Query psy9496
Match_columns 259
No_of_seqs 126 out of 1315
Neff 10.1
Searched_HMMs 29240
Date Fri Aug 16 20:52:44 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9496.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9496hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1okc_A ADP, ATP carrier protei 100.0 2.3E-46 8E-51 309.4 14.0 226 1-259 64-290 (297)
2 2lck_A Mitochondrial uncouplin 100.0 2.5E-46 8.4E-51 309.9 11.4 219 1-259 61-279 (303)
3 1okc_A ADP, ATP carrier protei 100.0 1.2E-36 4.1E-41 251.2 11.9 189 45-259 4-194 (297)
4 2lck_A Mitochondrial uncouplin 100.0 9.2E-36 3.1E-40 246.5 8.1 177 51-259 4-185 (303)
5 3f2e_A SIRV coat protein; four 31.6 12 0.00042 23.0 0.4 35 214-248 4-42 (100)
6 3vjj_A P9-1; 3.00A {Rice black 24.4 35 0.0012 26.8 1.9 35 180-234 274-308 (368)
7 2acm_A Mucin-1; auto-catalytic 20.5 22 0.00075 20.7 0.1 20 90-109 40-59 (66)
8 4b19_A PEPA1; toxin, toxin apo 14.2 26 0.00088 17.3 -0.6 22 169-190 5-26 (30)
9 3tgu_G UQCRQ, mitochondrial ub 11.9 2.6E+02 0.0089 17.3 3.4 35 2-36 33-67 (81)
10 1tlq_A Hypothetical protein YP 9.1 3.5E+02 0.012 19.8 3.7 46 20-65 113-159 (189)
No 1
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=2.3e-46 Score=309.35 Aligned_cols=226 Identities=23% Similarity=0.364 Sum_probs=190.9
Q ss_pred CcchhcccchHHHHhhhhhhHHHHHHHHHHHHHHhcccCCCCCC-ChhHHHHHHHHhhhhhhhhcccccHHHHHHHHHHh
Q psy9496 1 EGWKSFYRGYVPNLLGIIPYAGIDLAVYETLKNSYFRKHDDDNE-APSVLLLLACGTASSTCGQVCSYPLALVRTRLQAQ 79 (259)
Q Consensus 1 eG~~~lyrG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~ag~~~~~v~~Pld~ik~r~q~~ 79 (259)
||++|||||+.+++++.++..+++|.+||.+++.+....+...+ .......+++|++||+++.++++|+|+||+|+|++
T Consensus 64 eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~ 143 (297)
T 1okc_A 64 QGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAAD 143 (297)
T ss_dssp HCGGGGGTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cchhheecccHHHHHHHHHHHHHHHHHHHHHHHHhccccCcccchHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhcc
Confidence 69999999999999999999999999999999854432221111 13456789999999999999999999999999998
Q ss_pred hccCCCCCCCCcHHHHHHHHHHhhCcccccccchhhHhhhhhchhhhHHHHHHHHHHhcCCCCCCCccccccccccCCCC
Q psy9496 80 VLTNVPGAPELTMTSLLRHIIQTEGITGLYRGITPNFLKVAPAVSISYVVYERCRQTLGVNMTPTSPKITLKNSYFRKHD 159 (259)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~i~~~~G~~~ly~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (259)
.........|++.++++++++++||+++||+|+.+++++++|+++++|.+||.+|+.+...
T Consensus 144 ~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~------------------- 204 (297)
T 1okc_A 144 VGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDP------------------- 204 (297)
T ss_dssp CCSSTTTCSCSSHHHHHHHHHHHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCGG-------------------
T ss_pred ccCCCcCcCCCCHHHHHHHHHHhccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhccC-------------------
Confidence 6323334568999999999999999999999999999999999999999999999976321
Q ss_pred CCCCchhHHHHHHhhhhhhhhhhhhcchHHHHHHHHhhcccCchhHHHHHhhhhccCCCccHHHHHHHHHHhhhhhhhhc
Q psy9496 160 DDNEAPSVLLLLACGTASSTCGQVCSYPLALVRTRLQAQEIDPLKVLKTRLALRKTGEYSSILDAAKKISAREGWKSFYR 239 (259)
Q Consensus 160 ~~~~~~~~~~~~~~~~~ag~~~~~~~~P~d~ik~r~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~G~~glyr 239 (259)
...+....++++.++|++++++++|+|+||+|||++...+ .....|.++++|+++|+++||++||||
T Consensus 205 ---~~~~~~~~~~~g~~ag~~a~~~t~P~dvvktr~q~~~~~~----------~~~~~y~~~~~~~~~i~~~eG~~glyr 271 (297)
T 1okc_A 205 ---KNVHIIVSWMIAQTVTAVAGLVSYPFDTVRRRMMMQSGRK----------GADIMYTGTVDCWRKIAKDEGPKAFFK 271 (297)
T ss_dssp ---GCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCC----------GGGCSCSSHHHHHHHHHHHHCGGGGGT
T ss_pred ---CCccHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhcCCCC----------CCCCCCCCHHHHHHHHHHHcCcCeEec
Confidence 0123567789999999999999999999999999875321 124579999999999999999999999
Q ss_pred ccccccccccccceeeeeeC
Q psy9496 240 GYVPNLLGIIPYAGIDLAVY 259 (259)
Q Consensus 240 G~~~~~~~~~~~~~~~~~~y 259 (259)
|+.|+++|. +.++++|.+|
T Consensus 272 G~~~~~~r~-~~~~~~f~~y 290 (297)
T 1okc_A 272 GAWSNVLRG-MGGAFVLVLY 290 (297)
T ss_dssp THHHHHHHH-HHHHHHHHHH
T ss_pred chHHHHHhh-ccceeeehHH
Confidence 999999996 5678887765
No 2
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=2.5e-46 Score=309.94 Aligned_cols=219 Identities=24% Similarity=0.425 Sum_probs=193.9
Q ss_pred CcchhcccchHHHHhhhhhhHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHHHhhhhhhhhcccccHHHHHHHHHHhh
Q psy9496 1 EGWKSFYRGYVPNLLGIIPYAGIDLAVYETLKNSYFRKHDDDNEAPSVLLLLACGTASSTCGQVCSYPLALVRTRLQAQV 80 (259)
Q Consensus 1 eG~~~lyrG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ag~~~~~v~~Pld~ik~r~q~~~ 80 (259)
||++|||||+.+++++.++..+++|.+|+.+++.+.... +..+....+++|++||+++.++++|+|++|+|+|++.
T Consensus 61 eG~~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~~~~~~----~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~ 136 (303)
T 2lck_A 61 EGPRSLYNGLVAGLQRQMSFASVRIGLYDSVKQFYTKGS----EHAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQA 136 (303)
T ss_dssp HCHHHHHSSHHHHHHHHHHHHHHTTTHHHHHHHHHSCCC----SSCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSC
T ss_pred hCHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCC----cCCcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhccc
Confidence 699999999999999999999999999999999886431 1355678899999999999999999999999999986
Q ss_pred ccCCCCCCCCcHHHHHHHHHHhhCcccccccchhhHhhhhhchhhhHHHHHHHHHHhcCCCCCCCccccccccccCCCCC
Q psy9496 81 LTNVPGAPELTMTSLLRHIIQTEGITGLYRGITPNFLKVAPAVSISYVVYERCRQTLGVNMTPTSPKITLKNSYFRKHDD 160 (259)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~i~~~~G~~~ly~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (259)
.. .....|++.++++++|+++||+++||+|+.+++++++++++++|.+||.+|+.+....
T Consensus 137 ~~-~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~l~~~~------------------- 196 (303)
T 2lck_A 137 RA-GGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKAN------------------- 196 (303)
T ss_dssp SC-CCSSSCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTT-------------------
T ss_pred cc-CCCCCCCCHHHHHHHHHHhcChhhhhCCccHHHHHHHHHHHHHHHHHHHHHHHHHhcc-------------------
Confidence 21 2344689999999999999999999999999999999999999999999999874321
Q ss_pred CCCchhHHHHHHhhhhhhhhhhhhcchHHHHHHHHhhcccCchhHHHHHhhhhccCCCccHHHHHHHHHHhhhhhhhhcc
Q psy9496 161 DNEAPSVLLLLACGTASSTCGQVCSYPLALVRTRLQAQEIDPLKVLKTRLALRKTGEYSSILDAAKKISAREGWKSFYRG 240 (259)
Q Consensus 161 ~~~~~~~~~~~~~~~~ag~~~~~~~~P~d~ik~r~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~G~~glyrG 240 (259)
....+....+++|+++|++++++++|+|+||+|||.+.. ..|.++++|+++|+++||++|||||
T Consensus 197 -~~~~~~~~~~~~g~~ag~~~~~~~~P~dvvktrlq~~~~---------------~~y~~~~~~~~~i~~~eG~~glyrG 260 (303)
T 2lck_A 197 -LMTDDLPCHFTSAFGAGFCTTVIASPVDVVKTRYMNSAL---------------GQYHSAGHCALTMLRKEGPRAFYKG 260 (303)
T ss_dssp -SCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCS---------------SSCCSHHHHHHHHHHSSCTHHHHSC
T ss_pred -CCCCchHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhccc---------------cccCCHHHHHHHHHHHcChHHhhcc
Confidence 112234678999999999999999999999999999862 3699999999999999999999999
Q ss_pred cccccccccccceeeeeeC
Q psy9496 241 YVPNLLGIIPYAGIDLAVY 259 (259)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~y 259 (259)
+.|+++|.+|.++++|.+|
T Consensus 261 ~~~~~~r~~p~~~i~f~~y 279 (303)
T 2lck_A 261 FMPSFLRLGSWNVVMFVTY 279 (303)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHH
Confidence 9999999999999998876
No 3
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=1.2e-36 Score=251.23 Aligned_cols=189 Identities=21% Similarity=0.311 Sum_probs=159.1
Q ss_pred ChhHHHHHHHHhhhhhhhhcccccHHHHHHHHHHhhccC--CCCCCCCcHHHHHHHHHHhhCcccccccchhhHhhhhhc
Q psy9496 45 APSVLLLLACGTASSTCGQVCSYPLALVRTRLQAQVLTN--VPGAPELTMTSLLRHIIQTEGITGLYRGITPNFLKVAPA 122 (259)
Q Consensus 45 ~~~~~~~~~~g~~ag~~~~~v~~Pld~ik~r~q~~~~~~--~~~~~~~~~~~~~~~i~~~~G~~~ly~G~~~~~~~~~~~ 122 (259)
..+....+++|++||+++.++++|+|++|+|+|++.... .....|++.++++++++++||+++||+|+.+++++++++
T Consensus 4 ~~~~~~~~~aG~~ag~~~~~~~~Pld~vKtrlQ~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~ 83 (297)
T 1okc_A 4 ALSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPT 83 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCSSCCGGGSCCSHHHHHHHHHHHHCGGGGGTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhcccccccccccccccHHHHHHHHHhccchhheecccHHHHHHHHHH
Confidence 345678999999999999999999999999999986311 123468999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHhcCCCCCCCccccccccccCCCCCCCCchhHHHHHHhhhhhhhhhhhhcchHHHHHHHHhhcccCc
Q psy9496 123 VSISYVVYERCRQTLGVNMTPTSPKITLKNSYFRKHDDDNEAPSVLLLLACGTASSTCGQVCSYPLALVRTRLQAQEIDP 202 (259)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~~~~~~P~d~ik~r~q~~~~~~ 202 (259)
++++|.+||.+|+.+.... .............+++|.++|++++++++|+|+||+|||++....
T Consensus 84 ~~~~f~~ye~~k~~~~~~~----------------~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~ 147 (297)
T 1okc_A 84 QALNFAFKDKYKQIFLGGV----------------DRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKG 147 (297)
T ss_dssp HHHHHHHHHHHHHHHHTTC----------------CTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSS
T ss_pred HHHHHHHHHHHHHHhcccc----------------CcccchHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccCC
Confidence 9999999999999542210 001111234577899999999999999999999999999985321
Q ss_pred hhHHHHHhhhhccCCCccHHHHHHHHHHhhhhhhhhcccccccccccccceeeeeeC
Q psy9496 203 LKVLKTRLALRKTGEYSSILDAAKKISAREGWKSFYRGYVPNLLGIIPYAGIDLAVY 259 (259)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~G~~glyrG~~~~~~~~~~~~~~~~~~y 259 (259)
.....|.++++|+++|+++||++|||||+.++++|.+|..+++|.+|
T Consensus 148 ----------~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~y 194 (297)
T 1okc_A 148 ----------AAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVY 194 (297)
T ss_dssp ----------TTTCSCSSHHHHHHHHHHHHCHHHHTTTHHHHHHHHHHHHHHHHHHH
T ss_pred ----------CcCcCCCCHHHHHHHHHHhccHHHhcCCchHHHHHHHHHHHHHHHHH
Confidence 12457899999999999999999999999999999999999998775
No 4
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=9.2e-36 Score=246.50 Aligned_cols=177 Identities=20% Similarity=0.322 Sum_probs=155.1
Q ss_pred HHHHHhhhhhhhhcccccHHHHHHHHHHhhccC-----CCCCCCCcHHHHHHHHHHhhCcccccccchhhHhhhhhchhh
Q psy9496 51 LLACGTASSTCGQVCSYPLALVRTRLQAQVLTN-----VPGAPELTMTSLLRHIIQTEGITGLYRGITPNFLKVAPAVSI 125 (259)
Q Consensus 51 ~~~~g~~ag~~~~~v~~Pld~ik~r~q~~~~~~-----~~~~~~~~~~~~~~~i~~~~G~~~ly~G~~~~~~~~~~~~~~ 125 (259)
.+++|++||+++.++++|+|++|+|+|++.... .....|++.++++++++++||+++||+|+.+++++.++++++
T Consensus 4 ~~~aG~~ag~~~~~~~~Pld~iKtrlQ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i 83 (303)
T 2lck_A 4 KFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQMSFASV 83 (303)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHSSCCTTCCSHHHHCSCSSCSCHHHHHHHHHHHHCHHHHHSSHHHHHHHHHHHHHH
T ss_pred hHHhHHHHHHHHHHHcCcHHHHHHHHHhhhccccccccccCCCCCCHHHHHHHHHHhhCHHHHHcCCHHHHHHHHHHHHH
Confidence 578999999999999999999999999986211 123468999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhcCCCCCCCccccccccccCCCCCCCCchhHHHHHHhhhhhhhhhhhhcchHHHHHHHHhhcccCchhH
Q psy9496 126 SYVVYERCRQTLGVNMTPTSPKITLKNSYFRKHDDDNEAPSVLLLLACGTASSTCGQVCSYPLALVRTRLQAQEIDPLKV 205 (259)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~~~~~~P~d~ik~r~q~~~~~~~~~ 205 (259)
+|.+||.+|+.+... .+ ..+....+++|.++|+++.++++|+|+||+|||++...
T Consensus 84 ~f~~ye~~k~~~~~~------------------~~---~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~---- 138 (303)
T 2lck_A 84 RIGLYDSVKQFYTKG------------------SE---HAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARA---- 138 (303)
T ss_dssp TTTHHHHHHHHHSCC------------------CS---SCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSC----
T ss_pred HHHHHHHHHHHHhcC------------------Cc---CCcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhccccc----
Confidence 999999999988421 01 13457889999999999999999999999999998632
Q ss_pred HHHHhhhhccCCCccHHHHHHHHHHhhhhhhhhcccccccccccccceeeeeeC
Q psy9496 206 LKTRLALRKTGEYSSILDAAKKISAREGWKSFYRGYVPNLLGIIPYAGIDLAVY 259 (259)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~i~~~~G~~glyrG~~~~~~~~~~~~~~~~~~y 259 (259)
....+|.++++|+++|+++||++|||||+.++++|.+|..+++|.+|
T Consensus 139 -------~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i~f~~y 185 (303)
T 2lck_A 139 -------GGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAELVTY 185 (303)
T ss_dssp -------CCSSSCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------CCCCCCCCHHHHHHHHHHhcChhhhhCCccHHHHHHHHHHHHHHHHH
Confidence 12357899999999999999999999999999999999999998775
No 5
>3f2e_A SIRV coat protein; four helix bundle, virus coat protein, viral protein; HET: CIT; 1.67A {Sulfolobus islandicus rudivirus 1 variorganism_taxid}
Probab=31.61 E-value=12 Score=22.98 Aligned_cols=35 Identities=9% Similarity=0.361 Sum_probs=22.9
Q ss_pred ccCCCccHHHHHHHHHHhhhh----hhhhcccccccccc
Q psy9496 214 KTGEYSSILDAAKKISAREGW----KSFYRGYVPNLLGI 248 (259)
Q Consensus 214 ~~~~~~~~~~~~~~i~~~~G~----~glyrG~~~~~~~~ 248 (259)
+.+++.++-.-...++.+-|+ +..|.|+.....|.
T Consensus 4 nvpkftsvne~vsavltqygvtgpnraiyqgfglkvara 42 (100)
T 3f2e_A 4 NVPKFTAVAEQVSAVLSQYGITGPNRAIYQGFGLKVARA 42 (100)
T ss_dssp ----CHHHHHHHHHHHHHHTCCGGGHHHHHHHHHHHHHH
T ss_pred CCccchhHHHHHHHHHHHhcCCCccHHHHhhhhHHHHHH
Confidence 346777777777777777776 66888888766553
No 6
>3vjj_A P9-1; 3.00A {Rice black streaked dwarf virus}
Probab=24.35 E-value=35 Score=26.85 Aligned_cols=35 Identities=26% Similarity=0.347 Sum_probs=24.8
Q ss_pred hhhhhcchHHHHHHHHhhcccCchhHHHHHhhhhccCCCccHHHHHHHHHHhhhh
Q psy9496 180 CGQVCSYPLALVRTRLQAQEIDPLKVLKTRLALRKTGEYSSILDAAKKISAREGW 234 (259)
Q Consensus 180 ~~~~~~~P~d~ik~r~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~G~ 234 (259)
++++=.||||.+|-.++..- ++...+.+.+.++|+
T Consensus 274 LaTFdnypfdllRfqL~Sli--------------------stp~~I~e~i~K~GL 308 (368)
T 3vjj_A 274 LATFDNYPFDLLRFQLSSLI--------------------STPALIREKIAKEGL 308 (368)
T ss_dssp HHHCTTCBHHHHHHHCSSCC--------------------CCCHHHHHHHHHSCS
T ss_pred eecCCCCCHHHHHHHhhhhc--------------------cChHHHHHHHHhcCc
Confidence 45677899999987666543 344567777888884
No 7
>2acm_A Mucin-1; auto-catalytic proteolysis, structural protein; NMR {Homo sapiens}
Probab=20.53 E-value=22 Score=20.67 Aligned_cols=20 Identities=20% Similarity=0.414 Sum_probs=16.2
Q ss_pred CcHHHHHHHHHHhhCccccc
Q psy9496 90 LTMTSLLRHIIQTEGITGLY 109 (259)
Q Consensus 90 ~~~~~~~~~i~~~~G~~~ly 109 (259)
++..+.+.+|++++++.|++
T Consensus 40 r~is~L~lqIykq~~FLgl~ 59 (66)
T 2acm_A 40 RDISEMFLQIYKQGGFLGLS 59 (66)
T ss_dssp HHHHHHHHHHCTTTTEEEEE
T ss_pred HHHHHHHHHHHccCCeeeee
Confidence 35677888999999988876
No 8
>4b19_A PEPA1; toxin, toxin apoptotic peptide, apoptosis; NMR {Staphylococcus aureus}
Probab=14.20 E-value=26 Score=17.28 Aligned_cols=22 Identities=18% Similarity=0.079 Sum_probs=15.8
Q ss_pred HHHHhhhhhhhhhhhhcchHHH
Q psy9496 169 LLLACGTASSTCGQVCSYPLAL 190 (259)
Q Consensus 169 ~~~~~~~~ag~~~~~~~~P~d~ 190 (259)
..+++-.++|++-++++|-++.
T Consensus 5 v~iia~visGcivalF~hWL~~ 26 (30)
T 4b19_A 5 VHIIAPVISGCAIAFFSYWLSR 26 (30)
T ss_dssp TSSTTTTHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHh
Confidence 3455667788888888887763
No 9
>3tgu_G UQCRQ, mitochondrial ubiquinol-cytochrome C reductase UB binding protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein; HET: HEM WF3 UQ CDL PEE HEC BOG; 2.70A {Gallus gallus} PDB: 3cwb_G* 3h1i_G* 3h1h_G* 3h1k_G* 3h1l_G* 3h1j_G* 3l71_G* 3l72_G* 3l73_G* 3l74_G* 3l75_G* 3l70_G*
Probab=11.92 E-value=2.6e+02 Score=17.33 Aligned_cols=35 Identities=9% Similarity=0.136 Sum_probs=28.8
Q ss_pred cchhcccchHHHHhhhhhhHHHHHHHHHHHHHHhc
Q psy9496 2 GWKSFYRGYVPNLLGIIPYAGIDLAVYETLKNSYF 36 (259)
Q Consensus 2 G~~~lyrG~~~~~~~~~~~~~~~~~~~~~~~~~~~ 36 (259)
|+.-.||-+...++.-+|..++.+.++++..+...
T Consensus 33 ~i~N~~RR~~~q~l~v~pPfi~~Y~i~~Wa~~~ne 67 (81)
T 3tgu_G 33 ALPNVWRRFSSQVFKVAPPFLGAYLLYSWGTQEFE 67 (81)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHH
Confidence 56667788888888899999999999999887554
No 10
>1tlq_A Hypothetical protein YPJQ; structural genomics, NYSGXRC, T1519 protein structure initiative, NEW YORK SGX research center structural genomics; 2.40A {Bacillus subtilis} SCOP: a.195.1.1
Probab=9.12 E-value=3.5e+02 Score=19.83 Aligned_cols=46 Identities=7% Similarity=0.039 Sum_probs=27.4
Q ss_pred hHHHHHHHHHHHHH-HhcccCCCCCCChhHHHHHHHHhhhhhhhhcc
Q psy9496 20 YAGIDLAVYETLKN-SYFRKHDDDNEAPSVLLLLACGTASSTCGQVC 65 (259)
Q Consensus 20 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~ag~~~~~v 65 (259)
.....|+.+|..|. .+..-..+.....+++.-+++|++|++.+.+.
T Consensus 113 Ig~tNfGylDk~KpGIi~~Ld~k~~~v~tFLDDiVgaiaAaaaSRla 159 (189)
T 1tlq_A 113 IGLTNFGYLDKEKIGIIKELDESPDGIHTFLDDIVAALAAAAASRIA 159 (189)
T ss_dssp HHHHHHHHHHHSCCTHHHHTSSSCSCCCTTHHHHHHHHHHHHHHHHH
T ss_pred eeeeecccccccCcceeccccCCCCCccccHHHHHHHHHHHHHHHHH
Confidence 34466777777663 22222111222567888888888888877553
Done!