RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy9496
(259 letters)
>gnl|CDD|215754 pfam00153, Mito_carr, Mitochondrial carrier protein.
Length = 96
Score = 84.2 bits (209), Expect = 5e-21
Identities = 31/97 (31%), Positives = 42/97 (43%), Gaps = 12/97 (12%)
Query: 163 EAPSVLLLLACGTASSTCGQVCSYPLALVRTRLQAQEIDPLKVLKTRLALRKTGEYSSIL 222
S L L G + +YPL +V+TRLQ+ + +Y IL
Sbjct: 1 SPLSFLASLLAGGIAGAIAATVTYPLDVVKTRLQSSAA------------GGSRKYKGIL 48
Query: 223 DAAKKISAREGWKSFYRGYVPNLLGIIPYAGIDLAVY 259
D KKI EG + Y+G +PNLL + P A I Y
Sbjct: 49 DCFKKIYKEEGIRGLYKGLLPNLLRVAPAAAIYFGTY 85
Score = 80.0 bits (198), Expect = 2e-19
Identities = 31/94 (32%), Positives = 46/94 (48%), Gaps = 2/94 (2%)
Query: 44 EAPSVLLLLACGTASSTCGQVCSYPLALVRTRLQAQVLTNVPGAPELTMTSLLRHIIQTE 103
S L L G + +YPL +V+TRLQ+ + + I + E
Sbjct: 1 SPLSFLASLLAGGIAGAIAATVTYPLDVVKTRLQSS--AAGGSRKYKGILDCFKKIYKEE 58
Query: 104 GITGLYRGITPNFLKVAPAVSISYVVYERCRQTL 137
GI GLY+G+ PN L+VAPA +I + YE ++ L
Sbjct: 59 GIRGLYKGLLPNLLRVAPAAAIYFGTYETLKKLL 92
Score = 55.3 bits (134), Expect = 3e-10
Identities = 17/39 (43%), Positives = 22/39 (56%)
Query: 1 EGWKSFYRGYVPNLLGIIPYAGIDLAVYETLKNSYFRKH 39
EG + Y+G +PNLL + P A I YETLK +K
Sbjct: 58 EGIRGLYKGLLPNLLRVAPAAAIYFGTYETLKKLLLKKL 96
>gnl|CDD|240302 PTZ00169, PTZ00169, ADP/ATP transporter on adenylate translocase;
Provisional.
Length = 300
Score = 52.5 bits (126), Expect = 5e-08
Identities = 60/260 (23%), Positives = 97/260 (37%), Gaps = 59/260 (22%)
Query: 1 EGWKSFYRGYVPNLLGIIPYAGIDLAVYETLKNSYFRKHDDDNEAPSVLL--LLACGTA- 57
+G S +RG N++ P + A + KN F K++ + +L+ G A
Sbjct: 66 QGVLSLWRGNTANVIRYFPTQAFNFAFKDYFKN-MFPKYNQKTDFWKFFGVNILSGGLAG 124
Query: 58 SSTCGQVCSYPLALVRTRLQAQVLTNVPGAPELT-MTSLLRHIIQTEGITGLYRGITPNF 116
+S+ V YPL RTRL + + G E T + L I + G LY+G
Sbjct: 125 ASSLLIV--YPLDFARTRLASDIGKG--GDREFTGLFDCLMKISKQTGFLSLYQGF---- 176
Query: 117 LKVAPAVSISYVVYERCRQTLGVNMTPTSPKITLKNSYFRKHD-------DDNEAPSVLL 169
VS+ + I + +YF +D +++ ++L
Sbjct: 177 -----GVSVQGI-------------------IVYRGAYFGLYDSAKALLFGNDKNTNILY 212
Query: 170 LLACGTASSTCGQVCSYPLALVRTRLQAQEIDPLKVLKTRLALRKTGE---YSSILDAAK 226
A + + SYP VR R+ ++ RK Y+ LD K
Sbjct: 213 KWAVAQTVTILAGLISYPFDTVRRRMMM------------MSGRKAKSEIQYTGTLDCWK 260
Query: 227 KISAREGWKSFYRGYVPNLL 246
KI EG F++G N+L
Sbjct: 261 KILKNEGLGGFFKGAWANVL 280
Score = 49.8 bits (119), Expect = 4e-07
Identities = 31/120 (25%), Positives = 56/120 (46%), Gaps = 9/120 (7%)
Query: 2 GWKSFYRGYVPNLLGIIPYAGIDLAVYETLKNSYFRKHDDDNEAPSVLLLLACGTASSTC 61
G+ S Y+G+ ++ GII Y G +Y++ K F +D N ++L A +
Sbjct: 168 GFLSLYQGFGVSVQGIIVYRGAYFGLYDSAKALLFG--NDKNT--NILYKWAVAQTVTIL 223
Query: 62 GQVCSYPLALVRTRLQAQVLTNVPGAPELTMTS---LLRHIIQTEGITGLYRGITPNFLK 118
+ SYP VR R+ +++ E+ T + I++ EG+ G ++G N L+
Sbjct: 224 AGLISYPFDTVRRRM--MMMSGRKAKSEIQYTGTLDCWKKILKNEGLGGFFKGAWANVLR 281
Score = 45.1 bits (107), Expect = 1e-05
Identities = 43/167 (25%), Positives = 73/167 (43%), Gaps = 34/167 (20%)
Query: 96 LRHIIQTEGITGLYRGITPNFLKVAPAVSISYVVYERCRQTLGVNMTPTSPKITLKNSYF 155
R + + +G+ L+RG T N ++ P + ++ + + NM P + + F
Sbjct: 59 FRRVSKEQGVLSLWRGNTANVIRYFPTQAFNFAFKDYFK-----NMFPKYNQ----KTDF 109
Query: 156 RKHDDDNEAPSVLLLLACGTA-SSTCGQVCSYPLALVRTRLQAQEIDPLKVLKTRLALRK 214
K N +L+ G A +S+ V YPL RTRL + + K
Sbjct: 110 WKFFGVN-------ILSGGLAGASSLLIV--YPLDFARTRLASD-------------IGK 147
Query: 215 TG--EYSSILDAAKKISAREGWKSFYRGYVPNLLGIIPYAGIDLAVY 259
G E++ + D KIS + G+ S Y+G+ ++ GII Y G +Y
Sbjct: 148 GGDREFTGLFDCLMKISKQTGFLSLYQGFGVSVQGIIVYRGAYFGLY 194
Score = 33.2 bits (76), Expect = 0.11
Identities = 19/77 (24%), Positives = 36/77 (46%), Gaps = 6/77 (7%)
Query: 174 GTASSTCGQVCSYPLALVRTRLQAQEIDPLKVLKTRLALRKTGEYSSILDAAKKISAREG 233
G S+ + P+ V+ +Q Q+ P +K+ R YS I++ +++S +G
Sbjct: 14 GGISAAISKTAVAPIERVKMLIQTQDSIP--EIKSGKVPR----YSGIVNCFRRVSKEQG 67
Query: 234 WKSFYRGYVPNLLGIIP 250
S +RG N++ P
Sbjct: 68 VLSLWRGNTANVIRYFP 84
>gnl|CDD|232951 TIGR00389, glyS_dimeric, glycyl-tRNA synthetase, dimeric type.
This model describes a glycyl-tRNA synthetase distinct
from the two alpha and two beta chains of the tetrameric
E. coli glycyl-tRNA synthetase. This enzyme is a
homodimeric class II tRNA synthetase and is recognized
by pfam model tRNA-synt_2b, which recognizes His, Ser,
Pro, and this set of glycyl-tRNA synthetases [Protein
synthesis, tRNA aminoacylation].
Length = 551
Score = 28.7 bits (64), Expect = 3.8
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 8 RGYVPNLLGIIPYAGIDLAVYETLKNSYFRKHDDDNE 44
Y+P++ I P GID +Y L++SY + D E
Sbjct: 411 EKYIPHV--IEPSFGIDRIIYALLEHSYQEEVLDGEE 445
>gnl|CDD|185494 PTZ00168, PTZ00168, mitochondrial carrier protein; Provisional.
Length = 259
Score = 28.0 bits (62), Expect = 4.5
Identities = 46/241 (19%), Positives = 86/241 (35%), Gaps = 55/241 (22%)
Query: 4 KSFYRGYVPNLLGIIPYAGIDLAVYETLKNSYFRKHDDDNEAPSVLLLLACGTASSTCGQ 63
K Y G +P L+G +P + YE K +N + + L L++ A T
Sbjct: 43 KKLYSGILPTLVGTVPASAFFYCFYELSKK--LLTEYRENISKTNLYLISTSIAEIT-AC 99
Query: 64 VCSYPLALVRTRLQAQVLTNVPGAPELTMTSLLRHIIQTEGITGLYRGITPNFL----KV 119
+ P +V+ +Q V G S+L+ I + GL + ++ +
Sbjct: 100 IVRLPFEIVKQNMQ------VSGN-----ISVLKTIYEITQREGLPSFLGKSYFVMIVRE 148
Query: 120 APAVSISYVVYERCRQTLGVNMTPTSPKITLKNSYFRKHDDDNEAPSVLLLLACGTASST 179
P I Y ++E ++ + S K PS+ + G A
Sbjct: 149 IPFDCIQYFLWETLKEKAKKDFGKFSKKY----------------PSITSAICGGLAGGI 192
Query: 180 CGQVCSYPLALVRTRLQAQEIDPLKVLKTRLALRKTGEYSSILDAAKKISAREGWKSFYR 239
G + + P+ V+K+R + ++ + A+ EG+ +FY+
Sbjct: 193 AGFLTT----------------PVDVIKSRQIIYGKSYIETVTEIAE-----EGYLTFYK 231
Query: 240 G 240
G
Sbjct: 232 G 232
>gnl|CDD|181198 PRK08017, PRK08017, oxidoreductase; Provisional.
Length = 256
Score = 27.0 bits (60), Expect = 9.0
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 8/49 (16%)
Query: 68 PLALV-RTRLQAQVLTNVPGAPELTM---TSLLRH----IIQTEGITGL 108
PL+ + R +++ Q TN G +LTM ++L H I+ T + GL
Sbjct: 89 PLSTISRQQMEQQFSTNFFGTHQLTMLLLPAMLPHGEGRIVMTSSVMGL 137
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.137 0.408
Gapped
Lambda K H
0.267 0.0588 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 13,143,338
Number of extensions: 1202182
Number of successful extensions: 972
Number of sequences better than 10.0: 1
Number of HSP's gapped: 967
Number of HSP's successfully gapped: 18
Length of query: 259
Length of database: 10,937,602
Length adjustment: 95
Effective length of query: 164
Effective length of database: 6,723,972
Effective search space: 1102731408
Effective search space used: 1102731408
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.4 bits)