RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9494
(314 letters)
>3r9q_A Enoyl-COA hydratase/isomerase; ssgcid, lyase,isomerase; 2.10A
{Mycobacterium abscessus} PDB: 3qka_A
Length = 262
Score = 174 bits (443), Expect = 2e-53
Identities = 84/273 (30%), Positives = 127/273 (46%), Gaps = 46/273 (16%)
Query: 24 NITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDE 83
+T + LNRP NA++ T AL F+ D E+ +A+L+G G FC+G DL +
Sbjct: 20 PVTTVILNRPHARNAVDGPTAAALLAAFTEFDADPEASVAVLWGDNGTFCAGADLKAMGT 79
Query: 84 NPDTKLFDDFREFL---QKPAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNR 140
+ +L + + KP+IAAI+G+AV G++LALWCDLR VEE+ ++G + R
Sbjct: 80 DRGNELHPHGPGPMGPSRLRLSKPVIAAISGHAVAGGIELALWCDLRVVEEDAVLGVFCR 139
Query: 141 RFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTM 200
R+ GV L T RL ++IG SR M
Sbjct: 140 RW----------GVPLID---GGTI-----------------------RLPRLIGHSRAM 163
Query: 201 DMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQ-SMLADRATVLSECE 259
D+I GR + A EALD GL N++V G A A T A +++ Q + ADR + +++
Sbjct: 164 DLILTGRPVHANEALDIGLVNRVVARGQAREAAETLAAEIAAFPQQCVRADRDSAIAQWG 223
Query: 260 TCREE-WMSERKHYIGISFELK-----FLQKKK 286
E +E ++ E F +
Sbjct: 224 MAEEAALDNEFGSIERVATEALEGAGRFAAGEG 256
>3lao_A Enoyl-COA hydratase/isomerase; alpha-beta sandwich, structural
genomics, PSI-2, protein structure initiative; HET: MSE;
2.40A {Pseudomonas aeruginosa}
Length = 258
Score = 135 bits (343), Expect = 2e-38
Identities = 52/238 (21%), Positives = 81/238 (34%), Gaps = 48/238 (20%)
Query: 24 NITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHEL-- 81
++ LI L+R K NA + L L + +E ES A+L+ +F +G DL EL
Sbjct: 21 HLFLIGLDRAGKRNAFDSAMLADLALAMGEYERSEESRCAVLFAHGEHFTAGLDLMELAP 80
Query: 82 ----DENPDTKLFDDFREFLQKPAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGF 137
D +Q KP++ A+ G G++L L D+
Sbjct: 81 KLAASGFRYPDGGVDPWGVVQPRRSKPLVVAVQGTCWTAGIELMLNADIAVAARGTRFAH 140
Query: 138 YNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTS 197
G+ P T+R + G +
Sbjct: 141 LEVLR----------GI-------------------------PPLGGSTVR-FPRAAGWT 164
Query: 198 RTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKL--SQSMLADRAT 253
M I G A EAL L ++V GE + RA++ ++ + LA RA
Sbjct: 165 DAMRYILTGDEFDADEALRMRLLTEVV----EPGEELARALEYAERIARAAPLAVRAA 218
>3qxi_A Enoyl-COA hydratase ECHA1; structural genomics, seattle structural
genomics center for infectious disease, ssgcid,
tuberculosis; 2.20A {Mycobacterium marinum}
Length = 265
Score = 134 bits (340), Expect = 5e-38
Identities = 56/251 (22%), Positives = 98/251 (39%), Gaps = 38/251 (15%)
Query: 24 NITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDE 83
I +I++NRP N++N AL + + R + D + IL G G+FC+G DL
Sbjct: 24 RILIITINRPKAKNSVNAAVSRALADAMDRLDADAGLSVGILTGAGGSFCAGMDLKAFAR 83
Query: 84 NPDTKLFDDFREFLQKPAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFV 143
+ + F ++P KP+IAA+ GYA+ G +LAL DL + G
Sbjct: 84 GENVVVEGRGLGFTERPPAKPLIAAVEGYALAGGTELALATDLIVAARDSAFG------- 136
Query: 144 YLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMI 203
+P ++K L + +R L + I + M++
Sbjct: 137 -----------------IP--EVKRGL---------VAGGGGLLR-LPERIPYAIAMELA 167
Query: 204 SLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQ--SMLADRATVLSECETC 261
G +++A A G+ N + G A+ A+ A +++ R S +
Sbjct: 168 LTGDNLSAERAHALGMVNVLAEPGAALDAAIALAEKITANGPLAVAATKRIITESRGWSL 227
Query: 262 REEWMSERKHY 272
+ + K
Sbjct: 228 DTRFAQQMKIL 238
>3qxz_A Enoyl-COA hydratase/isomerase; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, tuberculosis; 1.35A {Mycobacterium abscessus}
Length = 265
Score = 133 bits (337), Expect = 2e-37
Identities = 53/256 (20%), Positives = 97/256 (37%), Gaps = 53/256 (20%)
Query: 24 NITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDE 83
+ +++L+ P N+ ++ L +R +DD + +L G FCSG + E
Sbjct: 16 GVAVLTLHGPSTRNSFTVELGRQLGAAYQRLDDDPAVRVIVLTGAPPAFCSGAQISAAAE 75
Query: 84 NPDTKLFDDFREFLQKPA----KKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYN 139
DF +PA + P+IAA+ G+A+G G+ LAL D+R + E
Sbjct: 76 TFAAPRNPDFSASPVQPAAFELRTPVIAAVNGHAIGIGMTLALHADIRILAEEGRYAI-- 133
Query: 140 RRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRT 199
V GV P L +++GT+
Sbjct: 134 -PQVRF-------GV-------------------------APDALAHW-TLPRLVGTAVA 159
Query: 200 MDMISLGRHITAREALDWGLCNKMVNCGTAVGEAM-----------TRAIQMSKLSQSML 248
+++ G +A+ A++ GL N+ + G +G A+ + ++K + +
Sbjct: 160 AELLLTGASFSAQRAVETGLANRCLPAGKVLGAALRMAHDIATNVAPESAALTK--RLLW 217
Query: 249 ADRATVLSECETCREE 264
+ T +S E E
Sbjct: 218 DAQMTGMSAAEVAARE 233
>3trr_A Probable enoyl-COA hydratase/isomerase; ssgcid, structural
genomics, seattle structural genomics CEN infectious
disease; 2.09A {Mycobacterium abscessus}
Length = 256
Score = 131 bits (333), Expect = 6e-37
Identities = 59/251 (23%), Positives = 98/251 (39%), Gaps = 39/251 (15%)
Query: 24 NITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDE 83
+ LI++NRPD NA+N L + + + +AI+ G GNFC+G DL
Sbjct: 16 RVLLITINRPDARNAVNRAVSQGLAAAADQLDSSADLSVAIITGAGGNFCAGMDLKAFVS 75
Query: 84 NPDTKLFDDFREFLQKPAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFV 143
+ L + F P +KPIIAA+ G+A+ G +L L CDL + G
Sbjct: 76 G-EAVLSERGLGFTNVPPRKPIIAAVEGFALAGGTELVLSCDLVVAGRSAKFG------- 127
Query: 144 YLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMI 203
+P ++K L + +R L I M++
Sbjct: 128 -----------------IP--EVKRGL---------VAGAGGLLR-LPNRIPYQVAMELA 158
Query: 204 SLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQ--SMLADRATVLSECETC 261
G TA +A +G N++V+ G A+ A+ A +++ R + S
Sbjct: 159 LTGESFTAEDAAKYGFINRLVDDGQALDTALELAAKITANGPLAVAATKRIIIESASWAP 218
Query: 262 REEWMSERKHY 272
E + + +
Sbjct: 219 EEAFAKQGEIL 229
>2q35_A CURF; crotonase, lyase; 1.65A {Lyngbya majuscula} PDB: 2q34_A
2q2x_A
Length = 243
Score = 131 bits (331), Expect = 8e-37
Identities = 40/246 (16%), Positives = 76/246 (30%), Gaps = 52/246 (21%)
Query: 24 NITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDE 83
+ I++ N + ++ L+ + + + IL G F SG L
Sbjct: 12 GVVQITMKDESSRNGFSPSIVEGLRHCFSVVAQNQQYKVVILTGYGNYFSSGASKEFLIR 71
Query: 84 --NPDTKLFDDFREFLQKPAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRR 141
+ ++ D L PIIAA+ G++ G GL L L+ D + +
Sbjct: 72 KTRGEVEVLDLSGLILDCE--IPIIAAMQGHSFGGGLLLGLYADFVVFSQESVYAT---N 126
Query: 142 FVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMD 201
F+ G P + L + +G+ +
Sbjct: 127 FMKY-------GF-------------------------TPVGATS-LILREKLGSELAQE 153
Query: 202 MISLGRHITAREALDWGLCNKMVNCGTAVGEAM----------TRAIQMSK--LSQSMLA 249
MI G + +E + G+ +V+ + A ++ K LS + A
Sbjct: 154 MIYTGENYRGKELAERGIPFPVVSRQDVLNYAQQLGQKIAKSPRLSLVALKQHLSADIKA 213
Query: 250 DRATVL 255
+
Sbjct: 214 KFPEAI 219
>3pe8_A Enoyl-COA hydratase; emerald biostructures, structural genomics,
seattle structur genomics center for infectious disease,
ssgcid, lyase; 1.60A {Mycobacterium smegmatis} PDB:
3p85_A* 3qyr_A
Length = 256
Score = 130 bits (329), Expect = 2e-36
Identities = 55/233 (23%), Positives = 97/233 (41%), Gaps = 48/233 (20%)
Query: 24 NITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHEL-D 82
+ ++LNRP NA++ + + ++D + + I+ G + FC+G DL EL D
Sbjct: 18 RVRTLTLNRPQSRNALSAELRSTFFRALSDAQNDDDVDVVIVTGADPVFCAGLDLKELGD 77
Query: 83 ENPDTKLFDDFREFLQKPAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRF 142
+ + + KP+I AI G AV GL+LAL+CD+ EN
Sbjct: 78 TTELPDISPKWPDM-----TKPVIGAINGAAVTGGLELALYCDILIASENAKFAD---TH 129
Query: 143 VYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDM 202
+ G+ +PT +++R L Q +G M
Sbjct: 130 ARV-------GL-------------------------MPTWGLSVR-LPQKVGVGLARRM 156
Query: 203 ISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSK--LSQSMLADRAT 253
G +++A++AL GL ++V A + +T A +++ + + A RA
Sbjct: 157 SLTGDYLSAQDALRAGLVTEVV----AHDDLLTAARRVAASIVGNNQKAVRAL 205
>4f47_A Enoyl-COA hydratase ECHA19; ssgcid, seattle structural genomics
center for infectious DI niaid; 1.75A {Mycobacterium
marinum}
Length = 278
Score = 129 bits (328), Expect = 5e-36
Identities = 57/240 (23%), Positives = 102/240 (42%), Gaps = 50/240 (20%)
Query: 24 NITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDE 83
+ ++++NRP + NA++ + + + E R ++D + IL G G FC+G DL +
Sbjct: 29 HTLIVTMNRPSRRNALSGEMMQIMVEAWDRVDNDPDIRCCILTGAGGYFCAGMDLKAATK 88
Query: 84 N--PDTKLFDDFREFLQK------PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLM 135
D+ + KKP+IAA+ G A+ G ++ D+R E+
Sbjct: 89 KPPGDSFKDGSYDPSRIDALLKGRRLKKPLIAAVEGPAIAGGTEILQGTDIRVAAESAKF 148
Query: 136 GFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIG 195
G ++ K SL P +R L + I
Sbjct: 149 GI--------------------------SEAKWSL---------YPMGGSAVR-LVRQIP 172
Query: 196 TSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKL--SQSMLADRAT 253
+ D++ GRHITA EA + GL +V G+A+T+A++++++ + LA +A
Sbjct: 173 YTVACDLLLTGRHITAAEAKEMGLVGHVV----PDGQALTKALEIAEIIAANGPLAVQAI 228
>3swx_A Probable enoyl-COA hydratase/isomerase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; 2.10A {Mycobacterium abscessus}
Length = 265
Score = 129 bits (327), Expect = 5e-36
Identities = 53/238 (22%), Positives = 86/238 (36%), Gaps = 48/238 (20%)
Query: 24 NITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDE 83
+ +I LNRP K NA + L+ L + +E DT+ A+LYG+ F +G DL +
Sbjct: 18 YVLVIGLNRPAKRNAFDKTMLEELALALGEYETDTDLRAAVLYGEGPLFTAGLDLASVAA 77
Query: 84 NPDTKLFDDFREFLQ------KPAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGF 137
+ + KP++ A+ G + G++LAL D+ +E
Sbjct: 78 EIQGGASLTPEGGINPWQVDGRQLSKPLLVAVHGKVLTLGIELALAADIVIADETATFAQ 137
Query: 138 YNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTS 197
V G+ P TIR + G
Sbjct: 138 L---EVNR-------GI-------------------------YPFGGATIR-FPRTAGWG 161
Query: 198 RTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSK--LSQSMLADRAT 253
M + A EA G+ ++V VGE + AI +++ Q+ L +AT
Sbjct: 162 NAMRWMLTADTFDAVEAHRIGIVQEIV----PVGEHVDTAIAIAQTIARQAPLGVQAT 215
>3r6h_A Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium marinum, structura
genomics, seattle structural genomics center for
infectious lyase; 1.75A {Mycobacterium marinum M}
Length = 233
Score = 128 bits (323), Expect = 7e-36
Identities = 42/235 (17%), Positives = 70/235 (29%), Gaps = 45/235 (19%)
Query: 24 NITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDE 83
I +I ++ K+N + AL E I + D ++ G F GFDL L
Sbjct: 14 AIGVIRMDDG-KVNVLGPTMQQALNEAIDAADRD-NVGALVIAGNHRVFSGGFDLKVLTS 71
Query: 84 NPDTKLFDDFREFLQKPAK-----KPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFY 138
D R + + KP++ A TG+A+ G L D R +
Sbjct: 72 GEAKPAIDMLRGGFELSYRLLSYPKPVVIACTGHAIAMGAFLLCSGDHRVAAHAYNVQA- 130
Query: 139 NRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSR 198
V + G+ + + L + S
Sbjct: 131 --NEVAI-------GMT---IPYAAME-----------------------VLKLRLTPSA 155
Query: 199 TMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQSMLADRAT 253
L + AL G +++ + A A + + L + A AT
Sbjct: 156 YQQAAGLAKTFFGETALAAGFIDEISLPEVVLSRAEEAAREFAGL--NQQAHNAT 208
>3qmj_A Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid, SBRI, UW, emerald
biostructures, structu genomics; 2.20A {Mycobacterium
marinum}
Length = 256
Score = 128 bits (324), Expect = 1e-35
Identities = 50/234 (21%), Positives = 82/234 (35%), Gaps = 48/234 (20%)
Query: 25 ITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDEN 84
+ ++LNRP+ +NA N DA + + DD + + +L G F +G DL E+
Sbjct: 16 VRTLTLNRPEALNAFNEALYDATAQALLDAADDPQVAVVLLTGSGRGFSAGTDLAEMQAR 75
Query: 85 PDTKLFDDFREFLQKP------AKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFY 138
F + + + KP+I A+ G VG G + + DL F+ +
Sbjct: 76 ITDPNFSEGKFGFRGLIKALAGFPKPLICAVNGLGVGIGATILGYADLAFMSSTARLKC- 134
Query: 139 NRRFVYLKDSLLSSGVVLYALHVPR---TQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIG 195
F L GV P + L Q++G
Sbjct: 135 --PFTSL-------GV------APEAASSY-----------------------LLPQLVG 156
Query: 196 TSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQSMLA 249
++ I A EAL GL ++ + + EA A ++ S L
Sbjct: 157 RQNAAWLLMSSEWIDAEEALRMGLVWRICSPEELLPEARRHAEILAAKPISSLM 210
>2gtr_A CDY-like, chromodomain Y-like protein; structural genomics,
structural genomics consortium, SGC, unknown function;
1.90A {Homo sapiens} PDB: 2fw2_A
Length = 261
Score = 128 bits (324), Expect = 1e-35
Identities = 53/284 (18%), Positives = 97/284 (34%), Gaps = 63/284 (22%)
Query: 25 ITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDEN 84
++ + + N++N + + +Q + D +S L +L FC G D
Sbjct: 16 THILLSTKSSENNSLNPEVMREVQSALSTAAAD-DSKLVLLSAVGSVFCCGLDFIYFIRR 74
Query: 85 PDTKLFDDFREFLQK---------PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLM 135
+ + + KKPII A+ G A+G G + CD+ + E
Sbjct: 75 LTDDRKRESTKMAEAIRNFVNTFIQFKKPIIVAVNGPAIGLGASILPLCDVVWANEKAWF 134
Query: 136 GFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIG 195
+ G P T+ +++G
Sbjct: 135 QT---PYTTF-------GQ-------------------------SPDGCSTVM-FPKIMG 158
Query: 196 TSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAM----------TRAIQMSK--L 243
+ +M+ GR +TA+EA GL +++ GT E M ++ SK +
Sbjct: 159 GASANEMLLSGRKLTAQEACGKGLVSQVFWPGTFTQEVMVRIKELASCNPVVLEESKALV 218
Query: 244 SQSMLADRATVLS-ECETCREEWMSERKHYIGISFELKFLQKKK 286
+M + ECE ++ W S + + K+LQ+K
Sbjct: 219 RCNMKMELEQANERECEVLKKIWGSA-QGMDSML---KYLQRKI 258
>3isa_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2,
protein structure initiative, EN hydratase; 1.76A
{Bordetella parapertussis}
Length = 254
Score = 127 bits (322), Expect = 2e-35
Identities = 38/255 (14%), Positives = 72/255 (28%), Gaps = 51/255 (20%)
Query: 25 ITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDEN 84
+L+RP+K NA++ + ++AL + + + + PL + G NF +GFD + +
Sbjct: 17 AWTFTLSRPEKRNALSAELVEALIDGVDAAHRE-QVPLLVFAGAGRNFSAGFDFTDYETQ 75
Query: 85 PDTKLFDDFREFLQKPAK-----KPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYN 139
+ L + +A G G G+DL C R+
Sbjct: 76 SEGDLLLRMVRIEMLLQRVAGSPSLTLALAHGRNFGAGVDLFAACKWRYCTPEAGFRM-- 133
Query: 140 RRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRT 199
+ G+ V T+ R ++G +
Sbjct: 134 -PGLKF-------GL------VLGTR-----------------------RFRDIVGADQA 156
Query: 200 MDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQSMLA------DRAT 253
+ ++ R A EA G A + L + A
Sbjct: 157 LSILGSARAFDADEARRIGFVRDCAAQAQWPALIDAAAEAATALDPATRATLHRVLRDDH 216
Query: 254 VLSECETCREEWMSE 268
++
Sbjct: 217 DDADLAALARSAAQP 231
>3ot6_A Enoyl-COA hydratase/isomerase family protein; structural genomics,
PSI-2, protein structure initiative; 2.50A {Pseudomonas
syringae PV}
Length = 232
Score = 125 bits (317), Expect = 5e-35
Identities = 47/235 (20%), Positives = 80/235 (34%), Gaps = 46/235 (19%)
Query: 24 NITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDE 83
+ ++LN K+NAI+ + A + + E D + I+ GQ G G+DL +
Sbjct: 15 GVATLTLNNG-KVNAISPDVIIAFNAALDQAEKDRA--IVIVTGQPGILSGGYDLKVMTS 71
Query: 84 NP--DTKLFDDFREFLQKPA--KKPIIAAITGYAVGQGLDLALWCDLRF-VEENVLMGFY 138
+ L ++ PII A G+AV +G L L D R V +G
Sbjct: 72 SAEAAINLVAQGSTLARRMLSHPFPIIVACPGHAVAKGAFLLLSADYRIGVAGPFSIGL- 130
Query: 139 NRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSR 198
V + G+ +H + + S
Sbjct: 131 --NEVQI-------GMT---MHHAGIE-----------------------LARDRLRKSA 155
Query: 199 TMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQSMLADRAT 253
+ A+ G +K+V+ G A+ A Q+ K+ +M A + T
Sbjct: 156 FNRSVINAEMFDPEGAMAAGFLDKVVSVEELQGAALAVAAQLKKI--NMNAHKKT 208
>3g64_A Putative enoyl-COA hydratase; alpha-beta structure, structural
genomics, PSI-2, protein ST initiative; 2.05A
{Streptomyces coelicolor A3}
Length = 279
Score = 126 bits (320), Expect = 7e-35
Identities = 55/253 (21%), Positives = 90/253 (35%), Gaps = 58/253 (22%)
Query: 25 ITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHEL--- 81
+ ++L RPDK+NA+ + L++ + +L G+ FCSG D+ E+
Sbjct: 27 VATVTLARPDKLNALTFEAYADLRDLLAELSRRRAVRALVLAGEGRGFCSGGDVDEIIGA 86
Query: 82 DENPDTKLFDDFREFLQKPAK------KPIIAAITGYAVGQGLDLALWCDLRFVEENVLM 135
+ DT DF + + P+IAA+ G A G G LAL D R + +
Sbjct: 87 TLSMDTARLLDFNRMTGQVVRAVRECPFPVIAALHGVAAGAGAVLALAADFRVADPSTRF 146
Query: 136 GF-YNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMI 194
F + R + D + Y L PR ++
Sbjct: 147 AFLFTRVGLSGGDMGAA-----YLL--PR-----------------------------VV 170
Query: 195 GTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAM----------TRAIQMSK-- 242
G ++ LG + A EA GL +++ G A A A +K
Sbjct: 171 GLGHATRLLMLGDTVRAPEAERIGLISELTEEGRADEAARTLARRLADGPALAHAQTKAL 230
Query: 243 LSQSMLADRATVL 255
L+ + A +
Sbjct: 231 LTAELDMPLAAAV 243
>2f6q_A Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxisomes, fatty acid
metabolism, STR genomics, structural genomics
consortium, SGC; 1.95A {Homo sapiens} SCOP: c.14.1.3
Length = 280
Score = 126 bits (318), Expect = 1e-34
Identities = 59/291 (20%), Positives = 97/291 (33%), Gaps = 73/291 (25%)
Query: 24 NITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDE 83
IT I NRP K NAIN + + +K D +S + +L G + SG DL +
Sbjct: 35 GITKIMFNRPKKKNAINTEMYHEIMRALKAASKD-DSIITVLTGNGDYYSSGNDLTNFTD 93
Query: 84 NPDT-------KLFDDFREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEEN-- 132
P REF+ KP+IA + G AVG + L D + +
Sbjct: 94 IPPGGVEEKAKNNAVLLREFVGCFIDFPKPLIAVVNGPAVGISVTLLGLFDAVYASDRAT 153
Query: 133 VLMGFYNRRFVYLKDSLLSSGVVLYA---LHVPRTQLKHSLRDNLSRDLAIPTCDVTIRR 189
F + G P+
Sbjct: 154 FHTPFSHL------------GQSPEGCSSYTFPK-------------------------- 175
Query: 190 LGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAM----------TRAIQ 239
++ ++ +M+ G+ +TA EA GL ++ T E A++
Sbjct: 176 ---IMSPAKATEMLIFGKKLTAGEACAQGLVTEVFPDSTFQKEVWTRLKAFAKLPPNALR 232
Query: 240 MSK--LSQSMLADRATVLS-ECETCREEWMSERKHYIGISFELKFLQKKKK 287
+SK + + V + EC + W+S+ + + FL +K K
Sbjct: 233 ISKEVIRKREREKLHAVNAEECNVLQGRWLSD-ECTNAVV---NFLSRKSK 279
>3fdu_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2;
2.00A {Acinetobacter baumannii}
Length = 266
Score = 126 bits (318), Expect = 1e-34
Identities = 52/280 (18%), Positives = 100/280 (35%), Gaps = 59/280 (21%)
Query: 25 ITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDEN 84
+ +++NRP+ NA+ + + + + + + + + +L G E +F +G D+ +
Sbjct: 15 VLTLAINRPEAKNALYGELYLWIAKALDEADQNKDVRVVVLRGAEHDFTAGNDMKDFMGF 74
Query: 85 PDTKLFDDFREFLQKP-------AKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGF 137
+ KP+I A+ G A+G G+ + L DL F + L
Sbjct: 75 VQNPNAGPAGQVPPFVLLKSAARLSKPLIIAVKGVAIGIGVTILLQADLVFADNTALFQI 134
Query: 138 YNRRFVYLKDSLLSSGVVLYALHVPR---TQLKHSLRDNLSRDLAIPTCDVTIRRLGQMI 194
FV L G+ P +Q L +
Sbjct: 135 ---PFVSL-------GL------SPEGGASQ-----------------------LLVKQA 155
Query: 195 GTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLS-QSMLADRAT 253
G + +++ + A AL GL N++V A A A ++ L S+ +A
Sbjct: 156 GYHKAAELLFTAKKFNAETALQAGLVNEIVE--DAYATAQATAQHLTALPLASLKQTKAL 213
Query: 254 VLSECETCREEWMSERK--HYIGISFELK-----FLQKKK 286
+ + + E E + S E+ F+QK++
Sbjct: 214 MKHDLDQIIECIDHEAEIFMQRVQSPEMLEAVQAFMQKRQ 253
>3he2_A Enoyl-COA hydratase ECHA6; fatty acid metabolism, lipid metabolism,
lyase, structural genomics; HET: PGE; 2.30A
{Mycobacterium tuberculosis}
Length = 264
Score = 124 bits (313), Expect = 6e-34
Identities = 54/232 (23%), Positives = 91/232 (39%), Gaps = 47/232 (20%)
Query: 24 NITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDE 83
+ I L RP++ NA+N + ++ L + I++ D + + +L GQ FC+G DL
Sbjct: 30 AVLTIELQRPERRNALNSQLVEELTQAIRKAGDGSARAI-VLTGQGTAFCAGADLSGDAF 88
Query: 84 NPDT--KLFDDFREFLQKPAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRR 141
D +L + + P P++ AI G A+G GL LA+ CDLR V + F
Sbjct: 89 AADYPDRLIELHKAMDASP--MPVVGAINGPAIGAGLQLAMQCDLRVVAPDAFFQF---P 143
Query: 142 FVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMD 201
G+ RRL ++G R
Sbjct: 144 TSKY-------GL-------------------------ALDNWSI-RRLSSLVGHGRARA 170
Query: 202 MISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQSMLADRAT 253
M+ +TA AL G+ N++ + +A A +++ + LA +
Sbjct: 171 MLLSAEKLTAEIALHTGMANRIG----TLADAQAWAAEIA--RLAPLAIQHA 216
>2a7k_A CARB; crotonase, antibiotic, beta-lactam, biosynthetic protein;
2.24A {Pectobacterium carotovorum} SCOP: c.14.1.3 PDB:
2a81_A*
Length = 250
Score = 123 bits (311), Expect = 8e-34
Identities = 43/236 (18%), Positives = 85/236 (36%), Gaps = 50/236 (21%)
Query: 24 NITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQ-EGNFCSGFDLHELD 82
+ +I+L+ P+K N + ++++ + R D ++YG E +F +G D +E+
Sbjct: 9 EVRVITLDHPNKHNPFSRTLETSVKDALARANADDSVRAVVVYGGAERSFSAGGDFNEVK 68
Query: 83 ENPDTKLFDDFREFLQKP------AKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMG 136
+ ++ +++ + + KP IAA+ GYA+G G AL D R +
Sbjct: 69 QLSRSEDIEEWIDRVIDLYQAVLNVNKPTIAAVDGYAIGMGFQFALMFDQRLMASTANFV 128
Query: 137 FYNRRFVYLKDSLLSSGVVLYALHVP---RTQLKHSLRDNLSRDLAIPTCDVTIRRLGQM 193
+ G+ L
Sbjct: 129 M---PELKH-------GI------GCSVGAAIL---------------------GFT--- 148
Query: 194 IGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQSMLA 249
G S ++I + + A +D+ L N++V + A+T+A M+ S
Sbjct: 149 HGFSTMQEIIYQCQSLDAPRCVDYRLVNQVVESSALLDAAITQAHVMASYPASAFI 204
>2ej5_A Enoyl-COA hydratase subunit II; structural genomics, GK2038,
NPPSFA, national project on prote structural and
functional analyses; 2.00A {Geobacillus kaustophilus}
Length = 257
Score = 123 bits (311), Expect = 8e-34
Identities = 57/252 (22%), Positives = 93/252 (36%), Gaps = 60/252 (23%)
Query: 24 NITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDE 83
+ ++LNRPD++NA + + + +K+ D ++ G FC+G DL + E
Sbjct: 12 QVAWLTLNRPDQLNAFTEQMNAEVTKALKQAGADPNVRCVVITGAGRAFCAGEDLSGVTE 71
Query: 84 NPDTKLFDDFREFLQKPAK------KPIIAAITGYAVGQGLDLALWCDLRFVEENVLMG- 136
D D R K KP++AA+ G A G G+ LAL CD R + E
Sbjct: 72 EMD--HGDVLRSRYAPMMKALHHLEKPVVAAVNGAAAGAGMSLALACDFRLLSEKASFAP 129
Query: 137 -FYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIG 195
F + G+ +P L +++G
Sbjct: 130 AFIHV------------GL-------------------------VPDAGHLYY-LPRLVG 151
Query: 196 TSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAM----------TRAIQMSK--L 243
++ +++ LG +TA EA GL K++ E T+AI + K L
Sbjct: 152 RAKALELAVLGEKVTAEEAAALGLATKVIPLSDWEEEVKQFAERLSAMPTKAIGLIKRLL 211
Query: 244 SQSMLADRATVL 255
+S L
Sbjct: 212 RESEETTFDRYL 223
>1nzy_A Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogenase; lyase; HET:
BCA; 1.80A {Pseudomonas SP} SCOP: c.14.1.3 PDB: 1jxz_A*
1nzy_B*
Length = 269
Score = 123 bits (311), Expect = 1e-33
Identities = 43/236 (18%), Positives = 85/236 (36%), Gaps = 46/236 (19%)
Query: 24 NITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDE 83
+ I++ P NA+++K + + + + R E+D ++ G E FC+GF L E+
Sbjct: 12 GVAEITIKLPRHRNALSVKAMQEVTDALNRAEEDDSVGAVMITGAEDAFCAGFYLREIPL 71
Query: 84 NPDTKLFDDFREFLQKPA----------KKPIIAAITGYAVGQGLDLALWCDLRFVEENV 133
+ D K+P++AAI G A G GL ++L D+ ++
Sbjct: 72 DKGVAGVRDHFRIAALWWHQMIHKIIRVKRPVLAAINGVAAGGGLGISLASDMAICADSA 131
Query: 134 LMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQM 193
+ + G+ + L ++
Sbjct: 132 KFVC---AWHTI-------GI-------------------------GNDTATSYS-LARI 155
Query: 194 IGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQSMLA 249
+G R M+++ R + EA DWGL +++ A A +++ +
Sbjct: 156 VGMRRAMELMLTNRTLYPEEAKDWGLVSRVYPKDEFREVAWKVARELAAAPTHLQV 211
>2fbm_A Y chromosome chromodomain protein 1, telomeric IS;
acetyltransferase, structural genomics, structural
genomics consortium, SGC, unknown function; 2.28A {Homo
sapiens} SCOP: c.14.1.3
Length = 291
Score = 123 bits (312), Expect = 1e-33
Identities = 53/288 (18%), Positives = 95/288 (32%), Gaps = 63/288 (21%)
Query: 25 ITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDEN 84
++ R + NA+N + + + + D +S L + FC G D ++
Sbjct: 34 TQIVLSTRSTEKNALNTEVIKEIVNALNSAAAD-DSKLVLFSAAGSVFCCGLDFGYFVKH 92
Query: 85 P-------DTKLFDDFREFLQKPA--KKPIIAAITGYAVGQGLDLALWCDLRFVEENVLM 135
++ D + F+ KKPI+ ++ G A+G G + CDL + E
Sbjct: 93 LRNNRNTASLEMVDTIKNFVNTFIQFKKPIVVSVNGPAIGLGASILPLCDLVWANEKAWF 152
Query: 136 GFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIG 195
+ G P +I +M+G
Sbjct: 153 QT---PYTTF-------GQ-------------------------SPDGCSSIT-FPKMMG 176
Query: 196 TSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAM----------TRAIQMSK--L 243
+ +M+ GR +TAREA GL +++ GT E M ++ K +
Sbjct: 177 KASANEMLIAGRKLTAREACAKGLVSQVFLTGTFTQEVMIQIKELASYNPIVLEECKALV 236
Query: 244 SQSMLADRATVLS-ECETCREEWMSE-RKHYIGISFELK---FLQKKK 286
++ + ECE R+ W S + L +K
Sbjct: 237 RCNIKLELEQANERECEVLRKIWSSAQGIESMLKIPLLGYKAAFPPRK 284
>3lke_A Enoyl-COA hydratase; nysgrc, target 11251J, structural genomics,
PSI-2, protein structure initiative; 1.70A {Bacillus
halodurans}
Length = 263
Score = 122 bits (309), Expect = 2e-33
Identities = 52/255 (20%), Positives = 86/255 (33%), Gaps = 59/255 (23%)
Query: 24 NITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQ-EGNFCSGFDLHELD 82
+ I+L+ P+K N ++ + +L E I+ ++T IL + F SG L +L
Sbjct: 13 DALYITLDYPEKKNGLDAELGTSLLEAIRAGNNETSIHSIILQSKHRAYFSSGPRLEDLL 72
Query: 83 ENPDTKLFDDFREFLQK--PA-------KKPIIAAITGYAVGQGLDLALWCDLRFVEENV 133
+ RE L K +A I GYA G G ++ L CD R
Sbjct: 73 ICASDQSDVRLREVLHVLNHCVLEIFTSPKVTVALINGYAYGGGFNMMLACDRRIALRRA 132
Query: 134 LMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQM 193
F + G+ P + L ++
Sbjct: 133 KFLE---NFHKM-------GI-------------------------SPDLGASYF-LPRI 156
Query: 194 IGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAM-----------TRAIQMSK 242
IG +TM+++ G+ T+ EAL GL ++ + E + AI +K
Sbjct: 157 IGYEQTMNLLLEGKLFTSEEALRLGLIQEICENKQELQERVKNYLKAVSEGYVPAIAATK 216
Query: 243 --LSQSMLADRATVL 255
L + L
Sbjct: 217 KLLKGKAAEELKQQL 231
>3gow_A PAAG, probable enoyl-COA hydratase; the spiral fold, the crotonase
superfamily, lyase; 1.85A {Thermus thermophilus HB8}
PDB: 3hrx_A
Length = 254
Score = 121 bits (307), Expect = 3e-33
Identities = 58/252 (23%), Positives = 101/252 (40%), Gaps = 60/252 (23%)
Query: 24 NITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDE 83
+ +++LNRP+K+NAI + LDAL +K E+D E +L G F +G DL E +
Sbjct: 9 GVLVLTLNRPEKLNAITGELLDALYAALKEGEEDREVRALLLTGAGRAFSAGQDLTEFGD 68
Query: 84 NPDTKLFDDFREFLQKPAK------KPIIAAITGYAVGQGLDLALWCDLRFVEEN--VLM 135
++ + + KP++ A+ G A G G+ LALW DLR
Sbjct: 69 RKPD--YEAHLRRYNRVVEALSGLEKPLVVAVNGVAAGAGMSLALWGDLRLAAVGASFTT 126
Query: 136 GFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIG 195
F G+ +P ++ L +++G
Sbjct: 127 AFVRI------------GL-------------------------VPDSGLSFL-LPRLVG 148
Query: 196 TSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAM----------TRAIQMSK--L 243
++ +++ L ++A EAL GL +++V + EA+ TRA ++K L
Sbjct: 149 LAKAQELLLLSPRLSAEEALALGLVHRVVPAEKLMEEALSLAKELAQGPTRAYALTKKLL 208
Query: 244 SQSMLADRATVL 255
++ L
Sbjct: 209 LETYRLSLTEAL 220
>3p5m_A Enoyl-COA hydratase/isomerase; seattle structural genomics center
for infectious disease, S coenzyme A, tuberculosis;
2.05A {Mycobacterium avium}
Length = 255
Score = 121 bits (307), Expect = 3e-33
Identities = 57/245 (23%), Positives = 87/245 (35%), Gaps = 53/245 (21%)
Query: 25 ITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDEN 84
+ I L+RP+K+NA++ L+ L +I+ E D +L G FCSG DL D
Sbjct: 16 VLRIRLDRPEKLNAVDTPMLEELSVHIRDAEADESVRAVLLTGAGRAFCSGGDLTGGDTA 75
Query: 85 PDTKLFDDFREFLQKPAKKPIIAAITGYAVGQGLDLALWCDLRFVEENV--LMGFYNRRF 142
+ + KP+IA + G AVG G LAL CDL + F
Sbjct: 76 GAADAANRVVRAITS-LPKPVIAGVHGAAVGFGCSLALACDLVVAAPASYFQLAFTRV-- 132
Query: 143 VYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDM 202
G+ +P + L +IG +RT M
Sbjct: 133 ----------GL-------------------------MPDGGASAL-LPLLIGRARTSRM 156
Query: 203 ISLGRHITAREALDWGLCNKMVNCGTAVGEAM----------TRAIQMSK--LSQSMLAD 250
I+A A +WG+ + + + T A +K L+ + LA+
Sbjct: 157 AMTAEKISAATAFEWGMISHITSADEYESVLTDVLRSVSGGPTLAFGWTKRALAAATLAE 216
Query: 251 RATVL 255
V
Sbjct: 217 LEPVQ 221
>3sll_A Probable enoyl-COA hydratase/isomerase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; 2.35A {Mycobacterium abscessus}
Length = 290
Score = 122 bits (308), Expect = 4e-33
Identities = 56/297 (18%), Positives = 100/297 (33%), Gaps = 80/297 (26%)
Query: 24 NITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDE 83
I L++LNRP+++NA+ + ++ + D + ++ G FCSG D
Sbjct: 33 EIALVTLNRPERMNAMAFDVMLPFKQMLVDISHDNDVRAVVITGAGKGFCSGADQKSAGP 92
Query: 84 NPDTKLFDD------FREFLQKPA------KKPIIAAITGYAVGQGLDLALWCDLRFVEE 131
P E L + +P+IAAI G A+G GL LAL CD+R +
Sbjct: 93 IPHIGGLTQPTIALRSMELLDEVILTLRRMHQPVIAAINGAAIGGGLCLALACDVRVASQ 152
Query: 132 NVLMGFYNRRFVYLKDSLLSSGVVLYALHVPR----TQLKHSLRDNLSRDLAIPTCDVTI 187
+ + G+ +
Sbjct: 153 DAYFRA---AGINN-------GL------TASELGLSY---------------------- 174
Query: 188 RRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAM----------TRA 237
L + IGTSR D++ GR + A EA GL ++ V + + E
Sbjct: 175 -LLPRAIGTSRASDIMLTGRDVDADEAERIGLVSRKVASESLLEECYAIGERIAGFSRPG 233
Query: 238 IQMSKLSQSMLADRATVLSECETCREEWMSERKHYIGISFELK--------FLQKKK 286
I+++K +++ + E+ + E + + +K+
Sbjct: 234 IELTK--RTI--WSGLDAASLESHMHQ---EGLGQLYVRLLTDNFEEATAARKEKRP 283
>3moy_A Probable enoyl-COA hydratase; ssgcid, seattle structural genomics
center for infectious DI enoyl COA, actinobacteria,
lyase; 1.50A {Mycobacterium smegmatis}
Length = 263
Score = 121 bits (305), Expect = 7e-33
Identities = 59/232 (25%), Positives = 97/232 (41%), Gaps = 41/232 (17%)
Query: 24 NITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDE 83
+ LI L+RPD +NA+N + + + F+ D E ++ G E F +G D+ E+
Sbjct: 19 GVGLIRLDRPDALNALNQTLEAEVLDAARDFDADLEIGAIVVTGSERAFAAGADIAEMVT 78
Query: 84 N--PDTKLFDDFREFLQ-KPAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNR 140
+ + + +KPI+AA+ GYA+G G +LA+ CDL + G
Sbjct: 79 LTPHQARERNLLSGWDSLTQVRKPIVAAVAGYALGGGCELAMLCDLVIAADTARFGQ--- 135
Query: 141 RFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTM 200
P L +P T R L + +G ++ M
Sbjct: 136 ---------------------PEITLG-----------ILPGLGGTQR-LTRAVGKAKAM 162
Query: 201 DMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQSMLADRA 252
D+ GR +TA EA GL +++V + EA+ A +++ S A RA
Sbjct: 163 DLCLTGRSLTAEEAERVGLVSRIVPAADLLDEALAVAQRIA--RMSRPAGRA 212
>2pbp_A Enoyl-COA hydratase subunit I; B-oxidation, structural genomics,
NPPSFA, nationa on protein structural and functional
analyses; 1.80A {Geobacillus kaustophilus} PDB: 2qq3_A
Length = 258
Score = 121 bits (305), Expect = 7e-33
Identities = 51/225 (22%), Positives = 99/225 (44%), Gaps = 39/225 (17%)
Query: 24 NITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDE 83
+ +I L RPD +NA++ + + + ++ F+ + + + +L G+ F +G D+ E+ +
Sbjct: 14 AVGIIELARPDVLNALSRQMVAEIVAAVEAFDRNEKVRVIVLTGRGRAFAAGADIQEMAK 73
Query: 84 N--PDTKLFDDFREFLQ-KPAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNR 140
+ + + F ++ + K P+IAA+ G A+G G +LAL CDL GF
Sbjct: 74 DDPIRLEWLNQFADWDRLSIVKTPMIAAVNGLALGGGFELALSCDLIVASSAAEFGF--- 130
Query: 141 RFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTM 200
P L +P T R L ++IG R +
Sbjct: 131 ---------------------PEVNLG-----------VMPGAGGTQR-LTKLIGPKRAL 157
Query: 201 DMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQ 245
+ + G ++A+EA G+ N++V+ + E M A ++++
Sbjct: 158 EWLWTGARMSAKEAEQLGIVNRVVSPELLMEETMRLAGRLAEQPP 202
>1pjh_A Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral fold,
inter-trimer contacts; 2.10A {Saccharomyces cerevisiae}
SCOP: c.14.1.3 PDB: 1hno_A 1k39_A* 1hnu_A
Length = 280
Score = 121 bits (305), Expect = 1e-32
Identities = 43/302 (14%), Positives = 87/302 (28%), Gaps = 76/302 (25%)
Query: 24 NITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHEL-- 81
+I L PD +NA+ + L E ++ + + + I+ F SG D +
Sbjct: 18 PFFIIHLINPDNLNALEGEDYIYLGELLELADRNRDVYFTIIQSSGRFFSSGADFKGIAK 77
Query: 82 -----DENPDTKLFDDFREFLQKPA---------KKPIIAAITGYAVGQGLDLALWCDLR 127
++ F+ + K +I + G A+G L CD+
Sbjct: 78 AQGDDTNKYPSETSKWVSNFVARNVYVTDAFIKHSKVLICCLNGPAIGLSAALVALCDIV 137
Query: 128 F-VEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVT 186
+ + + V + + F L G++ T
Sbjct: 138 YSINDKVYLLY---PFANL-------GLI-------------------------TEGGTT 162
Query: 187 IRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAM------------ 234
+ L GT+ T + + + + G +K N ++ EA
Sbjct: 163 V-SLPLKFGTNTTYECLMFNKPFKYDIMCENGFISKNFNMPSSNAEAFNAKVLEELREKV 221
Query: 235 ----TRAIQMSK--LSQSMLADRATVLS-ECETCREEWMSERKHYIGISFELKFLQKKKK 287
+ K L + + S E + W+ + K++K
Sbjct: 222 KGLYLPSCLGMKKLLKSNHIDAFNKANSVEVNESLKYWVDGE-PLKRFR---QLGSKQRK 277
Query: 288 AK 289
+
Sbjct: 278 HR 279
>3hin_A Putative 3-hydroxybutyryl-COA dehydratase; structural genomics,
protein structure INI NEW YORK structural genomix
research consortium; 2.00A {Rhodopseudomonas palustris}
Length = 275
Score = 120 bits (303), Expect = 2e-32
Identities = 61/295 (20%), Positives = 108/295 (36%), Gaps = 69/295 (23%)
Query: 24 NITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDE 83
+ I LNRP K NA+N + AL++ + D + +++G +F +G DL EL E
Sbjct: 25 PVLTIGLNRPKKRNALNDGLMAALKDCLTDIPDQIRA--VVIHGIGDHFSAGLDLSELRE 82
Query: 84 ----------NPDTKLFDDFREFLQKPAKKPIIAAITGYAVGQGLDLALWCDLRFVEENV 133
++FD + + P+IAA+ G +G GL+LA +R E +
Sbjct: 83 RDATEGLVHSQTWHRVFDKIQYC-----RVPVIAALKGAVIGGGLELACAAHIRVAEASA 137
Query: 134 LMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQM 193
P ++R L ++
Sbjct: 138 YYAL------------------------PEGSRG-----------IFVGGGGSVR-LPRL 161
Query: 194 IGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQSMLADRA- 252
IG +R DM+ GR +A E + G ++ G+A +A+ +++ + L + A
Sbjct: 162 IGVARMADMMLTGRVYSAAEGVVHGFSQYLIENGSAYDKALELGNRVA--QNAPLTNFAV 219
Query: 253 --TVLSECETCREEWMS-ERKHYIGISFELK--------FLQKKK-KAKNGHLVH 295
+ E + + E ++ + FL K K + GH H
Sbjct: 220 LQALPMIAEANPQTGLLMESLMA-TVAQSDQEAKTRIRAFLDHKTAKVREGHHHH 273
>1mj3_A Enoyl-COA hydratase, mitochondrial; homohexamer, lyase; HET: HXC;
2.10A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2dub_A*
1dub_A* 1ey3_A* 2hw5_A*
Length = 260
Score = 119 bits (302), Expect = 2e-32
Identities = 61/225 (27%), Positives = 97/225 (43%), Gaps = 39/225 (17%)
Query: 24 NITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHEL-D 82
++ LI LNRP +NA+ ++ L + ++ FE+D +L G E F +G D+ E+ +
Sbjct: 16 SVGLIQLNRPKALNALCNGLIEELNQALETFEEDPAVGAIVLTGGEKAFAAGADIKEMQN 75
Query: 83 ENPDTKLFDDFREFLQKPA--KKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNR 140
F KKP+IAA+ GYA+G G +LA+ CD+ + E G
Sbjct: 76 RTFQDCYSGKFLSHWDHITRIKKPVIAAVNGYALGGGCELAMMCDIIYAGEKAQFGQ--- 132
Query: 141 RFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTM 200
P L IP T R L + +G S M
Sbjct: 133 ---------------------PEILLG-----------TIPGAGGTQR-LTRAVGKSLAM 159
Query: 201 DMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQ 245
+M+ G I+A++A GL +K+ T V EA+ A +++ S+
Sbjct: 160 EMVLTGDRISAQDAKQAGLVSKIFPVETLVEEAIQCAEKIANNSK 204
>1hzd_A AUH, AU-binding protein/enoyl-COA hydratase; RNA-binding
protein,enoyl-COA hydratase, riken structural
genomics/proteomics initiative, RSGI; 2.20A {Homo
sapiens} SCOP: c.14.1.3 PDB: 2zqq_A 2zqr_A
Length = 272
Score = 120 bits (303), Expect = 2e-32
Identities = 56/237 (23%), Positives = 92/237 (38%), Gaps = 44/237 (18%)
Query: 24 NITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQ-EGNFCSGFDLHELD 82
I ++ +NR N+++ + L + + + D + I+ + G FC+G DL E
Sbjct: 21 GIVVLGINRAYGKNSLSKNLIKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAGADLKERA 80
Query: 83 ENPDT---KLFDDFREFLQKPAK--KPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGF 137
+ + R + A P IAAI G A+G GL+LAL CD+R + MG
Sbjct: 81 KMSSSEVGPFVSKIRAVINDIANLPVPTIAAIDGLALGGGLELALACDIRVAASSAKMGL 140
Query: 138 YNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTS 197
T+L IP T R L + IG S
Sbjct: 141 ------------------------VETKLA-----------IIPGGGGTQR-LPRAIGMS 164
Query: 198 RTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSK--LSQSMLADRA 252
++I R + +EA GL + ++ A +A+ +++ L Q +A R
Sbjct: 165 LAKELIFSARVLDGKEAKAVGLISHVLEQNQEGDAAYRKALDLAREFLPQGPVAMRV 221
>3rrv_A Enoyl-COA hydratase/isomerase; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid; 2.45A {Mycobacterium avium subsp}
Length = 276
Score = 120 bits (303), Expect = 2e-32
Identities = 48/239 (20%), Positives = 83/239 (34%), Gaps = 51/239 (21%)
Query: 24 NITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDE 83
+ +I+LNRPD +N++N L +R DD + A++ G F +G D L E
Sbjct: 37 ALRIITLNRPDSLNSVNDDLHVGLARLWQRLTDDPTARAAVITGAGRAFSAGGDFGYLKE 96
Query: 84 -NPDTKLFDDFREFLQKPA------KKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMG 136
+ D L ++ + P++AA+ G AVG G L D+ ++ EN +
Sbjct: 97 LSADADLRAKTIRDGREIVLGMARCRIPVVAAVNGPAVGLGCSLVALSDIVYIAENAYLA 156
Query: 137 FYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGT 196
V + G+ + + I
Sbjct: 157 D---PHVQV-------GL-------------------------VAADGGPLT-WPLHISL 180
Query: 197 SRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQM-SKL-SQSMLADRAT 253
+ G I+A+ A++ GL N + + AI K+ A +T
Sbjct: 181 LLAKEYALTGTRISAQRAVELGLANH------VADDPVAEAIACAKKILELPQQAVEST 233
>1szo_A 6-oxocamphor hydrolase; enzyme-product complex; HET: CAX; 1.90A
{Rhodococcus SP} SCOP: c.14.1.3 PDB: 1o8u_A
Length = 257
Score = 119 bits (301), Expect = 2e-32
Identities = 37/250 (14%), Positives = 79/250 (31%), Gaps = 53/250 (21%)
Query: 25 ITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDEN 84
+ L++++ K D L D E+ + IL G +FC+ D +
Sbjct: 26 VLLVTVHTEGKSLVWTSTAHDELAYCFHDIACDRENKVVILTGTGPSFCNEIDFTSFNLG 85
Query: 85 PDTKLFDDFREFLQKPAK-----KPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYN 139
+ E + P+IAA+ G ++ + D+ E+ +
Sbjct: 86 TPHDWDEIIFEGQRLLNNLLSIEVPVIAAVNGPVTN-APEIPVMSDIVLAAESATFQ--D 142
Query: 140 RRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRT 199
G+ +P + ++G++R
Sbjct: 143 GPHFPS-------GI-------------------------VPGDGAHV-VWPHVLGSNRG 169
Query: 200 MDMISLGRHITAREALDWGLCNKMVNCGTAVGEAM----------TRAIQMSK--LSQSM 247
+ G+ + AR ALD+G N++++ + A A + ++ L++ +
Sbjct: 170 RYFLLTGQELDARTALDYGAVNEVLSEQELLPRAWELARGIAEKPLLARRYARKVLTRQL 229
Query: 248 LADRATVLSE 257
LS
Sbjct: 230 RRVMEADLSL 239
>3h81_A Enoyl-COA hydratase ECHA8; niaid, decode, infectious disease, MPCS,
fatty acid metaboli metabolism, lyase, structural
genomics; 1.80A {Mycobacterium tuberculosis} PDB:
3q0j_A* 3pzk_A 3q0g_A*
Length = 278
Score = 119 bits (302), Expect = 3e-32
Identities = 58/225 (25%), Positives = 95/225 (42%), Gaps = 39/225 (17%)
Query: 24 NITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHEL-D 82
+ +I+LNRP +NA+N + ++ + +DD + I+ G F +G D+ E+ D
Sbjct: 34 RVGIITLNRPQALNALNSQVMNEVTSAATELDDDPDIGAIIITGSAKAFAAGADIKEMAD 93
Query: 83 ENPDTKLFDDFREFLQKPA--KKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNR 140
DF K A + P IAA+ GYA+G G +LA+ CD+ + G
Sbjct: 94 LTFADAFTADFFATWGKLAAVRTPTIAAVAGYALGGGCELAMMCDVLIAADTAKFGQ--- 150
Query: 141 RFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTM 200
P +L +P + R L + IG ++ M
Sbjct: 151 ---------------------PEIKLG-----------VLPGMGGSQR-LTRAIGKAKAM 177
Query: 201 DMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQ 245
D+I GR + A EA GL +++V + EA A +S++S
Sbjct: 178 DLILTGRTMDAAEAERSGLVSRVVPADDLLTEARATATTISQMSA 222
>1ef8_A Methylmalonyl COA decarboxylase; lyase; 1.85A {Escherichia coli}
SCOP: c.14.1.3 PDB: 1ef9_A*
Length = 261
Score = 119 bits (300), Expect = 4e-32
Identities = 45/237 (18%), Positives = 73/237 (30%), Gaps = 49/237 (20%)
Query: 24 NITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGN--FCSGFDLHEL 81
+ +I N K+NA++ +D L + + E IL G+ F +G D+HEL
Sbjct: 13 KVAVIEFNYGRKLNALSKVFIDDLMQALSDLNRP-EIRCIILRAPSGSKVFSAGHDIHEL 71
Query: 82 DENP--DTKLFDDFREFLQKPA--KKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGF 137
D R+ + KPII+ + G G ++ + DL
Sbjct: 72 PSGGRDPLSYDDPLRQITRMIQKFPKPIISMVEGSVWGGAFEMIMSSDLIIAASTSTFSM 131
Query: 138 YNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTS 197
L L + G
Sbjct: 132 ------------------------TPVNLG-----------VPYNLVGIHN-LTRDAGFH 155
Query: 198 RTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSK--LSQSMLADRA 252
++I ITA+ AL G+ N +V V E +QM+ ++ LA
Sbjct: 156 IVKELIFTASPITAQRALAVGILNHVV----EVEELEDFTLQMAHHISEKAPLAIAV 208
>3pea_A Enoyl-COA hydratase/isomerase family protein; structural genomics,
center for structural genomics of infec diseases, csgid;
HET: FLC PG4; 1.82A {Bacillus anthracis}
Length = 261
Score = 118 bits (299), Expect = 5e-32
Identities = 55/228 (24%), Positives = 93/228 (40%), Gaps = 43/228 (18%)
Query: 24 NITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDE 83
+I + +LN NA++ + + + E I + E D + +++G+ F +G D+ E
Sbjct: 15 HIAVATLNHA-PANAMSSQVMHDVTELIDQVEKDDNIRVVVIHGEGRFFSAGADIKEFTS 73
Query: 84 NPDTKLFDDFREFLQKP------AKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGF 137
+ K + + Q KP+IAAI G A+G GL+ A+ C +RF E+ +G
Sbjct: 74 VTEAKQATELAQLGQVTFERVEKCSKPVIAAIHGAALGGGLEFAMSCHMRFATESAKLGL 133
Query: 138 YNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTS 197
P L IP T R L + +G +
Sbjct: 134 ------------------------PELTLG-----------LIPGFAGTQR-LPRYVGKA 157
Query: 198 RTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQ 245
+ +M+ IT EAL WGL N + T + + + A Q++ S
Sbjct: 158 KACEMMLTSTPITGAEALKWGLVNGVFAEETFLDDTLKVAKQIAGKSP 205
>2j5i_A P-hydroxycinnamoyl COA hydratase/lyase; vanillin, aldolase,
crotonase, coenzyme-A; 1.8A {Pseudomonas fluorescens}
PDB: 2j5i_B 2vss_A* 2j5i_I 2vss_F* 2vsu_A* 2vss_E*
2vsu_F* 2vsu_E* 2vsu_C*
Length = 276
Score = 118 bits (299), Expect = 8e-32
Identities = 44/242 (18%), Positives = 87/242 (35%), Gaps = 52/242 (21%)
Query: 24 NITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDE 83
I + LNRP+K NA++ + + ++ E D + + +L G + +G DL E
Sbjct: 18 GIAFVILNRPEKRNAMSPTLNREMIDVLETLEQDPAAGVLVLTGAGEAWTAGMDLKEYFR 77
Query: 84 NPDTKLFDDFREFLQKPA----------KKPIIAAITGYAVGQGLDLALWCDLRFVEENV 133
D + ++ + KP IA + G+ G G + CDL +
Sbjct: 78 EVDAGPEILQEKIRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFSPLVACDLAICADEA 137
Query: 134 LMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQM 193
G S + N P V+ + +
Sbjct: 138 TFGL--------------SEI------------------NWG---IPPGNLVS-KAMADT 161
Query: 194 IGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSK--LSQSMLADR 251
+G +++ I G+ ++A + GL N+ V + + I++++ L ++ + R
Sbjct: 162 VGHRQSLMYIMTGKTFGGQKAAEMGLVNESV----PLAQLREVTIELARNLLEKNPVVLR 217
Query: 252 AT 253
A
Sbjct: 218 AA 219
>2j5g_A ALR4455 protein; enzyme evolution, C-C bond hydrolase, hydrolase,
lyase, crotonase, biocatalysis, beta-diketone; 1.46A
{Anabaena SP} PDB: 2j5s_A* 2j5g_D
Length = 263
Score = 118 bits (298), Expect = 9e-32
Identities = 37/237 (15%), Positives = 79/237 (33%), Gaps = 48/237 (20%)
Query: 25 ITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDEN 84
I + ++ KT + D ++ + IL G + + D L +
Sbjct: 34 ILEVRMHTNGSSLVFTGKTHREFPDAFYDISRDRDNRVVILTGSGDAWMAEIDFPSLGDV 93
Query: 85 PDTKLFDDFREFLQKPA------KKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFY 138
+ + +D +K + P+I+A+ G A+ + L D+ EN + F
Sbjct: 94 TNPREWDKTYWEGKKVLQNLLDIEVPVISAVNGAALLHS-EYILTTDIILASENTV--FQ 150
Query: 139 NRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSR 198
+ + G+ +P V I +G R
Sbjct: 151 DMPHLNA-------GI-------------------------VPGDGVHI-LWPLALGLYR 177
Query: 199 TMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSK--LSQSMLADRAT 253
+ +TA++A + + ++++ + M RA ++++ Q L R T
Sbjct: 178 GRYFLFTQEKLTAQQAYELNVVHEVL----PQSKLMERAWEIARTLAKQPTLNLRYT 230
>3kqf_A Enoyl-COA hydratase/isomerase family protein; IDP02329, structural
genomic for structural genomics of infectious diseases,
csgid; HET: MSE; 1.80A {Bacillus anthracis}
Length = 265
Score = 117 bits (297), Expect = 1e-31
Identities = 64/239 (26%), Positives = 102/239 (42%), Gaps = 52/239 (21%)
Query: 24 NITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQ-EGNFCSGFDLHELD 82
++ ISLNR + N+++L L+ LQ + + ++ + + IL G E FC+G DL E
Sbjct: 18 HVVKISLNRERQANSLSLALLEELQNILTQINEEANTRVVILTGAGEKAFCAGADLKERA 77
Query: 83 ENPDT-------KLFDDFREFLQKPAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLM 135
+ + Q P +P+IAAI G A+G G +L+L CD R E+ +
Sbjct: 78 GMNEEQVRHAVSMIRTTMEMVEQLP--QPVIAAINGIALGGGTELSLACDFRIAAESASL 135
Query: 136 GFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIG 195
G T L IP T R L ++IG
Sbjct: 136 GL------------------------TETTLA-----------IIPGAGGTQR-LPRLIG 159
Query: 196 TSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSK--LSQSMLADRA 252
R ++I GR I+A+EA ++GL +V V +AI++++ S +A R
Sbjct: 160 VGRAKELIYTGRRISAQEAKEYGLVEFVV----PVHLLEEKAIEIAEKIASNGPIAVRL 214
>3t3w_A Probable enoyl-COA hydratase; ssgcid, structural genomics, seattle
ST genomics center for infectious disease, lyase; 1.80A
{Mycobacterium thermoresistibile} PDB: 3ome_A
Length = 279
Score = 118 bits (297), Expect = 1e-31
Identities = 49/239 (20%), Positives = 77/239 (32%), Gaps = 50/239 (20%)
Query: 25 ITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDEN 84
I I+LNRP+ NA N + LD L R +D + + +L +F +G DL
Sbjct: 30 IATITLNRPEAANAQNPELLDELDAAWTRAAEDNDVSVIVLRANGKHFSAGHDLRGGGPV 89
Query: 85 PDTKLFDDFREFLQKPA----------KKPIIAAITGYAVGQGLDLALWCDLRFVEENVL 134
PD + + KP IAA+ G + GL L CDL E+ L
Sbjct: 90 PDKLTLEFIYAHESRRYLEYSLRWRNVPKPSIAAVQGRCISGGLLLCWPCDLIIAAEDAL 149
Query: 135 MGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMI 194
D ++ + +
Sbjct: 150 FS----------DPVVLMDIGGVE-----YH-----------------------GHTWEL 171
Query: 195 GTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQSMLADRAT 253
G + +++ GR +TA E G+ N++V E A ++ A R
Sbjct: 172 GPRKAKEILFTGRAMTAEEVAQTGMVNRVVPRDRLDAETRALAGEI--AKMPPFALRQA 228
>4di1_A Enoyl-COA hydratase ECHA17; structural genomics, seattle structural
genomics center for infectious disease, ssgcid,
tuberculosis, ortholog; 2.25A {Mycobacterium marinum}
Length = 277
Score = 117 bits (296), Expect = 2e-31
Identities = 54/234 (23%), Positives = 82/234 (35%), Gaps = 44/234 (18%)
Query: 24 NITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDE 83
+ + ++RP NA+ + + + +L+G F +G D+ EL
Sbjct: 33 GLATLVVSRPPT-NAMTRQVYREIVAAADELGRRDDIGAVVLFGGHEIFSAGDDMPELRT 91
Query: 84 N--PDTKLFD-DFREFLQKPA--KKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFY 138
P+ E + A KP +AA+TGYA+G GL LAL D R +NV G
Sbjct: 92 LNAPEADTAARVRLEAIDAVAAIPKPTVAAVTGYALGAGLTLALAADWRVSGDNVKFGA- 150
Query: 139 NRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSR 198
IP R L +++G+SR
Sbjct: 151 -----------------------TEILAG-----------LIPGGGGMGR-LTRVVGSSR 175
Query: 199 TMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQSMLADRA 252
+++ GR A EAL GL + MV A+ A + A A
Sbjct: 176 AKELVFSGRFFDAEEALALGLIDDMVAPDDVYDSAVAWARRYL--ECPPRALAA 227
>3qre_A Enoyl-COA hydratase, ECHA12_1; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, tuberculosis; 2.40A {Mycobacterium marinum M}
Length = 298
Score = 117 bits (295), Expect = 5e-31
Identities = 53/258 (20%), Positives = 86/258 (33%), Gaps = 64/258 (24%)
Query: 25 ITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDEN 84
+ +I+ NR D++NA I R E D + +L G+ FC+G L D
Sbjct: 40 VAIITFNRADRLNAWGPDLAAGFYAAIDRAEADPGIRVIVLTGRGRGFCAGAYLGSADAA 99
Query: 85 PD-------TKLFDDFREFLQKPA------KKPIIAAITGYAVGQGLDLALWCDLRFVEE 131
K + ++P +KP+IAAI G VG GL AL CD+RF
Sbjct: 100 AGYDKTMAKAKDANLADLVGERPPHFVTMLRKPVIAAINGPCVGIGLTQALMCDVRFAAA 159
Query: 132 NVLMGF-YNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRL 190
+ RR G+ I ++ L
Sbjct: 160 GAKFAAVFARR-----------GL-------------------------IAEFGISW-IL 182
Query: 191 GQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAM-----------TRAIQ 239
++ + +D++ GR A EA GL ++V + A+ ++
Sbjct: 183 PRLTSWAVALDLLLSGRTFLAEEAAQLGLVKEVVTPEQLMPRALEYAEDIARYCSPSSMA 242
Query: 240 MSK--LSQSMLADRATVL 255
+ K + D
Sbjct: 243 VIKRQVYGDATRDVVEAT 260
>3qk8_A Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SBRI, UW, emerald
biostructures, structu genomics; 1.60A {Mycobacterium
marinum M} PDB: 3q1t_A
Length = 272
Score = 116 bits (292), Expect = 6e-31
Identities = 39/235 (16%), Positives = 77/235 (32%), Gaps = 54/235 (22%)
Query: 25 ITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDEN 84
+ + L+ P +N++ + L + + D + + ++ G+ F SG +DE
Sbjct: 24 VLNLVLDSPG-LNSVGPQMHRDLADVWPVIDRDPDVRVVLVRGEGKAFSSGGSFELIDET 82
Query: 85 PDT-----KLFDDFREFLQKPAK--KPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGF 137
++ + R+ + KP+++AI G AVG GL +AL D+ +
Sbjct: 83 IGDYEGRIRIMREARDLVLNLVNLDKPVVSAIRGPAVGAGLVVALLADISVASATAKIID 142
Query: 138 YNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTS 197
L GV I ++G +
Sbjct: 143 ---GHTKL-------GV-------------------------AAGDHAAI-CWPLLVGMA 166
Query: 198 RTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAM----------TRAIQMSK 242
+ + ++ EA GL + V+ + A AI+ +K
Sbjct: 167 KAKYYLLTCETLSGEEAERIGLVSTCVDDDEVLPTATRLAENLAQGAQNAIRWTK 221
>1wz8_A Enoyl-COA hydratase; lyase, crotonase, hexamer, structural
genomics, riken S genomics/proteomics initiative, RSGI;
1.80A {Thermus thermophilus} SCOP: c.14.1.3
Length = 264
Score = 115 bits (291), Expect = 1e-30
Identities = 46/257 (17%), Positives = 83/257 (32%), Gaps = 59/257 (22%)
Query: 22 ILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHEL 81
+L IT R +K+NA+ L + E +L G+ G F +G +
Sbjct: 21 VLEITF----RGEKLNAMPPALHRGLARVWRDLEAVEGVRAVLLRGEGGVFSAGGSFGLI 76
Query: 82 DENPDT-----KLFDDFREFLQKPAK--KPIIAAITGYAVGQGLDLALWCDLRFVEENVL 134
+E + ++F + R+ + P +P++AA+ AVG GL LAL D+ V +
Sbjct: 77 EEMRASHEALLRVFWEARDLVLGPLNFPRPVVAAVEKVAVGAGLALALAADIAVVGKGTR 136
Query: 135 MGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMI 194
+ + L GV + ++
Sbjct: 137 LLD---GHLRL-------GV-------------------------AAGDHAVL-LWPLLV 160
Query: 195 GTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAM----------TRAIQMSK-- 242
G ++ + L +T EA GL V +A+ A+ +K
Sbjct: 161 GMAKAKYHLLLNEPLTGEEAERLGLVALAVEDEKVYEKALEVAERLAQGPKEALHHTKHA 220
Query: 243 LSQSMLADRATVLSECE 259
L+ +
Sbjct: 221 LNHWYRSFLPHFELSLA 237
>3l3s_A Enoyl-COA hydratase/isomerase family protein; crotonase
superfamily, dimer of trimers, PSI-2, NYSGXRC,
structural genomics; 2.32A {Ruegeria pomeroyi}
Length = 263
Score = 111 bits (279), Expect = 4e-29
Identities = 41/237 (17%), Positives = 75/237 (31%), Gaps = 49/237 (20%)
Query: 24 NITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDE 83
+ ++L R + ++ + AL + ++R D + +++G FC+G DL E+
Sbjct: 16 GVLTLTLGRAPA-HPLSRAMIAALHDALRRAMGDDHVHVLVIHGPGRIFCAGHDLKEIGR 74
Query: 84 N--PDTKLFDDFREFLQKPAK---------KPIIAAITGYAVGQGLDLALWCDLRFVEEN 132
+ + + + + KP IA + G A GL L CDL +
Sbjct: 75 HRADPDEGRAFVTDLFEACSALMLDLAHCPKPTIALVEGIATAAGLQLMAACDLAYASPA 134
Query: 133 VLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQ 192
GV T + +
Sbjct: 135 ARFCL--------------PGV------------------QNG---GFCTTPAV--AVSR 157
Query: 193 MIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQSMLA 249
+IG +M G A AL GL N+++ A ++ +Q+ L
Sbjct: 158 VIGRRAVTEMALTGATYDADWALAAGLINRILPEAALATHVADLAGALAARNQAPLR 214
>1sg4_A 3,2-trans-enoyl-COA isomerase, mitochondrial; crotonase fold; HET:
CO8; 1.30A {Homo sapiens} SCOP: c.14.1.3 PDB: 1xx4_A
Length = 260
Score = 110 bits (278), Expect = 6e-29
Identities = 44/241 (18%), Positives = 84/241 (34%), Gaps = 53/241 (21%)
Query: 24 NITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQ-EGNFCSGFDLHELD 82
+ ++ P +N+++L+ L L ++++ E+D IL G F +G DL E+
Sbjct: 14 GVAVMKFKNP-PVNSLSLEFLTELVISLEKLENDKSFRGVILTSDRPGVFSAGLDLTEM- 71
Query: 83 ENPDTKLFDDFREFLQKP------AKKPIIAAITGYAVGQGLDLALWCDLRFVEEN--VL 134
+ + + +Q+ + +++AI G G +AL CD R + +N
Sbjct: 72 CGRSPAHYAGYWKAVQELWLRLYQSNLVLVSAINGACPAGGCLVALTCDYRILADNPRYC 131
Query: 135 MGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMI 194
+G TQL I + L I
Sbjct: 132 IGL------------------------NETQLG-----------IIAPFWLKDT-LENTI 155
Query: 195 GTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSK--LSQSMLADRA 252
G + LG EAL G+ +++V + + A+ ++ A +
Sbjct: 156 GHRAAERALQLGLLFPPAEALQVGIVDQVV----PEEQVQSTALSAIAQWMAIPDHARQL 211
Query: 253 T 253
T
Sbjct: 212 T 212
>2vx2_A Enoyl-COA hydratase domain-containing protein 3; isomerase, fatty
acid metabolism, transit peptide, lipid Met crontonase,
mitochondrion, CAsp; 2.3A {Homo sapiens}
Length = 287
Score = 110 bits (276), Expect = 2e-28
Identities = 52/233 (22%), Positives = 87/233 (37%), Gaps = 45/233 (19%)
Query: 24 NITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDE 83
I I L+ P K N ++L L +LQ +I D + + I+ + F SG DL EL E
Sbjct: 42 GIRNIVLSNPKKRNTLSLAMLKSLQSDILHDADSNDLKVIIISAEGPVFSSGHDLKELTE 101
Query: 84 NPD----TKLFDDFREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGF 137
++F + + P+IA + G A G L CD+ +
Sbjct: 102 EQGRDYHAEVFQTCSKVMMHIRNHPVPVIAMVNGLATAAGCQLVASCDIAVASDKSSFA- 160
Query: 138 YNRRFVYLKDSLLSSGVVLYAL-HVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGT 196
+ GV + P L+R +
Sbjct: 161 -------------TPGVNVGLFCSTPGVA--------LAR----------------AVPR 183
Query: 197 SRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQSMLA 249
++M+ G I+A+EAL GL +K+V E M A +++ LS+ +++
Sbjct: 184 KVALEMLFTGEPISAQEALLHGLLSKVVPEAELQEETMRIARKIASLSRPVVS 236
>3njd_A Enoyl-COA hydratase; ssgcid, mycobacerium smegmatis, structu
genomics, seattle structural genomics center for
infectious lyase; 1.75A {Mycobacterium smegmatis} PDB:
3njb_A
Length = 333
Score = 108 bits (272), Expect = 1e-27
Identities = 47/261 (18%), Positives = 77/261 (29%), Gaps = 76/261 (29%)
Query: 25 ITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDEN 84
+ I+ NRP+K NAI T L ++R + D + + ++ G+ FC+GFDL E
Sbjct: 45 VARITFNRPEKGNAIVADTPLELSALVERADLDPDVHVILVSGRGEGFCAGFDLSAYAEG 104
Query: 85 PDTKLFDDFREFLQKPAK-----------------------------------KPIIAAI 109
+ E K KP + I
Sbjct: 105 SSSAGGGSPYEGTVLSGKTQALNHLPDEPWDPMVDYQMMSRFVRGFASLMHCDKPTVVKI 164
Query: 110 TGYAVGQGLDLALWCDLRFVEENVLMGF-YNRRFVYLKDSLLSSGVVLYALHVPRTQLKH 168
GY V G D+AL D + +G+ R V A
Sbjct: 165 HGYCVAGGTDIALHADQVIAAADAKIGYPPMRV-----------WGVPAAGLWAH----- 208
Query: 169 SLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGT 228
+G R ++ G IT +A +WGL + +
Sbjct: 209 ------------------------RLGDQRAKRLLFTGDCITGAQAAEWGLAVEAPDPAD 244
Query: 229 AVGEAMTRAIQMSKLSQSMLA 249
+++ + + L
Sbjct: 245 LDARTERLVERIAAMPVNQLI 265
>3m6n_A RPFF protein; enoyl-COA hydratase, lyase; 1.80A {Xanthomonas
campestris PV} PDB: 3m6m_A
Length = 305
Score = 108 bits (271), Expect = 1e-27
Identities = 44/277 (15%), Positives = 81/277 (29%), Gaps = 57/277 (20%)
Query: 24 NITLISLNRPDKIN----AINLKTLDALQENIKRFE-----DDTESPLAILYGQEGNFCS 74
++ I ++ IN + + +D + +P +L F
Sbjct: 41 DVYWIHMHADLAINPGRACFSTRLVDDITGYQTNLGQRLNTAGVLAPHVVLASDSDVFNL 100
Query: 75 GFDLHELDENPDTKLFDDFREFLQK------------PAKKPIIAAITGYAVGQGLDLAL 122
G DL + ++ Q+ A+ IA + G A+G G + AL
Sbjct: 101 GGDLALFCQLIREGDRARLLDYAQRCVRGVHAFHVGLGARAHSIALVQGNALGGGFEAAL 160
Query: 123 WCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPT 182
C EE V+MG P +L P
Sbjct: 161 SCHTIIAEEGVMMGL------------------------PEVLF------DL-----FPG 185
Query: 183 CDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSK 242
+ Q I ++ G +A + L GL +++V G V + +
Sbjct: 186 MGAYSF-MCQRISAHLAQKIMLEGNLYSAEQLLGMGLVDRVVPRGQGVAAVEQVIRESKR 244
Query: 243 LSQSMLADRATVLSECETCREEWMSERKHYIGISFEL 279
+ A + EE M + ++ + +L
Sbjct: 245 TPHAWAAMQQVREMTTAVPLEEMMRITEIWVDTAMQL 281
>3gkb_A Putative enoyl-COA hydratase; structural genomics, unknown
function, PSI-2, protein struct initiative; 1.80A
{Streptomyces avermitilis}
Length = 287
Score = 107 bits (269), Expect = 2e-27
Identities = 35/248 (14%), Positives = 68/248 (27%), Gaps = 61/248 (24%)
Query: 24 NITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQ-EGNFCSGFDLHELD 82
+ I L+ P +N I + L+ + DD+ + + F + D+ +
Sbjct: 18 GVARIILDNP-PVNVIGATMMRELRTVLTTLADDSSVRVIVFSSADPEFFLAHVDMRIGE 76
Query: 83 E---------------NPDTKLFDDFREFLQKPAKKPIIAAITGYAVGQGLDLALWCDLR 127
+ N + + R + I + G A G G + D+
Sbjct: 77 KMDALQELAASAPADVNVFQAVGELIRHQ-----PQVTIVKLAGKARGGGAEFVAAADMA 131
Query: 128 FV-EENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVT 186
F E +G + IP T
Sbjct: 132 FAAAETAGLGQ------------------------IEALMG-----------IIPGGGGT 156
Query: 187 IRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQS 246
L +G +R ++++ A A +G N+ + A ++ L
Sbjct: 157 QY-LRGRVGRNRALEVVLTADLFDAETAASYGWINRALPADELDEYVDRVARNIAALPDG 215
Query: 247 --MLADRA 252
A R+
Sbjct: 216 VIEAAKRS 223
>3myb_A Enoyl-COA hydratase; ssgcid, struct genomics, seattle structural
genomics center for infectious lyase; 1.55A
{Mycobacterium smegmatis}
Length = 286
Score = 106 bits (266), Expect = 5e-27
Identities = 46/233 (19%), Positives = 76/233 (32%), Gaps = 45/233 (19%)
Query: 24 NITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDE 83
+ ++LNRP NA++ L AL E +D +L FC+G DL E+
Sbjct: 35 GVVTLTLNRPQAFNALSEAMLAALGEAFGTLAEDESVRAVVLAASGKAFCAGHDLKEMRA 94
Query: 84 NPDTKLFDDFREFLQKP------AKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGF 137
P + ++ P+IA + G A G L CDL +
Sbjct: 95 EPSREYYEKLFARCTDVMLAIQRLPAPVIARVHGIATAAGCQLVAMCDLAVATRDARFAV 154
Query: 138 YNRRFVYLKDSLLSSGVVLYAL-HVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGT 196
SG+ + P LSR +G
Sbjct: 155 --------------SGINVGLFCSTPGVA--------LSR----------------NVGR 176
Query: 197 SRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQSMLA 249
+M+ G ++A +A GL N++V E ++ ++ +A
Sbjct: 177 KAAFEMLVTGEFVSADDAKGLGLVNRVVAPKALDDEIEAMVSKIVAKPRAAVA 229
>1dci_A Dienoyl-COA isomerase; lyase; 1.50A {Rattus norvegicus} SCOP:
c.14.1.3 PDB: 2vre_A
Length = 275
Score = 105 bits (264), Expect = 9e-27
Identities = 58/249 (23%), Positives = 101/249 (40%), Gaps = 58/249 (23%)
Query: 24 NITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDE 83
++ + LNRP+K NA+N L E ++ D++ ++ G F SG DL ++
Sbjct: 13 HVLHVQLNRPEKRNAMNRAFWRELVECFQKISKDSDCRAVVVSGAGKMFTSGIDLMDMAS 72
Query: 84 NPDTKLFDD-------FREFLQKP---------AKKPIIAAITGYAVGQGLDLALWCDLR 127
+ DD R+ + + KP+IAAI G +G G+DL CD+R
Sbjct: 73 DILQPPGDDVARIAWYLRDLISRYQKTFTVIEKCPKPVIAAIHGGCIGGGVDLISACDIR 132
Query: 128 FVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDV-T 186
+ ++ V D+ + DV T
Sbjct: 133 YCTQDAFFQ------------------------VKEV------------DVGL-AADVGT 155
Query: 187 IRRLGQMIGT-SRTMDMISLGRHITAREALDWGLCNKMV-NCGTAVGEAMTRAIQMSKLS 244
++RL ++IG S ++ R + A EALD GL +++ + + A A +S S
Sbjct: 156 LQRLPKVIGNRSLVNELTFTARKMMADEALDSGLVSRVFPDKDVMLNAAFALAADIS--S 213
Query: 245 QSMLADRAT 253
+S +A + +
Sbjct: 214 KSPVAVQGS 222
>3t8b_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily,
lyase; 1.65A {Mycobacterium tuberculosis} PDB: 3t8a_A
1rjm_A* 1rjn_A* 1q52_A 1q51_A
Length = 334
Score = 105 bits (263), Expect = 2e-26
Identities = 43/255 (16%), Positives = 70/255 (27%), Gaps = 66/255 (25%)
Query: 25 ITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYG-------QEGNFCSGFD 77
++ NRP+ NA T+D L + + + +L G FCSG D
Sbjct: 67 TVRVAFNRPEVRNAFRPHTVDELYRVLDHARMSPDVGVVLLTGNGPSPKDGGWAFCSGGD 126
Query: 78 LHELDENPDTKLFDDFREFLQKPAK----------------KPIIAAITGYAVGQGLDLA 121
+ D + + K +I + G+A G G L
Sbjct: 127 QRIRGRSGYQYASGDTADTVDVARAGRLHILEVQRLIRFMPKVVICLVNGWAAGGGHSLH 186
Query: 122 LWCDLRFV-EENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAI 180
+ CDL E + D+
Sbjct: 187 VVCDLTLASREYARFKQ--------------TDA----------------------DVGS 210
Query: 181 PTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQM 240
L + +G ++ LGR TA + G N + E T +Q
Sbjct: 211 FDGGYGSAYLARQVGQKFAREIFFLGRTYTAEQMHQMGAVNAVA----EHAELETVGLQW 266
Query: 241 SK--LSQSMLADRAT 253
+ ++S A R
Sbjct: 267 AAEINAKSPQAQRML 281
>3i47_A Enoyl COA hydratase/isomerase (crotonase); structural genomics;
1.58A {Legionella pneumophila subsp}
Length = 268
Score = 101 bits (254), Expect = 2e-25
Identities = 39/240 (16%), Positives = 72/240 (30%), Gaps = 53/240 (22%)
Query: 25 ITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDEN 84
+ L+++NR K NA + + L ++ + +DT + +L +F +G DL +
Sbjct: 14 VGLLTMNRISKHNAFDNQLLTEMRIRLDSAINDTNVRVIVLKANGKHFSAGADLTWMQSM 73
Query: 85 PDTKLFDDFREFLQKPAK---------KPIIAAITGYAVGQGLDLALWCDLRFVEENVLM 135
+ ++ E KP IA + G A G G LA CD+ +
Sbjct: 74 ANFT-EEENLEDSLVLGNLMYSISQSPKPTIAMVQGAAFGGGAGLAAACDIAIASTSARF 132
Query: 136 GFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIG 195
F S V L + V + + IG
Sbjct: 133 CF--------------SEV----------------------KLGL-IPAVISPYVVRAIG 155
Query: 196 TSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSK--LSQSMLADRAT 253
+ A A L V + ++ + + + A + +
Sbjct: 156 ERAAKMLFMSAEVFDATRAYSLNLVQHCV----PDDTLLEFTLKYASQISNNAPEAVKNS 211
>3rsi_A Putative enoyl-COA hydratase/isomerase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; 2.00A {Mycobacterium abscessus}
Length = 265
Score = 98.4 bits (246), Expect = 2e-24
Identities = 28/119 (23%), Positives = 49/119 (41%), Gaps = 6/119 (5%)
Query: 24 NITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDE 83
+ ++++NRP + NA++ + + D AIL G +C G DL +
Sbjct: 18 PVVILTMNRPHRRNALSTNMVSQFAAAWDEIDHDDGIRAAILTGAGSAYCVGGDLSDGWM 77
Query: 84 NPDTKLFDDFREFLQK------PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMG 136
D + K KP+IAA+ G +G G ++ D+R +E+ G
Sbjct: 78 VRDGSAPPLDPATIGKGLLLSHTLTKPLIAAVNGACLGGGCEMLQQTDIRVSDEHATFG 136
Score = 57.1 bits (139), Expect = 1e-09
Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 189 RLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQSML 248
RL + I ++ M+MI G +TA EA +GL +V GTA+ +A + A ++ L
Sbjct: 153 RLKRQIPYTKAMEMILTGEPLTAFEAYHFGLVGHVVPAGTALDKARSLADRIV--RNGPL 210
Query: 249 ADRAT 253
A R
Sbjct: 211 AVRNA 215
>2w3p_A Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ring cleaving,
burkholderia xenovorans LB400 crotonase; 1.50A
{Burkholderia xenovorans}
Length = 556
Score = 101 bits (254), Expect = 3e-24
Identities = 41/303 (13%), Positives = 93/303 (30%), Gaps = 71/303 (23%)
Query: 24 NITLISLNRPD----------KINAINLKTLDALQENIKRFE-DDTESPLAILYGQ-EGN 71
+ + ++ + K+N+ +L L + I+R + E +L +
Sbjct: 30 PVATLGIDIAEDGGIRDGYKLKLNSYDLGVDIELHDAIQRIRFEHPEVRTVVLTSLKDRV 89
Query: 72 FCSGFDLHELDENPDTKLFDDFREFLQ----------KPAKKPIIAAITGYAVGQGLDLA 121
FCSG ++ L + +F +F + + +AA+ G G G +LA
Sbjct: 90 FCSGANIFMLGLS-THAWKVNFCKFTNETRNGLEDSSRHSGLKFLAAVNGACAGGGYELA 148
Query: 122 LWCDLRFV--EENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLA 179
L CD ++ + + + P L L
Sbjct: 149 LACDEIYLVDDRSSSVSL------------------------PEVPL-----------LG 173
Query: 180 IPTCDVTIRRLGQ--MIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRA 237
+ + R+ + R ++ + A W L +++V RA
Sbjct: 174 VLPGTGGLTRVTDKRKVRHDRADIFCTVVEGVRGERAKAWRLVDEVVKPNQFDQAIQARA 233
Query: 238 IQMSKLSQSMLADRATVLSECETCREEWMSERKHYIGISFELKFLQKKKKAKN-GHLVHR 296
++++ +QS A + + G++++ + + +
Sbjct: 234 LELA--AQSDRPAHAQGVP------LTRIERTDREDGLTYKTLDVTIDRAKRIATFTAKA 285
Query: 297 PFP 299
P
Sbjct: 286 PQT 288
>3hp0_A Putative polyketide biosynthesis enoyl-COA hydratase homolog PKSH;
polyketide synthase, enoyl COA hydratase,isomerase;
2.32A {Bacillus subtilis}
Length = 267
Score = 98.5 bits (246), Expect = 3e-24
Identities = 34/223 (15%), Positives = 69/223 (30%), Gaps = 49/223 (21%)
Query: 25 ITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDEN 84
+ I+ +RP+ N IN ++ + + + E T + + +L G FC G D E+ +
Sbjct: 17 VCYITFHRPEANNTINDTLIEECLQVLNQCETSTVTVV-VLEGLPEVFCFGADFQEIYQE 75
Query: 85 PDT---------KLFDDFREFLQKPAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLM 135
L+D + + P I+ + G GL D+ ++
Sbjct: 76 MKRGRKQASSQEPLYDLWMKLQTGP--YVTISHVRGKVNAGGLGFVSATDIAIADQTASF 133
Query: 136 GFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIG 195
+ G+ + L + IG
Sbjct: 134 SL---SELLF-------GLY---------------------------PACVLPFLIRRIG 156
Query: 196 TSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAI 238
+ M + + I+ +EA +WGL + + +
Sbjct: 157 RQKAHYMTLMTKPISVQEASEWGLIDAFDAESDVLLRKHLLRL 199
>3r9t_A ECHA1_1; ssgcid, seattle structural genomics center for infectious
DI enoyl-COA hydratase, lyase; 1.75A {Mycobacterium
avium subsp} PDB: 3r9s_A 3r0o_A
Length = 267
Score = 96.4 bits (241), Expect = 2e-23
Identities = 37/118 (31%), Positives = 60/118 (50%), Gaps = 5/118 (4%)
Query: 24 NITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQ-EGNFCSGFDLHELD 82
N+ +I++NRP+ NAIN + + ++ + D E +L G + +FC+G DL +
Sbjct: 18 NVMVITINRPEARNAINAAVSIGVGDALEEAQHDPEVRAVVLTGAGDKSFCAGADLKAIA 77
Query: 83 --ENPDTKLFDD--FREFLQKPAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMG 136
EN + F +++ KP IAA+ G A+G G +LAL DL +E G
Sbjct: 78 RRENLYHPDHPEWGFAGYVRHFIDKPTIAAVNGTALGGGTELALASDLVVADERAQFG 135
Score = 57.9 bits (141), Expect = 7e-10
Identities = 15/67 (22%), Positives = 32/67 (47%), Gaps = 6/67 (8%)
Query: 189 RLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSK--LSQS 246
R+ + + M ++ G ++A A DWGL N++V G + A+ ++ +
Sbjct: 152 RIAEQLPRKVAMRLLLTGEPLSAAAARDWGLINEVV----EAGSVLDAALALASAITVNA 207
Query: 247 MLADRAT 253
L+ +A+
Sbjct: 208 PLSVQAS 214
>3tlf_A Enoyl-COA hydratase/isomerase; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, otholog; 2.15A {Mycobacterium avium subsp}
Length = 274
Score = 95.7 bits (239), Expect = 3e-23
Identities = 29/125 (23%), Positives = 49/125 (39%), Gaps = 12/125 (9%)
Query: 24 NITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDE 83
+ I+LNRPD +NA++ + L+ E+D L ++ G FCSG D+ E+ E
Sbjct: 20 HTATITLNRPDALNALSPHMITELRAAYHEAENDDRVWLLVVTGTGRAFCSGADVKEIPE 79
Query: 84 NPDTKLFDDFREFLQKPA------------KKPIIAAITGYAVGQGLDLALWCDLRFVEE 131
+ + + KP++ A+ G G G+D D+ E
Sbjct: 80 DGKVIYERPYLSTYDQWEAPQEGTPPFRTMAKPVLTAVNGICCGAGMDWVTTTDIVIASE 139
Query: 132 NVLMG 136
Sbjct: 140 QATFF 144
Score = 52.6 bits (127), Expect = 4e-08
Identities = 17/69 (24%), Positives = 36/69 (52%), Gaps = 8/69 (11%)
Query: 189 RLGQMIGTSRTMDMISLGRH--ITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSK--LS 244
R+ +++ S + M +G+H ++A+ A + GL +++V + RA +++ S
Sbjct: 160 RVSRVLPRSIALRMALMGKHERMSAQRAYELGLISEIV----EHDRLLERAHEIADIVNS 215
Query: 245 QSMLADRAT 253
+ LA R T
Sbjct: 216 NAPLAVRGT 224
>1uiy_A Enoyl-COA hydratase; lyase, beta-oxidation, crotonase, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; 2.85A {Thermus thermophilus} SCOP:
c.14.1.3
Length = 253
Score = 94.9 bits (237), Expect = 4e-23
Identities = 52/242 (21%), Positives = 96/242 (39%), Gaps = 55/242 (22%)
Query: 24 NITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDE 83
++ ++ LN P++ N ++ + +L + + E D +L G+ F +G DL L+
Sbjct: 8 HVAVVFLNDPERRNPLSPEMALSLLQALDDLEADPGVRAVVLTGRGKAFSAGADLAFLER 67
Query: 84 NPDTKLFDDFREFLQKPA--------KKPIIAAITGYAVGQGLDLALWCDLRFVEENVLM 135
+ +++R L KP +AA+ G AV G LAL CDL ++E +
Sbjct: 68 VTELGAEENYRHSLSLMRLFHRVYTYPKPTVAAVNGPAVAGGAGLALACDLVVMDEEARL 127
Query: 136 GFYNRRFVYLKDSLLSSGVVLYALHVPR--TQLKHSLRDNLSRDLAIPTCDVTIRRLGQM 193
G+ V + G V + + L R A+ + +
Sbjct: 128 GY---TEVKI-------GF------VAALVSVI-------LVR--AVGE-----KAAKDL 157
Query: 194 IGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSK--LSQSMLADR 251
+ T R ++ AREA GL N++ G+A+ A +++ + + R
Sbjct: 158 LLTGRLVE---------AREAKALGLVNRIA----PPGKALEEAKALAEEVAKNAPTSLR 204
Query: 252 AT 253
T
Sbjct: 205 LT 206
>3oc7_A Enoyl-COA hydratase; seattle structural genomics center for
infectious disease, S non-pathogenic mycobacterium
species, ortholog; 1.50A {Mycobacterium avium}
Length = 267
Score = 91.5 bits (228), Expect = 8e-22
Identities = 35/229 (15%), Positives = 65/229 (28%), Gaps = 57/229 (24%)
Query: 25 ITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHEL--- 81
+ ++LN P NA++ + L + ++ D + +L G FC+G DL E
Sbjct: 21 VARLTLNSPHNRNALSTALVSQLHQGLRDASSDPAVRVVVLAHTGGTFCAGADLSEAGSG 80
Query: 82 -----DENPDTKLFDDFREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVL 134
+ + + ++ ++ P+IAAI G+ G L CD+
Sbjct: 81 GSPSSAYDMAVERAREMAALMRAIVESRLPVIAAIDGHVRAGGFGLVGACDIAVAGPRSS 140
Query: 135 MGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTI-----RR 189
+ + + P I +
Sbjct: 141 FAL--------------TEA------------RIGV---------APA---IISLTLLPK 162
Query: 190 LGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAI 238
L G AR A + GL A + + +
Sbjct: 163 LSA----RAAARYYLTGEKFDARRAEEIGLITMAAEDLDAAIDQLVTDV 207
>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway,
oxidoreductase, lipid metabolism, LY isomerase,
peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A
{Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A*
2x58_A*
Length = 742
Score = 90.0 bits (224), Expect = 4e-20
Identities = 53/220 (24%), Positives = 94/220 (42%), Gaps = 41/220 (18%)
Query: 24 NITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDE 83
++ +I L P +NA++ + ++ +++ D ++ G GNFC+G D+H
Sbjct: 30 SLAMIRLCNP-PVNAVSPTVIREVRNGLQKAGSDHTVKAIVICGANGNFCAGADIHGFSA 88
Query: 84 -NPDTKLFDDFREFLQKPAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRF 142
P L E +Q+ +KP++AAI G A+G GL+LAL C R +G
Sbjct: 89 FTPGLALGSLVDE-IQR-YQKPVLAAIQGVALGGGLELALGCHYRIANAKARVGL----- 141
Query: 143 VYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDM 202
P L +P T L +++G +D+
Sbjct: 142 -------------------PEVTLG-----------ILPGARGTQ-LLPRVVGVPVALDL 170
Query: 203 ISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSK 242
I+ G++++A EAL G+ + +V V EA+ A ++
Sbjct: 171 ITSGKYLSADEALRLGILDAVVK-SDPVEEAIKFAQKIID 209
>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric
complex, lyase, oxidoreductase/transferase complex,
lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP:
a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A*
1wdm_A* 2d3t_A*
Length = 715
Score = 89.6 bits (223), Expect = 4e-20
Identities = 42/210 (20%), Positives = 74/210 (35%), Gaps = 45/210 (21%)
Query: 24 NITLISLNRPD-KINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELD 82
I + + +N N TL+ L++ + + D I+ + F G D+ E
Sbjct: 16 GIVELKFDLKGESVNKFNRLTLNELRQAVDAIKADASVKGVIVSSGKDVFIVGADITEFV 75
Query: 83 ENPDTKLFDDFREFLQKPA--------KKPIIAAITGYAVGQGLDLALWCDLRFVEENVL 134
EN + L+ P +AAI G A+G GL++ L D R + ++
Sbjct: 76 ENFKLPDAELIAGNLEANKIFSDFEDLNVPTVAAINGIALGGGLEMCLAADFRVMADSAK 135
Query: 135 MGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMI 194
+G P +L P T+ RL ++I
Sbjct: 136 IGL------------------------PEVKLG-----------IYPGFGGTV-RLPRLI 159
Query: 195 GTSRTMDMISLGRHITAREALDWGLCNKMV 224
G ++ I+ G+ A +AL + +V
Sbjct: 160 GVDNAVEWIASGKENRAEDALKVSAVDAVV 189
>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase,
peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A
{Arabidopsis thaliana}
Length = 725
Score = 89.3 bits (222), Expect = 7e-20
Identities = 48/227 (21%), Positives = 86/227 (37%), Gaps = 49/227 (21%)
Query: 24 NITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDE 83
+ +I+L P +N+++ L L+ N + + ++ G +G F GFD+ E
Sbjct: 17 GVAVITLINP-PVNSLSFDVLYNLKSNYEEALSRNDVKAIVITGAKGRFSGGFDISGFGE 75
Query: 84 NPDTKLFDDFREFLQKPA--------KKPIIAAITGYAVGQGLDLALWCDLRFVEENVLM 135
+ + ++ +KP +AAI G A+G GL+LA+ C R +
Sbjct: 76 MQKGNVKEPKAGYISIDIITDLLEAARKPSVAAIDGLALGGGLELAMACHARISAPAAQL 135
Query: 136 GFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIG 195
G P QL IP T RL +++G
Sbjct: 136 GL------------------------PELQLG-----------VIPGFGGTQ-RLPRLVG 159
Query: 196 TSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSK 242
++ ++MI + + A E GL + +V E +T A + +
Sbjct: 160 LTKALEMILTSKPVKAEEGHSLGLIDAVV----PPAELVTTARRWAL 202
>2uzf_A Naphthoate synthase; lyase, menaquinone biosynthesis; HET: CAA;
2.9A {Staphylococcus aureus}
Length = 273
Score = 86.1 bits (214), Expect = 9e-20
Identities = 41/123 (33%), Positives = 59/123 (47%), Gaps = 13/123 (10%)
Query: 24 NITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGN--FCSGFDLHEL 81
I +++NRP+ NA KT+ + + R DD + +L G EG+ FCSG D +
Sbjct: 22 GIAKVTINRPEVRNAFTPKTVAEMIDAFSRARDDQNVSVIVLTG-EGDLAFCSGGDQKKR 80
Query: 82 --------DENPDTKLFDDFREFLQKPAKKPIIAAITGYAVGQGLDLALWCDLRFVEENV 133
D+ P + D R P KP+IA + GYAVG G L + CDL +N
Sbjct: 81 GHGGYVGEDQIPRLNVLDLQRLIRIIP--KPVIAMVKGYAVGGGNVLNVVCDLTIAADNA 138
Query: 134 LMG 136
+ G
Sbjct: 139 IFG 141
Score = 53.7 bits (130), Expect = 2e-08
Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 6/66 (9%)
Query: 189 RLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSK--LSQS 246
L +++G + ++ L R A+EALD GL N +V + + +Q K + S
Sbjct: 158 YLARIVGHKKAREIWYLCRQYNAQEALDMGLVNTVV----PLEKVEDETVQWCKEIMKHS 213
Query: 247 MLADRA 252
A R
Sbjct: 214 PTALRF 219
>2ppy_A Enoyl-COA hydratase; beta-oxidation, fatty acid metabol lyase,
structural genomics, NPPSFA; 2.16A {Geobacillus
kaustophilus}
Length = 265
Score = 85.6 bits (213), Expect = 1e-19
Identities = 32/115 (27%), Positives = 51/115 (44%), Gaps = 7/115 (6%)
Query: 24 NITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQ-EGNFCSGFDLHE-- 80
I I L+ K N+ +L+ I D + + I+ F +G D++
Sbjct: 18 GIAEIHLHIN-KSNSYDLEFYKEFNAAIDDIRFDPDIKVVIVMSDVPKFFSAGADINFLR 76
Query: 81 -LDENPDTKLFDDFREFLQKPAK--KPIIAAITGYAVGQGLDLALWCDLRFVEEN 132
D T+ E L K A+ + IA + G+ VG GL++AL CDLRF+ +
Sbjct: 77 SADPRFKTQFCLFCNETLDKIARSPQVYIACLEGHTVGGGLEMALACDLRFMGDE 131
Score = 57.5 bits (140), Expect = 8e-10
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 6/66 (9%)
Query: 189 RLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSK--LSQS 246
RL ++IG SR +DM G IT +EAL+ GL N++ E R + ++ + +
Sbjct: 153 RLARLIGYSRALDMNITGETITPQEALEIGLVNRVF----PQAETRERTREYARKLANSA 208
Query: 247 MLADRA 252
A
Sbjct: 209 TYAVSN 214
>3t89_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily,
lyase; 1.95A {Escherichia coli} PDB: 3t88_A 3h02_A
2iex_A
Length = 289
Score = 84.6 bits (210), Expect = 4e-19
Identities = 34/124 (27%), Positives = 52/124 (41%), Gaps = 14/124 (11%)
Query: 24 NITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGN--FCSGFDLHE- 80
I I++NRP NA T+ + + + D + IL G G+ FCSG D
Sbjct: 37 GIAKITINRPQVRNAFRPLTVKEMIQALADARYDDNIGVIILTG-AGDKAFCSGGDQKVR 95
Query: 81 --------LDENPDTKLFDDFREFLQKPAKKPIIAAITGYAVGQGLDLALWCDLRFVEEN 132
+ D R+ P KP++A + GY++G G L + CDL +N
Sbjct: 96 GDYGGYKDDSGVHHLNVLDFQRQIRTCP--KPVVAMVAGYSIGGGHVLHMMCDLTIAADN 153
Query: 133 VLMG 136
+ G
Sbjct: 154 AIFG 157
Score = 54.5 bits (132), Expect = 1e-08
Identities = 15/66 (22%), Positives = 31/66 (46%), Gaps = 6/66 (9%)
Query: 189 RLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSK--LSQS 246
+ +++G + ++ L R A++ALD GL N +V + + ++ + L S
Sbjct: 174 YMARIVGQKKAREIWFLCRQYDAKQALDMGLVNTVV----PLADLEKETVRWCREMLQNS 229
Query: 247 MLADRA 252
+A R
Sbjct: 230 PMALRC 235
>3h0u_A Putative enoyl-COA hydratase; structural genomics, isomerase,
PSI-2, protein structure initiative; 1.50A {Streptomyces
avermitilis}
Length = 289
Score = 84.2 bits (209), Expect = 6e-19
Identities = 26/123 (21%), Positives = 42/123 (34%), Gaps = 11/123 (8%)
Query: 24 NITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQ-EGNFCSGFDLHELD 82
+ + N P +N I + + L ++ T + I F D+ ++
Sbjct: 17 TVLSATFNAP-PMNLIGPEVVRDLVALLEELAHPTAPRVVIFDSADADFFFPHVDMTKVP 75
Query: 83 ENP--DTKLFDDFREFLQKP------AKKPIIAAITGYAVGQGLDLALWCDLRFV-EENV 133
E K L IA + G A G G + L CD+RF EN
Sbjct: 76 EYTAEAAKAGGPGDASLGMLFRKLSQLPAVTIAKLRGRARGAGSEFLLACDMRFASRENA 135
Query: 134 LMG 136
++G
Sbjct: 136 ILG 138
Score = 56.1 bits (136), Expect = 3e-09
Identities = 12/61 (19%), Positives = 22/61 (36%)
Query: 189 RLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQSML 248
L +++G R ++ + A A +G N+ V A +MS + L
Sbjct: 155 HLTRLLGRGRALEAVLTSSDFDADLAERYGWVNRAVPDAELDEFVAGIAARMSGFPRDAL 214
Query: 249 A 249
Sbjct: 215 I 215
>2np9_A DPGC; protein inhibitor complex, oxidoreductase; HET: YE1; 2.45A
{Streptomyces toyocaensis} PDB: 2pg8_A*
Length = 440
Score = 84.5 bits (209), Expect = 2e-18
Identities = 26/143 (18%), Positives = 51/143 (35%), Gaps = 30/143 (20%)
Query: 24 NITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGN---------FCS 74
+ +++ R D++NA + + +D ++ + D + +L G + F +
Sbjct: 176 GVARLTMCRDDRLNAEDGQQVDDMETAVDLALLDPGVRVGLLRGGVMSHPRYRGKRVFSA 235
Query: 75 GFDLHELDENPDTKLFDDFREFLQKPAK---------------------KPIIAAITGYA 113
G +L L + + + R L K KP +AA+ G+A
Sbjct: 236 GINLKYLSQGGISLVDFLMRRELGYIHKLVRGVLTNDDRPGWWHSPRIEKPWVAAVDGFA 295
Query: 114 VGQGLDLALWCDLRFVEENVLMG 136
+G G L L D +
Sbjct: 296 IGGGAQLLLVFDRVLASSDAYFS 318
Score = 56.4 bits (136), Expect = 3e-09
Identities = 16/85 (18%), Positives = 30/85 (35%), Gaps = 5/85 (5%)
Query: 189 RLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQSML 248
RLG+ G + +I GR I A+E L +++V ++ ++L
Sbjct: 334 RLGRFAGPRVSRQVILEGRRIWAKEPEARLLVDEVVEPDELDAAIERSLTRLD--GDAVL 391
Query: 249 ADRATV---LSECETCREEWMSERK 270
A+R + + R
Sbjct: 392 ANRRMLNLADESPDGFRAYMAEFAL 416
>4eml_A Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coenzyme A, lyase;
2.04A {Synechocystis SP}
Length = 275
Score = 80.3 bits (199), Expect = 1e-17
Identities = 37/125 (29%), Positives = 52/125 (41%), Gaps = 12/125 (9%)
Query: 24 NITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGN------FCSGFD 77
I I +NRP K NA +T+ L + +D + +L G + FCSG D
Sbjct: 19 GIAKIVINRPHKRNAFRPQTVFELYDAFCNAREDNRIGVVLLTGAGPHSDGKYAFCSGGD 78
Query: 78 LHELDEN--PDTKLFDDFREF-LQK---PAKKPIIAAITGYAVGQGLDLALWCDLRFVEE 131
E D + LQ+ K +IA + GYA+G G L L CDL +
Sbjct: 79 QSVRGEGGYIDDQGTPRLNVLDLQRLIRSMPKVVIALVAGYAIGGGHVLHLVCDLTIAAD 138
Query: 132 NVLMG 136
N + G
Sbjct: 139 NAIFG 143
Score = 54.5 bits (132), Expect = 1e-08
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 6/66 (9%)
Query: 189 RLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSK--LSQS 246
L +++G + ++ L R +A+EA G+ N +V V IQ +K LS+S
Sbjct: 160 YLARIVGQKKAREIWYLCRQYSAQEAERMGMVNTVV----PVDRLEEEGIQWAKEILSKS 215
Query: 247 MLADRA 252
LA R
Sbjct: 216 PLAIRC 221
>3ju1_A Enoyl-COA hydratase/isomerase family protein; alpha-beta structure,
structural genomics, PSI-2, protein ST initiative; HET:
MSE; 2.30A {Shewanella oneidensis}
Length = 407
Score = 69.0 bits (169), Expect = 2e-13
Identities = 25/137 (18%), Positives = 54/137 (39%), Gaps = 13/137 (9%)
Query: 13 LVSSVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGN- 71
+ ++ T + +++LN +NA++L + A+ + ++ D +L G
Sbjct: 40 VFQTLATASGKLVGVVTLNVEKALNALDLDMVRAMTVQLNLWKKDPLIACVVLDGSGEKA 99
Query: 72 FCSGFD---LHELDENPDTKLFDDFREFLQK---------PAKKPIIAAITGYAVGQGLD 119
FC+G D L+ ++ + + F ++ KP++ G +G GL
Sbjct: 100 FCAGGDVRALYHASVAAKGQVTEVAKVFFEEEYRLDYLLHTYGKPVLVWGDGIVMGGGLG 159
Query: 120 LALWCDLRFVEENVLMG 136
L + V E +
Sbjct: 160 LMAGASHKVVTETSRIA 176
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 67.6 bits (164), Expect = 1e-12
Identities = 51/309 (16%), Positives = 88/309 (28%), Gaps = 88/309 (28%)
Query: 35 KINAINLKTLDALQENIKRFEDD------TESPLAILYGQEGNFCSGFDLHELDE-NPDT 87
+ + D L F D+ + P +IL +E D H + + +
Sbjct: 10 ETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEE------ID-HIIMSKDAVS 62
Query: 88 KLFDDFREFLQKPAKKPIIAAITGYAVGQGLDLAL-WCDLRFVEENVLMGFYNRRFVYLK 146
F L K + + V + L + + E R ++ +
Sbjct: 63 GTLRLFWTLLSKQEE------MVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQR 116
Query: 147 DSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRT------- 199
D L + V +V R Q LR L P +V I G ++G+ +T
Sbjct: 117 DRLYNDNQVFAKYNVSRLQPYLKLRQALLEL--RPAKNVLID--G-VLGSGKTWVALDVC 171
Query: 200 --------MDM----ISLGRHITAREALD--WGLCNKMVNCGTAVGEAMTRAIQMSKLSQ 245
MD ++L + L+ L ++ T+ + +
Sbjct: 172 LSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKL------ 225
Query: 246 SMLADRATVLSECETCREEWMSERKHYIGISFELKFLQKKKKAKNGHLVHR--------- 296
R + L+ L K K +N LV
Sbjct: 226 ----------------RIHSIQAE---------LRRLLKSKPYENCLLVLLNVQNAKAWN 260
Query: 297 PFPI-CKIL 304
F + CKIL
Sbjct: 261 AFNLSCKIL 269
Score = 42.1 bits (98), Expect = 2e-04
Identities = 58/382 (15%), Positives = 119/382 (31%), Gaps = 107/382 (28%)
Query: 10 MLRLVSSVCTKKILNITLISLNRPDKINAIN--LKTLDALQENI-KRFEDDTESP----L 62
M + + S ++I +I + D ++ TL + QE + ++F ++ L
Sbjct: 41 MPKSILS--KEEIDHI----IMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFL 94
Query: 63 AILYGQEGNFCSG-FDLHELDENP---DTKLFDDF-----------REFLQ--KPAK--- 102
E S ++ + D ++F + R+ L +PAK
Sbjct: 95 MSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVL 154
Query: 103 --------KPIIAAIT--GYAVGQGLDLAL-WCDLRFV-EENVLMGFYNRRFVYLKDSLL 150
K +A Y V +D + W +L+ ++ + + +
Sbjct: 155 IDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWT 214
Query: 151 SSGVVLYALHVPRTQLKHSLRDNLS-----RDLAI--------------PTCD--VTIR- 188
S + + ++ LR L L + +C +T R
Sbjct: 215 SRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRF 274
Query: 189 -----RLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKL 243
L T ++D S+ +T E L K ++C + + +
Sbjct: 275 KQVTDFLSAATTTHISLDHHSMT--LTPDEVK--SLLLKYLDC--RPQDLPREVLTTNPR 328
Query: 244 SQSMLADRATVLSECETCR-EEWMSERKHY--------IGISFE-LKFLQKKKKAKNGHL 293
S++A+ + + + W KH I S L+ + +K
Sbjct: 329 RLSIIAES---IRD-GLATWDNW----KHVNCDKLTTIIESSLNVLEPAEYRKM------ 374
Query: 294 VHRPFPICKIL-ENSHIPSQEL 314
F + ++HIP+ L
Sbjct: 375 ----FDRLSVFPPSAHIPTILL 392
Score = 41.0 bits (95), Expect = 4e-04
Identities = 43/249 (17%), Positives = 85/249 (34%), Gaps = 49/249 (19%)
Query: 1 MTWVFYHRAMLRLVSSVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTES 60
+ + L+ K L+ L P ++ N + L + E+I+ ++
Sbjct: 294 HSMTLTPDEVKSLLL-----KYLDCRPQDL--PREVLTTNPRRLSIIAESIRDGLATWDN 346
Query: 61 PLAILYGQEGNFCSGFDLHELDENPDTKLFDDFREFLQKPAKKPIIAAITGYAVGQGLDL 120
+ + L+ L+ K+FD F P I + L L
Sbjct: 347 WKHVNCDKLTTIIESS-LNVLEPAEYRKMFDRLSVF---PPSAHIPTIL--------LSL 394
Query: 121 ALWCDLRFVE-ENVLMGFYNRRFV--YLKDSLLSSGVVLYALHVP-------RTQLKHSL 170
+W D+ + V+ + V K+S +S + ++++ L S+
Sbjct: 395 -IWFDVIKSDVMVVVNKLHKYSLVEKQPKESTIS----IPSIYLELKVKLENEYALHRSI 449
Query: 171 RD--NLSR-----DLAIPTCDVTI-RRLGQMIGTSRTMDMISLGRHITAREALD--WGLC 220
D N+ + DL P D +G + + ++L R + LD + L
Sbjct: 450 VDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVF----LDFRF-LE 504
Query: 221 NKMVNCGTA 229
K+ + TA
Sbjct: 505 QKIRHDSTA 513
>3bpt_A 3-hydroxyisobutyryl-COA hydrolase; coenzyme A,
beta-hydroxyisobutyryl acid, querceti structural
genomics consortium, SGC; HET: QUE; 1.50A {Homo sapiens}
Length = 363
Score = 65.8 bits (161), Expect = 2e-12
Identities = 38/136 (27%), Positives = 59/136 (43%), Gaps = 9/136 (6%)
Query: 10 MLRLVSSVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQE 69
M V K +I+LNRP +NA+ L + + +K++E D E+ L I+ G
Sbjct: 1 MTDAAEEVLLGKKGCTGVITLNRPKFLNALTLNMIRQIYPQLKKWEQDPETFLIIIKGAG 60
Query: 70 GN-FCSGFD---LHELDENPDTKLFDDFRE-----FLQKPAKKPIIAAITGYAVGQGLDL 120
G FC+G D + E ++ FRE +KP +A I G +G G+ L
Sbjct: 61 GKAFCAGGDIRVISEAEKAKQKIAPVFFREEYMLNNAVGSCQKPYVALIHGITMGGGVGL 120
Query: 121 ALWCDLRFVEENVLMG 136
++ R E L
Sbjct: 121 SVHGQFRVATEKCLFA 136
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 53.9 bits (129), Expect = 4e-08
Identities = 64/357 (17%), Positives = 98/357 (27%), Gaps = 129/357 (36%)
Query: 24 NI-TLI-SLNRPDKINAINLKTL-----DALQENIKRFEDDTESPL--------AILY-- 66
+I L L + + + K L A + F+ + S L A L
Sbjct: 100 DIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAI 159
Query: 67 --GQEGNFCSGFDLHELDENPDTKLFDDFREF-----------LQKPAKKPIIAAITGYA 113
GQ GN F+ EL + L+ + L + + + A
Sbjct: 160 FGGQ-GNTDDYFE--ELRD-----LYQTYHVLVGDLIKFSAETLSELIRTTLDAE---KV 208
Query: 114 VGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDN 173
QGL++ W L + YL +S L + QL H +
Sbjct: 209 FTQGLNILEW--LE--NPSNTPDKD-----YLLSIPIS--CPLIGV----IQLAHYV--- 250
Query: 174 LSRDLAIPTCDVTIRRLG--------QMIGTSRTMDMISLGRHITAR---EALDW----G 218
VT + LG + G + + +TA E W
Sbjct: 251 -----------VTAKLLGFTPGELRSYLKGATGHSQGL-----VTAVAIAETDSWESFFV 294
Query: 219 LCNKMVN----CGTAVGEAM-TRAIQMSKLSQS----------MLA----DRATVLSECE 259
K + G EA ++ S L S ML+ + V
Sbjct: 295 SVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVN 354
Query: 260 TCREEWMSERKHYIGIS-------F-------ELKFLQ---KKKKAKNGHLVHR-PF 298
+ K + IS L L +K KA +G R PF
Sbjct: 355 KTNSH-LPAGKQ-VEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPF 409
Score = 48.9 bits (116), Expect = 1e-06
Identities = 57/303 (18%), Positives = 99/303 (32%), Gaps = 91/303 (30%)
Query: 35 KINAI------NLKTLDALQE-------NIKRFEDDTESPLAILYGQEGN----FCSGFD 77
++ AI + L++ + + L+ L + F G +
Sbjct: 155 QLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLN 214
Query: 78 LHELDENPDTKLFDDFREFLQKPAKKPIIA--AITGYAV--------------------- 114
+ E ENP D+ L P P+I + Y V
Sbjct: 215 ILEWLENPSNTPDKDY--LLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATG 272
Query: 115 -GQGLDLAL-------WCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALH--VPRT 164
QGL A+ W E F+ + L GV + P T
Sbjct: 273 HSQGLVTAVAIAETDSW------ES-----FFVSVRKAIT-VLFFIGV---RCYEAYPNT 317
Query: 165 QLKHS-LRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMIS-LGRHITAREALDWGLCN- 221
L S L D+L + +P+ ++I L Q + D ++ H+ A + ++ L N
Sbjct: 318 SLPPSILEDSLENNEGVPSPMLSISNLTQ----EQVQDYVNKTNSHLPAGKQVEISLVNG 373
Query: 222 --KMVNCGTAVGEAMTRAIQMSKLSQSMLADRATVLSECETCREEWMSERKHYIGISFEL 279
+V G +++ L+ ++ +A S + R SERK + F
Sbjct: 374 AKNLVVSGPP--QSLYG------LNLTLRKAKAP--SGLDQSRIP-FSERK----LKFSN 418
Query: 280 KFL 282
+FL
Sbjct: 419 RFL 421
Score = 38.1 bits (88), Expect = 0.004
Identities = 48/319 (15%), Positives = 88/319 (27%), Gaps = 136/319 (42%)
Query: 10 M---LRLVSSVCTKKILN-------------ITLISLNRPDKI--------------NAI 39
M L S + + N I I +N P + N
Sbjct: 1631 MGMDLYKTSKAA-QDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYS 1689
Query: 40 NLK---TLDALQENIKRFEDDTESPLAILY-GQEGNFCSGFDLHELDENPDTKLFDDFRE 95
+ +D + K F++ E + + ++G L T +
Sbjct: 1690 AMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKG---------LLSA---T-------Q 1730
Query: 96 FLQKPAKKPIIAAITGYAVGQGLDLALWCDLR----FVEENVLMGFYNRRFVYLKDSL-- 149
F Q PA + + A + DL+ + G SL
Sbjct: 1731 FTQ-PA----LTLME---------KAAFEDLKSKGLIPADATFAGH----------SLGE 1766
Query: 150 ---LSS--GV-----VLYALHVPRTQLKHSL--RDNLSRD----LAIPTCDVTIRRLGQM 193
L+S V ++ + R RD L R +AI G++
Sbjct: 1767 YAALASLADVMSIESLVEVVFY-RGMTMQVAVPRDELGRSNYGMIAI--------NPGRV 1817
Query: 194 IGTSRTMDMISLGRHITAREALDWG-LC---NKMVNC--------GTAVG-EAMT----- 235
+ + +L +++ R G L N N G + +T
Sbjct: 1818 ---AASFSQEAL-QYVVERVGKRTGWLVEIVN--YNVENQQYVAAGDLRALDTVTNVLNF 1871
Query: 236 ---RAIQMSKLSQSMLADR 251
+ I + +L +S+ +
Sbjct: 1872 IKLQKIDIIELQKSLSLEE 1890
Score = 33.9 bits (77), Expect = 0.086
Identities = 10/35 (28%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Query: 150 LSSGVVLYALHVPRTQLKHS--LRDNLSRDLAIPT 182
LS G + + L VP + L++ ++ L PT
Sbjct: 11 LSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPT 45
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 38.4 bits (88), Expect = 0.001
Identities = 10/24 (41%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
Query: 42 KTLDALQENIKRFEDDTESP-LAI 64
+ L LQ ++K + DD+ +P LAI
Sbjct: 20 QALKKLQASLKLYADDS-APALAI 42
Score = 28.8 bits (63), Expect = 1.7
Identities = 11/44 (25%), Positives = 17/44 (38%), Gaps = 18/44 (40%)
Query: 146 KDSL--LSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTI 187
K +L L + + LYA D+ + LAI T+
Sbjct: 19 KQALKKLQASLKLYA---D---------DS-APALAI---KATM 46
>1rbl_M Ribulose 1,5 bisphosphate carboxylase/oxygenase ( chain);
lyase(carbon-carbon), lyase; HET: CAP; 2.20A
{Synechococcus elongatus} SCOP: d.73.1.1 PDB: 1rsc_M*
Length = 109
Score = 27.7 bits (61), Expect = 2.1
Identities = 18/85 (21%), Positives = 27/85 (31%), Gaps = 8/85 (9%)
Query: 215 LDWGLCNKMVNCG--TAVGEAMTRAIQMSKLSQSMLADRATVLSECETCREEWMSERKHY 272
+++ + M KL A VL E CR E+ Y
Sbjct: 29 IEYMIEQGFHPLIEFNEHSNPEEFYWTMWKLPLFACAAPQQVLDEVRECRSEY---GDCY 85
Query: 273 IGISFELKFLQKKKKAKNGHLVHRP 297
I + F K+ + +VHRP
Sbjct: 86 IRV---AGFDNIKECQTSSFIVHRP 107
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.137 0.412
Gapped
Lambda K H
0.267 0.0799 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,851,358
Number of extensions: 287301
Number of successful extensions: 962
Number of sequences better than 10.0: 1
Number of HSP's gapped: 849
Number of HSP's successfully gapped: 158
Length of query: 314
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 221
Effective length of database: 4,105,140
Effective search space: 907235940
Effective search space used: 907235940
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 57 (25.6 bits)