RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy9494
(314 letters)
>d1mj3a_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 260
Score = 91.4 bits (226), Expect = 4e-22
Identities = 52/206 (25%), Positives = 84/206 (40%), Gaps = 39/206 (18%)
Query: 24 NITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDE 83
++ LI LNRP +NA+ ++ L + ++ FE+D +L G E F +G D+ E+
Sbjct: 16 SVGLIQLNRPKALNALCNGLIEELNQALETFEEDPAVGAIVLTGGEKAFAAGADIKEMQN 75
Query: 84 NPDTKLF-DDFREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNR 140
+ F KKP+IAA+ GYA+G G +LA+ CD+ + E G
Sbjct: 76 RTFQDCYSGKFLSHWDHITRIKKPVIAAVNGYALGGGCELAMMCDIIYAGEKAQFGQ--- 132
Query: 141 RFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTM 200
P L +RL + +G S M
Sbjct: 133 ---------------------PEIL------------LGTIPGAGGTQRLTRAVGKSLAM 159
Query: 201 DMISLGRHITAREALDWGLCNKMVNC 226
+M+ G I+A++A GL +K+
Sbjct: 160 EMVLTGDRISAQDAKQAGLVSKIFPV 185
>d1uiya_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Thermus
thermophilus [TaxId: 274]}
Length = 253
Score = 74.4 bits (181), Expect = 4e-16
Identities = 51/234 (21%), Positives = 93/234 (39%), Gaps = 45/234 (19%)
Query: 24 NITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDE 83
++ ++ LN P++ N ++ + +L + + E D +L G+ F +G DL L+
Sbjct: 8 HVAVVFLNDPERRNPLSPEMALSLLQALDDLEADPGVRAVVLTGRGKAFSAGADLAFLER 67
Query: 84 NPDTKLFDDFREFLQKP--------AKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLM 135
+ +++R L KP +AA+ G AV G LAL CDL ++E +
Sbjct: 68 VTELGAEENYRHSLSLMRLFHRVYTYPKPTVAAVNGPAVAGGAGLALACDLVVMDEEARL 127
Query: 136 GFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIG 195
G+ + + + L + +G
Sbjct: 128 GYTEVKIGF-------------------------------------VAALVSVILVRAVG 150
Query: 196 TSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQSMLA 249
D++ GR + AREA GL N++ G A+ EA A +++K + + L
Sbjct: 151 EKAAKDLLLTGRLVEAREAKALGLVNRIAPPGKALEEAKALAEEVAKNAPTSLR 204
>d1dcia_ c.14.1.3 (A:) Dienoyl-CoA isomerase
(delta3-delta2-enoyl-CoA isomerase) {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 275
Score = 73.6 bits (179), Expect = 1e-15
Identities = 33/137 (24%), Positives = 54/137 (39%), Gaps = 16/137 (11%)
Query: 24 NITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDE 83
++ + LNRP+K NA+N L E ++ D++ ++ G F SG DL ++
Sbjct: 13 HVLHVQLNRPEKRNAMNRAFWRELVECFQKISKDSDCRAVVVSGAGKMFTSGIDLMDMAS 72
Query: 84 NPDTKLFDDFREFLQKP----------------AKKPIIAAITGYAVGQGLDLALWCDLR 127
+ DD KP+IAAI G +G G+DL CD+R
Sbjct: 73 DILQPPGDDVARIAWYLRDLISRYQKTFTVIEKCPKPVIAAIHGGCIGGGVDLISACDIR 132
Query: 128 FVEENVLMGFYNRRFVY 144
+ ++
Sbjct: 133 YCTQDAFFQVKEVDVGL 149
>d1pjha_ c.14.1.3 (A:) Dienoyl-CoA isomerase
(delta3-delta2-enoyl-CoA isomerase) {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 266
Score = 62.0 bits (149), Expect = 8e-12
Identities = 27/215 (12%), Positives = 60/215 (27%), Gaps = 19/215 (8%)
Query: 24 NITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDE 83
+I L PD +NA+ + L E ++ + + + I+ F SG D
Sbjct: 14 PFFIIHLINPDNLNALEGEDYIYLGELLELADRNRDVYFTIIQSSGRFFSSGADFKG--- 70
Query: 84 NPDTKLFDDFREFLQKPAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFV 143
+ K + ++ + + ++
Sbjct: 71 ---------IAKAQGDDTNKYPSETSKWVSNFVARNVYVTDAFIKHSKVLICCLNGPAIG 121
Query: 144 YLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMI 203
S ++ + + +L + T T L GT+ T + +
Sbjct: 122 L-------SAALVALCDIVYSINDKVYLLYPFANLGLITEGGTTVSLPLKFGTNTTYECL 174
Query: 204 SLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAI 238
+ + G +K N ++ EA +
Sbjct: 175 MFNKPFKYDIMCENGFISKNFNMPSSNAEAFNAKV 209
>d1q52a_ c.14.1.3 (A:) Naphthoate synthase MenB {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 297
Score = 58.6 bits (140), Expect = 2e-10
Identities = 21/123 (17%), Positives = 37/123 (30%), Gaps = 23/123 (18%)
Query: 25 ITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLH----- 79
++ NRP+ NA T+D L + + + +L G + G
Sbjct: 30 TVRVAFNRPEVRNAFRPHTVDELYRVLDHARMSPDVGVVLLTGNGPSPKDGGWAFCSGGD 89
Query: 80 ------------ELDENPDTKLFDDFREFLQK------PAKKPIIAAITGYAVGQGLDLA 121
D + R + + K +I + G+A G G L
Sbjct: 90 QRIRGRSGYQYASGDTADTVDVARAGRLHILEVQRLIRFMPKVVICLVNGWAAGGGHSLH 149
Query: 122 LWC 124
+ C
Sbjct: 150 VVC 152
>d1nzya_ c.14.1.3 (A:) 4-Chlorobenzoyl-CoA dehalogenase {Pseudomonas
sp., strain CBS-3 [TaxId: 306]}
Length = 269
Score = 49.8 bits (117), Expect = 1e-07
Identities = 29/131 (22%), Positives = 53/131 (40%), Gaps = 10/131 (7%)
Query: 24 NITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDE 83
+ I++ P NA+++K + + + + R E+D ++ G E FC+GF L E+
Sbjct: 12 GVAEITIKLPRHRNALSVKAMQEVTDALNRAEEDDSVGAVMITGAEDAFCAGFYLREIPL 71
Query: 84 NPDTKLFDDFREFLQKP----------AKKPIIAAITGYAVGQGLDLALWCDLRFVEENV 133
+ D K+P++AAI G A G GL ++L D+ ++
Sbjct: 72 DKGVAGVRDHFRIAALWWHQMIHKIIRVKRPVLAAINGVAAGGGLGISLASDMAICADSA 131
Query: 134 LMGFYNRRFVY 144
Sbjct: 132 KFVCAWHTIGI 142
>d1hzda_ c.14.1.3 (A:) AUH protein {Human (Homo sapiens) [TaxId:
9606]}
Length = 266
Score = 49.0 bits (115), Expect = 2e-07
Identities = 28/223 (12%), Positives = 65/223 (29%), Gaps = 30/223 (13%)
Query: 25 ITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDEN 84
I ++ +NR N+++ + L + + + D + I+ + +
Sbjct: 16 IVVLGINRAYGKNSLSKNLIKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAGADLKERAK 75
Query: 85 PDTKLFDDFREFLQKPAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVY 144
+ ++ + N +
Sbjct: 76 MSSS------------------------------EVGPFVSKIRAVINDIANLPVPTIAA 105
Query: 145 LKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMIS 204
+ L G+ L R + + LAI +RL + IG S ++I
Sbjct: 106 IDGLALGGGLELALACDIRVAASSAKMGLVETKLAIIPGGGGTQRLPRAIGMSLAKELIF 165
Query: 205 LGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQSM 247
R + +EA GL + ++ A +A+ +++
Sbjct: 166 SARVLDGKEAKAVGLISHVLEQNQEGDAAYRKALDLAREFLPQ 208
>d1szoa_ c.14.1.3 (A:) 6-oxo camphor hydrolase {Rhodococcus
erythropolis [TaxId: 1833]}
Length = 249
Score = 43.2 bits (100), Expect = 1e-05
Identities = 33/226 (14%), Positives = 68/226 (30%), Gaps = 31/226 (13%)
Query: 24 NITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDE 83
+ L++++ K D L D E+ + IL G +FC+ D +
Sbjct: 22 GVLLVTVHTEGKSLVWTSTAHDELAYCFHDIACDRENKVVILTGTGPSFCNEIDFTSFNL 81
Query: 84 NPDTKLFDDFREFLQKPAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFV 143
+ E + I AV + A + ++++ + F
Sbjct: 82 GTPHDWDEIIFEGQRLLNNLLSIEVPVIAAVNGPVTNAPEIPVMS---DIVLAAESATFQ 138
Query: 144 YLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMI 203
D I D ++G++R +
Sbjct: 139 ----------------------------DGPHFPSGIVPGDGAHVVWPHVLGSNRGRYFL 170
Query: 204 SLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQSMLA 249
G+ + AR ALD+G N++++ + A A +++
Sbjct: 171 LTGQELDARTALDYGAVNEVLSEQELLPRAWELARGIAEKPLLARR 216
>d2f6qa1 c.14.1.3 (A:108-352) Peroxisomal 3,2-trans-enoyl-CoA
isomerase {Human (Homo sapiens) [TaxId: 9606]}
Length = 245
Score = 41.3 bits (95), Expect = 6e-05
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 24 NITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHE 80
IT I NRP K NAIN + + +K D +S + +L G + SG DL
Sbjct: 12 GITKIMFNRPKKKNAINTEMYHEIMRALKAASKD-DSIITVLTGNGDYYSSGNDLTN 67
>d1ef8a_ c.14.1.3 (A:) Methylmalonyl CoA decarboxylase
{Escherichia coli [TaxId: 562]}
Length = 261
Score = 41.0 bits (94), Expect = 9e-05
Identities = 7/34 (20%), Positives = 15/34 (44%)
Query: 24 NITLISLNRPDKINAINLKTLDALQENIKRFEDD 57
+ +I N K+NA++ +D L + +
Sbjct: 13 KVAVIEFNYGRKLNALSKVFIDDLMQALSDLNRP 46
>d1wdka4 c.14.1.3 (A:1-310) Fatty oxidation complex alpha subunit,
N-terminal domain {Pseudomonas fragi [TaxId: 296]}
Length = 310
Score = 40.8 bits (94), Expect = 1e-04
Identities = 15/76 (19%), Positives = 30/76 (39%), Gaps = 1/76 (1%)
Query: 24 NITLISLN-RPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELD 82
I + + + + +N N TL+ L++ + + D I+ + F G D+ E
Sbjct: 16 GIVELKFDLKGESVNKFNRLTLNELRQAVDAIKADASVKGVIVSSGKDVFIVGADITEFV 75
Query: 83 ENPDTKLFDDFREFLQ 98
EN + L+
Sbjct: 76 ENFKLPDAELIAGNLE 91
>d2a7ka1 c.14.1.3 (A:1-230) Carbapenem biosynthes protein CarB
{Pectobacterium carotovorum [TaxId: 554]}
Length = 230
Score = 40.2 bits (92), Expect = 2e-04
Identities = 7/36 (19%), Positives = 18/36 (50%)
Query: 24 NITLISLNRPDKINAINLKTLDALQENIKRFEDDTE 59
+ +I+L+ P+K N + ++++ + R D
Sbjct: 9 EVRVITLDHPNKHNPFSRTLETSVKDALARANADDS 44
>d2fw2a1 c.14.1.3 (A:3-260) Chromodomain protein CDY2A {Human
(Homo sapiens) [TaxId: 9606]}
Length = 258
Score = 36.4 bits (82), Expect = 0.003
Identities = 5/33 (15%), Positives = 13/33 (39%)
Query: 25 ITLISLNRPDKINAINLKTLDALQENIKRFEDD 57
++ R + NA+N + + + + D
Sbjct: 13 TQIVLSTRSTEKNALNTEVIKEMVNALNSAAAD 45
>d1wz8a1 c.14.1.3 (A:2-264) Probable enoyl-CoA hydratase TTHA0218
{Thermus thermophilus [TaxId: 274]}
Length = 263
Score = 36.0 bits (81), Expect = 0.004
Identities = 14/59 (23%), Positives = 22/59 (37%), Gaps = 4/59 (6%)
Query: 22 ILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHE 80
+L IT R +K+NA+ L + E +L G+ G F +G
Sbjct: 20 VLEITF----RGEKLNAMPPALHRGLARVWRDLEAVEGVRAVLLRGEGGVFSAGGSFGL 74
>d1sg4a1 c.14.1.3 (A:2-250) Dienoyl-CoA isomerase
(delta3-delta2-enoyl-CoA isomerase) {Human (Homo
sapiens), mitochondrial [TaxId: 9606]}
Length = 249
Score = 35.2 bits (79), Expect = 0.006
Identities = 9/49 (18%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Query: 25 ITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFC 73
+ ++ P +N+++L+ L L ++++ E+D IL
Sbjct: 14 VAVMKFKNP-PVNSLSLEFLTELVISLEKLENDKSFRGVILTSDRPGVF 61
>d1rbli_ d.73.1.1 (I:) Ribulose 1,5-bisphosphate
carboxylase-oxygenase {Synechococcus sp., strain pcc
6301 [TaxId: 1131]}
Length = 109
Score = 31.8 bits (72), Expect = 0.034
Identities = 18/67 (26%), Positives = 23/67 (34%), Gaps = 6/67 (8%)
Query: 231 GEAMTRAIQMSKLSQSMLADRATVLSECETCREEWMSERKHYIGISFELKFLQKKKKAKN 290
M KL A VL E CR E+ YI + F K+ +
Sbjct: 47 SNPEEFYWTMWKLPLFACAAPQQVLDEVRECRSEY---GDCYIRV---AGFDNIKECQTS 100
Query: 291 GHLVHRP 297
+VHRP
Sbjct: 101 SFIVHRP 107
>d1svdm1 d.73.1.1 (M:3-110) Ribulose 1,5-bisphosphate
carboxylase-oxygenase {Halothiobacillus neapolitanus
[TaxId: 927]}
Length = 108
Score = 28.2 bits (63), Expect = 0.42
Identities = 13/67 (19%), Positives = 25/67 (37%), Gaps = 6/67 (8%)
Query: 231 GEAMTRAIQMSKLSQSMLADRATVLSECETCREEWMSERKHYIGISFELKFLQKKKKAKN 290
+M + M KL + VL+E E CR + H + + + + +
Sbjct: 47 KNSMNQYWYMWKLPFFGEQNVDNVLAEIEACRSAY---PTHQVKL---VAYDNYAQSLGL 100
Query: 291 GHLVHRP 297
+V+R
Sbjct: 101 AFVVYRG 107
>d1bxni_ d.73.1.1 (I:) Ribulose 1,5-bisphosphate
carboxylase-oxygenase {Alcaligenes eutrophus [TaxId:
106590]}
Length = 129
Score = 27.9 bits (62), Expect = 0.92
Identities = 11/45 (24%), Positives = 15/45 (33%), Gaps = 3/45 (6%)
Query: 231 GEAMTRAIQMSKLSQSMLADRATVLSECETCREEWMSERKHYIGI 275
+M L L D A +L E R + HYI +
Sbjct: 41 PHPRNTYWEMFGLPMFDLRDAAGILMEINNARNTF---PNHYIRV 82
>d1wdds_ d.73.1.1 (S:) Ribulose 1,5-bisphosphate
carboxylase-oxygenase {Rice (Oryza sativa) [TaxId:
4530]}
Length = 122
Score = 27.5 bits (61), Expect = 0.98
Identities = 13/67 (19%), Positives = 24/67 (35%), Gaps = 6/67 (8%)
Query: 231 GEAMTRAIQMSKLSQSMLADRATVLSECETCREEWMSERKHYIGISFELKFLQKKKKAKN 290
G R M KL D VL E E ++ + ++ I + F ++
Sbjct: 59 GYYDGRYWTMWKLPMFGCTDATQVLKELEEAKKAY---PDAFVRI---IGFDNVRQVQLI 112
Query: 291 GHLVHRP 297
+ ++P
Sbjct: 113 SFIAYKP 119
>d1gk8i_ d.73.1.1 (I:) Ribulose 1,5-bisphosphate
carboxylase-oxygenase {Chlamydomonas reinhardtii [TaxId:
3055]}
Length = 126
Score = 27.1 bits (60), Expect = 1.3
Identities = 17/72 (23%), Positives = 25/72 (34%), Gaps = 6/72 (8%)
Query: 226 CGTAVGEAMTRAIQMSKLSQSMLADRATVLSECETCREEWMSERKHYIGISFELKFLQKK 285
+ R M KL D VL E C + + Y+ + + F +K
Sbjct: 61 GSVSCLYYDNRYWTMWKLPMFGCRDPMQVLREIVACTKAF---PDAYVRL---VAFDNQK 114
Query: 286 KKAKNGHLVHRP 297
+ G LV RP
Sbjct: 115 QVQIMGFLVQRP 126
>d1l2la_ c.72.1.3 (A:) ADP-dependent glucokinase {Archaeon
Thermococcus litoralis [TaxId: 2265]}
Length = 451
Score = 27.9 bits (62), Expect = 1.8
Identities = 11/44 (25%), Positives = 20/44 (45%), Gaps = 3/44 (6%)
Query: 76 FDLHELDENPDTKLFDDFREFLQKPAKKPIIAAITGYAVGQGLD 119
F D NP + +++ E ++ AK+ +A I+G L
Sbjct: 195 FIGAADDYNPILYVREEWIERFEEIAKRSELAIISGL---HPLT 235
>d1zl0a2 c.23.16.7 (A:3-169) LD-carboxypeptidase A, N-terminal
domain {Pseudomonas aeruginosa [TaxId: 287]}
Length = 167
Score = 26.4 bits (58), Expect = 3.0
Identities = 12/54 (22%), Positives = 17/54 (31%)
Query: 84 NPDTKLFDDFREFLQKPAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGF 137
+ +D P + GY GQ L W L+ L+GF
Sbjct: 59 GTVEQRLEDLHNAFDMPDITAVWCLRGGYGCGQLLPGLDWGRLQAASPRPLIGF 112
>d1nkra1 b.1.1.4 (A:6-101) Killer cell inhibitory receptor {Human
(Homo sapiens), p58-cl42 kir [TaxId: 9606]}
Length = 96
Score = 25.4 bits (55), Expect = 3.7
Identities = 7/23 (30%), Positives = 10/23 (43%)
Query: 102 KKPIIAAITGYAVGQGLDLALWC 124
+KP + A G V + L C
Sbjct: 1 RKPSLLAHPGPLVKSEETVILQC 23
>d1ryua_ a.4.3.1 (A:) SWI-SNF complex protein p270, SMARCF1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 120
Score = 25.6 bits (56), Expect = 4.1
Identities = 12/51 (23%), Positives = 21/51 (41%), Gaps = 12/51 (23%)
Query: 78 LHELDENPDTKLF-DDFREFLQKPA----KKPIIAAITGYAVGQGLDLALW 123
L+EL P+ K++ D + F ++ A P + + LDL
Sbjct: 12 LYELGGEPERKMWVDRYLAFTEEKAMGMTNLPAVG-------RKPLDLYRL 55
>d1qcsa2 d.31.1.1 (A:86-201) C-terminal domain of NSF-N, NSF-Nc
{Hamster (Cricetulus griseus) [TaxId: 10029]}
Length = 116
Score = 24.8 bits (54), Expect = 8.3
Identities = 10/22 (45%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Query: 270 KHYIG-ISFELKFLQKKKKAKN 290
K IG ++ E+ FLQKK N
Sbjct: 4 KQCIGTMTIEIDFLQKKNIDSN 25
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.137 0.412
Gapped
Lambda K H
0.267 0.0624 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,178,728
Number of extensions: 53133
Number of successful extensions: 181
Number of sequences better than 10.0: 1
Number of HSP's gapped: 177
Number of HSP's successfully gapped: 35
Length of query: 314
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 229
Effective length of database: 1,240,546
Effective search space: 284085034
Effective search space used: 284085034
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (24.4 bits)