BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9496
(259 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2LCK|A Chain A, Structure Of The Mitochondrial Uncoupling Protein 2
Determined By Nmr Molecular Fragment Replacement
Length = 303
Score = 64.7 bits (156), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 60/246 (24%), Positives = 101/246 (41%), Gaps = 40/246 (16%)
Query: 1 EGWKSFYRGYVPNLLGIIPYAGIDLAVYETLKNSYFRKHDDDNEAPSVLLLLACGTASST 60
EG +S Y G V L + +A + + +Y+++K Y + +E + L G+ +
Sbjct: 61 EGPRSLYNGLVAGLQRQMSFASVRIGLYDSVKQFYTK----GSEHAGIGSRLLAGSTTGA 116
Query: 61 CGQVCSYPLALVRTRLQAQVLTNVPGAPELTMTSLLRHIIQTEGITGLYRGITPNFLKVA 120
+ P +V+ R QAQ G + + I + EGI GL++G +PN + A
Sbjct: 117 LAVAVAQPTDVVKVRFQAQARAG-GGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNA 175
Query: 121 PAVSISYVVYERCRQTLGVNMTPTSPKITLKNSYFRKHDDDNEAPSVLLLLACGTASSTC 180
V Y+ + TL LK + DD L C S+
Sbjct: 176 IVNCAELVTYDLIKDTL------------LKANLM---TDD---------LPCHFTSAFG 211
Query: 181 GQVCSYPLALVRTRLQAQEIDPLKVLKTRLALRKTGEYSSILDAAKKISAREGWKSFYRG 240
C+ +A P+ V+KTR G+Y S A + +EG ++FY+G
Sbjct: 212 AGFCTTVIA-----------SPVDVVKTRYMNSALGQYHSAGHCALTMLRKEGPRAFYKG 260
Query: 241 YVPNLL 246
++P+ L
Sbjct: 261 FMPSFL 266
Score = 43.9 bits (102), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/137 (21%), Positives = 60/137 (43%), Gaps = 8/137 (5%)
Query: 1 EGWKSFYRGYVPNLLGIIPYAGIDLAVYETLKNSYFRKHDDDNEAPSVLLLLACGTASST 60
EG + ++G PN+ +L Y+ +K++ + + ++ P +
Sbjct: 158 EGIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKANLMTDDLPC---HFTSAFGAGF 214
Query: 61 CGQVCSYPLALVRTRLQAQVLTNVPGAPELTMTSLLRHIIQTEGITGLYRGITPNFLKVA 120
C V + P+ +V+TR L A +T +++ EG Y+G P+FL++
Sbjct: 215 CTTVIASPVDVVKTRYMNSALGQYHSAGHCALT-----MLRKEGPRAFYKGFMPSFLRLG 269
Query: 121 PAVSISYVVYERCRQTL 137
+ +V YE+ ++ L
Sbjct: 270 SWNVVMFVTYEQLKRAL 286
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/202 (21%), Positives = 76/202 (37%), Gaps = 42/202 (20%)
Query: 51 LLACGTASSTCGQVCSYPLALVRTRLQAQ-----VLTNVPGAPELTMTSLLRHIIQTEGI 105
L GTA+ + ++PL + RLQ Q ++ A + + +++TEG
Sbjct: 5 FLGAGTAACIA-DLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGP 63
Query: 106 TGLYRGITPNFLKVAPAVSISYVVYERCRQTLGVNMTPTSPKITLKNSYFRKHDDDNEAP 165
LY G+ + M+ S +I L +S + + +E
Sbjct: 64 RSLYNGLVAGLQR---------------------QMSFASVRIGLYDSVKQFYTKGSEHA 102
Query: 166 SVLLLLACGTASSTCGQVCSYPLALVRTRLQAQEIDPLKVLKTRLALRKTG--EYSSILD 223
+ L G+ + + P +V+ R QAQ R G Y S ++
Sbjct: 103 GIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQA-------------RAGGGRRYQSTVE 149
Query: 224 AAKKISAREGWKSFYRGYVPNL 245
A K I+ EG + ++G PN+
Sbjct: 150 AYKTIAREEGIRGLWKGTSPNV 171
>pdb|1OKC|A Chain A, Structure Of Mitochondrial AdpATP CARRIER IN COMPLEX WITH
Carboxyatractyloside
pdb|2C3E|A Chain A, The Bovine Mitochondrial Adp-Atp Carrier
Length = 297
Score = 60.8 bits (146), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 61/252 (24%), Positives = 103/252 (40%), Gaps = 43/252 (17%)
Query: 1 EGWKSFYRGYVPNLLGIIPYAGIDLAVYETLKNSYFRKHDDDNEAPSVLL-LLACGTASS 59
+G+ SF+RG + N++ P ++ A + K + D + LA G A+
Sbjct: 64 QGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAG 123
Query: 60 TCGQVCSYPLALVRTRLQAQVLTNVPGAPELTMTSL---LRHIIQTEGITGLYRGITPNF 116
YPL RTRL A V GA + T L + I +++G+ GLY+G +
Sbjct: 124 ATSLCFVYPLDFARTRLAADV---GKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSV 180
Query: 117 LKVAPAVSISYVVYERCRQTLGVNMTPTSPKITLKNSYFRKHDDDNEAPSVLLLLACGTA 176
+ + + VY+ + M P + + S+ + T
Sbjct: 181 QGIIIYRAAYFGVYDTAK-----GMLPDPKNVHIIVSW----------------MIAQTV 219
Query: 177 SSTCGQVCSYPLALVRTRLQAQEIDPLKVLKTRLALRKTGE--YSSILDAAKKISAREGW 234
++ G V SYP VR R+ Q + RK + Y+ +D +KI+ EG
Sbjct: 220 TAVAGLV-SYPFDTVRRRMMMQ------------SGRKGADIMYTGTVDCWRKIAKDEGP 266
Query: 235 KSFYRGYVPNLL 246
K+F++G N+L
Sbjct: 267 KAFFKGAWSNVL 278
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/221 (21%), Positives = 87/221 (39%), Gaps = 32/221 (14%)
Query: 43 NEAPSVLLLLACGTASSTCGQVCSYPLALVRTRLQAQVLTNVPGAPEL--TMTSLLRHII 100
++A S L G ++ + P+ V+ LQ Q + A + + + I
Sbjct: 2 DQALSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIP 61
Query: 101 QTEGITGLYRGITPNFLKVAPAVSISYVVYERCRQTL--GVNMTPTSPKITLKNSYFRKH 158
+ +G +RG N ++ P ++++ ++ +Q GV+ ++ F ++
Sbjct: 62 KEQGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVD----------RHKQFWRY 111
Query: 159 DDDNEAPSVLLLLACGTASSTCGQVCSYPLALVRTRLQAQEIDPLKVLKTRLALRKTGEY 218
N LA G A+ YPL RTRL A D K R E+
Sbjct: 112 FAGN--------LASGGAAGATSLCFVYPLDFARTRLAA---DVGKGAAQR-------EF 153
Query: 219 SSILDAAKKISAREGWKSFYRGYVPNLLGIIPYAGIDLAVY 259
+ + + KI +G + Y+G+ ++ GII Y VY
Sbjct: 154 TGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVY 194
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 52/120 (43%), Gaps = 9/120 (7%)
Query: 1 EGWKSFYRGYVPNLLGIIPYAGIDLAVYETLKNSYFRKHDDDNEAPSVLLLLACGTASST 60
+G + Y+G+ ++ GII Y VY+T K D ++ + T ++
Sbjct: 167 DGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGML----PDPKNVHIIVSWMIAQTVTAV 222
Query: 61 CGQVCSYPLALVRTRLQAQVLTNVPGAPELTMTSL--LRHIIQTEGITGLYRGITPNFLK 118
G V SYP VR R+ Q + GA + ++ R I + EG ++G N L+
Sbjct: 223 AGLV-SYPFDTVRRRMMMQ--SGRKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLR 279
>pdb|2KHV|A Chain A, Solution Nmr Structure Of Protein Nmul_a0922 From
Nitrosospira Multiformis. Northeast Structural Genomics
Consortium Target Nmr38b
Length = 106
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
Query: 174 GTASSTCGQVCSYPLAL--VRTRLQAQEIDPLKVLKTRLALRKTGEYSSILDAAKKISAR 231
T + CG V PL++ V T+L + +DP+ K A R G S+LD A R
Sbjct: 29 NTIKTYCGPVIG-PLSVQDVDTKLIMKVLDPIWEQKPETASRLRGRIESVLDWATVRGYR 87
Query: 232 EGWK-SFYRGYV 242
EG + +RGY+
Sbjct: 88 EGDNPARWRGYL 99
>pdb|4IRM|A Chain A, Crystal Structure Of Mntc R116a Mutant Exhibits
Flexibility In The C- Terminal Domain
pdb|4IRM|B Chain B, Crystal Structure Of Mntc R116a Mutant Exhibits
Flexibility In The C- Terminal Domain
pdb|4IRM|C Chain C, Crystal Structure Of Mntc R116a Mutant Exhibits
Flexibility In The C- Terminal Domain
Length = 330
Score = 27.3 bits (59), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 37/96 (38%), Gaps = 10/96 (10%)
Query: 168 LLLLACGTASSTCGQVCSYPLALVRTRLQAQEIDPLKVLKTRLALRKTGEYSS----ILD 223
L CGTA T S + V T +Q + + KVL T L + + +++
Sbjct: 20 FWLTGCGTAEVTTSNAPSEEVTAVTTEVQGETEEKKKVLTTFTVLADMVQNVAGDKLVVE 79
Query: 224 AAKKISAREGWKSFYRGYVPNLLGIIPYAGIDLAVY 259
+ +I A GY P I+ DL +Y
Sbjct: 80 SITRIGAE------IHGYEPTPSDIVKAQDADLILY 109
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,403,812
Number of Sequences: 62578
Number of extensions: 271202
Number of successful extensions: 535
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 522
Number of HSP's gapped (non-prelim): 12
length of query: 259
length of database: 14,973,337
effective HSP length: 97
effective length of query: 162
effective length of database: 8,903,271
effective search space: 1442329902
effective search space used: 1442329902
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)