCccccCCcccccCCCCchhHHHHHHHHhc-CCCCcEEEEEcCcccccccc
Q psy9494 43 TLDALQENIKRFEDDTESPLAILY--GQEGNFCSGFDLHELDENPDTKLFDDFREFLQK-PAKKPIIAAITGYAVGQGLD 119 (314)
Q Consensus 43 ~~~eL~~al~~~~~d~~vr~vVlt--g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~-~~~kPvIAav~G~a~GgG~~ 119 (314)
..+.+.+.|+.+..|+++++|+|. +.|+.-.+ ...+.+.+.+ .-.|||++.|+++|+.||+.
T Consensus 81 ~~~~~~~~l~~~~~~~~vk~vvL~inSPGG~v~a---------------s~~i~~~l~~l~~~~PV~v~v~~~AASGGY~ 145 (317)
T COG0616 81 GGDDIEEILRAARADPSVKAVVLRINSPGGSVVA---------------SELIARALKRLRAKKPVVVSVGGYAASGGYY 145 (317)
T ss_pred cHHHHHHHHHHHhcCCCCceEEEEEECcCCchhH---------------HHHHHHHHHHHhhcCCEEEEECCeecchhhh
Confidence 356666779999999999999998 33433222 1223333333 33349999999999999999
Q ss_pred ccccCcEEEEeCCeEeecccccccc--ccccccccchhhhhcccccccccccccccccccccCCCCchH-----------
Q psy9494 120 LALWCDLRFVEENVLMGFYNRRFVY--LKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVT----------- 186 (314)
Q Consensus 120 lalacD~~ia~~~a~f~~pe~~~G~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~g~----------- 186 (314)
+|++||.++|++++..|---+..+. +...+.++||-.........+-..+. - .+.....
T Consensus 146 IA~aAd~I~a~p~si~GSIGVi~~~~~~~~l~~k~Gv~~~~~~ag~~k~~~~~------~--~~~t~e~~~~~q~~~~e~ 217 (317)
T COG0616 146 IALAADKIVADPSSITGSIGVISGAPNFEELLEKLGVEKEVITAGEYKDILSP------F--RPLTEEEREILQKEIDET 217 (317)
T ss_pred hhccCCEEEecCCceeeeceeEEecCCHHHHHHhcCCceeeeeccccccccCc------c--cCCCHHHHHHHHHHHHHH
Confidence 9999999999999876521111110 11223344433333322221111110 0 1111111
Q ss_pred HHHHHHHhhHHH-----HHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHH
Q psy9494 187 IRRLGQMIGTSR-----TMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTR 236 (314)
Q Consensus 187 ~~~l~~~vG~~~-----a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~ 236 (314)
...|...|...| ...-+.+|+.|++++|++.||||++...++....+.+.
T Consensus 218 y~~F~~~V~~~R~~~~~~~~~~a~g~v~~g~~A~~~gLVDelg~~~~av~~~~~~ 272 (317)
T COG0616 218 YDEFVDKVAEGRGLSDEAVDKLATGRVWTGQQALELGLVDELGGLDDAVKDAAEL 272 (317)
T ss_pred HHHHHHHHHhcCCCChhHHHHHhccceecHHHhhhcCCchhcCCHHHHHHHHHHh
Confidence 222333333222 23578899999999999999999998765544444443
No 105
>cd07015 Clp_protease_NfeD Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially cle
Probab=98.77 E-value=1.2e-07 Score=83.58 Aligned_cols=154 Identities=19% Similarity=0.222 Sum_probs=98.9
Q ss_pred CCCHHHHHHHHHHHHHhhhCCCccEEEEE--cCCCCccccCCcccccCCCCchhHHHHHHHHhcCCCCcEEEEEc---Cc
Q psy9494 38 AINLKTLDALQENIKRFEDDTESPLAILY--GQEGNFCSGFDLHELDENPDTKLFDDFREFLQKPAKKPIIAAIT---GY 112 (314)
Q Consensus 38 al~~~~~~eL~~al~~~~~d~~vr~vVlt--g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~kPvIAav~---G~ 112 (314)
.+++.+...|.++++++++| +++.|+|. +.|+...++ ..+.+.+. ..++||++.|+ |.
T Consensus 9 ~I~~~~~~~l~~~l~~A~~~-~~~~i~l~inSPGG~v~~~---------------~~I~~~i~-~~~~pvv~~v~p~g~~ 71 (172)
T cd07015 9 QITSYTYDQFDRYITIAEQD-NAEAIIIELDTPGGRADAA---------------GNIVQRIQ-QSKIPVIIYVYPPGAS 71 (172)
T ss_pred EECHhHHHHHHHHHHHHhcC-CCCeEEEEEECCCCCHHHH---------------HHHHHHHH-hcCcCEEEEEecCCCe
Confidence 46677888899999999876 57777776 334333222 22333333 57999999999 99
Q ss_pred cccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhcccccccccccccccccccccCCCCchHHHHHHH
Q psy9494 113 AVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQ 192 (314)
Q Consensus 113 a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~g~~~~l~~ 192 (314)
|.++|+.++++||.+++.+++.++....-.|. | .........+++..+.. .-..-+.+
T Consensus 72 AaSag~~I~~a~~~i~m~p~s~iG~~~pi~~~--------g---------~~~~~~~~~~ki~~~~~-----~~~r~~A~ 129 (172)
T cd07015 72 AASAGTYIALGSHLIAMAPGTSIGACRPILGY--------S---------QNGSIIEAPPKITNYFI-----AYIKSLAQ 129 (172)
T ss_pred ehhHHHHHHHhcCceEECCCCEEEEccccccC--------C---------CCCccccchHHHHHHHH-----HHHHHHHH
Confidence 99999999999999999999998754442210 0 00000000111111110 01111333
Q ss_pred Hhh--HHHHHHHHhcCCCCCHHHHHHCCCceeeeCC-CchH
Q psy9494 193 MIG--TSRTMDMISLGRHITAREALDWGLCNKMVNC-GTAV 230 (314)
Q Consensus 193 ~vG--~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~-~~l~ 230 (314)
.-| ...+..++.....+||+||+++|++|.+... ++++
T Consensus 130 ~~Gr~~~~a~~~v~~~~~lta~EA~~~G~iD~ia~~~~~ll 170 (172)
T cd07015 130 ESGRNATIAEEFITKDLSLTPEEALKYGVIEVVARDINELL 170 (172)
T ss_pred HHCcCHHHHHHHHHhhcCcCHHHHHHcCCceeeeCCHHHHh
Confidence 334 2457788888899999999999999999986 4443
No 106
>PRK11778 putative inner membrane peptidase; Provisional
Probab=98.73 E-value=1.4e-07 Score=91.08 Aligned_cols=189 Identities=13% Similarity=0.126 Sum_probs=108.5
Q ss_pred eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEc--CCCCccccCCcccccCCCCchhHHHHHHHHhc
Q psy9494 22 ILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYG--QEGNFCSGFDLHELDENPDTKLFDDFREFLQK 99 (314)
Q Consensus 22 ~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg--~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~ 99 (314)
.+.|++|.++.+=..+. ...+.+++.+.++.+..+ ..|||+- .|+.- .|.++ ....+. .+.
T Consensus 89 ~~~v~VI~~~G~I~~~~-~~~l~e~i~a~l~~A~~~---~aVvLridSpGG~v-~~s~~----------a~~~l~-~lr- 151 (330)
T PRK11778 89 KPRLFVLDFKGDIDASE-VESLREEITAILAVAKPG---DEVLLRLESPGGVV-HGYGL----------AASQLQ-RLR- 151 (330)
T ss_pred CCeEEEEEEEEEECCCc-chhhHHHHHHHHHhccCC---CeEEEEEeCCCCch-hHHHH----------HHHHHH-HHH-
Confidence 46799999875432111 223456666666666543 4677773 33221 11111 011111 122
Q ss_pred CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccc--cccccccccchhhhhccccccccccccccccccc
Q psy9494 100 PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFV--YLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRD 177 (314)
Q Consensus 100 ~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 177 (314)
...||+++++++.|..||+.+|++||-++|.+.+.+|.-.+-.. .+...|.++||-...+.....+-..++-
T Consensus 152 ~~~kpVva~v~~~AASggY~iAsaAD~I~A~P~a~vGSIGVi~~~~~~~~lLeKlGI~~evi~aG~yK~a~~pf------ 225 (330)
T PRK11778 152 DAGIPLTVAVDKVAASGGYMMACVADKIIAAPFAIVGSIGVVAQIPNFHRLLKKHDIDVELHTAGEYKRTLTLF------ 225 (330)
T ss_pred hcCCCEEEEECCchhhHHHHHHHhCCEEEECCCCeEEeeeeeeeccCHHHHHHHCCCceEEEEecCccCCCCCC------
Confidence 56899999999999999999999999999999987653322211 0223455566655555443332211110
Q ss_pred ccCCCCchHH-----------HHHHHHhhHHH---HHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHH
Q psy9494 178 LAIPTCDVTI-----------RRLGQMIGTSR---TMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMT 235 (314)
Q Consensus 178 ~~~~p~~g~~-----------~~l~~~vG~~~---a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~ 235 (314)
.+...... ..+...|-..| ..+-+.+|+.|+|++|++.||||++...+++...+.+
T Consensus 226 --~~~see~Re~~q~~Ld~~y~~F~~~Va~~R~~l~~~~va~G~v~~g~~Al~~GLVD~Ig~~dd~i~~~~~ 295 (330)
T PRK11778 226 --GENTEEGREKFREELEETHQLFKDFVQRYRPQLDIDKVATGEHWYGQQALELGLVDEIQTSDDYLLELMK 295 (330)
T ss_pred --CCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHhCCCcCHHHHHHCCCCCcCCCHHHHHHHHHh
Confidence 11111111 12222222222 2345789999999999999999999987776654444
No 107
>cd07013 S14_ClpP Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. Additionally, they are implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of proteas
Probab=98.65 E-value=7.5e-08 Score=83.93 Aligned_cols=85 Identities=16% Similarity=0.219 Sum_probs=63.8
Q ss_pred CCCHHHHHHHHHHHHHhhhCCCccEEEEE--cCCCCccccCCcccccCCCCchhHHHHHHHHhcCCCCcEEEEEcCcccc
Q psy9494 38 AINLKTLDALQENIKRFEDDTESPLAILY--GQEGNFCSGFDLHELDENPDTKLFDDFREFLQKPAKKPIIAAITGYAVG 115 (314)
Q Consensus 38 al~~~~~~eL~~al~~~~~d~~vr~vVlt--g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~kPvIAav~G~a~G 115 (314)
.++..+.+++.+.|..++.++.++.|+|. +.|+...+| ..+.+.++ ..++||++.+.|.|++
T Consensus 8 ~I~~~~~~~~~~~L~~l~~~~~~~~i~l~InSpGG~v~~~---------------~~i~~~i~-~~~~~v~~~~~g~aaS 71 (162)
T cd07013 8 EVEDISANQFAAQLLFLGAVNPEKDIYLYINSPGGDVFAG---------------MAIYDTIK-FIKADVVTIIDGLAAS 71 (162)
T ss_pred EECcHHHHHHHHHHHHHhcCCCCCCEEEEEECCCCcHHHH---------------HHHHHHHH-hcCCCceEEEEeehhh
Confidence 34678899999999999998877777776 444332221 22333444 6788999999999999
Q ss_pred ccccccccCc--EEEEeCCeEeecc
Q psy9494 116 QGLDLALWCD--LRFVEENVLMGFY 138 (314)
Q Consensus 116 gG~~lalacD--~~ia~~~a~f~~p 138 (314)
+|..++++|| .|++.+++++.+.
T Consensus 72 ~~~~i~~a~~~g~r~~~p~a~~~ih 96 (162)
T cd07013 72 MGSVIAMAGAKGKRFILPNAMMMIH 96 (162)
T ss_pred HHHHHHHcCCCCcEEEecCEEEEEc
Confidence 9999999999 6888888877643
No 108
>PF01343 Peptidase_S49: Peptidase family S49 peptidase classification.; InterPro: IPR002142 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S49 (protease IV family, clan S-). The predicted active site serine for members of this family occurs in a transmembrane domain. The domain defines sequences in viruses, archaea, bacteria and plants. These sequences are variously annotated in the different taxonomic groups, examples are: Viruses: capsid protein Archaea: proteinase IV homolog Bacteria: proteinase IV, sohB, SppA, pfaP, putative protease Plants: SppA, protease IV This group also contains proteins classified as non-peptidase homologues that either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of peptidases. Related proteins, non-peptidase homologs and unclassified S49 members are also to be found in IPR002810 from INTERPRO.; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3RST_B 3BEZ_D 3BF0_A.
Probab=98.49 E-value=1.1e-07 Score=82.02 Aligned_cols=129 Identities=22% Similarity=0.262 Sum_probs=81.4
Q ss_pred CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccc--cccccccccchhhhhccccccccccccccccccc
Q psy9494 100 PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFV--YLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRD 177 (314)
Q Consensus 100 ~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 177 (314)
...|||||.++|.+.++|+.++.+||-+++.+.+.++..-+... .+..+|.++||-.-.++....+-..+.++.++
T Consensus 4 ~~~KpV~a~~~~~~~S~~Y~lAs~ad~I~~~p~s~vgsiGv~~~~~~~~~~l~k~GV~~~~~~~g~~K~~~~~~~~~s-- 81 (154)
T PF01343_consen 4 ASGKPVVAYAEGYAASGAYYLASAADEIYANPSSSVGSIGVSAERLFFKGLLEKLGVKVEVVRSGEYKSAGFPRDPMS-- 81 (154)
T ss_dssp HTT--EEEEEEEEEETHHHHHHTTSSEEEE-TT-EEE---EEEEEEE-HHHHHHTT-EEEEEESSTTCCCCCTTSS----
T ss_pred ccCCeEEEEECCcchhHHHHHHHcCCEEEecCCCEEEEeChhhccccHHHHHHHCCCeEEEEecCccccccCcCCCCC--
Confidence 47899999999999999999999999999999987664333211 13567788888777777755554433332211
Q ss_pred ccCCCCchHHHHHHH-----------HhhHHH-----HHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHH
Q psy9494 178 LAIPTCDVTIRRLGQ-----------MIGTSR-----TMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTR 236 (314)
Q Consensus 178 ~~~~p~~g~~~~l~~-----------~vG~~~-----a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~ 236 (314)
......+.+ .|-..| ..+-+..|..++|++|++.||||++...+++...+.+.
T Consensus 82 ------~~~r~~~~~~l~~~~~~f~~~Va~~R~~~~~~v~~~~~~~~~~~~~A~~~GLiD~i~~~~~~~~~l~~~ 150 (154)
T PF01343_consen 82 ------EEERENLQELLDELYDQFVNDVAEGRGLSPDDVEEIADGGVFTAQQALELGLIDEIGTFDEAIARLAKL 150 (154)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHCHHCCHEEEHHHHHHTTSSSEETSHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHhhccccHHHHHHcCchhhcCCHHHHHHHHHHH
Confidence 112222222 222222 12336899999999999999999998777666655543
No 109
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=98.38 E-value=3e-06 Score=87.75 Aligned_cols=175 Identities=18% Similarity=0.101 Sum_probs=107.9
Q ss_pred HHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCchhHHHHHHHHhc--CCCCcEEEEEcCccccccccc
Q psy9494 43 TLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTKLFDDFREFLQK--PAKKPIIAAITGYAVGQGLDL 120 (314)
Q Consensus 43 ~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~--~~~kPvIAav~G~a~GgG~~l 120 (314)
.+.++.++|+.+.+|+.|++|||.-.+ +.|.++.. .+.+.+.+.+ ...|||||..++++ .+|+.+
T Consensus 77 ~l~~i~~~i~~A~~D~~IkgIvL~i~~---~~g~~~~~---------~~ei~~ai~~fk~sgKpVvA~~~~~~-s~~Yyl 143 (584)
T TIGR00705 77 SLFDIVNAIRQAADDRRIEGLVFDLSN---FSGWDSPH---------LVEIGSALSEFKDSGKPVYAYGTNYS-QGQYYL 143 (584)
T ss_pred CHHHHHHHHHHHhcCCCceEEEEEccC---CCCCCHHH---------HHHHHHHHHHHHhcCCeEEEEEcccc-chhhhh
Confidence 578999999999999999999999642 11222211 1223333222 57899999888775 788999
Q ss_pred cccCcEEEEeCCeEeeccccccc--cccccccccchhhhhcccccccccccccccccccccCCCCchHHHH---------
Q psy9494 121 ALWCDLRFVEENVLMGFYNRRFV--YLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRR--------- 189 (314)
Q Consensus 121 alacD~~ia~~~a~f~~pe~~~G--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~g~~~~--------- 189 (314)
|.+||-+++.+...+++.-.... +++..|.++||-.-.++....+-...+ ++..++ ..-....
T Consensus 144 As~AD~I~~~p~G~v~~~G~~~~~~~~k~~ldKlGV~~~v~r~G~yKsa~ep--f~r~~m----S~e~re~~~~~l~~l~ 217 (584)
T TIGR00705 144 ASFADEIILNPMGSVDLHGFYTETLFYKGMLDKLGVRWHXFRVGTYKGAVEP--FSRKDM----SPEARRNYQRWLGELW 217 (584)
T ss_pred hhhCCEEEECCCceEEeeceecccccHHHHHHHcCCeEEEeeccccccccCc--ccCCCC----CHHHHHHHHHHHHHHH
Confidence 99999999999887754322211 256778888988888877655543322 110110 1111111
Q ss_pred --HHHHhhHHHH-----HHHHhcCC--------CCCHHHHHHCCCceeeeCCCchHHHHHHH
Q psy9494 190 --LGQMIGTSRT-----MDMISLGR--------HITAREALDWGLCNKMVNCGTAVGEAMTR 236 (314)
Q Consensus 190 --l~~~vG~~~a-----~~lll~G~--------~~sA~eA~~~GLV~~vv~~~~l~~~a~~~ 236 (314)
+...|...|. .+-...|+ ..+|++|++.||||++...+++.+...+.
T Consensus 218 ~~f~~~Va~~R~l~~~~~~~~a~~~~~~~~~~~g~~a~~A~~~gLVD~l~~~de~~~~l~~~ 279 (584)
T TIGR00705 218 QNYLSSVSRNRAIPVQQLAPYAQGLLELLQKLNGDGARYALAEKLVTAVCSYAEAGKALKFL 279 (584)
T ss_pred HHHHHHHHHHCCCCHHHHHHHHhHHHHHHHhhCCchHHHHHHCCCcccCCCHHHHHHHHHHH
Confidence 2222222210 11112222 23899999999999999877766655443
No 110
>KOG1683|consensus
Probab=98.36 E-value=2.5e-07 Score=89.52 Aligned_cols=173 Identities=14% Similarity=0.096 Sum_probs=125.7
Q ss_pred CEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCC-CCccccCCcccccCCCCch---hHHHHHHHHhc
Q psy9494 24 NITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQE-GNFCSGFDLHELDENPDTK---LFDDFREFLQK 99 (314)
Q Consensus 24 ~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~---~~~~~~~~~~~ 99 (314)
++..+.|+ |+. |..|.++..+|...++.++.+..+++.++|+.. +-|++|.|..+........ ..-.+.+.+..
T Consensus 66 ~~~~~dmv-iea-v~edl~Lk~~l~~~le~v~~~~~i~gsntSs~~~~~isa~ld~~e~vvg~h~fspa~~m~LlEii~~ 143 (380)
T KOG1683|consen 66 GFANADMV-IEA-VFEDLELKHELFKSLEKVEPPKCIRGSNTSSLDINVISAGLDRPEMVVGMHFFSPAHWMQLLEIILA 143 (380)
T ss_pred ccccccee-ccc-hhhhHHHHHHHHHHHHhhcCCcceeeeccccCChHHHhhccCchhhhccccccCHHHHHHHHHHHHh
Confidence 68888888 664 999999999999999999999989999999876 8999999999876433222 22334444433
Q ss_pred --CCCCcEEEEEcCcccccc--ccccccCcEEEEeCCe--Eeeccccccccccccccccchhhhhccccccccccccccc
Q psy9494 100 --PAKKPIIAAITGYAVGQG--LDLALWCDLRFVEENV--LMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDN 173 (314)
Q Consensus 100 --~~~kPvIAav~G~a~GgG--~~lalacD~~ia~~~a--~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 173 (314)
.++.|+.+|+||.+--|| +-++.+|+|++..... ..+..+...++ |
T Consensus 144 ~~tS~~~iA~Ain~~~~~gk~~vvVg~c~gf~v~r~l~~y~~~~~~~l~e~--------g-------------------- 195 (380)
T KOG1683|consen 144 LYTSKLTIATAINGGSPAGKLPVVVGNCCGFRVNRLLPPYTIGLNELLLEI--------G-------------------- 195 (380)
T ss_pred cCCCchHHHHHHhcccccCCccEEeccCCceEEEecccHHHHHHHHHHHHc--------C--------------------
Confidence 999999999999999888 8899999999987432 23455555541 2
Q ss_pred ccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCC--CchHHHHH
Q psy9494 174 LSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNC--GTAVGEAM 234 (314)
Q Consensus 174 ~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~--~~l~~~a~ 234 (314)
.+| .-.-.+....|...+-..+..|.-++-+||.+-|+++++.+. +++.+..+
T Consensus 196 ------~~p--~~iD~~~t~fGf~~g~~~L~d~~gfdv~eal~~gl~~~~~~r~~eel~~~~~ 250 (380)
T KOG1683|consen 196 ------ADP--WLIDSLITKFGFRVGERALADGVGFDVAEALAVGLGDEIGPRIEEELLEKGR 250 (380)
T ss_pred ------CCH--HHHHHHHHhcCccccHHHHhhccCccHHHHHhhccchhccchhHHHHHHHHh
Confidence 221 112222333444444556778888999999999999999984 44444433
No 111
>PRK12553 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=98.32 E-value=1.5e-06 Score=78.75 Aligned_cols=153 Identities=16% Similarity=0.174 Sum_probs=93.6
Q ss_pred CCCHHHHHHHHHHHHHhhhCCCccEEEEE--cCCCCccccCCcccccCCCCchhHHHHHHHHhcCCCCcEEEEEcCcccc
Q psy9494 38 AINLKTLDALQENIKRFEDDTESPLAILY--GQEGNFCSGFDLHELDENPDTKLFDDFREFLQKPAKKPIIAAITGYAVG 115 (314)
Q Consensus 38 al~~~~~~eL~~al~~~~~d~~vr~vVlt--g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~kPvIAav~G~a~G 115 (314)
.++..+..++.+.|..++..+..+.|.|. +.|+..-+|. .+.+.++ ..+.||++.+.|.|++
T Consensus 43 ~I~~~~~~~i~~~L~~l~~~~~~~~I~l~INSpGG~v~~g~---------------~I~d~i~-~~~~~v~t~~~G~aaS 106 (207)
T PRK12553 43 QVDDASANDVMAQLLVLESIDPDRDITLYINSPGGSVTAGD---------------AIYDTIQ-FIRPDVQTVCTGQAAS 106 (207)
T ss_pred eECHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCCcHHHHH---------------HHHHHHH-hcCCCcEEEEEeehhh
Confidence 56789999999999999876544444443 4454433322 2333333 5677999999999999
Q ss_pred ccccccccCc--EEEEeCCeEeecccccc-ccccccccccchhhhhcccccccccccccccccccccCCCCchHHHHHHH
Q psy9494 116 QGLDLALWCD--LRFVEENVLMGFYNRRF-VYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQ 192 (314)
Q Consensus 116 gG~~lalacD--~~ia~~~a~f~~pe~~~-G~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~g~~~~l~~ 192 (314)
.|..++++|| .|++.+++.|.+-.... |- .-| ...+-..+.+-..-........+.+
T Consensus 107 aa~lI~~ag~~~~R~~~p~s~imiH~p~~~~~------~~G--------------~a~d~~~~~~~l~~~~~~~~~~ya~ 166 (207)
T PRK12553 107 AGAVLLAAGTPGKRFALPNARILIHQPSLGGG------IRG--------------QASDLEIQAREILRMRERLERILAE 166 (207)
T ss_pred HHHHHHHcCCcCcEEECCCchhhhcCccccCC------Ccc--------------CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999 58999999887544321 10 000 0000000000000000001122233
Q ss_pred Hhh--HHHHHHHHhcCCCCCHHHHHHCCCceeeeCC
Q psy9494 193 MIG--TSRTMDMISLGRHITAREALDWGLCNKMVNC 226 (314)
Q Consensus 193 ~vG--~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~ 226 (314)
.-| .....+++-.+..++|+||+++||||++++.
T Consensus 167 ~tg~~~e~i~~~~~~~~~lta~EA~e~GliD~I~~~ 202 (207)
T PRK12553 167 HTGQSVEKIRKDTDRDKWLTAEEAKDYGLVDQIITS 202 (207)
T ss_pred HhCCCHHHHHHHHhcCccccHHHHHHcCCccEEcCc
Confidence 333 2445567778899999999999999999975
No 112
>cd07017 S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activ
Probab=98.30 E-value=1.5e-06 Score=76.34 Aligned_cols=149 Identities=17% Similarity=0.177 Sum_probs=93.0
Q ss_pred CCCHHHHHHHHHHHHHhhhCCCccEEEEE--cCCCCccccCCcccccCCCCchhHHHHHHHHhcCCCCcEEEEEcCcccc
Q psy9494 38 AINLKTLDALQENIKRFEDDTESPLAILY--GQEGNFCSGFDLHELDENPDTKLFDDFREFLQKPAKKPIIAAITGYAVG 115 (314)
Q Consensus 38 al~~~~~~eL~~al~~~~~d~~vr~vVlt--g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~kPvIAav~G~a~G 115 (314)
.++..+..++...+..+..++..+.|+|. +.|+...+| ..+.+.++ ..+.|+++.+.|.|.+
T Consensus 17 ~I~~~~~~~i~~~l~~~~~~~~~~~i~l~inSpGG~v~~~---------------~~i~~~l~-~~~~~v~t~~~g~aaS 80 (171)
T cd07017 17 PIDDEVANLIIAQLLYLESEDPKKPIYLYINSPGGSVTAG---------------LAIYDTMQ-YIKPPVSTICLGLAAS 80 (171)
T ss_pred EEcHHHHHHHHHHHHHHHccCCCCceEEEEECCCCCHHHH---------------HHHHHHHH-hcCCCEEEEEEeEehh
Confidence 45678889999999999987665655555 445433322 22333333 5689999999999999
Q ss_pred ccccccccCc--EEEEeCCeEeeccccccccccccccccchhhhhcccccccccccccccccccccCCCCchHHHHHHHH
Q psy9494 116 QGLDLALWCD--LRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQM 193 (314)
Q Consensus 116 gG~~lalacD--~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~g~~~~l~~~ 193 (314)
+|..+++++| -|++.+++.|.+-+...+ ..|-. -+++.. .+....-.......+...
T Consensus 81 ~~~~i~~~g~~~~r~~~~~a~~~~h~~~~~-------~~g~~-~~~~~~-------------~~~l~~~~~~~~~~~~~~ 139 (171)
T cd07017 81 MGALLLAAGTKGKRYALPNSRIMIHQPLGG-------AGGQA-SDIEIQ-------------AKEILRLRRRLNEILAKH 139 (171)
T ss_pred HHHHHHHcCCCCCEEEccchHHHHcCCCcc-------CCCCH-HHHHHH-------------HHHHHHHHHHHHHHHHHH
Confidence 9999999999 799999998876655444 11100 000000 000000000111122222
Q ss_pred hhH--HHHHHHHhcCCCCCHHHHHHCCCceee
Q psy9494 194 IGT--SRTMDMISLGRHITAREALDWGLCNKM 223 (314)
Q Consensus 194 vG~--~~a~~lll~G~~~sA~eA~~~GLV~~v 223 (314)
.|. ....+++..++.++|+||+++||||+|
T Consensus 140 tg~~~~~i~~~~~~~~~lta~EA~e~GiiD~V 171 (171)
T cd07017 140 TGQPLEKIEKDTDRDRYMSAEEAKEYGLIDKI 171 (171)
T ss_pred hCCCHHHHHHHhhCCccccHHHHHHcCCCccC
Confidence 232 345566778899999999999999975
No 113
>PRK12319 acetyl-CoA carboxylase subunit alpha; Provisional
Probab=98.30 E-value=4.6e-05 Score=71.33 Aligned_cols=137 Identities=18% Similarity=0.195 Sum_probs=91.5
Q ss_pred CCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCchhHHHHHHHHhc--CCCCcEEEEEcCcc
Q psy9494 36 INAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTKLFDDFREFLQK--PAKKPIIAAITGYA 113 (314)
Q Consensus 36 ~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~--~~~kPvIAav~G~a 113 (314)
..+++++......+.++.+.+. .+-+|-|.-.++++. |.+-.+ ......+...+.. ..+.|+|+.|-|.|
T Consensus 76 ~G~~~~~g~rKa~R~~~lA~~~-~lPvV~lvDtpGa~~-g~~aE~------~G~~~~ia~~~~~~s~~~VP~IsVI~G~~ 147 (256)
T PRK12319 76 FGQPHPEGYRKALRLMKQAEKF-GRPVVTFINTAGAYP-GVGAEE------RGQGEAIARNLMEMSDLKVPIIAIIIGEG 147 (256)
T ss_pred CCCCCHHHHHHHHHHHHHHHHc-CCCEEEEEECCCcCC-CHhHHh------ccHHHHHHHHHHHHhCCCCCEEEEEeCCc
Confidence 4678899999999999888775 577777776555553 332210 0111223232222 78999999999999
Q ss_pred ccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhcccccccccccccccccccccCCCCchHHHHHHHH
Q psy9494 114 VGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQM 193 (314)
Q Consensus 114 ~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~g~~~~l~~~ 193 (314)
.|||......||++++.+++.++. ++|.+.+...+...
T Consensus 148 ~gGgA~a~~~~D~v~m~~~a~~~v------------------------------------------~~pe~~a~il~~~~ 185 (256)
T PRK12319 148 GSGGALALAVADQVWMLENTMYAV------------------------------------------LSPEGFASILWKDG 185 (256)
T ss_pred CcHHHHHhhcCCEEEEecCceEEE------------------------------------------cCHHHHHHHHhcCc
Confidence 999888888999999999988751 44444333333221
Q ss_pred hhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCC
Q psy9494 194 IGTSRTMDMISLGRHITAREALDWGLCNKMVNC 226 (314)
Q Consensus 194 vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~ 226 (314)
--...+.+.+ .+++.++++.|+||+|++.
T Consensus 186 ~~a~~aa~~~----~~~a~~l~~~g~iD~ii~e 214 (256)
T PRK12319 186 SRATEAAELM----KITAGELLEMGVVDKVIPE 214 (256)
T ss_pred ccHHHHHHHc----CCCHHHHHHCCCCcEecCC
Confidence 1112222332 7799999999999999984
No 114
>PRK00277 clpP ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=98.23 E-value=3.1e-06 Score=76.28 Aligned_cols=153 Identities=14% Similarity=0.113 Sum_probs=88.5
Q ss_pred CCCCHHHHHHHHHHHHHhhhCCCccEEEEE--cCCCCccccCCcccccCCCCchhHHHHHHHHhcCCCCcEEEEEcCccc
Q psy9494 37 NAINLKTLDALQENIKRFEDDTESPLAILY--GQEGNFCSGFDLHELDENPDTKLFDDFREFLQKPAKKPIIAAITGYAV 114 (314)
Q Consensus 37 Nal~~~~~~eL~~al~~~~~d~~vr~vVlt--g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~kPvIAav~G~a~ 114 (314)
..++..+.+.+...|..++.++..+-|.+. +.|+...+| ..+.+.++ ..+.|+++.+.|.|+
T Consensus 38 g~I~~~~~~~i~~~L~~l~~~~~~~~I~l~InSpGG~v~~g---------------~~I~d~i~-~~~~~v~t~~~G~aa 101 (200)
T PRK00277 38 GEVEDHMANLIVAQLLFLEAEDPDKDIYLYINSPGGSVTAG---------------LAIYDTMQ-FIKPDVSTICIGQAA 101 (200)
T ss_pred CEECHHHHHHHHHHHHHhhccCCCCCEEEEEECCCCcHHHH---------------HHHHHHHH-hcCCCEEEEEEeEec
Confidence 456788999999999988876544444443 444322222 12333333 567789999999999
Q ss_pred cccccccccCc--EEEEeCCeEeeccccccccccccccccchhhhhcccccccccccccccccccccCCCCchHHHHHHH
Q psy9494 115 GQGLDLALWCD--LRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQ 192 (314)
Q Consensus 115 GgG~~lalacD--~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~g~~~~l~~ 192 (314)
|+|..++++++ .|++.+++.+.+-...-| +-| ..-+-....+............+.+
T Consensus 102 S~a~~I~~ag~~~~r~~~p~s~imih~p~~~-------~~G--------------~a~di~~~a~~l~~~~~~~~~~~a~ 160 (200)
T PRK00277 102 SMGAFLLAAGAKGKRFALPNSRIMIHQPLGG-------FQG--------------QATDIEIHAREILKLKKRLNEILAE 160 (200)
T ss_pred cHHHHHHhcCCCCCEEEcCCceEEeccCccc-------ccC--------------ChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998754 577777777664333211 000 0000000000000000000122333
Q ss_pred HhhH--HHHHHHHhcCCCCCHHHHHHCCCceeeeCC
Q psy9494 193 MIGT--SRTMDMISLGRHITAREALDWGLCNKMVNC 226 (314)
Q Consensus 193 ~vG~--~~a~~lll~G~~~sA~eA~~~GLV~~vv~~ 226 (314)
..|. ....+++-.+..++|+||++.||||+|+..
T Consensus 161 ~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~Ii~~ 196 (200)
T PRK00277 161 HTGQPLEKIEKDTDRDNFMSAEEAKEYGLIDEVLTK 196 (200)
T ss_pred HHCcCHHHHHHHhhCCccccHHHHHHcCCccEEeec
Confidence 3342 445566677889999999999999999875
No 115
>PRK14512 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=98.14 E-value=8.5e-06 Score=73.40 Aligned_cols=152 Identities=16% Similarity=0.178 Sum_probs=88.8
Q ss_pred CCCHHHHHHHHHHHHHhhhCCCccEEEEE--cCCCCccccCCcccccCCCCchhHHHHHHHHhcCCCCcEEEEEcCcccc
Q psy9494 38 AINLKTLDALQENIKRFEDDTESPLAILY--GQEGNFCSGFDLHELDENPDTKLFDDFREFLQKPAKKPIIAAITGYAVG 115 (314)
Q Consensus 38 al~~~~~~eL~~al~~~~~d~~vr~vVlt--g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~kPvIAav~G~a~G 115 (314)
.++..+...+...|..++..+..+.|.|. +.|+..-+|.. +.+.++ ..+.||++.+.|.|++
T Consensus 31 ~I~~~~~~~i~~~L~~l~~~~~~~~I~l~INSpGG~v~ag~a---------------I~d~i~-~~~~~V~t~v~G~AaS 94 (197)
T PRK14512 31 EINKDLSELFQEKILLLEALDSKKPIFVYIDSEGGDIDAGFA---------------IFNMIR-FVKPKVFTIGVGLVAS 94 (197)
T ss_pred EEcHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCCHHHHHH---------------HHHHHH-hCCCCEEEEEEeeeHh
Confidence 46678889999999888763333444443 44544333322 233333 6788999999999999
Q ss_pred ccccccccCcE--EEEeCCeEeeccccccccccccccccchhhhhcccccccccccccccccccccCCCCchHHHHHHHH
Q psy9494 116 QGLDLALWCDL--RFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQM 193 (314)
Q Consensus 116 gG~~lalacD~--~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~g~~~~l~~~ 193 (314)
.|.-++++||- |++.+++.+..-...-++ -|-.- .++..-..+ .-........+...
T Consensus 95 aaslIl~ag~~~~R~~~p~s~imiHqP~~~~-------~G~a~-di~~~a~~l-------------~~~~~~i~~~~a~~ 153 (197)
T PRK14512 95 AAALIFLAAKKESRFSLPNARYLLHQPLSGF-------KGVAT-DIEIYANEL-------------NKVKSELNDIIAKE 153 (197)
T ss_pred HHHHHHhcCCcCceeECCCCcEEEEcCcccc-------ccCHH-HHHHHHHHH-------------HHHHHHHHHHHHHH
Confidence 99999999985 899998877533221110 01000 000000000 00000001112222
Q ss_pred hhH--HHHHHHHhcCCCCCHHHHHHCCCceeeeCC
Q psy9494 194 IGT--SRTMDMISLGRHITAREALDWGLCNKMVNC 226 (314)
Q Consensus 194 vG~--~~a~~lll~G~~~sA~eA~~~GLV~~vv~~ 226 (314)
-|. .....++-....+||+||+++||||+|++.
T Consensus 154 tg~~~~~i~~~~~~d~~lta~EA~~yGliD~I~~~ 188 (197)
T PRK14512 154 TGQELDKVEKDTDRDFWLDSSSAVKYGLVFEVVET 188 (197)
T ss_pred hCcCHHHHHHhhhcCcccCHHHHHHcCCccEeecC
Confidence 232 335566666778999999999999999976
No 116
>CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional
Probab=98.14 E-value=9.2e-05 Score=71.29 Aligned_cols=137 Identities=13% Similarity=0.089 Sum_probs=92.7
Q ss_pred CCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCchhHHHHHHHHh--cCCCCcEEEEEcCcc
Q psy9494 36 INAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTKLFDDFREFLQ--KPAKKPIIAAITGYA 113 (314)
Q Consensus 36 ~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~--~~~~kPvIAav~G~a 113 (314)
..+++++.+....+.++.+++. .+-+|-|--.+++++ |.+-.+. .....+...+. .....|+|+.|-|.|
T Consensus 132 ~G~~~p~g~rKa~Rlm~lA~~f-~lPIItlvDTpGA~~-G~~AE~~------G~~~aiar~l~~~a~~~VP~IsVViGeg 203 (322)
T CHL00198 132 FGMPSPGGYRKALRLMKHANKF-GLPILTFIDTPGAWA-GVKAEKL------GQGEAIAVNLREMFSFEVPIICTIIGEG 203 (322)
T ss_pred CCCCCHHHHHHHHHHHHHHHHc-CCCEEEEEeCCCcCc-CHHHHHH------hHHHHHHHHHHHHHcCCCCEEEEEeCcc
Confidence 4678899999999999988875 567776665555554 3222110 01122222222 178999999999999
Q ss_pred ccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhcccccccccccccccccccccCCCCchHHHHHHHH
Q psy9494 114 VGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQM 193 (314)
Q Consensus 114 ~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~g~~~~l~~~ 193 (314)
.|||......||++++.+++.++ + +.|.+.++..+..
T Consensus 204 gsGGAlal~~aD~V~m~e~a~~s-------V-----------------------------------isPEg~a~Il~~d- 240 (322)
T CHL00198 204 GSGGALGIGIGDSIMMLEYAVYT-------V-----------------------------------ATPEACAAILWKD- 240 (322)
T ss_pred cHHHHHhhhcCCeEEEeCCeEEE-------e-----------------------------------cCHHHHHHHHhcc-
Confidence 88887655679999999999876 1 5555544444333
Q ss_pred hhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCC
Q psy9494 194 IGTSRTMDMISLGRHITAREALDWGLCNKMVNC 226 (314)
Q Consensus 194 vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~ 226 (314)
..+|.+ +...-++||++.++.|+||+|+|.
T Consensus 241 --~~~a~~-aA~~~~ita~dL~~~giiD~ii~E 270 (322)
T CHL00198 241 --SKKSLD-AAEALKITSEDLKVLGIIDEIIPE 270 (322)
T ss_pred --hhhHHH-HHHHcCCCHHHHHhCCCCeEeccC
Confidence 233333 344567999999999999999983
No 117
>TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the alpha chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=98.14 E-value=0.00011 Score=70.75 Aligned_cols=136 Identities=15% Similarity=0.089 Sum_probs=89.8
Q ss_pred CCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCchhHHHHHHHHh--cCCCCcEEEEEcCcc
Q psy9494 36 INAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTKLFDDFREFLQ--KPAKKPIIAAITGYA 113 (314)
Q Consensus 36 ~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~--~~~~kPvIAav~G~a 113 (314)
.-+++++......+.++.+++- .+-+|-|.-.+++++ |.+-.+. .....+.+.+. ....+|+|+.|-|.|
T Consensus 129 ~G~~~p~g~rKa~R~m~lA~~f-~iPvVtlvDTpGa~~-g~~aE~~------G~~~aia~~l~a~s~~~VP~IsVViGeg 200 (316)
T TIGR00513 129 FGMPAPEGYRKALRLMKMAERF-KMPIITFIDTPGAYP-GIGAEER------GQSEAIARNLREMARLGVPVICTVIGEG 200 (316)
T ss_pred CCCCCHHHHHHHHHHHHHHHHc-CCCEEEEEECCCCCC-CHHHHHH------HHHHHHHHHHHHHHcCCCCEEEEEeccc
Confidence 4678899999999999888865 577777765555544 2221111 01122223232 178999999999999
Q ss_pred ccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhcccccccccccccccccccccCCCCchHHHHHHHH
Q psy9494 114 VGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQM 193 (314)
Q Consensus 114 ~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~g~~~~l~~~ 193 (314)
.|||......||++++.+++.++ + ++|.+.++..+...
T Consensus 201 gsGGAla~~~aD~v~m~~~a~~s-------V-----------------------------------isPEg~a~Il~kd~ 238 (316)
T TIGR00513 201 GSGGALAIGVGDKVNMLEYSTYS-------V-----------------------------------ISPEGCAAILWKDA 238 (316)
T ss_pred ccHHHhhhccCCEEEEecCceEE-------e-----------------------------------cCHHHHHHHhccch
Confidence 88877655579999999999876 1 55554444433331
Q ss_pred hhHHHHHHHHhcCCCCCHHHHHHCCCceeeeC
Q psy9494 194 IGTSRTMDMISLGRHITAREALDWGLCNKMVN 225 (314)
Q Consensus 194 vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~ 225 (314)
.++.+.. .-.++++.++++.|+||+|+|
T Consensus 239 ---~~a~~aa-e~~~~ta~~l~~~G~iD~II~ 266 (316)
T TIGR00513 239 ---SKAPKAA-EAMKITAPDLKELGLIDSIIP 266 (316)
T ss_pred ---hhHHHHH-HHccCCHHHHHHCCCCeEecc
Confidence 2222221 125678999999999999998
No 118
>PRK10949 protease 4; Provisional
Probab=98.11 E-value=1.8e-05 Score=82.39 Aligned_cols=175 Identities=15% Similarity=0.097 Sum_probs=104.5
Q ss_pred HHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCchhHHHHHHHHhc--CCCCcEEEEEcCccccccccc
Q psy9494 43 TLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTKLFDDFREFLQK--PAKKPIIAAITGYAVGQGLDL 120 (314)
Q Consensus 43 ~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~--~~~kPvIAav~G~a~GgG~~l 120 (314)
.+.++.++|+++.+|+.|++|||.-.+.. |..+.. .+++.+.+.+ ...|||||. ...+.-+++.|
T Consensus 96 ~l~div~~i~~Aa~D~rIkgivL~i~s~g---G~~~a~---------~~eI~~ai~~fk~sGKpVvA~-~~~~~s~~YyL 162 (618)
T PRK10949 96 SLFDIVNTIRQAKDDRNITGIVLDLKNFA---GADQPS---------MQYIGKALREFRDSGKPVYAV-GDSYSQGQYYL 162 (618)
T ss_pred cHHHHHHHHHHHhcCCCceEEEEEeCCCC---CccHHH---------HHHHHHHHHHHHHhCCeEEEE-ecCccchhhhh
Confidence 45689999999999999999999964311 111110 1223333322 568999985 44455779999
Q ss_pred cccCcEEEEeCCeEeeccccccc--cccccccccchhhhhcccccccccccccccccccccCCCCchHHHH---------
Q psy9494 121 ALWCDLRFVEENVLMGFYNRRFV--YLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRR--------- 189 (314)
Q Consensus 121 alacD~~ia~~~a~f~~pe~~~G--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~g~~~~--------- 189 (314)
|.+||-+++.+...+++.-.... ++...|.++||-...+++...+-...+ ++..+. ....-..
T Consensus 163 ASaAD~I~l~P~G~v~~~G~~~~~~~~k~lLdKlGV~~~v~r~G~yKsA~ep--f~r~~m----S~e~Re~~~~ll~~l~ 236 (618)
T PRK10949 163 ASFANKIYLSPQGVVDLHGFATNGLYYKSLLDKLKVSTHVFRVGTYKSAVEP--FIRDDM----SPAAREADSRWIGELW 236 (618)
T ss_pred hhhCCEEEECCCceEEEeeeecchhhHHHHHHHcCCeEEEEEecCCCCCCCc--ccCCCC----CHHHHHHHHHHHHHHH
Confidence 99999999999887654332211 256677888888887777655533321 111111 0111111
Q ss_pred --HHHHhhHHH----------HHHHHhc---CCCCCHHHHHHCCCceeeeCCCchHHHHHHH
Q psy9494 190 --LGQMIGTSR----------TMDMISL---GRHITAREALDWGLCNKMVNCGTAVGEAMTR 236 (314)
Q Consensus 190 --l~~~vG~~~----------a~~lll~---G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~ 236 (314)
+...|...| +..++-. -...+|++|++.||||++...+++.+...+.
T Consensus 237 ~~f~~~VA~~R~l~~~~v~~~a~~~~~~l~~~~~~~a~~Al~~GLVD~l~~~de~~~~l~~~ 298 (618)
T PRK10949 237 QNYLNTVAANRQITPQQLFPGAQGILEGLTKVGGDTAKYALDNKLVDALASSAEIEKALTKA 298 (618)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCccHHHHHHCCCCCcCCCHHHHHHHHHHH
Confidence 111122111 1122211 1236899999999999999877766555443
No 119
>PF00574 CLP_protease: Clp protease; InterPro: IPR001907 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase family S14 (ClpP endopeptidase family, clan SK). ClpP is an ATP-dependent protease that cleaves a number of proteins, such as casein and albumin []. It exists as a heterodimer of ATP-binding regulatory A and catalytic P subunits, both of which are required for effective levels of protease activity in the presence of ATP [], although the P subunit alone does possess some catalytic activity. This family of sequences represent the P subunit. Proteases highly similar to ClpP have been found to be encoded in the genome of bacteria, metazoa, some viruses and in the chloroplast of plants. A number of the proteins in this family are classified as non-peptidase homologues as they have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for catalytic activity. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2ZL3_L 2ZL0_F 2ZL2_M 2ZL4_C 1TG6_D 2F6I_D 3V5I_b 3V5E_M 3QWD_D 2DEO_A ....
Probab=98.10 E-value=2.2e-06 Score=75.51 Aligned_cols=152 Identities=14% Similarity=0.254 Sum_probs=89.2
Q ss_pred CCCHHHHHHHHHHHHHhhhCCCccE--EEEEcCCCCccccCCcccccCCCCchhHHHHHHHHhcCCCCcEEEEEcCcccc
Q psy9494 38 AINLKTLDALQENIKRFEDDTESPL--AILYGQEGNFCSGFDLHELDENPDTKLFDDFREFLQKPAKKPIIAAITGYAVG 115 (314)
Q Consensus 38 al~~~~~~eL~~al~~~~~d~~vr~--vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~kPvIAav~G~a~G 115 (314)
.+|.++...+.+.|..++..+..+- |.|.+.|+...+|. .+.+.++ .++.|+++.+.|.|.+
T Consensus 24 ~I~~~~~~~~~~~L~~l~~~~~~~~i~i~INSpGG~v~~g~---------------~i~~~i~-~~~~~v~t~~~G~aaS 87 (182)
T PF00574_consen 24 PIDEESANRLISQLLYLENEDKNKPINIYINSPGGDVDAGL---------------AIYDAIR-SSKAPVTTVVLGLAAS 87 (182)
T ss_dssp SBSHHHHHHHHHHHHHHHHHTSSSEEEEEEEECEBCHHHHH---------------HHHHHHH-HSSSEEEEEEEEEEET
T ss_pred ccCHHHHHHHHHHHHHHhccCCCceEEEEEcCCCCccHHHH---------------HHHHHHH-hcCCCeEEEEeCcccc
Confidence 4688999999998888853333332 23344443333322 2333344 6799999999999999
Q ss_pred ccccccccCcE--EEEeCCeEeeccccccccccccccccchhhhhcccccccccccccccccccccCCCCchHHHHHHHH
Q psy9494 116 QGLDLALWCDL--RFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQM 193 (314)
Q Consensus 116 gG~~lalacD~--~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~g~~~~l~~~ 193 (314)
.|..++++||. |++.+++.|.+-+...+. -| -..+++.-...+. .-.......+...
T Consensus 88 aa~~i~~ag~~~~R~~~~~s~~m~H~p~~~~-------~g-~~~~l~~~~~~l~-------------~~~~~~~~~~~~~ 146 (182)
T PF00574_consen 88 AATLIFLAGDKGKRYASPNSRFMIHQPSTGS-------GG-NASELREQAKELE-------------KLNERIANIYAER 146 (182)
T ss_dssp HHHHHHHTSSTTTEEE-TT-EEEES-CEEEE-------EE-EHHHHHHHHHHHH-------------HHHHHHHHHHHHH
T ss_pred ceehhhhcCCcCceeeeecCEEEeecceeec-------cc-ccchhHHHHHHHH-------------HHHHHHHHHHHHH
Confidence 99999999999 899999999877776551 01 0000000000000 0000011122222
Q ss_pred hh--HHHHHHHHhcCCCCCHHHHHHCCCceeeeCC
Q psy9494 194 IG--TSRTMDMISLGRHITAREALDWGLCNKMVNC 226 (314)
Q Consensus 194 vG--~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~ 226 (314)
.| .....+++-....++|+||+++||||+|...
T Consensus 147 tg~~~~~i~~~~~~~~~l~a~EA~~~GiiD~I~~~ 181 (182)
T PF00574_consen 147 TGLSKEEIEELMDRDTWLSAEEALEYGIIDEIIES 181 (182)
T ss_dssp HTS-HHHHHHHCSSTEEEEHHHHHHHTSSSEEESS
T ss_pred hCCcHHHHHHHHhCCccccHHHHHHcCCCCEeccC
Confidence 22 2334455666667899999999999999853
No 120
>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional
Probab=98.08 E-value=0.00014 Score=72.08 Aligned_cols=136 Identities=15% Similarity=0.137 Sum_probs=88.8
Q ss_pred CCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCchhHHHHHHHHhc--CCCCcEEEEEcCccc
Q psy9494 37 NAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTKLFDDFREFLQK--PAKKPIIAAITGYAV 114 (314)
Q Consensus 37 Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~--~~~kPvIAav~G~a~ 114 (314)
.+++++.++...+.++.++.. .+-+|-|.-.++++ .|.+-.+. .....+...+.. ...+|+|+.|-|.+.
T Consensus 200 G~~~peGyRKAlR~mklAekf-~lPIVtLVDTpGA~-pG~~AEe~------Gqa~aIAr~l~ams~l~VPiISVViGeGg 271 (431)
T PLN03230 200 AMPQPNGYRKALRFMRHAEKF-GFPILTFVDTPGAY-AGIKAEEL------GQGEAIAFNLREMFGLRVPIIATVIGEGG 271 (431)
T ss_pred CCCCHHHHHHHHHHHHHHHHc-CCCEEEEEeCCCcC-CCHHHHHH------hHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 568899999999999988875 57777766555444 22222110 011222222221 789999999999996
Q ss_pred cccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhcccccccccccccccccccccCCCCchHHHHHHHHh
Q psy9494 115 GQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMI 194 (314)
Q Consensus 115 GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~g~~~~l~~~v 194 (314)
|||.....+||++++.+++.++ + +.|.+.++..+....
T Consensus 272 SGGAlalg~aD~VlMle~A~ys-------V-----------------------------------isPEgaAsILwkd~~ 309 (431)
T PLN03230 272 SGGALAIGCGNRMLMMENAVYY-------V-----------------------------------ASPEACAAILWKSAA 309 (431)
T ss_pred cHHHHHhhcCCEEEEecCCEEE-------e-----------------------------------cCHHHHHHHHhcccc
Confidence 6665555578999999998765 1 444444444443322
Q ss_pred hHHHHHHHHhcCCCCCHHHHHHCCCceeeeCC
Q psy9494 195 GTSRTMDMISLGRHITAREALDWGLCNKMVNC 226 (314)
Q Consensus 195 G~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~ 226 (314)
-...|.+ .-.+||.++++.|+||+|++.
T Consensus 310 ~A~eAAe----alkitA~dL~~~GiID~II~E 337 (431)
T PLN03230 310 AAPKAAE----ALRITAAELVKLGVVDEIVPE 337 (431)
T ss_pred chHHHHH----HcCCCHHHHHhCCCCeEeccC
Confidence 2222333 338999999999999999973
No 121
>PRK05724 acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated
Probab=97.99 E-value=0.0003 Score=67.81 Aligned_cols=137 Identities=15% Similarity=0.122 Sum_probs=92.4
Q ss_pred CCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCchhHHHHHHHHh--cCCCCcEEEEEcCcc
Q psy9494 36 INAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTKLFDDFREFLQ--KPAKKPIIAAITGYA 113 (314)
Q Consensus 36 ~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~--~~~~kPvIAav~G~a 113 (314)
.-+++++......+.++.+++- .+.+|-|.-.+++++ |.+-.+- .....+...+. .....|+|+.|-|.|
T Consensus 129 ~G~~~peg~rKa~R~m~lA~~f-~lPIVtlvDTpGa~~-G~~aE~~------G~~~aia~~l~~~a~~~VP~IsVIiGeg 200 (319)
T PRK05724 129 FGMPRPEGYRKALRLMKMAEKF-GLPIITFIDTPGAYP-GIGAEER------GQSEAIARNLREMARLKVPIICTVIGEG 200 (319)
T ss_pred CCCCCHHHHHHHHHHHHHHHHc-CCCEEEEEeCCCCCC-CHHHHhc------cHHHHHHHHHHHHhCCCCCEEEEEeCCc
Confidence 4578899999999988888765 577777776655554 3322110 01122222232 189999999999999
Q ss_pred ccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhcccccccccccccccccccccCCCCchHHHHHHHH
Q psy9494 114 VGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQM 193 (314)
Q Consensus 114 ~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~g~~~~l~~~ 193 (314)
.|||......||++++.+++.++ + ++|.+.++..+..
T Consensus 201 ~sGGAla~~~aD~v~m~~~A~~s-------v-----------------------------------isPEg~a~Il~~~- 237 (319)
T PRK05724 201 GSGGALAIGVGDRVLMLEYSTYS-------V-----------------------------------ISPEGCASILWKD- 237 (319)
T ss_pred cHHHHHHHhccCeeeeecCceEe-------e-----------------------------------cCHHHHHHHHhcC-
Confidence 88887655679999999999875 1 5554444443332
Q ss_pred hhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCC
Q psy9494 194 IGTSRTMDMISLGRHITAREALDWGLCNKMVNC 226 (314)
Q Consensus 194 vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~ 226 (314)
..++.+..- .-.+++.++++.|+||+|++.
T Consensus 238 --~~~a~~aae-~~~ita~~l~~~g~iD~II~E 267 (319)
T PRK05724 238 --ASKAPEAAE-AMKITAQDLKELGIIDEIIPE 267 (319)
T ss_pred --chhHHHHHH-HcCCCHHHHHHCCCceEeccC
Confidence 123333322 556899999999999999973
No 122
>PF01972 SDH_sah: Serine dehydrogenase proteinase; InterPro: IPR002825 This family of archaebacterial proteins, formerly known as DUF114, has been found to be a serine dehydrogenase proteinase distantly related to ClpP proteinases that belong to the serine proteinase superfamily. The family belong to MEROPS peptidase family S49; they are mostly unassigned peptidases but include the archaean signal peptide peptidase 1 []. The family has a catalytic triad of Ser, Asp, His residues, which shows an altered residue ordering compared with the ClpP proteinases but similar to that of the carboxypeptidase clan []. ; GO: 0016021 integral to membrane
Probab=97.89 E-value=0.0001 Score=69.31 Aligned_cols=90 Identities=13% Similarity=0.148 Sum_probs=69.7
Q ss_pred CCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCchhHHHHHHHHhcCCCCcEEEEEcCccccc
Q psy9494 37 NAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTKLFDDFREFLQKPAKKPIIAAITGYAVGQ 116 (314)
Q Consensus 37 Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~kPvIAav~G~a~Gg 116 (314)
+.++.+..+++.++++...++..+-.+ |...| ++.. ....+.+.+. +.+.|+++.|+.+|.++
T Consensus 70 ~~I~i~dse~v~raI~~~~~~~~IdLi-i~TpG------G~v~---------AA~~I~~~l~-~~~~~v~v~VP~~A~SA 132 (285)
T PF01972_consen 70 RYIDIDDSEFVLRAIREAPKDKPIDLI-IHTPG------GLVD---------AAEQIARALR-EHPAKVTVIVPHYAMSA 132 (285)
T ss_pred eeEcHhhHHHHHHHHHhcCCCCceEEE-EECCC------CcHH---------HHHHHHHHHH-hCCCCEEEEECcccccH
Confidence 578999999999999999887766444 33333 2221 1123444444 67889999999999999
Q ss_pred cccccccCcEEEEeCCeEeeccccccc
Q psy9494 117 GLDLALWCDLRFVEENVLMGFYNRRFV 143 (314)
Q Consensus 117 G~~lalacD~~ia~~~a~f~~pe~~~G 143 (314)
|.-+|++||-+++.+++.+|-....+|
T Consensus 133 GTlIALaADeIvM~p~a~LGpiDPqi~ 159 (285)
T PF01972_consen 133 GTLIALAADEIVMGPGAVLGPIDPQIG 159 (285)
T ss_pred HHHHHHhCCeEEECCCCccCCCCcccc
Confidence 999999999999999999998888887
No 123
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=97.89 E-value=0.00034 Score=73.30 Aligned_cols=137 Identities=12% Similarity=0.065 Sum_probs=91.7
Q ss_pred CCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCchhHHHHHHHHh--cCCCCcEEEEEcCcc
Q psy9494 36 INAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTKLFDDFREFLQ--KPAKKPIIAAITGYA 113 (314)
Q Consensus 36 ~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~--~~~~kPvIAav~G~a 113 (314)
..+.+++.+....+.++.++.. .+-+|-|--.+++++ |.+-.+. .....+...+. ....+|+|+.|-|.|
T Consensus 220 fG~~~peGyRKAlRlmkLAekf-gLPIVtLVDTpGA~p-G~~AEe~------Gq~~aIArnl~amasl~VP~ISVViGeg 291 (762)
T PLN03229 220 FGMPTPHGYRKALRMMYYADHH-GFPIVTFIDTPGAYA-DLKSEEL------GQGEAIAHNLRTMFGLKVPIVSIVIGEG 291 (762)
T ss_pred CCCCCHHHHHHHHHHHHHHHHc-CCCEEEEEECCCcCC-CchhHHH------hHHHHHHHHHHHHhCCCCCEEEEEeCCc
Confidence 4578888899999988888765 577777665554544 2222211 01122222222 178999999999999
Q ss_pred ccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhcccccccccccccccccccccCCCCchHHHHHHHH
Q psy9494 114 VGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQM 193 (314)
Q Consensus 114 ~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~g~~~~l~~~ 193 (314)
.|||......||+++|.+++.++ + +.|.+.++..+...
T Consensus 292 gSGGAlA~g~aD~VlMle~A~~s-------V-----------------------------------isPEgaAsILwkd~ 329 (762)
T PLN03229 292 GSGGALAIGCANKLLMLENAVFY-------V-----------------------------------ASPEACAAILWKSA 329 (762)
T ss_pred chHHHHHhhcCCEEEEecCCeEE-------e-----------------------------------cCHHHHHHHHhcCc
Confidence 98888877789999999998765 1 44444444333331
Q ss_pred hhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCC
Q psy9494 194 IGTSRTMDMISLGRHITAREALDWGLCNKMVNC 226 (314)
Q Consensus 194 vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~ 226 (314)
.+|.+ +...-.+||++.++.|+||+|+|.
T Consensus 330 ---~~A~e-AAe~lkiTa~dL~~lGiiD~IIpE 358 (762)
T PLN03229 330 ---KAAPK-AAEKLRITAQELCRLQIADGIIPE 358 (762)
T ss_pred ---ccHHH-HHHHcCCCHHHHHhCCCCeeeccC
Confidence 22222 344567999999999999999983
No 124
>CHL00028 clpP ATP-dependent Clp protease proteolytic subunit
Probab=97.86 E-value=4.9e-05 Score=68.70 Aligned_cols=149 Identities=12% Similarity=0.131 Sum_probs=92.4
Q ss_pred CCCCHHHHHHHHHHHHHhhhCCCccEEEEE--cCCCCccccCCcccccCCCCchhHHHHHHHHhcCCCCcEEEEEcCccc
Q psy9494 37 NAINLKTLDALQENIKRFEDDTESPLAILY--GQEGNFCSGFDLHELDENPDTKLFDDFREFLQKPAKKPIIAAITGYAV 114 (314)
Q Consensus 37 Nal~~~~~~eL~~al~~~~~d~~vr~vVlt--g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~kPvIAav~G~a~ 114 (314)
..+|.++..++...|-.++.++..+-|.+. +.|+...+|. .+.+.++ ..+.||...+.|.|+
T Consensus 37 ~~i~~~~a~~ii~~ll~L~~~~~~~~I~l~INSpGG~v~~g~---------------aIyd~m~-~~~~~V~Tv~~G~Aa 100 (200)
T CHL00028 37 QEVDDEIANQLIGLMVYLSIEDDTKDLYLFINSPGGSVISGL---------------AIYDTMQ-FVKPDVHTICLGLAA 100 (200)
T ss_pred CeecHHHHHHHHHHHHHHhccCCCCCEEEEEeCCCcchhhHH---------------HHHHHHH-hcCCCEEEEEEEehH
Confidence 367899999999999998855444444443 4444333321 2333344 678899999999999
Q ss_pred cccccccccCc--EEEEeCCeEeeccccccccccccccccchhhhhcccccccccccccccccccccCC------CCchH
Q psy9494 115 GQGLDLALWCD--LRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIP------TCDVT 186 (314)
Q Consensus 115 GgG~~lalacD--~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~------p~~g~ 186 (314)
+.|.-+++++| -|++.++++|.+-....|+ .-| . ..|+... .....
T Consensus 101 S~aslIl~aG~kg~R~~~p~s~imiHqp~~~~------~~G--------------~------a~di~~~a~~l~~~~~~~ 154 (200)
T CHL00028 101 SMASFILAGGEITKRLAFPHARVMIHQPASSF------YEG--------------Q------ASEFVLEAEELLKLRETI 154 (200)
T ss_pred HHHHHHHhCCCCCCEEecCCCeEEEecCccCc------CCC--------------C------HHHHHHHHHHHHHHHHHH
Confidence 99999999999 5999999988654432220 000 0 0000000 00000
Q ss_pred HHHHHHHhhH--HHHHHHHhcCCCCCHHHHHHCCCceeeeCCC
Q psy9494 187 IRRLGQMIGT--SRTMDMISLGRHITAREALDWGLCNKMVNCG 227 (314)
Q Consensus 187 ~~~l~~~vG~--~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~ 227 (314)
...+.+.-|. ....+++-....++|+||+++||||+|+.+.
T Consensus 155 ~~~ya~~Tg~~~e~i~~~~~r~~~lta~EA~eyGliD~I~~~~ 197 (200)
T CHL00028 155 TRVYAQRTGKPLWVISEDMERDVFMSATEAKAYGIVDLVAVNN 197 (200)
T ss_pred HHHHHHHHCcCHHHHHHHhhcCccCCHHHHHHcCCCcEEeecC
Confidence 1122222332 3344666677789999999999999998753
No 125
>TIGR00493 clpP ATP-dependent Clp protease, proteolytic subunit ClpP. This model for the proteolytic subunit ClpP has been rebuilt to a higher stringency. In every bacterial genome with the ClpXP machine, a ClpP protein will be found that scores with this model. In general, this ClpP member will be encoded adjacent to the clpX gene, as were all examples used in the seed alignment. A large fraction of genomes have one or more additional ClpP paralogs, sometimes encoded nearby and sometimes elsewhere. The stringency of the trusted cutoff used here excludes the more divergent ClpP paralogs from being called authentic ClpP by this model.
Probab=97.82 E-value=8.9e-05 Score=66.44 Aligned_cols=145 Identities=17% Similarity=0.155 Sum_probs=86.9
Q ss_pred CCCHHHHHHHHHHHHHhhhCCCccEEEEE--cCCCCccccCCcccccCCCCchhHHHHHHHHhcCCCCcEEEEEcCcccc
Q psy9494 38 AINLKTLDALQENIKRFEDDTESPLAILY--GQEGNFCSGFDLHELDENPDTKLFDDFREFLQKPAKKPIIAAITGYAVG 115 (314)
Q Consensus 38 al~~~~~~eL~~al~~~~~d~~vr~vVlt--g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~kPvIAav~G~a~G 115 (314)
.++..+.+++...|..++.++..+-|.+. +.|+...+| ..+.+.++ ..+.||...+.|.|.+
T Consensus 34 ~I~~~~~~~ii~~L~~l~~~~~~~~i~l~InSpGG~v~~g---------------~~I~d~l~-~~~~~v~t~~~G~AaS 97 (191)
T TIGR00493 34 EVNDSVANLIVAQLLFLEAEDPEKDIYLYINSPGGSITAG---------------LAIYDTMQ-FIKPDVSTICIGQAAS 97 (191)
T ss_pred EEChHHHHHHHHHHHHhhccCCCCCEEEEEECCCCCHHHH---------------HHHHHHHH-hcCCCEEEEEEEeecc
Confidence 55677888888888888876555555544 333322111 22333444 4455666777899999
Q ss_pred ccccccccCc--EEEEeCCeEeeccccccccccccccccchhhhhcccccccccccccccccccccCC------CCchHH
Q psy9494 116 QGLDLALWCD--LRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIP------TCDVTI 187 (314)
Q Consensus 116 gG~~lalacD--~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~------p~~g~~ 187 (314)
.|..+++++| .|++.+++.|.+-+..-|. -| . ..|+... -.....
T Consensus 98 aaslI~~aG~~~~r~~~p~s~imiH~p~~~~-------~G--------------~------a~d~~~~a~~l~~~~~~~~ 150 (191)
T TIGR00493 98 MGAFLLSAGAKGKRFSLPNSRIMIHQPLGGA-------QG--------------Q------ASDIEIQANEILRLKGLLN 150 (191)
T ss_pred HHHHHHhcCCCCcEEecCCceEEEecCcccc-------cC--------------C------cchhHHHHHHHHHHHHHHH
Confidence 9998888766 5999999988754443220 00 0 0000000 000011
Q ss_pred HHHHHHhhH--HHHHHHHhcCCCCCHHHHHHCCCceeeeC
Q psy9494 188 RRLGQMIGT--SRTMDMISLGRHITAREALDWGLCNKMVN 225 (314)
Q Consensus 188 ~~l~~~vG~--~~a~~lll~G~~~sA~eA~~~GLV~~vv~ 225 (314)
..+.+.-|. ....+++-.+..+||+||+++||||+++.
T Consensus 151 ~~ya~~tg~~~~~i~~~~~~~~~lta~EA~~~GliD~ii~ 190 (191)
T TIGR00493 151 DILANHTGQSLEQIEKDTERDFFMSAEEAKEYGLIDSVLT 190 (191)
T ss_pred HHHHHHHCcCHHHHHHHhhCCccCcHHHHHHcCCccEEec
Confidence 123333332 44556677888999999999999999874
No 126
>PRK12551 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=97.69 E-value=0.0002 Score=64.49 Aligned_cols=147 Identities=15% Similarity=0.178 Sum_probs=90.4
Q ss_pred CCCHHHHHHHHHHHHHhhhCCCccEEEEE--cCCCCccccCCcccccCCCCchhHHHHHHHHhcCCCCcEEEEEcCcccc
Q psy9494 38 AINLKTLDALQENIKRFEDDTESPLAILY--GQEGNFCSGFDLHELDENPDTKLFDDFREFLQKPAKKPIIAAITGYAVG 115 (314)
Q Consensus 38 al~~~~~~eL~~al~~~~~d~~vr~vVlt--g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~kPvIAav~G~a~G 115 (314)
.+|.++..++...|..++.+...+-|.+. +.|+..-+|. .+.+.++ ..+-||...+.|.|++
T Consensus 33 ~i~~~~a~~ii~~Ll~l~~~~~~~~I~l~INSpGG~v~~g~---------------aIyd~m~-~~~~~V~t~~~G~AaS 96 (196)
T PRK12551 33 PVTSDSANRIVAQLLFLEAEDPEKDIYLYINSPGGSVYDGL---------------GIFDTMQ-HVKPDVHTVCVGLAAS 96 (196)
T ss_pred eecHHHHHHHHHHHHHhhccCCCCCEEEEEeCCCcchhhHH---------------HHHHHHH-hcCCCEEEEEEEEehh
Confidence 57899999999999999865444444443 4444433332 2233333 5677889999999999
Q ss_pred ccccccccCcE--EEEeCCeEeeccccccccccccccccchhhhhcccccccccccccccccccccCC------CCchHH
Q psy9494 116 QGLDLALWCDL--RFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIP------TCDVTI 187 (314)
Q Consensus 116 gG~~lalacD~--~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~------p~~g~~ 187 (314)
.|.-+++++|- |++.+++++..-...-| .-| . ..|+.+- ......
T Consensus 97 ~AslIl~aG~~~~R~~~p~a~iMIHqP~~~-------~~G--------------~------a~di~~~a~~l~~~~~~~~ 149 (196)
T PRK12551 97 MGAFLLCAGAKGKRSSLQHSRIMIHQPLGG-------ARG--------------Q------ASDIRIQADEILFLKERLN 149 (196)
T ss_pred HHHHHHhCCCCCceecCCCCEEEEecCCcc-------cCC--------------C------cchHHHHHHHHHHHHHHHH
Confidence 99999999985 88889888764443211 000 0 0000000 000011
Q ss_pred HHHHHHhhH--HHHHHHHhcCCCCCHHHHHHCCCceeeeCCC
Q psy9494 188 RRLGQMIGT--SRTMDMISLGRHITAREALDWGLCNKMVNCG 227 (314)
Q Consensus 188 ~~l~~~vG~--~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~ 227 (314)
..+.+..|. ....+++-.-..+||+||+++||||+|++..
T Consensus 150 ~~ya~~tG~~~~~i~~~~~rd~~msa~EA~eyGliD~I~~~~ 191 (196)
T PRK12551 150 TELSERTGQPLERIQEDTDRDFFMSPSEAVEYGLIDLVIDKR 191 (196)
T ss_pred HHHHHHHCcCHHHHHHHhhcCcCCCHHHHHHcCCCcEEeccC
Confidence 122233332 2344556666789999999999999999763
No 127
>PRK14514 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=97.65 E-value=0.00026 Score=64.90 Aligned_cols=147 Identities=14% Similarity=0.109 Sum_probs=88.3
Q ss_pred CCCCHHHHHHHHHHHHHhhhCCCccEEEE--EcCCCCccccCCcccccCCCCchhHHHHHHHHhcCCCCcEEEEEcCccc
Q psy9494 37 NAINLKTLDALQENIKRFEDDTESPLAIL--YGQEGNFCSGFDLHELDENPDTKLFDDFREFLQKPAKKPIIAAITGYAV 114 (314)
Q Consensus 37 Nal~~~~~~eL~~al~~~~~d~~vr~vVl--tg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~kPvIAav~G~a~ 114 (314)
..+|..+.+++...|..++..+.-+-|.+ -+.|+...+|. .+.+.++ ..+-||...+.|.|+
T Consensus 61 ~~Idd~~a~~i~aqLl~L~~~~~~~~I~lyINSpGGsv~aGl---------------aIyd~m~-~~~~~V~tv~~G~AA 124 (221)
T PRK14514 61 TQIDDYTANTIQAQLLYLDSVDPGKDISIYINSPGGSVYAGL---------------GIYDTMQ-FISSDVATICTGMAA 124 (221)
T ss_pred CEEcHHHHHHHHHHHHHHhccCCCCCEEEEEECCCcchhhHH---------------HHHHHHH-hcCCCEEEEEEEEeh
Confidence 35678888888887777764332233333 34454444432 1233333 677789999999999
Q ss_pred cccccccccCcE--EEEeCCeEeeccccccccccccccccchhhhhcccccccccccccccccccccCC------CCchH
Q psy9494 115 GQGLDLALWCDL--RFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIP------TCDVT 186 (314)
Q Consensus 115 GgG~~lalacD~--~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~------p~~g~ 186 (314)
+.|.-+++++|. |++.+++.+.+-...-|. -| ...|+.+- .....
T Consensus 125 S~AslIl~aG~~gkR~~~pna~iMiHqP~~~~-------~G--------------------~a~di~i~a~el~~~~~~i 177 (221)
T PRK14514 125 SMASVLLVAGTKGKRSALPHSRVMIHQPLGGA-------QG--------------------QASDIEITAREIQKLKKEL 177 (221)
T ss_pred hHHHHHHhcCCCCceeeCCCCEEEeccCCccc-------CC--------------------CcchHHHHHHHHHHHHHHH
Confidence 999999999996 889999887644332220 00 00000000 00001
Q ss_pred HHHHHHHhhH--HHHHHHHhcCCCCCHHHHHHCCCceeeeCC
Q psy9494 187 IRRLGQMIGT--SRTMDMISLGRHITAREALDWGLCNKMVNC 226 (314)
Q Consensus 187 ~~~l~~~vG~--~~a~~lll~G~~~sA~eA~~~GLV~~vv~~ 226 (314)
...+.+..|. ....+.+-....++|+||+++||||+|+..
T Consensus 178 ~~iya~~TG~~~e~I~~~~~rd~wmtA~EA~eyGliD~Vi~~ 219 (221)
T PRK14514 178 YTIIADHSGTPFDKVWADSDRDYWMTAQEAKEYGMIDEVLIK 219 (221)
T ss_pred HHHHHHHHCcCHHHHHHHhhcCccCCHHHHHHcCCccEEeec
Confidence 1122233342 334456667778999999999999999863
No 128
>PRK05654 acetyl-CoA carboxylase subunit beta; Validated
Probab=97.65 E-value=0.00092 Score=63.80 Aligned_cols=162 Identities=15% Similarity=0.156 Sum_probs=100.6
Q ss_pred eCCEEEEEEcCCC-CCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCchhHHHHHHHHhc-
Q psy9494 22 ILNITLISLNRPD-KINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTKLFDDFREFLQK- 99 (314)
Q Consensus 22 ~~~v~~itlnrp~-~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~- 99 (314)
++.-..|.-|.+. ...+++...-+.+..+++.+.+. .+-+|.+...|++ .+.+-.. +-... ......+.+
T Consensus 119 ~G~~V~v~a~D~~f~gGS~g~~~~eKi~r~~e~A~~~-~lPlV~l~dsgGa-----rmqEgi~-sL~~~-ak~~~a~~~~ 190 (292)
T PRK05654 119 EGMPVVLAVMDFSFMGGSMGSVVGEKIVRAVERAIEE-KCPLVIFSASGGA-----RMQEGLL-SLMQM-AKTSAALKRL 190 (292)
T ss_pred CCEEEEEEEEecccccCCccHHHHHHHHHHHHHHHHc-CCCEEEEEcCCCc-----chhhhhh-HHHhH-HHHHHHHHHH
Confidence 3433333334443 56789999999999999998876 5888888865533 2322000 00000 111111111
Q ss_pred -CCCCcEEEEEcCcccccccc-ccccCcEEEEeCCeEeeccccccccccccccccchhhhhccccccccccccccccccc
Q psy9494 100 -PAKKPIIAAITGYAVGQGLD-LALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRD 177 (314)
Q Consensus 100 -~~~kPvIAav~G~a~GgG~~-lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 177 (314)
....|.|+.+.|+|+||+.. .++.+|++||.++|.+++.-.++
T Consensus 191 ~~a~vP~IsVv~gpt~GG~aas~a~~~D~iia~p~A~ig~aGprv----------------------------------- 235 (292)
T PRK05654 191 SEAGLPYISVLTDPTTGGVSASFAMLGDIIIAEPKALIGFAGPRV----------------------------------- 235 (292)
T ss_pred HcCCCCEEEEEeCCCchHHHHHHHHcCCEEEEecCcEEEecCHHH-----------------------------------
Confidence 56899999999999999654 57789999999998766322211
Q ss_pred ccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHHhCC
Q psy9494 178 LAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLS 244 (314)
Q Consensus 178 ~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~ 244 (314)
+...++.. + .-+.-+++-+.+.|+||.|+++.++.....++.+.+...+
T Consensus 236 ------------ie~~~~e~----l--pe~~~~ae~~~~~G~vD~Vv~~~e~r~~l~~~L~~~~~~~ 284 (292)
T PRK05654 236 ------------IEQTVREK----L--PEGFQRAEFLLEHGAIDMIVHRRELRDTLASLLALHTKQP 284 (292)
T ss_pred ------------HHhhhhhh----h--hhhhcCHHHHHhCCCCcEEECHHHHHHHHHHHHHHHhcCC
Confidence 11111111 0 0012256777789999999999988888877777665543
No 129
>TIGR00515 accD acetyl-CoA carboxylase, carboxyl transferase, beta subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the beta chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=97.61 E-value=0.0015 Score=62.08 Aligned_cols=157 Identities=17% Similarity=0.184 Sum_probs=98.2
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCchhHHHHHHHHhc--CCC
Q psy9494 25 ITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTKLFDDFREFLQK--PAK 102 (314)
Q Consensus 25 v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~--~~~ 102 (314)
|+.+..|..-..-+++....+.+..+++.+.+. .+.+|.+...|++ -+.|-.. .-... ......+.+ ...
T Consensus 122 V~v~a~D~~f~gGSmg~~~geKi~r~~e~A~~~-~lPlV~l~dSgGa-----RmqEg~~-sL~~~-ak~~~~~~~~~~~~ 193 (285)
T TIGR00515 122 IVVAVFDFAFMGGSMGSVVGEKFVRAIEKALED-NCPLIIFSASGGA-----RMQEALL-SLMQM-AKTSAALAKMSERG 193 (285)
T ss_pred EEEEEEeccccCCCccHHHHHHHHHHHHHHHHc-CCCEEEEEcCCCc-----ccccchh-HHHhH-HHHHHHHHHHHcCC
Confidence 444444444456789999999999999998765 5888888876544 2222100 00000 111111111 568
Q ss_pred CcEEEEEcCcccccccc-ccccCcEEEEeCCeEeeccccccccccccccccchhhhhcccccccccccccccccccccCC
Q psy9494 103 KPIIAAITGYAVGQGLD-LALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIP 181 (314)
Q Consensus 103 kPvIAav~G~a~GgG~~-lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (314)
.|.|+.+.|+|+||+.. .++.+|++||.++|.+++.-.+
T Consensus 194 vP~IsVv~gpt~GG~aas~a~~~D~iia~p~A~ig~aGpr---------------------------------------- 233 (285)
T TIGR00515 194 LPYISVLTDPTTGGVSASFAMLGDLNIAEPKALIGFAGPR---------------------------------------- 233 (285)
T ss_pred CCEEEEEeCCcchHHHHHHHhCCCEEEEECCeEEEcCCHH----------------------------------------
Confidence 99999999999999644 6679999999999877632111
Q ss_pred CCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHHh
Q psy9494 182 TCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSK 242 (314)
Q Consensus 182 p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~ 242 (314)
.+.+.+|.. +.-+.-+|+-+.+.|+||.++++.++.+...++...+..
T Consensus 234 -------Vie~ti~e~------lpe~~q~ae~~~~~G~vD~iv~~~~~r~~l~~~L~~~~~ 281 (285)
T TIGR00515 234 -------VIEQTVREK------LPEGFQTSEFLLEHGAIDMIVHRPEMKKTLASLLAKLQN 281 (285)
T ss_pred -------HHHHHhcCc------cchhcCCHHHHHhCCCCcEEECcHHHHHHHHHHHHHHhh
Confidence 111112210 011122556677889999999998888877777765543
No 130
>TIGR03134 malonate_gamma malonate decarboxylase, gamma subunit. Members of this protein family are the gamma subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.
Probab=97.54 E-value=0.0042 Score=57.63 Aligned_cols=166 Identities=14% Similarity=0.116 Sum_probs=94.1
Q ss_pred CCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHh-hhCCCccEEEEEcCCCCccccCCcccccCCCCchhHHHHHHH---H-
Q psy9494 23 LNITLISLNRPDKINAINLKTLDALQENIKRF-EDDTESPLAILYGQEGNFCSGFDLHELDENPDTKLFDDFREF---L- 97 (314)
Q Consensus 23 ~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~-~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~---~- 97 (314)
+.-..|.=|+|.. .++.+-.......+... +++.++.+|.|.-.+++... ..=++.. ......++ +
T Consensus 31 G~~V~vIa~~~~~--~~g~~~~~k~A~~v~~~~d~~f~~PIv~lvDtpG~~~g-~~aE~~G------~~~a~A~l~~a~a 101 (238)
T TIGR03134 31 GGKVTVIGVVPDA--EVGLDEALALAQAVLDVIEADDKRPIVVLVDTPSQAYG-RREELLG------INQALAHLAKALA 101 (238)
T ss_pred CEEEEEEEECCCC--cCChHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCCCC-HHHHHHH------HHHHHHHHHHHHH
Confidence 3333333455553 78877777777778775 45577888877765433221 1111000 11111111 1
Q ss_pred hc-CCCCcEEEEEcCcccccccc-ccccCcEEEEeCCeEeeccccccccccccccccchhhhhccccccccccccccccc
Q psy9494 98 QK-PAKKPIIAAITGYAVGQGLD-LALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLS 175 (314)
Q Consensus 98 ~~-~~~kPvIAav~G~a~GgG~~-lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 175 (314)
.. ..+.|+|+.|-|.++|||+. +.+.+|.++|-+++.++ .
T Consensus 102 ~a~~~~vP~IsvI~g~a~ggg~lamg~~ad~v~Alp~A~i~-------v------------------------------- 143 (238)
T TIGR03134 102 LARLAGHPVIGLIYGKAISGAFLAHGLQADRIIALPGAMVH-------V------------------------------- 143 (238)
T ss_pred HhhcCCCCEEEEEeCCccHHHHHHHccCcCeEEEcCCcEEE-------e-------------------------------
Confidence 11 67899999999999998865 44458999998888765 1
Q ss_pred ccccCCCCchHHHHHHHHhhHHHHHHHHhcC--CCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHHh
Q psy9494 176 RDLAIPTCDVTIRRLGQMIGTSRTMDMISLG--RHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSK 242 (314)
Q Consensus 176 ~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G--~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~ 242 (314)
++|...+. .+-+-. .++.++.-.- -..+...+.+.|+||+++++.+-..-+.++++.++.
T Consensus 144 ----m~~e~aa~-I~~~~~--~~~~e~a~~~~~~a~~~~~~~~~G~vd~vi~~~~~~~~~~~~~~~~~~ 205 (238)
T TIGR03134 144 ----MDLESMAR-VTKRSV--EELEALAKSSPVFAPGIENFVKLGGVHALLDVADADAPAAQLAAVLAA 205 (238)
T ss_pred ----cCHHHHHH-HHccCH--hHHHHHHHhhhhhccCHHHHHhCCCccEEeCCCCcccHHHHHHHHHHh
Confidence 34333222 222212 2233332221 235677899999999999975543333455554443
No 131
>PRK14513 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=97.53 E-value=0.00055 Score=61.94 Aligned_cols=148 Identities=14% Similarity=0.211 Sum_probs=90.0
Q ss_pred CCCCHHHHHHHHHHHHHhhhCCCccEE--EEEcCCCCccccCCcccccCCCCchhHHHHHHHHhcCCCCcEEEEEcCccc
Q psy9494 37 NAINLKTLDALQENIKRFEDDTESPLA--ILYGQEGNFCSGFDLHELDENPDTKLFDDFREFLQKPAKKPIIAAITGYAV 114 (314)
Q Consensus 37 Nal~~~~~~eL~~al~~~~~d~~vr~v--Vltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~kPvIAav~G~a~ 114 (314)
..++.++-+.+...|-.++.++.-+-| -|-+.|+...+|. .+.+.++ ..+-||...+.|.|+
T Consensus 34 ~~i~~~~a~~ii~~Ll~L~~~~~~~~I~l~INSpGG~v~~Gl---------------aIyd~m~-~~~~~V~Ti~~G~Aa 97 (201)
T PRK14513 34 TPIESQMANTIVAQLLLLDSQNPEQEIQMYINCPGGEVYAGL---------------AIYDTMR-YIKAPVSTICVGIAM 97 (201)
T ss_pred CEEcHHHHHHHHHHHHHhhccCCCCCEEEEEECCCCchhhHH---------------HHHHHHH-hcCCCEEEEEEeeeh
Confidence 367888999998888888764333323 2334444333321 2333333 677789999999999
Q ss_pred cccccccccCcE--EEEeCCeEeeccccccccccccccccchhhhhcccccccccccccccccccccCC------CCchH
Q psy9494 115 GQGLDLALWCDL--RFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIP------TCDVT 186 (314)
Q Consensus 115 GgG~~lalacD~--~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~------p~~g~ 186 (314)
+.|.-+++++|- |++.++|++-+-....|. -| + ..|+.+- .....
T Consensus 98 S~As~il~aG~kgkR~~~pna~iMIHqp~~~~-------~G-------------------~-a~di~~~a~el~~~~~~l 150 (201)
T PRK14513 98 SMGSVLLMAGDKGKRMALPNSRIMIHQGSAGF-------RG-------------------N-TPDLEVQAKEVLFLRDTL 150 (201)
T ss_pred hhHHHHHhcCCCCcEEecCCeEEEEecCCCCC-------CC-------------------C-HHHHHHHHHHHHHHHHHH
Confidence 999999999996 899999987644433220 00 0 0000000 00001
Q ss_pred HHHHHHHhhH--HHHHHHHhcCCCCCHHHHHHCCCceeeeCCC
Q psy9494 187 IRRLGQMIGT--SRTMDMISLGRHITAREALDWGLCNKMVNCG 227 (314)
Q Consensus 187 ~~~l~~~vG~--~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~ 227 (314)
...+.+..|. ..-.+++-....+||+||+++||||+|+++.
T Consensus 151 ~~iya~~Tg~~~~~I~~~~~rd~~msa~EA~eyGliD~I~~~~ 193 (201)
T PRK14513 151 VDIYHRHTDLPHEKLLRDMERDYFMSPEEAKAYGLIDSVIEPT 193 (201)
T ss_pred HHHHHHHHCcCHHHHHHHhccCcccCHHHHHHcCCCcEEeccC
Confidence 1122233332 3344556666789999999999999999764
No 132
>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]
Probab=97.52 E-value=0.0015 Score=65.01 Aligned_cols=156 Identities=15% Similarity=0.213 Sum_probs=104.6
Q ss_pred EeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEE-cCCCCccccCCcccccCCCCchhHHHHHHHHhc
Q psy9494 21 KILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILY-GQEGNFCSGFDLHELDENPDTKLFDDFREFLQK 99 (314)
Q Consensus 21 ~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVlt-g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~ 99 (314)
-++.|..+.++ +.+++.+.+.+.++++.++++.. -++|+. ..++.+ .+.+.+..+.
T Consensus 24 ~~~~v~vi~i~-----g~I~~~s~~~l~r~l~~A~~~~a-~~vvl~ldTPGGl-----------------~~sm~~iv~~ 80 (436)
T COG1030 24 AEKKVYVIEID-----GAIDPASADYLQRALQSAEEENA-AAVVLELDTPGGL-----------------LDSMRQIVRA 80 (436)
T ss_pred cCCeEEEEEec-----CccCHHHHHHHHHHHHHHHhCCC-cEEEEEecCCCch-----------------HHHHHHHHHH
Confidence 35578888875 48899999999999999998753 344443 333222 2233333333
Q ss_pred --CCCCcEEEEEc---CccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhcccccccccccccccc
Q psy9494 100 --PAKKPIIAAIT---GYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNL 174 (314)
Q Consensus 100 --~~~kPvIAav~---G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 174 (314)
+.+.||+..|. +.|..+|..++++||+..+++.+.+|-...-.+- +-+
T Consensus 81 i~~s~vPV~~yv~p~ga~AaSAGtyI~m~~hiaaMAPgT~iGaa~Pi~~~----------------------g~~----- 133 (436)
T COG1030 81 ILNSPVPVIGYVVPDGARAASAGTYILMATHIAAMAPGTNIGAATPIAGG----------------------GTS----- 133 (436)
T ss_pred HHcCCCCEEEEEcCCCcchhchhhHHHHhcChhhhCCCCcccccceecCC----------------------CCC-----
Confidence 89999888883 4699999999999999999999988855544330 000
Q ss_pred cccccCCCCchHHHHHHHHhh--------HHHHHHHHhcCCCCCHHHHHHCCCceeeeCC-CchHH
Q psy9494 175 SRDLAIPTCDVTIRRLGQMIG--------TSRTMDMISLGRHITAREALDWGLCNKMVNC-GTAVG 231 (314)
Q Consensus 175 ~~~~~~~p~~g~~~~l~~~vG--------~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~-~~l~~ 231 (314)
..+..........+.+ ...|.+++.....++++||++.|++|-+..+ .|++.
T Consensus 134 -----~~~~~~~n~~~ay~~~~A~~~gRN~~~ae~~v~~~~~l~a~eA~~~~vid~iA~~~~ell~ 194 (436)
T COG1030 134 -----AKEANTTNAAVAYIRSLAEERGRNPTWAERFVTENLSLTAEEALRQGVIDLIARDLNELLK 194 (436)
T ss_pred -----ccchhhHHHHHHHHHHHHHHcCCChHHHHHHhhhccCCChhHHHhcCccccccCCHHHHHH
Confidence 1111112222233222 2347789999999999999999999987765 34433
No 133
>TIGR03133 malonate_beta malonate decarboxylase, beta subunit. Members of this protein family are the beta subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase.
Probab=97.47 E-value=0.0017 Score=61.38 Aligned_cols=107 Identities=16% Similarity=0.188 Sum_probs=68.5
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhC----CCccEEEEEcCCCCccccCCcccccCCCCchhHHHHHHHHhcC
Q psy9494 25 ITLISLNRPDKINAINLKTLDALQENIKRFEDD----TESPLAILYGQEGNFCSGFDLHELDENPDTKLFDDFREFLQKP 100 (314)
Q Consensus 25 v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d----~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~ 100 (314)
|..+..+.--..-++....-..+..+++.+.+| ..+.+|.+.-.|+. .+.+-.. .-....+-+......+
T Consensus 61 v~v~a~D~t~~GGS~G~~~g~Ki~r~~e~A~~~~~~~~~~PvV~l~dSgGa-----RlqEg~~-~L~~~a~i~~~~~~ls 134 (274)
T TIGR03133 61 VVVAAQEGRFQGGSVGEVHGAKIVGALRLAIEDNRKGQPTAVVLLLDTGGV-----RLQEANA-GLIAIAEIMRAILDAR 134 (274)
T ss_pred EEEEEECCCccCcCCCHHHHHHHHHHHHHHHhhhhccCCCCEEEEEcCCCc-----ChhhhHH-HHHHHHHHHHHHHHHh
Confidence 555555544455678888889999999998762 23457777654433 3332110 0000111122222223
Q ss_pred CCCcEEEEEcCc--cccccccccccCcEEEEeCCeEeec
Q psy9494 101 AKKPIIAAITGY--AVGQGLDLALWCDLRFVEENVLMGF 137 (314)
Q Consensus 101 ~~kPvIAav~G~--a~GgG~~lalacD~~ia~~~a~f~~ 137 (314)
-..|+|+.|.|+ |+||+...+..||++|+++++++++
T Consensus 135 ~~vP~Isvv~Gp~gc~GG~a~~a~l~D~vim~~~a~i~~ 173 (274)
T TIGR03133 135 AAVPVIGVIGGRVGCFGGMGIAAGLCSYLIMTEEGRLGL 173 (274)
T ss_pred CCCCEEEEEeCCCCcchHHHHHHhcCCEEEEeCCcEEec
Confidence 339999999999 8999999999999999999987653
No 134
>CHL00174 accD acetyl-CoA carboxylase beta subunit; Reviewed
Probab=97.24 E-value=0.0068 Score=57.92 Aligned_cols=106 Identities=15% Similarity=0.091 Sum_probs=70.0
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCchhHHH--HHHHHhcCCC
Q psy9494 25 ITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTKLFDD--FREFLQKPAK 102 (314)
Q Consensus 25 v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~--~~~~~~~~~~ 102 (314)
|+...++--=..-++....-+.+..+++.+.+. .+-+|++...|+ +.+.+-... -...... ....+...-.
T Consensus 135 v~v~a~Dftf~gGSmG~v~geKi~ra~e~A~~~-rlPlV~l~~SGG-----ARmQEg~~s-L~qmak~saa~~~~~~~~~ 207 (296)
T CHL00174 135 VALGVMDFQFMGGSMGSVVGEKITRLIEYATNE-SLPLIIVCASGG-----ARMQEGSLS-LMQMAKISSALYDYQSNKK 207 (296)
T ss_pred EEEEEECCcccccCcCHHHHHHHHHHHHHHHHc-CCCEEEEECCCC-----ccccccchh-hhhhHHHHHHHHHHHHcCC
Confidence 555555544456788888899999999998876 477888886553 334331100 0011111 1112222567
Q ss_pred CcEEEEEcCccccccccc-cccCcEEEEeCCeEeec
Q psy9494 103 KPIIAAITGYAVGQGLDL-ALWCDLRFVEENVLMGF 137 (314)
Q Consensus 103 kPvIAav~G~a~GgG~~l-alacD~~ia~~~a~f~~ 137 (314)
.|.|+.+.|+|.||+... ++.||++|+.++|.+++
T Consensus 208 vP~Isvl~gPt~GG~aas~a~l~Diiiae~~A~Igf 243 (296)
T CHL00174 208 LFYISILTSPTTGGVTASFGMLGDIIIAEPNAYIAF 243 (296)
T ss_pred CCEEEEEcCCCchHHHHHHHHcccEEEEeCCeEEEe
Confidence 999999999999998765 77799999988887663
No 135
>PRK07189 malonate decarboxylase subunit beta; Reviewed
Probab=97.23 E-value=0.0077 Score=57.71 Aligned_cols=107 Identities=17% Similarity=0.205 Sum_probs=71.6
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCC----CccEEEEEcCCCCccccCCcccccCCCCchhHHHHHHHHhcC
Q psy9494 25 ITLISLNRPDKINAINLKTLDALQENIKRFEDDT----ESPLAILYGQEGNFCSGFDLHELDENPDTKLFDDFREFLQKP 100 (314)
Q Consensus 25 v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~----~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~ 100 (314)
|..+..+.-=..-++.......+..+++.+.++. .+.+|.|.-.|+. .+.+-.. .-....+-+......+
T Consensus 70 v~v~a~D~tf~GGS~G~~~g~Ki~r~~e~A~~~~~~~~~~PvV~l~dSGGa-----RlqEg~~-~L~~~a~i~~~~~~ls 143 (301)
T PRK07189 70 VVVAAQEGRFMGGSVGEVHGAKLAGALELAAEDNRNGIPTAVLLLFETGGV-----RLQEANA-GLAAIAEIMRAIVDLR 143 (301)
T ss_pred EEEEEECCCccCcCcCHHHHHHHHHHHHHHHHhCCCCCCCCEEEEecCCCc-----CccchHH-HHHHHHHHHHHHHHHh
Confidence 5555555555667888888999999999998875 3677877765433 3332110 0000111122222223
Q ss_pred CCCcEEEEEcCc--cccccccccccCcEEEEeCCeEeec
Q psy9494 101 AKKPIIAAITGY--AVGQGLDLALWCDLRFVEENVLMGF 137 (314)
Q Consensus 101 ~~kPvIAav~G~--a~GgG~~lalacD~~ia~~~a~f~~ 137 (314)
-.+|+|+.|.|+ |+||+...+.+||++|+++++.+++
T Consensus 144 ~~VP~I~vv~G~~gc~GG~a~~a~l~D~iIm~~~a~igl 182 (301)
T PRK07189 144 AAVPVIGLIGGRVGCFGGMGIAAALCSYLIVSEEGRLGL 182 (301)
T ss_pred CCCCEEEEEcCCCCCcHHHHHHHhcCCEEEEECCcEEec
Confidence 339999999999 9999999999999999999987653
No 136
>COG0777 AccD Acetyl-CoA carboxylase beta subunit [Lipid metabolism]
Probab=97.19 E-value=0.0067 Score=57.08 Aligned_cols=159 Identities=18% Similarity=0.246 Sum_probs=102.5
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCchhHHHHHHHHhc--CCC
Q psy9494 25 ITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTKLFDDFREFLQK--PAK 102 (314)
Q Consensus 25 v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~--~~~ 102 (314)
++...++-.=-..++..-.=+.+..+++.+-++ .+.+|+++.+|++ -+.|-.- +--+ .......+.+ ...
T Consensus 124 vv~av~df~FmgGSmGsVvGeki~ra~E~A~e~-k~P~v~f~aSGGA-----RMQEg~l-SLMQ-MaktsaAl~~l~ea~ 195 (294)
T COG0777 124 VVLAVMDFAFMGGSMGSVVGEKITRAIERAIED-KLPLVLFSASGGA-----RMQEGIL-SLMQ-MAKTSAALKRLSEAG 195 (294)
T ss_pred EEEEEEeccccccchhHHHHHHHHHHHHHHHHh-CCCEEEEecCcch-----hHhHHHH-HHHH-HHHHHHHHHHHHhcC
Confidence 555555544344577777788899999998877 4899999987632 2221000 0000 0001111111 778
Q ss_pred CcEEEEEcCcccccc-ccccccCcEEEEeCCeEeeccccccccccccccccchhhhhcccccccccccccccccccccCC
Q psy9494 103 KPIIAAITGYAVGQG-LDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIP 181 (314)
Q Consensus 103 kPvIAav~G~a~GgG-~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (314)
.|.|+.+.+++.||= .++|+..|+.||.+.|.+||.-.++= -++.+++ +|
T Consensus 196 lpyIsVLt~PTtGGVsASfA~lGDi~iAEP~AlIGFAGpRVI-----------------------EQTire~------LP 246 (294)
T COG0777 196 LPYISVLTDPTTGGVSASFAMLGDIIIAEPGALIGFAGPRVI-----------------------EQTIREK------LP 246 (294)
T ss_pred CceEEEecCCCccchhHhHHhccCeeecCcccccccCcchhh-----------------------hhhhccc------CC
Confidence 999999999999884 56999999999999999887655532 1111122 33
Q ss_pred CCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHHhCC
Q psy9494 182 TCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLS 244 (314)
Q Consensus 182 p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~ 244 (314)
.+. =+++-.++-|+||.+|+..++......+...+...+
T Consensus 247 egf------------------------Q~aEfLlehG~iD~iv~R~elr~tla~ll~~~~~~~ 285 (294)
T COG0777 247 EGF------------------------QTAEFLLEHGMIDMIVHRDELRTTLASLLAKLTPQP 285 (294)
T ss_pred cch------------------------hhHHHHHHcCCceeeecHHHHHHHHHHHHHHhCCCC
Confidence 221 146667899999999999888777777776665543
No 137
>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit. This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.
Probab=97.07 E-value=0.012 Score=60.29 Aligned_cols=99 Identities=16% Similarity=0.200 Sum_probs=66.1
Q ss_pred EcCCC-CCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCchhHHHHHHHHhc--CCCCcEE
Q psy9494 30 LNRPD-KINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTKLFDDFREFLQK--PAKKPII 106 (314)
Q Consensus 30 lnrp~-~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~--~~~kPvI 106 (314)
=|+|. ...+++.+..+...+.++.+.+. .+-+|.|.-.++ |..|.+-.. ........+.+.. ....|.|
T Consensus 321 And~~~~~G~~~~~~~~K~~r~i~~a~~~-~lPlV~lvDs~G-~~~g~~~E~------~g~~~~~a~~~~a~~~~~vP~i 392 (512)
T TIGR01117 321 ANQPKVMAGCLDIDSSDKIARFIRFCDAF-NIPIVTFVDVPG-FLPGVNQEY------GGIIRHGAKVLYAYSEATVPKV 392 (512)
T ss_pred EeccccccCCCCHHHHHHHHHHHHHHHHc-CCCEEEEEeCcC-ccccHHHHH------HHHHHHHHHHHHHHHhCCCCEE
Confidence 34443 44579999999999999988764 678888776554 444432110 0011122222222 7899999
Q ss_pred EEEcCccccccccccc----cCcEEEEeCCeEee
Q psy9494 107 AAITGYAVGQGLDLAL----WCDLRFVEENVLMG 136 (314)
Q Consensus 107 Aav~G~a~GgG~~lal----acD~~ia~~~a~f~ 136 (314)
+.|.|.++|||+..+. .+|+++|.+++.++
T Consensus 393 svi~g~~~Gga~~am~~~~~~~d~~~a~p~a~~~ 426 (512)
T TIGR01117 393 TIITRKAYGGAYLAMCSKHLGADQVYAWPTAEIA 426 (512)
T ss_pred EEEcCCCchHHHHHhccccCCCCEEEEcCCCeEe
Confidence 9999999988765443 39999999998876
No 138
>COG0740 ClpP Protease subunit of ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=97.05 E-value=0.0027 Score=57.38 Aligned_cols=84 Identities=18% Similarity=0.207 Sum_probs=56.5
Q ss_pred CHHHHHHHHHHHHHhhhCCCccEEEEE--cCCCCccccCCcccccCCCCchhHHHHHHHHhcCCCCcEEEEEcCcccccc
Q psy9494 40 NLKTLDALQENIKRFEDDTESPLAILY--GQEGNFCSGFDLHELDENPDTKLFDDFREFLQKPAKKPIIAAITGYAVGQG 117 (314)
Q Consensus 40 ~~~~~~eL~~al~~~~~d~~vr~vVlt--g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~kPvIAav~G~a~GgG 117 (314)
+..+...+..-+-.++.++..+-|.|. +.|+...+|.-+ .+.++ ..+.||...+.|.|.+.|
T Consensus 37 ~~~~a~~i~aqll~Lea~~~~k~I~lyINSpGG~V~aG~AI---------------ydtm~-~ik~~V~ti~~G~AaSmg 100 (200)
T COG0740 37 EDHMANLIVAQLLFLEAEDPDKDIYLYINSPGGSVTAGLAI---------------YDTMQ-FIKPPVSTICMGQAASMG 100 (200)
T ss_pred chHHHHHHHHHHHHHHhcCCCCCeEEEEeCCCcccchhHHH---------------HHHHH-hcCCCeEEEEecHHHhHH
Confidence 334555555555555554444444443 666666666433 22233 688999999999999999
Q ss_pred ccccccCcEE--EEeCCeEeeccc
Q psy9494 118 LDLALWCDLR--FVEENVLMGFYN 139 (314)
Q Consensus 118 ~~lalacD~~--ia~~~a~f~~pe 139 (314)
.-|++++|-. ++.++|++-.-.
T Consensus 101 s~l~~aG~~g~r~~lPnsrimIHq 124 (200)
T COG0740 101 SVLLMAGDKGKRFALPNARIMIHQ 124 (200)
T ss_pred HHHHhcCCCCCceeCCCceEEEec
Confidence 9999999985 888888765433
No 139
>PRK12552 ATP-dependent Clp protease-like protein; Reviewed
Probab=96.89 E-value=0.023 Score=52.21 Aligned_cols=96 Identities=10% Similarity=0.056 Sum_probs=61.0
Q ss_pred CCCHHHHHHHHHHHHHhhhCCCccEEEE--EcCCCCccccCCcccccCCCCchhHHHHHHHHhcCCCCcEEEEEcCcccc
Q psy9494 38 AINLKTLDALQENIKRFEDDTESPLAIL--YGQEGNFCSGFDLHELDENPDTKLFDDFREFLQKPAKKPIIAAITGYAVG 115 (314)
Q Consensus 38 al~~~~~~eL~~al~~~~~d~~vr~vVl--tg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~kPvIAav~G~a~G 115 (314)
..+.++.+.+...|-.++.++..+-|-+ -+.|+...+|-=+....+ .-.+.+.++ ..+-||...+-|.|++
T Consensus 48 ~~~~~~a~~iiaqLl~L~~~~~~k~I~lyINSpGGsv~~G~~iG~v~~------glaIyD~m~-~ik~~V~Tv~~G~AaS 120 (222)
T PRK12552 48 QVGMDVTELIIAQLLYLEFDDPEKPIYFYINSTGTSWYTGDAIGFETE------AFAICDTMR-YIKPPVHTICIGQAMG 120 (222)
T ss_pred chhHhHHHHHHHHHHHHhccCCCCCEEEEEeCCCCCcccccccccccc------HHHHHHHHH-hcCCCeEEEEEeehhh
Confidence 4455588888888888876543333333 355666555511111100 112333333 5666788999999999
Q ss_pred ccccccccCcE--EEEeCCeEeecccc
Q psy9494 116 QGLDLALWCDL--RFVEENVLMGFYNR 140 (314)
Q Consensus 116 gG~~lalacD~--~ia~~~a~f~~pe~ 140 (314)
.+.-+++++|- |++-+++++-+-..
T Consensus 121 ~AslIl~aG~kg~R~alpns~iMIHqP 147 (222)
T PRK12552 121 TAAMILSAGTKGQRASLPHATIVLHQP 147 (222)
T ss_pred HHHHHHhCCCCCceecCCCcEEEeccC
Confidence 99999999995 88989988764443
No 140
>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]. The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....
Probab=96.87 E-value=0.0098 Score=60.68 Aligned_cols=107 Identities=19% Similarity=0.186 Sum_probs=67.7
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCchhHHHHHHHHhcCCCCc
Q psy9494 25 ITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTKLFDDFREFLQKPAKKP 104 (314)
Q Consensus 25 v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~kP 104 (314)
|.++..+.--...++.......+..+++.+.++ .+.+|.|.-.|+.+ + ++.+-.... .....-+.......-..|
T Consensus 59 v~v~a~D~t~~gGs~g~~~~~Ki~ra~~~A~~~-~~P~v~l~dsgGa~--~-r~~eg~~~l-~~~g~i~~~~~~~~~~iP 133 (493)
T PF01039_consen 59 VVVIAQDFTVLGGSVGEVHGEKIARAIELALEN-GLPLVYLVDSGGAF--L-RMQEGVESL-MGMGRIFRAIARLSGGIP 133 (493)
T ss_dssp EEEEEEETTSGGGTBSHHHHHHHHHHHHHHHHH-TEEEEEEEEESSBC--G-GGGGHHHHH-HHHHHHHHHHHHHHTTS-
T ss_pred EEEEEeccceecCCCCcccceeeehHHHHHHHc-CCCcEEeccccccc--c-ccchhhhhh-hhhHHHHHHHHHHhcCCC
Confidence 343444444456789999999999999999887 46667666433221 1 333221100 000111111111133999
Q ss_pred EEEEEcCccccccccccccCcEEEEeCC-eEee
Q psy9494 105 IIAAITGYAVGQGLDLALWCDLRFVEEN-VLMG 136 (314)
Q Consensus 105 vIAav~G~a~GgG~~lalacD~~ia~~~-a~f~ 136 (314)
+|+++.|+|.|||..++..||++|+.++ +.++
T Consensus 134 ~I~vv~G~~~Gg~A~~~~~~d~~i~~~~~a~i~ 166 (493)
T PF01039_consen 134 QISVVTGPCTGGGAYLAALSDFVIMVKGTARIF 166 (493)
T ss_dssp EEEEEESEEEGGGGHHHHHSSEEEEETTTCEEE
T ss_pred eEEEEccccccchhhcccccCccccCccceEEE
Confidence 9999999999999999999999999997 7654
No 141
>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit. This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.
Probab=96.86 E-value=0.017 Score=59.26 Aligned_cols=102 Identities=14% Similarity=0.088 Sum_probs=65.9
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCchhHHHHHHHHhcCCCCc
Q psy9494 25 ITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTKLFDDFREFLQKPAKKP 104 (314)
Q Consensus 25 v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~kP 104 (314)
|..+..+.-=+.-+++......+..+++.+.++. +-+|.|.-.|+. .+.+-... -......+.......-..|
T Consensus 84 v~v~a~D~t~~gGS~g~~~~~K~~r~~e~A~~~~-lPlV~l~dSgGa-----rm~eg~~~-l~~~~~~~~~~~~~s~~iP 156 (512)
T TIGR01117 84 VYAFAQDFTVMGGSLGEMHAAKIVKIMDLAMKMG-APVVGLNDSGGA-----RIQEAVDA-LKGYGDIFYRNTIASGVVP 156 (512)
T ss_pred EEEEEECCcccccCCCHHHHHHHHHHHHHHHHcC-CCEEEEecCCCC-----Cccccchh-hhhHHHHHHHHHHHcCCCc
Confidence 4444444333567888888999999999998764 677777754433 33221110 0011111212122244689
Q ss_pred EEEEEcCccccccccccccCcEEEEeCCe
Q psy9494 105 IIAAITGYAVGQGLDLALWCDLRFVEENV 133 (314)
Q Consensus 105 vIAav~G~a~GgG~~lalacD~~ia~~~a 133 (314)
.|++|.|+|.||+......||++|+.+++
T Consensus 157 ~Isvv~G~~~GG~a~~~al~D~vim~~~~ 185 (512)
T TIGR01117 157 QISAIMGPCAGGAVYSPALTDFIYMVDNT 185 (512)
T ss_pred EEEEEecCCCcHHHHHHHhcCceEEeccc
Confidence 99999999999998887899999999964
No 142
>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain
Probab=95.88 E-value=0.12 Score=53.69 Aligned_cols=107 Identities=12% Similarity=0.043 Sum_probs=68.1
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCchhHHHHHHHHhc-CCCC
Q psy9494 25 ITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTKLFDDFREFLQK-PAKK 103 (314)
Q Consensus 25 v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~-~~~k 103 (314)
|+.+.-+.-=+..+++....+.+..+++.+.+. .+.+|.|.-.|+++-.+ ....+.. ......-+...... ....
T Consensus 131 V~v~a~D~tv~GGs~g~~~~~Ki~r~~elA~~~-~lPlV~l~DSgGarl~~-q~e~~~~--~~~~g~if~~~~~ls~~~V 206 (569)
T PLN02820 131 CMFVANDPTVKGGTYYPITVKKHLRAQEIAAQC-RLPCIYLVDSGGANLPR-QAEVFPD--RDHFGRIFYNQARMSSAGI 206 (569)
T ss_pred EEEEEECCCccCCCCCHHHHHHHHHHHHHHHHc-CCCEEEEEeCCCcCCcc-cccccch--HhHHHHHHHHHHHHhCCCC
Confidence 444444433366899999999999999998876 57788877655443211 0000000 00011111122221 4679
Q ss_pred cEEEEEcCccccccccccccCcEEEEeCC-eEe
Q psy9494 104 PIIAAITGYAVGQGLDLALWCDLRFVEEN-VLM 135 (314)
Q Consensus 104 PvIAav~G~a~GgG~~lalacD~~ia~~~-a~f 135 (314)
|.|++|.|+|.|||......||++|+++. +.+
T Consensus 207 P~Isvv~G~~~gGgAy~~a~~D~vim~~~~a~i 239 (569)
T PLN02820 207 PQIALVLGSCTAGGAYVPAMADESVIVKGNGTI 239 (569)
T ss_pred CEEEEEeCCCChHHHHHHHhCCceEEecCCcEE
Confidence 99999999999999999999999999875 544
No 143
>COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism]
Probab=94.98 E-value=0.031 Score=53.09 Aligned_cols=81 Identities=20% Similarity=0.177 Sum_probs=62.9
Q ss_pred CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhccccccccccccccccccccc
Q psy9494 100 PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLA 179 (314)
Q Consensus 100 ~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (314)
+++.|+|+.|=|-.-+||.--...+|.+.+-++++++ .
T Consensus 186 ~LkvPiI~iVIGEGgSGGALAi~vad~V~mle~s~yS------V------------------------------------ 223 (317)
T COG0825 186 RLKVPIISIVIGEGGSGGALAIGVADRVLMLENSTYS------V------------------------------------ 223 (317)
T ss_pred CCCCCEEEEEecCCCchhhHHhhHHHHHHHHHhceee------e------------------------------------
Confidence 8999999999999888887666778999999998876 1
Q ss_pred CCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCC
Q psy9494 180 IPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNC 226 (314)
Q Consensus 180 ~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~ 226 (314)
++|.+.++.++-. ..+|.+. ...-+++|++.+++|+||.|+|.
T Consensus 224 isPEG~AsILWkD---~~ka~eA-Ae~mkita~dLk~lgiID~II~E 266 (317)
T COG0825 224 ISPEGCASILWKD---ASKAKEA-AEAMKITAHDLKELGIIDGIIPE 266 (317)
T ss_pred cChhhhhhhhhcC---hhhhHHH-HHHcCCCHHHHHhCCCcceeccC
Confidence 6776666555443 2444443 34457999999999999999984
No 144
>COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]
Probab=94.71 E-value=0.3 Score=50.17 Aligned_cols=102 Identities=13% Similarity=0.067 Sum_probs=63.7
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCchhHHHHHHHHhcCCCCc
Q psy9494 25 ITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTKLFDDFREFLQKPAKKP 104 (314)
Q Consensus 25 v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~kP 104 (314)
+....-+.+-+.-++..-....+..+.+.+.++. .-+|.|.- |.|+.+.+-...... ...-+.......--.|
T Consensus 93 ~~v~a~D~TV~gGt~~~~~~~Ki~r~~~~A~~~g-~P~i~l~d-----sgGari~~~v~~l~g-~g~iF~~~a~~Sg~IP 165 (526)
T COG4799 93 VFVFANDFTVKGGTLGEMTAKKILRAQELAIENG-LPVIGLND-----SGGARIQEGVPSLAG-YGRIFYRNARASGVIP 165 (526)
T ss_pred EEEEEecCceecccccccccchHHHHHHHHHHcC-CCEEEEEc-----ccccccccCcccccc-chHHHHHHHHhccCCC
Confidence 3333334555777888878888888888888764 44454443 223333321110000 0111111112233499
Q ss_pred EEEEEcCccccccccccccCcEEEEeCCe
Q psy9494 105 IIAAITGYAVGQGLDLALWCDLRFVEENV 133 (314)
Q Consensus 105 vIAav~G~a~GgG~~lalacD~~ia~~~a 133 (314)
.|++|.|.|+|||..+...||++|+.++.
T Consensus 166 qIsvv~G~c~gGgaY~pal~D~~imv~~~ 194 (526)
T COG4799 166 QISVVMGPCAGGGAYSPALTDFVIMVRDQ 194 (526)
T ss_pred EEEEEEecCcccccccccccceEEEEcCC
Confidence 99999999999999999999999999983
No 145
>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain
Probab=92.16 E-value=4 Score=42.64 Aligned_cols=92 Identities=20% Similarity=0.137 Sum_probs=61.9
Q ss_pred CCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCchhHHHHHHHHhc--CCCCcEEEEEcCccc
Q psy9494 37 NAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTKLFDDFREFLQK--PAKKPIIAAITGYAV 114 (314)
Q Consensus 37 Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~--~~~kPvIAav~G~a~ 114 (314)
-+++.+..+...+.++.+.. -.+-+|-|.-.++ |..|.+-..- .......+++.. ....|.|+.|-|.++
T Consensus 380 g~l~~~~a~Kaarfi~lc~~-~~iPlv~l~D~pG-f~~G~~~E~~------G~~~~~a~l~~A~a~~~VP~isvi~g~a~ 451 (569)
T PLN02820 380 GILFTESALKGAHFIELCAQ-RGIPLLFLQNITG-FMVGSRSEAS------GIAKAGAKMVMAVACAKVPKITIIVGGSF 451 (569)
T ss_pred CccCHHHHHHHHHHHHHHHh-cCCCEEEEEECCC-CCCCHHHHHh------hHHHHHHHHHHHHHhCCCCEEEEEECCcc
Confidence 46888888888888887775 4688887775543 4444333220 012222333332 789999999999999
Q ss_pred cccccccc----cCcEEEEeCCeEee
Q psy9494 115 GQGLDLAL----WCDLRFVEENVLMG 136 (314)
Q Consensus 115 GgG~~lal----acD~~ia~~~a~f~ 136 (314)
|+|+..+. ..|+++|.++|.++
T Consensus 452 G~g~~aM~g~~~~~d~~~awp~A~i~ 477 (569)
T PLN02820 452 GAGNYGMCGRAYSPNFLFMWPNARIG 477 (569)
T ss_pred hHHHHHhcCcCCCCCEEEECCCCeEE
Confidence 98765543 67888888888765
No 146
>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]. The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....
Probab=92.08 E-value=0.56 Score=47.94 Aligned_cols=101 Identities=20% Similarity=0.202 Sum_probs=59.7
Q ss_pred EEEcCCCCC-CCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCchhHHHHHHHHhc--CCCCc
Q psy9494 28 ISLNRPDKI-NAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTKLFDDFREFLQK--PAKKP 104 (314)
Q Consensus 28 itlnrp~~~-Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~--~~~kP 104 (314)
|.=|+|... -+++.+..+...+.++.++. -.+-+|.|.-.. .|..|.+-.. ........+.+.. .++.|
T Consensus 298 iian~~~~~~G~~~~~~a~K~arfi~lcd~-~~iPlv~l~dtp-Gf~~g~~~E~------~g~~~~ga~~~~a~~~~~vP 369 (493)
T PF01039_consen 298 IIANNPRQRAGALDPDGARKAARFIRLCDA-FNIPLVTLVDTP-GFMPGPEAER------AGIIRAGARLLYALAEATVP 369 (493)
T ss_dssp EEEE-TTCGGGEB-HHHHHHHHHHHHHHHH-TT--EEEEEEEC-EB--SHHHHH------TTHHHHHHHHHHHHHHH-S-
T ss_pred EEEeccccccccCChHHHHHHHHHHHHHHh-hCCceEEEeecc-cccccchhhh------cchHHHHHHHHHHHHcCCCC
Confidence 334666432 26999999999999988887 468888887543 2333322111 0011112222222 78999
Q ss_pred EEEEEcCccccccccccccC----cEEEEeCCeEee
Q psy9494 105 IIAAITGYAVGQGLDLALWC----DLRFVEENVLMG 136 (314)
Q Consensus 105 vIAav~G~a~GgG~~lalac----D~~ia~~~a~f~ 136 (314)
+|..|-|.+.|||+...... |+++|.+++.++
T Consensus 370 ~itvi~~~~~Gga~~am~~~~~~~~~~~Awp~a~~~ 405 (493)
T PF01039_consen 370 KITVIVRKAYGGAYYAMCGRGYGPDFVFAWPTAEIG 405 (493)
T ss_dssp EEEEEEEEEEHHHHHHTTGGGGTTSEEEEETT-EEE
T ss_pred EEEEEeCCccCcchhhhcccccchhhhhhhhcceee
Confidence 99999999999887655555 899988888776
No 147
>COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]
Probab=81.84 E-value=24 Score=36.64 Aligned_cols=101 Identities=22% Similarity=0.228 Sum_probs=62.7
Q ss_pred EEEcCCC-CCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCchhHHHHHHHHhc--CCCCc
Q psy9494 28 ISLNRPD-KINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTKLFDDFREFLQK--PAKKP 104 (314)
Q Consensus 28 itlnrp~-~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~--~~~kP 104 (314)
|.=|.|. ..-+|+.+....-.+.+ ++.+-.++-.|.|.-.. .|.-|-|-..-. ..+.-..++.. ...+|
T Consensus 328 iIANqp~~~~G~l~~~sa~KaArFI-~~cd~~~iPlv~L~d~p-GFm~G~~~E~~g------iik~Gakl~~A~aeatVP 399 (526)
T COG4799 328 IIANQPRHLGGVLDIDSADKAARFI-RLCDAFNIPLVFLVDTP-GFMPGTDQEYGG------IIKHGAKLLYAVAEATVP 399 (526)
T ss_pred EEecCccccccccchHHHHHHHHHH-HhhhccCCCeEEEeCCC-CCCCChhHHhCh------HHHhhhHHHhhHhhccCC
Confidence 3346654 45688988888888888 55555578888777543 577776543211 11111112222 78899
Q ss_pred EEEEEcCccccccccccc----cCcEEEEeCCeEee
Q psy9494 105 IIAAITGYAVGQGLDLAL----WCDLRFVEENVLMG 136 (314)
Q Consensus 105 vIAav~G~a~GgG~~lal----acD~~ia~~~a~f~ 136 (314)
.|..|-|-++|||+..+. .+|+.+|.+++.++
T Consensus 400 kitvI~rkayGga~~~M~~~~~~~~~~~AwP~a~ia 435 (526)
T COG4799 400 KITVITRKAYGGAYYVMGGKALGPDFNYAWPTAEIA 435 (526)
T ss_pred eEEEEecccccceeeeecCccCCCceeEecCcceee
Confidence 999999999999986544 35555555555443
No 148
>KOG0840|consensus
Probab=78.73 E-value=5.6 Score=37.48 Aligned_cols=86 Identities=14% Similarity=0.177 Sum_probs=52.2
Q ss_pred CCCCHHHHHHHHHHHHHhhhCCCccEEEEE--cCCCCccccCCcccccCCCCchhHHHHHHHHhcCCCCcEEEEEcCccc
Q psy9494 37 NAINLKTLDALQENIKRFEDDTESPLAILY--GQEGNFCSGFDLHELDENPDTKLFDDFREFLQKPAKKPIIAAITGYAV 114 (314)
Q Consensus 37 Nal~~~~~~eL~~al~~~~~d~~vr~vVlt--g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~kPvIAav~G~a~ 114 (314)
-.++.++-+.+...|-.+..+++-|=|.+. +.|+.-.+|.-+ .+..+ .++-||-..+-|.|+
T Consensus 99 ~~Idd~va~~viaqlL~Ld~ed~~K~I~lyINSPGG~vtaglAI---------------YDtMq-~ik~~V~Tic~G~Aa 162 (275)
T KOG0840|consen 99 QPIDDDVANLVIAQLLYLDSEDPKKPIYLYINSPGGSVTAGLAI---------------YDTMQ-YIKPDVSTICVGLAA 162 (275)
T ss_pred CcCcHHHHHHHHHHHHHhhccCCCCCeEEEEeCCCCccchhhhH---------------HHHHH-hhCCCceeeehhhHH
Confidence 357888888888888888877777777666 444444443322 12222 344455555568887
Q ss_pred cccccccccCcEEEEeCCeEeeccccccc
Q psy9494 115 GQGLDLALWCDLRFVEENVLMGFYNRRFV 143 (314)
Q Consensus 115 GgG~~lalacD~~ia~~~a~f~~pe~~~G 143 (314)
+-|..|..+ .+.+-++++|..++=
T Consensus 163 s~aalLLaa-----G~KG~R~alPnsriM 186 (275)
T KOG0840|consen 163 SMAALLLAA-----GAKGKRYALPNSRIM 186 (275)
T ss_pred hHHHHHHhc-----CCCcceeecCCceeE
Confidence 766554433 244556777777655
No 149
>COG0074 SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
Probab=76.33 E-value=6.9 Score=37.41 Aligned_cols=52 Identities=25% Similarity=0.534 Sum_probs=36.1
Q ss_pred HHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCchhHHHHHHHHhc-CCCCcEEEEEcCccc
Q psy9494 47 LQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTKLFDDFREFLQK-PAKKPIIAAITGYAV 114 (314)
Q Consensus 47 L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~-~~~kPvIAav~G~a~ 114 (314)
+.++|+.+++||+.++||+-|.-+ . . ......+++.+ ...|||||.+-|.+.
T Consensus 188 fid~L~~fe~Dp~T~~ivmiGEiG-----G--------~---aEe~AA~~i~~~~~~KPVVa~iaG~ta 240 (293)
T COG0074 188 FIDALEMFEADPETEAIVMIGEIG-----G--------P---AEEEAAEYIKANATRKPVVAYIAGRTA 240 (293)
T ss_pred HHHHHHHHhcCccccEEEEEecCC-----C--------c---HHHHHHHHHHHhccCCCEEEEEeccCC
Confidence 347899999999999999999720 0 0 11223334443 445999999999876
No 150
>PLN02522 ATP citrate (pro-S)-lyase
Probab=72.28 E-value=10 Score=39.97 Aligned_cols=67 Identities=16% Similarity=0.245 Sum_probs=44.2
Q ss_pred HHHHHHHhhhCCCccEEEEEcC-CCCccccCCcccccCCCCchhHHHHHHHHhc-CCCCcEEEEEcCccccc-ccccccc
Q psy9494 47 LQENIKRFEDDTESPLAILYGQ-EGNFCSGFDLHELDENPDTKLFDDFREFLQK-PAKKPIIAAITGYAVGQ-GLDLALW 123 (314)
Q Consensus 47 L~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~-~~~kPvIAav~G~a~Gg-G~~lala 123 (314)
+.+.|+.+++||++++|++.++ |.. ....+.+...+ +..||||+.+-|.+..+ +-..++.
T Consensus 210 ~~D~L~~~~~Dp~Tk~IvlygEiGg~-----------------~e~~f~ea~~~a~~~KPVVa~kaGrsa~~~~~~aa~g 272 (608)
T PLN02522 210 LSDHVLRFNNIPQIKMIVVLGELGGR-----------------DEYSLVEALKQGKVSKPVVAWVSGTCARLFKSEVQFG 272 (608)
T ss_pred HHHHHHHHhcCCCCCEEEEEEecCch-----------------hHHHHHHHHHHhcCCCCEEEEeccCCCccCccccccc
Confidence 5677888999999999999987 511 12334444444 57899999999998732 3334444
Q ss_pred CcEEEEe
Q psy9494 124 CDLRFVE 130 (314)
Q Consensus 124 cD~~ia~ 130 (314)
.--.+++
T Consensus 273 HtGAiag 279 (608)
T PLN02522 273 HAGAKSG 279 (608)
T ss_pred ccccccc
Confidence 4344443
No 151
>KOG0540|consensus
Probab=70.15 E-value=77 Score=32.46 Aligned_cols=103 Identities=19% Similarity=0.135 Sum_probs=65.1
Q ss_pred EEEcCCC-CCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCchhHHHHHHHHhcCCCCcEE
Q psy9494 28 ISLNRPD-KINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTKLFDDFREFLQKPAKKPII 106 (314)
Q Consensus 28 itlnrp~-~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~kPvI 106 (314)
|.-|+|+ ....|..+.-......++... ...+..|.|...++ |-.|.+.....-... ...+...+. ..++|-|
T Consensus 353 Ivgnn~kf~~G~L~s~sa~KgarfIe~c~-q~~IPLi~l~ni~G-fm~g~~~e~~gIaK~---gAklv~a~a-~akvpkI 426 (536)
T KOG0540|consen 353 IVGNNPKFAGGVLFSESAVKGARFIELCD-QRNIPLIFLQNITG-FMVGRAAEAGGIAKH---GAKLVYAVA-CAKVPKI 426 (536)
T ss_pred EeccCchhcccccchhhhhhhHHHHHHHH-hcCCcEEEEEccCC-ccccchhhhhchhhh---hhhhhhhhh-hccCceE
Confidence 3446665 234566666555555555444 45788888887765 888888754332111 011111111 6788889
Q ss_pred EEEcCcccccccc---ccccCcEEEEeCCeEee
Q psy9494 107 AAITGYAVGQGLD---LALWCDLRFVEENVLMG 136 (314)
Q Consensus 107 Aav~G~a~GgG~~---lalacD~~ia~~~a~f~ 136 (314)
..+.|.+.||-+. -++.-|+.+|.++|+++
T Consensus 427 Tiit~~syGG~y~m~sr~~~gd~~yawP~A~Ia 459 (536)
T KOG0540|consen 427 TIITGGSYGGNYAMCSRGYSGDINYAWPNARIA 459 (536)
T ss_pred EEEecCccCCcccccccccCCceeEEcccceee
Confidence 9999999997665 45678999888888765
No 152
>PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional
Probab=67.59 E-value=15 Score=35.66 Aligned_cols=52 Identities=29% Similarity=0.524 Sum_probs=35.4
Q ss_pred HHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCchhHHHHHHHHhc-CCCCcEEEEEcCccc
Q psy9494 47 LQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTKLFDDFREFLQK-PAKKPIIAAITGYAV 114 (314)
Q Consensus 47 L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~-~~~kPvIAav~G~a~ 114 (314)
+.+.|+.+++||+.++|++.+++... . ..+..+++.. ...||||+.+-|...
T Consensus 212 ~~D~L~~~~~Dp~T~~Ivl~~E~gG~--------------~--e~~aa~fi~~~~~~KPVVa~~aGrsa 264 (317)
T PTZ00187 212 FIDCLKLFLNDPETEGIILIGEIGGT--------------A--EEEAAEWIKNNPIKKPVVSFIAGITA 264 (317)
T ss_pred HHHHHHHHhhCCCccEEEEEEecCCc--------------h--hHHHHHHHHhhcCCCcEEEEEecCCC
Confidence 56778888899999999999874110 0 1122233332 468999999999885
No 153
>PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A.
Probab=67.15 E-value=14 Score=31.31 Aligned_cols=52 Identities=17% Similarity=0.362 Sum_probs=27.5
Q ss_pred HHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCchhHHHHHHHHhc-CCCCcEEEEEcCccc
Q psy9494 46 ALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTKLFDDFREFLQK-PAKKPIIAAITGYAV 114 (314)
Q Consensus 46 eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~-~~~kPvIAav~G~a~ 114 (314)
.+.+.++.+.+||++++|++.-++ + .+ .+.+.+...+ ...||||+..-|..-
T Consensus 41 ~~~d~l~~~~~D~~t~~I~ly~E~--~------------~d---~~~f~~~~~~a~~~KPVv~lk~Grt~ 93 (138)
T PF13607_consen 41 DFADLLEYLAEDPDTRVIVLYLEG--I------------GD---GRRFLEAARRAARRKPVVVLKAGRTE 93 (138)
T ss_dssp -HHHHHHHHCT-SS--EEEEEES----------------S----HHHHHHHHHHHCCCS-EEEEE-----
T ss_pred CHHHHHHHHhcCCCCCEEEEEccC--C------------CC---HHHHHHHHHHHhcCCCEEEEeCCCch
Confidence 466778999999999999999764 0 11 1234444443 444999999999843
No 154
>PF00549 Ligase_CoA: CoA-ligase; InterPro: IPR005811 This entry represents a domain found in both the alpha and beta chains of succinyl-CoA synthase (6.2.1.4 from EC (GDP-forming) and 6.2.1.5 from EC (ADP-forming)) [, ]. This domain can also be found in ATP citrate synthase (2.3.3.8 from EC) and malate-CoA ligase (6.2.1.9 from EC). Some members of the domain utilise ATP others use GTP.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3DMY_B 3MWE_B 3PFF_A 3MWD_B 2YV1_A 1EUC_A 2FP4_A 1EUD_A 2FPI_A 2FPG_A ....
Probab=57.36 E-value=21 Score=30.96 Aligned_cols=58 Identities=16% Similarity=0.153 Sum_probs=37.1
Q ss_pred HHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCchhHHHHHHHHhc----CCCCcEEEEEcCcccc
Q psy9494 46 ALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTKLFDDFREFLQK----PAKKPIIAAITGYAVG 115 (314)
Q Consensus 46 eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~----~~~kPvIAav~G~a~G 115 (314)
...++|..+.+||++++|++-+.+++=+. ......+...+.. ..++|+|+.|.|-..-
T Consensus 60 ~~~~~l~~~~~Dp~v~vIlvd~~~G~g~~------------~~~A~~l~~a~~~~~~~~~~~pvVa~v~GT~~d 121 (153)
T PF00549_consen 60 TRNEALEIEAADPEVKVILVDIVGGIGSC------------EDPAAGLIPAIKEAKAEGRKKPVVARVCGTNAD 121 (153)
T ss_dssp HHHHHHHHHHTSTTESEEEEEEESSSSSH------------HHHHHHHHHHHSHCTHTTT-SEEEEEEESTTCH
T ss_pred HHHHHHHHHhcCCCccEEEEEeccccCch------------HHHHHHHHHHHHhccccCCCCcEEEEeeeecCC
Confidence 45566888889999999999876543222 1112233333332 3799999999987654
No 155
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=54.82 E-value=23 Score=33.80 Aligned_cols=79 Identities=15% Similarity=0.246 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHhhhCC---CccEEEEE-cCCCCccccCCcccccCCCCchhHHHHHHHHhcCCCCcEEEEEcCccccc
Q psy9494 41 LKTLDALQENIKRFEDDT---ESPLAILY-GQEGNFCSGFDLHELDENPDTKLFDDFREFLQKPAKKPIIAAITGYAVGQ 116 (314)
Q Consensus 41 ~~~~~eL~~al~~~~~d~---~vr~vVlt-g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~kPvIAav~G~a~Gg 116 (314)
.....++.++|+.+.... ++-+|||. |.| ++ -||-.|.+ ..+.+.+. .++.|||.+| ||-.--
T Consensus 54 ~~A~~~I~~al~~~~~~~~~~~~Dviii~RGGG-s~---eDL~~FN~-------e~varai~-~~~~PvisaI-GHe~D~ 120 (319)
T PF02601_consen 54 EGAAASIVSALRKANEMGQADDFDVIIIIRGGG-SI---EDLWAFND-------EEVARAIA-ASPIPVISAI-GHETDF 120 (319)
T ss_pred cchHHHHHHHHHHHHhccccccccEEEEecCCC-Ch---HHhcccCh-------HHHHHHHH-hCCCCEEEec-CCCCCc
Confidence 345778888898888764 56666665 543 22 13332221 11222222 8999999988 454432
Q ss_pred cccccccCcEEEEeCCe
Q psy9494 117 GLDLALWCDLRFVEENV 133 (314)
Q Consensus 117 G~~lalacD~~ia~~~a 133 (314)
.-.=+.+|.|..||++
T Consensus 121 -ti~D~vAd~ra~TPta 136 (319)
T PF02601_consen 121 -TIADFVADLRAPTPTA 136 (319)
T ss_pred -hHHHHHHHhhCCCHHH
Confidence 2233567777777764
No 156
>smart00250 PLEC Plectin repeat.
Probab=53.74 E-value=10 Score=24.74 Aligned_cols=18 Identities=33% Similarity=0.582 Sum_probs=17.0
Q ss_pred cCCCCCHHHHHHCCCcee
Q psy9494 205 LGRHITAREALDWGLCNK 222 (314)
Q Consensus 205 ~G~~~sA~eA~~~GLV~~ 222 (314)
+|+++|-.||.+.||++.
T Consensus 18 t~~~lsv~eA~~~glid~ 35 (38)
T smart00250 18 TGQKLSVEEALRRGLIDP 35 (38)
T ss_pred CCCCcCHHHHHHcCCCCc
Confidence 899999999999999985
No 157
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=50.11 E-value=40 Score=32.28 Aligned_cols=53 Identities=21% Similarity=0.503 Sum_probs=33.9
Q ss_pred HHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCchhHHHHHHHHhcCCCCcEEEEEcCccc
Q psy9494 46 ALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTKLFDDFREFLQKPAKKPIIAAITGYAV 114 (314)
Q Consensus 46 eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~kPvIAav~G~a~ 114 (314)
.+.+.|+.+.+||++++|++..++-. +. ..+..++......||||+..-|..-
T Consensus 187 ~~~D~l~~l~~Dp~T~~I~lylE~~~--------------~~--~~~a~~~~~~~~~KPVV~lk~Grs~ 239 (291)
T PRK05678 187 NFIDVLEAFEEDPETEAIVMIGEIGG--------------SA--EEEAAEYIKANVTKPVVGYIAGVTA 239 (291)
T ss_pred CHHHHHHHHhhCCCCcEEEEEEecCC--------------cH--HHHHHHHHHHcCCCCEEEEEecCCC
Confidence 45667888888888888888876310 00 0112222222358999999999865
No 158
>COG0793 Prc Periplasmic protease [Cell envelope biogenesis, outer membrane]
Probab=48.41 E-value=20 Score=35.82 Aligned_cols=92 Identities=12% Similarity=0.100 Sum_probs=60.0
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEE--EcC-CCCccccCCcccccCCCCch----hH-HHHHHH
Q psy9494 25 ITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAIL--YGQ-EGNFCSGFDLHELDENPDTK----LF-DDFREF 96 (314)
Q Consensus 25 v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVl--tg~-g~~F~aG~Dl~~~~~~~~~~----~~-~~~~~~ 96 (314)
|++|.+ +.|+....+++..++++++++. ++++|| +++ |+..+...++..+.-....- .. ......
T Consensus 205 IGyI~I------~~F~~~~~~~~~~al~~L~~~~-~~GlIlDLR~N~GG~L~~av~i~~~f~~~g~iv~~~~r~g~~~~~ 277 (406)
T COG0793 205 IGYIRI------PSFGEGTYEDLEKALDELKKQG-AKGLILDLRNNPGGLLSQAVKLAGLFLPSGPIVSTRGRNGKVNVY 277 (406)
T ss_pred EEEEEe------cccccchHHHHHHHHHHHHhcC-CcEEEEEeCCCCCccHHHHHHHHHcccCCCcEEEEecCCCceeec
Confidence 888887 5677788888999999999886 888887 466 46677777766544321110 00 000000
Q ss_pred Hhc----CCCCcEEEEEcCcccccccccccc
Q psy9494 97 LQK----PAKKPIIAAITGYAVGQGLDLALW 123 (314)
Q Consensus 97 ~~~----~~~kPvIAav~G~a~GgG~~lala 123 (314)
... ..++|+|..||+..+.++=-++.+
T Consensus 278 ~~~~~~~~~~~PlvvLvn~~SASAsEI~aga 308 (406)
T COG0793 278 FSASGEALYDGPLVVLVNEGSASASEIFAGA 308 (406)
T ss_pred cccccccCCCCCEEEEECCCCccHHHHHHHH
Confidence 111 347999999999998887545444
No 159
>KOG1255|consensus
Probab=45.99 E-value=43 Score=31.60 Aligned_cols=60 Identities=22% Similarity=0.400 Sum_probs=38.5
Q ss_pred HHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCchhHHHHHHHHhcCCCCcEEEEEcCccccccc
Q psy9494 47 LQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTKLFDDFREFLQKPAKKPIIAAITGYAVGQGL 118 (314)
Q Consensus 47 L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~kPvIAav~G~a~GgG~ 118 (314)
+.++|+.+-+|++.+.||+-|+=+ .....+..+.+.+.....-+|||++.|-|..+=-|-
T Consensus 219 FID~L~vFl~D~~t~GIiliGEIG------------G~AEe~AA~flk~~nSg~~~kPVvsFIAG~tAppGr 278 (329)
T KOG1255|consen 219 FIDCLEVFLEDPETEGIILIGEIG------------GSAEEEAAEFLKEYNSGSTAKPVVSFIAGVTAPPGR 278 (329)
T ss_pred HHHHHHHHhcCcccceEEEEeccC------------ChhhHHHHHHHHHhccCCCCCceeEEeecccCCCcc
Confidence 677888888999999999998621 011111122233332227899999999987764443
No 160
>PF00681 Plectin: Plectin repeat; InterPro: IPR001101 Plectin may have a role in cross-linking intermediate filaments, in inter-linking intermediate filaments with microtubules and microfilaments and in anchoring intermediate filaments to the plasma and nuclear membranes. Plectin is recruited into hemidesmosomes, multiprotein complexes that facilitate adhesion of epithelia to the basement membrane, thereby providing linkage between the intracellular keratin filaments to the laminins of the extracellular matrix. Plectin binds to hemidesmosomes through association of its actin-binding domain with the first pair of fibronectin type III repeats and a small part of the connecting segment of the integrin-beta4 subunit, the latter (integrin-alpha6,beta4) acting as a receptor for the extracellular matrix component laminin-5. The plectin repeat is also seen in the cell adhesion junction plaque proteins, desmoplakin, envoplakin, and bullous pemphigoid antigen. The domains in plakins show considerable sequence homology. The N terminus consists of a plakin domain containing a number of subdomains with high alpha-helical content, while the central coiled-coil domain is composed of heptad repeats involved in the dimerisation of plakin, and the C terminus contains one or more homologous repeat sequences referred to plectin repeats []. This entry represents the plectin repeats found in the C terminus of plakin proteins.; GO: 0005856 cytoskeleton; PDB: 1LM7_A 1LM5_A.
Probab=45.41 E-value=7.7 Score=26.37 Aligned_cols=19 Identities=26% Similarity=0.548 Sum_probs=16.3
Q ss_pred hcCCCCCHHHHHHCCCcee
Q psy9494 204 SLGRHITAREALDWGLCNK 222 (314)
Q Consensus 204 l~G~~~sA~eA~~~GLV~~ 222 (314)
-+|+++|-++|.+.||||.
T Consensus 17 ~tg~~lsv~~A~~~glId~ 35 (45)
T PF00681_consen 17 ETGERLSVEEAIQRGLIDS 35 (45)
T ss_dssp TTTEEEEHHHHHHTTSS-H
T ss_pred CCCeEEcHHHHHHCCCcCH
Confidence 4789999999999999984
No 161
>PLN00125 Succinyl-CoA ligase [GDP-forming] subunit alpha
Probab=44.63 E-value=50 Score=31.78 Aligned_cols=53 Identities=26% Similarity=0.521 Sum_probs=33.4
Q ss_pred HHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCchhHHHHHHHHhc-CCCCcEEEEEcCccc
Q psy9494 46 ALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTKLFDDFREFLQK-PAKKPIIAAITGYAV 114 (314)
Q Consensus 46 eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~-~~~kPvIAav~G~a~ 114 (314)
++.+.|+.+.+||++++|++..++. |.++ .+-.++++. ...||||+..-|...
T Consensus 192 ~~~d~L~yl~~Dp~T~~I~ly~E~~----G~~~------------~d~~~f~~aa~~~KPVV~lk~Grs~ 245 (300)
T PLN00125 192 NFVDCLEKFVKDPQTEGIILIGEIG----GTAE------------EDAAAFIKESGTEKPVVAFIAGLTA 245 (300)
T ss_pred CHHHHHHHHhhCCCCcEEEEEeccC----CchH------------HHHHHHHHHhcCCCCEEEEEecCCC
Confidence 3556788888888888888887641 0111 111222222 348999999999874
No 162
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=43.81 E-value=52 Score=31.37 Aligned_cols=53 Identities=23% Similarity=0.500 Sum_probs=34.2
Q ss_pred HHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCchhHHHHHHHHhcCCCCcEEEEEcCccc
Q psy9494 46 ALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTKLFDDFREFLQKPAKKPIIAAITGYAV 114 (314)
Q Consensus 46 eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~kPvIAav~G~a~ 114 (314)
++.+.|+.+.+||++++|++..++. .. . ..+..++......||||+..-|..-
T Consensus 185 ~~~D~l~~l~~Dp~T~~I~lylE~~--~~------------~--~~~~~~~~~~~~~KPVV~lk~Grs~ 237 (286)
T TIGR01019 185 SFIDVLEAFEKDPETEAIVMIGEIG--GS------------A--EEEAADFIKQNMSKPVVGFIAGATA 237 (286)
T ss_pred CHHHHHHHHhhCCCCcEEEEEEecC--Cc------------h--HHHHHHHHHhcCCCCEEEEEecCCC
Confidence 4567788888899999999887641 00 0 0112222222368999999998864
No 163
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=42.86 E-value=53 Score=33.09 Aligned_cols=81 Identities=20% Similarity=0.247 Sum_probs=47.4
Q ss_pred CHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCchhHHHHHHHHhcCCCCcEEEEEcCcccccccc
Q psy9494 40 NLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTKLFDDFREFLQKPAKKPIIAAITGYAVGQGLD 119 (314)
Q Consensus 40 ~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~kPvIAav~G~a~GgG~~ 119 (314)
......++.++++.+...+++-+|||.=.|+++ -||-.|.+ ..+.+.+. .++.|||.+| ||-.-- .-
T Consensus 168 G~~a~~~i~~al~~~~~~~~~dviii~RGGGs~---eDL~~Fn~-------e~~~rai~-~~~~Pvis~i-GHe~D~-ti 234 (432)
T TIGR00237 168 GEGAVQSIVESIELANTKNECDVLIVGRGGGSL---EDLWSFND-------EKVARAIF-LSKIPIISAV-GHETDF-TI 234 (432)
T ss_pred CccHHHHHHHHHHHhhcCCCCCEEEEecCCCCH---HHhhhcCc-------HHHHHHHH-cCCCCEEEec-CcCCCc-cH
Confidence 345578888888888876667777766333332 23333321 11222222 8999999988 444321 11
Q ss_pred ccccCcEEEEeCCe
Q psy9494 120 LALWCDLRFVEENV 133 (314)
Q Consensus 120 lalacD~~ia~~~a 133 (314)
.=+.+|.|.+||++
T Consensus 235 ~D~vAd~ra~TPta 248 (432)
T TIGR00237 235 SDFVADLRAPTPSA 248 (432)
T ss_pred HHHhhhccCCCcHH
Confidence 33567888888765
No 164
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=40.66 E-value=42 Score=34.06 Aligned_cols=77 Identities=19% Similarity=0.298 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHhhhCCCccEEEEE-cCCCCccccCCcccccCCCCchhHHHHHHHHhcCCCCcEEEEEcCccccccccc
Q psy9494 42 KTLDALQENIKRFEDDTESPLAILY-GQEGNFCSGFDLHELDENPDTKLFDDFREFLQKPAKKPIIAAITGYAVGQGLDL 120 (314)
Q Consensus 42 ~~~~eL~~al~~~~~d~~vr~vVlt-g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~kPvIAav~G~a~GgG~~l 120 (314)
.--.++.++++.+++..++.++|+. |.| .+.++....+. .+...+. .++.|||.+| ||-.- +.|
T Consensus 176 ~A~~eIv~aI~~an~~~~~DvlIVaRGGG-------SiEDLW~FNdE----~vaRAi~-~s~iPvISAV-GHEtD--~tL 240 (440)
T COG1570 176 GAAEEIVEAIERANQRGDVDVLIVARGGG-------SIEDLWAFNDE----IVARAIA-ASRIPVISAV-GHETD--FTL 240 (440)
T ss_pred CcHHHHHHHHHHhhccCCCCEEEEecCcc-------hHHHHhccChH----HHHHHHH-hCCCCeEeec-ccCCC--ccH
Confidence 4567888888888888888887775 432 23322221111 1111112 8999999998 44332 222
Q ss_pred -cccCcEEEEeCCe
Q psy9494 121 -ALWCDLRFVEENV 133 (314)
Q Consensus 121 -alacD~~ia~~~a 133 (314)
=+.+|+|-+|+++
T Consensus 241 ~DfVAD~RApTPTa 254 (440)
T COG1570 241 ADFVADLRAPTPTA 254 (440)
T ss_pred HHhhhhccCCCchH
Confidence 2356777777754
No 165
>PRK06091 membrane protein FdrA; Validated
Probab=39.12 E-value=71 Score=33.45 Aligned_cols=53 Identities=13% Similarity=0.236 Sum_probs=33.4
Q ss_pred HHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCchhHHHHHHHHhcCCCCcEEEEEcCccc
Q psy9494 46 ALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTKLFDDFREFLQKPAKKPIIAAITGYAV 114 (314)
Q Consensus 46 eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~kPvIAav~G~a~ 114 (314)
.+.+.|+.+.+||++++|++.+.... ....+.+.+..+ ++.||||+..-|..-
T Consensus 239 ~~~D~L~~L~~DP~TkvIvly~kppa---------------E~v~~~fl~aar-~~~KPVVvlk~Grs~ 291 (555)
T PRK06091 239 SALTALEMLSADEKSEVIAFVSKPPA---------------EAVRLKIINAMK-ATGKPVVALFLGYTP 291 (555)
T ss_pred CHHHHHHHHhhCCCCcEEEEEEecCc---------------hHHHHHHHHHHh-hCCCCEEEEEecCCc
Confidence 34566777778888888888774311 111223333333 569999999988654
No 166
>PF03464 eRF1_2: eRF1 domain 2; InterPro: IPR005141 This domain is found in the release factor eRF1 which terminates protein biosynthesis by recognizing stop codons at the A site of the ribosome and stimulating peptidyl-tRNA bond hydrolysis at the peptidyl transferase centre. The crystal structure of human eRF1 is known []. The overall shape and dimensions of eRF1 resemble a tRNA molecule with domains 1, 2, and 3 of eRF1 corresponding to the anticodon loop, aminoacyl acceptor stem, and T stem of a tRNA molecule, respectively. The position of the essential GGQ motif at an exposed tip of domain 2 suggests that the Gln residue coordinates a water molecule to mediate the hydrolytic activity at the peptidyl transferase centre. A conserved groove on domain 1, 80 A from the GGQ motif, is proposed to form the codon recognition site []. This domain is also found in other proteins which may also be involved in translation termination ; PDB: 3AGK_A 2VGN_A 2VGM_A 3J16_A 3IZQ 3IR9_A 3OBW_A 3MCA_B 2QI2_A 3E1Y_D ....
Probab=38.77 E-value=54 Score=27.20 Aligned_cols=45 Identities=20% Similarity=0.279 Sum_probs=32.8
Q ss_pred EEEEEEcCCCCCCC--CC----------HHHHHHHHHHHHHh--hhCCCccEEEEEcCC
Q psy9494 25 ITLISLNRPDKINA--IN----------LKTLDALQENIKRF--EDDTESPLAILYGQE 69 (314)
Q Consensus 25 v~~itlnrp~~~Na--l~----------~~~~~eL~~al~~~--~~d~~vr~vVltg~g 69 (314)
+..|+.+-|.|+.. .+ ..++.++.+++.+. .+.++++.|||.|.|
T Consensus 25 ~~~i~~~ip~K~~~Gg~s~~rf~r~~~~~~f~~~i~~~l~~~f~~~~~~~~~iIiaGPG 83 (133)
T PF03464_consen 25 LQRIESNIPGKHKKGGQSQRRFEREKALEKFFKEIAEALKKYFLVNFDDVKCIIIAGPG 83 (133)
T ss_dssp EEEEE-GHCCCSSTTCSHHHHHHHHHHHHHHHHHHHHHHHHHCCCHTTTCSEEEEEEST
T ss_pred EEEEEecCCCccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhhhccccccEEEEECCH
Confidence 45677777888653 22 35677888888887 667789999999987
No 167
>PF13766 ECH_C: 2-enoyl-CoA Hydratase C-terminal region; PDB: 3JU1_A 3BPT_A.
Probab=32.59 E-value=1.2e+02 Score=24.82 Aligned_cols=62 Identities=8% Similarity=-0.067 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHhCCHH-HHHHHHHHHhhhhchHHHHHHHHHHHHhhhH---------HHHHHhc-CCCCCCCC
Q psy9494 231 GEAMTRAIQMSKLSQS-MLADRATVLSECETCREEWMSERKHYIGISF---------ELKFLQK-KKKAKNGH 292 (314)
Q Consensus 231 ~~a~~~a~~la~~~~~-~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~af~ek-r~p~~~~~ 292 (314)
+-+.+..+.|...+|. +..+-+.+++.....+.+.+..+-....... ....+.| +.|.|+-.
T Consensus 31 ~~a~~~~~~l~~~SP~Sl~vt~~~l~~~~~~sl~e~l~~E~~~a~~~~~~~DF~EGVRA~LIDKd~~P~W~p~ 103 (118)
T PF13766_consen 31 EWAQKTLETLRSGSPLSLKVTFEQLRRGRNLSLAECLRMEYRLASRCMRHPDFAEGVRALLIDKDKNPKWSPA 103 (118)
T ss_dssp HHHHHHHHHHCCS-HHHHHHHHHHHHCCTTS-HHHHHHHHHHHHHHHHCCSCHHHHHHHHTTS-------SSS
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHhccchHHHHHHHHHhcCCCCCCCCCC
Confidence 4566777888999999 9999999888877666665544322111111 0334445 67888764
No 168
>COG4805 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.13 E-value=68 Score=33.47 Aligned_cols=89 Identities=18% Similarity=0.123 Sum_probs=59.1
Q ss_pred HHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHHhCCHH-HHHHHHHHHhhhh---chHHHHHHHHHHHHhhhH
Q psy9494 202 MISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQS-MLADRATVLSECE---TCREEWMSERKHYIGISF 277 (314)
Q Consensus 202 lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~~~-~~~~K~~~~~~~~---~~~~~~~~~~~~~~~~~~ 277 (314)
-..|+...|.+|..++||- +| .++..+..++++++--.+-. ++...+.++.... ...++++..-..
T Consensus 276 ~~~TTt~~tPdeihqlGL~-ev---a~i~aqm~~~~~~~g~~~G~~~~~f~~~l~~~~~~~~~~~~qLL~~~~~------ 345 (588)
T COG4805 276 HLYTTTDLTPDEIHQLGLE-EV---ARIEAQMDQVAKQLGFTQGQRLRAFMKMLRQDEAFTDEGREQLLAYYRE------ 345 (588)
T ss_pred HHHhccCCCHHHHHHHHHH-HH---HHHHHHHHHHHHHhCCCcchHHHHHHHHhhcccccccccHHHHHHHHHH------
Confidence 3578999999999999985 33 46778888888888653333 5555555554332 233444433221
Q ss_pred HHHHHhcCCCCCCCCcCCCCCcc
Q psy9494 278 ELKFLQKKKKAKNGHLVHRPFPI 300 (314)
Q Consensus 278 ~~af~ekr~p~~~~~~~~~~~p~ 300 (314)
..+-++.+.|.+.|.+++.|+-+
T Consensus 346 ~a~~~~a~lp~~fg~lPk~p~ei 368 (588)
T COG4805 346 IAKRADARLPAVFGVLPKAPFEI 368 (588)
T ss_pred HHHHHHHhhhHHhccCCCCccee
Confidence 13667889999999999888843
No 169
>PF06833 MdcE: Malonate decarboxylase gamma subunit (MdcE); InterPro: IPR009648 This family consists of several bacterial malonate decarboxylase gamma subunit proteins. Malonate decarboxylase of Klebsiella pneumoniae consists of four different subunits and catalyses the conversion of malonate plus H+ to acetate and CO2. The catalysis proceeds via acetyl and malonyl thioester residues with the phosphribosyl-dephospho-CoA prosthetic group of the acyl carrier protein (ACP) subunit. MdcD and E together probably function as malonyl-S-ACP decarboxylase []. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.
Probab=31.46 E-value=73 Score=29.66 Aligned_cols=91 Identities=12% Similarity=0.099 Sum_probs=51.2
Q ss_pred CCCCCHHHHHHHHHHHHHhhhCCCccEEEEE--cCCCCccccCCcccccCCCCchhHHHHHHH---Hh--cCCCCcEEEE
Q psy9494 36 INAINLKTLDALQENIKRFEDDTESPLAILY--GQEGNFCSGFDLHELDENPDTKLFDDFREF---LQ--KPAKKPIIAA 108 (314)
Q Consensus 36 ~Nal~~~~~~eL~~al~~~~~d~~vr~vVlt--g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~---~~--~~~~kPvIAa 108 (314)
...+..+.--.+.+++.+.-++..-|-||+- -.|+.++- -+|+.. ....+... +. +...-|||+.
T Consensus 40 ~~~vGl~ea~~lA~~V~~~i~~~~krpIv~lVD~~sQa~gr---reEllG-----i~~alAhla~a~a~AR~~GHpvI~L 111 (234)
T PF06833_consen 40 HGEVGLEEAWALAKAVLDTIRSGPKRPIVALVDVPSQAYGR---REELLG-----INQALAHLAKAYALARLAGHPVIGL 111 (234)
T ss_pred CCcccHHHHHHHHHHHHHHHhcCCCCCEEEEEeCCccccch---HHHHhh-----HHHHHHHHHHHHHHHHHcCCCeEEE
Confidence 4677777766676666655544344444332 33333321 000000 01111111 11 1788899999
Q ss_pred EcCcccccccc-ccccCcEEEEeCCeE
Q psy9494 109 ITGYAVGQGLD-LALWCDLRFVEENVL 134 (314)
Q Consensus 109 v~G~a~GgG~~-lalacD~~ia~~~a~ 134 (314)
|-|.|++|||- -.+.+|-++|=+++.
T Consensus 112 v~G~A~SGaFLA~GlqA~rl~AL~ga~ 138 (234)
T PF06833_consen 112 VYGKAMSGAFLAHGLQANRLIALPGAM 138 (234)
T ss_pred EecccccHHHHHHHHHhcchhcCCCCe
Confidence 99999999975 667788888766543
No 170
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=31.17 E-value=1.1e+02 Score=30.88 Aligned_cols=81 Identities=16% Similarity=0.158 Sum_probs=47.5
Q ss_pred HHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCchhHHHHHHHHhc-CCCCcEEEEEcCcccccccccccc
Q psy9494 45 DALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTKLFDDFREFLQK-PAKKPIIAAITGYAVGQGLDLALW 123 (314)
Q Consensus 45 ~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~-~~~kPvIAav~G~a~GgG~~lala 123 (314)
-.+.+.++.+.+||++++|++..++ + .+ ...+.+..++ ...||||+..-|..- .|-..+..
T Consensus 189 ~~~~d~l~~l~~D~~t~~I~ly~E~--~------------~~---~~~f~~aa~~a~~~KPVv~~k~Grs~-~g~~aa~s 250 (447)
T TIGR02717 189 IDESDLLEYLADDPDTKVILLYLEG--I------------KD---GRKFLKTAREISKKKPIVVLKSGTSE-AGAKAASS 250 (447)
T ss_pred CCHHHHHHHHhhCCCCCEEEEEecC--C------------CC---HHHHHHHHHHHcCCCCEEEEecCCCh-hhhhhhhh
Confidence 3567888999999999999998765 1 01 1223333333 348999999999874 33333333
Q ss_pred CcEEEEeCCeEeeccccccc
Q psy9494 124 CDLRFVEENVLMGFYNRRFV 143 (314)
Q Consensus 124 cD~~ia~~~a~f~~pe~~~G 143 (314)
+---++.++..+--...+.|
T Consensus 251 Htgalag~~~~~~a~~~~~G 270 (447)
T TIGR02717 251 HTGALAGSDEAYDAAFKQAG 270 (447)
T ss_pred ccccccChHHHHHHHHHHCC
Confidence 33334444443333333444
No 171
>TIGR00377 ant_ant_sig anti-anti-sigma factor. This superfamily includes small (105-125 residue) proteins related to SpoIIAA of Bacillus subtilis, an anti-anti-sigma factor. SpoIIAA can bind to and inhibit the anti-sigma F factor SpoIIAB. Also, it can be phosphorylated by SpoIIAB on a Ser residue at position 59 of the seed alignment. A similar arrangement is inferred for RsbV, an anti-anti-sigma factor for sigma B. This Ser is fairly well conserved within a motif resembling MXS[STA]G[VIL]X[VIL][VILF] among homologous known or predicted anti-anti-sigma factors. Regions similar to SpoIIAA and apparently homologous, but differing considerably near the phosphorlated Ser of SpoIIAA, appear in a single copy in several longer proteins.
Probab=30.92 E-value=1.5e+02 Score=22.71 Aligned_cols=49 Identities=14% Similarity=0.205 Sum_probs=34.7
Q ss_pred cEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCC
Q psy9494 16 SVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQE 69 (314)
Q Consensus 16 ~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g 69 (314)
.+.++..+++.++++.. .++.+....+.+.+..+..++..+.|++--.+
T Consensus 4 ~i~~~~~~~~~vi~~~G-----~l~~~~~~~~~~~l~~~~~~~~~~~vvidls~ 52 (108)
T TIGR00377 4 NIETEVQEGVVIVRLSG-----ELDAHTAPLLREKVTPAAERTGPRPIVLDLED 52 (108)
T ss_pred EEEEEEECCEEEEEEec-----ccccccHHHHHHHHHHHHHhcCCCeEEEECCC
Confidence 46778889999999864 35555677777777776665567778876544
No 172
>smart00870 Asparaginase Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma PUBMED:3026924. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma PUBMED:2407723, PUBMED:3379033 - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die.
Probab=26.49 E-value=2e+02 Score=27.74 Aligned_cols=31 Identities=10% Similarity=-0.003 Sum_probs=25.5
Q ss_pred CCCCHHHHHHHHHHHHHhhhCCCccEEEEEc
Q psy9494 37 NAINLKTLDALQENIKRFEDDTESPLAILYG 67 (314)
Q Consensus 37 Nal~~~~~~eL~~al~~~~~d~~vr~vVltg 67 (314)
.-++++-+.+|.+.+++.-+++++.++|+|.
T Consensus 55 s~~t~~~w~~la~~i~~~~~~~~~dG~VVtH 85 (323)
T smart00870 55 SNMTPADWLKLAKRINEALADDGYDGVVVTH 85 (323)
T ss_pred ccCCHHHHHHHHHHHHHHhccCCCCEEEEec
Confidence 4689999999999998876667788888875
No 173
>COG0252 AnsB L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D [Amino acid transport and metabolism / Translation, ribosomal structure and biogenesis]
Probab=26.19 E-value=2.9e+02 Score=27.21 Aligned_cols=37 Identities=19% Similarity=0.148 Sum_probs=30.6
Q ss_pred EEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEc
Q psy9494 29 SLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYG 67 (314)
Q Consensus 29 tlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg 67 (314)
.+|-+. ..|+++.+.+|.+.+.+.-+++++.+||||.
T Consensus 72 ~~ni~S--~~m~~~~w~~la~~I~~~~~~~~~dGvVItH 108 (351)
T COG0252 72 VLNIDS--SDMTPEDWLRLAEAINEALDDGDVDGVVITH 108 (351)
T ss_pred eccCCc--ccCCHHHHHHHHHHHHHHhccCCCCeEEEeC
Confidence 344443 5899999999999999999888888888885
No 174
>COG0528 PyrH Uridylate kinase [Nucleotide transport and metabolism]
Probab=26.09 E-value=1.9e+02 Score=27.08 Aligned_cols=54 Identities=17% Similarity=0.100 Sum_probs=39.6
Q ss_pred ccccEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCc
Q psy9494 13 LVSSVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNF 72 (314)
Q Consensus 13 ~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F 72 (314)
.|..|.++..|.+. .++..+.+|.+.++.+.+.++++.+. .+++-|+.|.|+.|
T Consensus 4 ~~~rillkLsGe~l-----~g~~~~gid~~~i~~~a~~i~~~~~~-g~eV~iVvGGGni~ 57 (238)
T COG0528 4 KYMRILLKLSGEAL-----AGEQGFGIDPEVLDRIANEIKELVDL-GVEVAVVVGGGNIA 57 (238)
T ss_pred ceEEEEEEeeccee-----cCCCCCCCCHHHHHHHHHHHHHHHhc-CcEEEEEECCCHHH
Confidence 34456666655543 34445789999999999999999875 68898888887544
No 175
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=26.04 E-value=1.3e+02 Score=30.04 Aligned_cols=78 Identities=17% Similarity=0.244 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHhhhCCCccEEEEE-cCCCCccccCCcccccCCCCchhHHHHHHHHhcCCCCcEEEEEcCcccccccc
Q psy9494 41 LKTLDALQENIKRFEDDTESPLAILY-GQEGNFCSGFDLHELDENPDTKLFDDFREFLQKPAKKPIIAAITGYAVGQGLD 119 (314)
Q Consensus 41 ~~~~~eL~~al~~~~~d~~vr~vVlt-g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~kPvIAav~G~a~GgG~~ 119 (314)
.....++.++|+.+.... +-+|||. |.| ++ -||-.|.+ ..+.+.+. .++.|||.+| ||-.-- .-
T Consensus 175 ~~A~~~i~~al~~~~~~~-~Dviii~RGGG-S~---eDL~~Fn~-------e~v~~ai~-~~~~Pvis~I-GHE~D~-tl 239 (438)
T PRK00286 175 EGAAASIVAAIERANARG-EDVLIVARGGG-SL---EDLWAFND-------EAVARAIA-ASRIPVISAV-GHETDF-TI 239 (438)
T ss_pred ccHHHHHHHHHHHhcCCC-CCEEEEecCCC-CH---HHhhccCc-------HHHHHHHH-cCCCCEEEec-cCCCCc-cH
Confidence 345678888888887643 4555554 543 22 24433322 11222222 8999999988 444321 11
Q ss_pred ccccCcEEEEeCCe
Q psy9494 120 LALWCDLRFVEENV 133 (314)
Q Consensus 120 lalacD~~ia~~~a 133 (314)
.=+.+|.|.+||++
T Consensus 240 ~D~vAd~ra~TPta 253 (438)
T PRK00286 240 ADFVADLRAPTPTA 253 (438)
T ss_pred HHHhhhccCCChHH
Confidence 33567888888765
No 176
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=25.43 E-value=2.5e+02 Score=27.05 Aligned_cols=112 Identities=16% Similarity=0.152 Sum_probs=67.7
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcC-CCCccccCCccccc--------CCCC--------chh
Q psy9494 27 LISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQ-EGNFCSGFDLHELD--------ENPD--------TKL 89 (314)
Q Consensus 27 ~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~--------~~~~--------~~~ 89 (314)
++.||.. .|-+|...+....+++.+.-..+.-++-||-|. .+.|.---|..... +... ...
T Consensus 131 ilpi~Gs--~h~Vt~~~lAa~~e~~~~~~p~~rq~vAVlVGg~nk~f~~~~d~a~q~~~~l~k~l~~~g~~~lisfSRRT 208 (329)
T COG3660 131 ILPINGS--PHNVTSQRLAALREAFKHLLPLPRQRVAVLVGGNNKAFVFQEDKAHQFASLLVKILENQGGSFLISFSRRT 208 (329)
T ss_pred eeeccCC--CCcccHHHhhhhHHHHHhhCCCCCceEEEEecCCCCCCccCHHHHHHHHHHHHHHHHhCCceEEEEeecCC
Confidence 4666654 488999999999999999876666677666654 46665433321110 0000 011
Q ss_pred HHHHHHHHhcCCCCcEEEEEcCcccc--ccccccccCcEEEEeCCeEeecccc
Q psy9494 90 FDDFREFLQKPAKKPIIAAITGYAVG--QGLDLALWCDLRFVEENVLMGFYNR 140 (314)
Q Consensus 90 ~~~~~~~~~~~~~kPvIAav~G~a~G--gG~~lalacD~~ia~~~a~f~~pe~ 140 (314)
.+.....+..+.+--.+..-|+--.| --..+..++|++|++.++.--..|.
T Consensus 209 p~~~~s~l~~~l~s~~~i~w~~~d~g~NPY~~~La~Adyii~TaDSinM~sEA 261 (329)
T COG3660 209 PDTVKSILKNNLNSSPGIVWNNEDTGYNPYIDMLAAADYIISTADSINMCSEA 261 (329)
T ss_pred cHHHHHHHHhccccCceeEeCCCCCCCCchHHHHhhcceEEEecchhhhhHHH
Confidence 12233334435666667777777333 3466888999999998875333444
No 177
>PLN00049 carboxyl-terminal processing protease; Provisional
Probab=24.28 E-value=44 Score=33.05 Aligned_cols=94 Identities=17% Similarity=0.208 Sum_probs=54.9
Q ss_pred CCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEE--EcCC-CCccccCCcccccCCCCch-h---HHHHHH
Q psy9494 23 LNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAIL--YGQE-GNFCSGFDLHELDENPDTK-L---FDDFRE 95 (314)
Q Consensus 23 ~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVl--tg~g-~~F~aG~Dl~~~~~~~~~~-~---~~~~~~ 95 (314)
++|++|.+ +.|+....+++.++++++... +++.+|| ++++ +.+..+.++..+....... . ......
T Consensus 194 ~~IgYi~i------~~F~~~~~~~~~~~l~~l~~~-~~~glIlDLR~N~GG~~~~a~~ia~~f~~~~~~~~~~~~~~~~~ 266 (389)
T PLN00049 194 PKIGYIKL------TTFNQNASSAVKEAIETLRAN-GVDAFVLDLRDNSGGLFPAGIEIAKLWLDKGVIVYIADSRGVRD 266 (389)
T ss_pred CCEEEEEe------ccccchhHHHHHHHHHHHHHC-CCCEEEEEcCCCCCCCHHHHHHHHHHhcCCCcEEEEecCCCcee
Confidence 36888887 455666788999999999765 4777776 4654 4544444443322111100 0 000000
Q ss_pred HHh-----c-CCCCcEEEEEcCcccccccccccc
Q psy9494 96 FLQ-----K-PAKKPIIAAITGYAVGQGLDLALW 123 (314)
Q Consensus 96 ~~~-----~-~~~kPvIAav~G~a~GgG~~lala 123 (314)
.+. . ...+|++..+|+.+++++=.++.+
T Consensus 267 ~~~~~~~~~~~~~~PvvVLvn~~TaSasEi~a~a 300 (389)
T PLN00049 267 IYDADGSSAIATSEPLAVLVNKGTASASEILAGA 300 (389)
T ss_pred EEecCCCccccCCCCEEEEECCCCccHHHHHHHH
Confidence 000 0 346899999999999887555544
No 178
>PF01740 STAS: STAS domain; InterPro: IPR002645 The STAS (Sulphate Transporter and AntiSigma factor antagonist) domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists. It has been suggested that this domain may have a general NTP binding function. The establishment of differential gene expression in sporulating Bacillus subtilis involves four protein components one of which is SpoIIAA (P10727 from SWISSPROT). The four components regulate the sporulation sigma factor F. Early in sporulation, SpoIIAA is in the phosphorylated state (SpoIIAA-P), as a result of the activity of the ATP-dependent protein kinase SpoIIAB (P10728 from SWISSPROT). The site at which this protein is a conserved serine. SpoIIAB is an anti-sigma factor that in its free form inhibits F by binding to it. Competition by SpoIIAA (the anti-anti-sigma factor) for binding to SpoIIAB releases Sigma F activity []. The STAS domain is found in the anti-sigma factor antagonist SpoIIAA.; PDB: 3T6O_B 3LKL_B 1H4Z_A 1H4Y_B 1H4X_B 3NY7_A 3OIZ_A 1T6R_A 1VC1_B 1SBO_A ....
Probab=23.53 E-value=2.9e+02 Score=21.50 Aligned_cols=48 Identities=13% Similarity=0.211 Sum_probs=38.6
Q ss_pred EEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCC--------ccEEEEEcCC
Q psy9494 17 VCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTE--------SPLAILYGQE 69 (314)
Q Consensus 17 v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~--------vr~vVltg~g 69 (314)
+.++..+++.+++++. .++......+.+.+.++..... .+.|||--.+
T Consensus 2 ~~~~~~~~v~ii~~~g-----~l~f~~~~~~~~~i~~~~~~~~~~~~~~~~~~~vIlD~s~ 57 (117)
T PF01740_consen 2 IEIETHDGVLIIRLDG-----PLFFANAEEFRDRIRKLIDEDPERIKKRQTIKNVILDMSG 57 (117)
T ss_dssp CEEEEETTEEEEEEES-----EESHHHHHHHHHHHHHHHCCSSS--HTSSSSSEEEEEETT
T ss_pred CeeEEECCEEEEEEee-----EEEHHHHHHHHHHHHHhhhcccccccccccceEEEEEEEe
Confidence 4678889999999976 4688888999999988887765 7888887554
No 179
>cd04241 AAK_FomA-like AAK_FomA-like: This CD includes a fosfomycin biosynthetic gene product, FomA, and similar proteins found in a wide range of organisms. Together, the fomA and fomB genes in the fosfomycin biosynthetic gene cluster of Streptomyces wedmorensis confer high-level fosfomycin resistance. FomA and FomB proteins converted fosfomycin to fosfomycin monophosphate and fosfomycin diphosphate in the presence of ATP and a magnesium ion, indicating that FomA and FomB catalyzed phosphorylations of fosfomycin and fosfomycin monophosphate, respectively. FomA and related sequences in this CD are members of the Amino Acid Kinase Superfamily (AAK).
Probab=20.84 E-value=2e+02 Score=26.15 Aligned_cols=36 Identities=14% Similarity=0.283 Sum_probs=28.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCC
Q psy9494 32 RPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEG 70 (314)
Q Consensus 32 rp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~ 70 (314)
.++..+.++.+.++++.+.+.++. ..++|++.|.|.
T Consensus 13 ~~~~~~~~~~~~l~~l~~~l~~l~---g~~vvlVhGgg~ 48 (252)
T cd04241 13 DKDRPETIREENLERIARELAEAI---DEKLVLVHGGGS 48 (252)
T ss_pred cCCCCCccCHHHHHHHHHHHHhcc---CCCEEEEECCCc
Confidence 444456799999999999998876 568898988664
Done!