RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9496
(259 letters)
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial
transporter, nucleotide translocation, membrane protein,
transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP:
f.42.1.1 PDB: 2c3e_A*
Length = 297
Score = 196 bits (500), Expect = 4e-62
Identities = 54/260 (20%), Positives = 97/260 (37%), Gaps = 34/260 (13%)
Query: 1 EGWKSFYRGYVPNLLGIIPYAGIDLAVYETLKNSYFRKHD-DDNEAPSVLLLLACGTASS 59
+G+ SF+RG + N++ P ++ A + K + D LA G A+
Sbjct: 64 QGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAG 123
Query: 60 TCGQVCSYPLALVRTRLQAQVLTNVPGAPELTMTSLLRHIIQTEGITGLYRGITPNFLKV 119
YPL RTRL A V + + + I +++G+ GLY+G + +
Sbjct: 124 ATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGI 183
Query: 120 APAVSISYVVYERCRQTLGVNMTPTSPKITLKNSYFRKHDDDNEAPSVLLLLACGTASST 179
+ + VY+ T K + +++ +
Sbjct: 184 IIYRAAYFGVYD-----------------TAKGMLPDPKN-----VHIIVSWMIAQTVTA 221
Query: 180 CGQVCSYPLALVRTRLQAQEIDPLKVLKTRLALRKTGEYSSILDAAKKISAREGWKSFYR 239
+ SYP VR R+ Q + Y+ +D +KI+ EG K+F++
Sbjct: 222 VAGLVSYPFDTVRRRMMMQSGRKGADIM----------YTGTVDCWRKIAKDEGPKAFFK 271
Query: 240 GYVPNLLGIIPYAGIDLAVY 259
G N+L + A + L +Y
Sbjct: 272 GAWSNVLRGMGGAFV-LVLY 290
Score = 166 bits (422), Expect = 2e-50
Identities = 27/137 (19%), Positives = 51/137 (37%), Gaps = 6/137 (4%)
Query: 1 EGWKSFYRGYVPNLLGIIPYAGIDLAVYETLKNSYFRKHDDDNEAPSVLLLLACGTASST 60
+G + Y+G+ ++ GII Y VY+T K + +++ +
Sbjct: 167 DGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDPKN-----VHIIVSWMIAQTVTA 221
Query: 61 CGQVCSYPLALVRTRLQAQVLTNVPGAPELTMTSLLRHIIQTEGITGLYRGITPNFLKVA 120
+ SYP VR R+ Q R I + EG ++G N L+
Sbjct: 222 VAGLVSYPFDTVRRRMMMQSGRKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRGM 281
Query: 121 PAVSISYVVYERCRQTL 137
+ V+Y+ ++ +
Sbjct: 282 GG-AFVLVLYDEIKKFV 297
Score = 142 bits (359), Expect = 4e-41
Identities = 41/219 (18%), Positives = 76/219 (34%), Gaps = 28/219 (12%)
Query: 43 NEAPSVLLLLACGTASSTCGQVCSYPLALVRTRLQAQVLTNVPGAPE--LTMTSLLRHII 100
++A S L G ++ + P+ V+ LQ Q + A + + + I
Sbjct: 2 DQALSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIP 61
Query: 101 QTEGITGLYRGITPNFLKVAPAVSISYVVYERCRQTLGVNMTPTSPKITLKNSYFRKHDD 160
+ +G +RG N ++ P ++++ ++ +Q +
Sbjct: 62 KEQGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDR----------------H 105
Query: 161 DNEAPSVLLLLACGTASSTCGQVCSYPLALVRTRLQAQEIDPLKVLKTRLALRKTGEYSS 220
LA G A+ YPL RTRL A E++
Sbjct: 106 KQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKG----------AAQREFTG 155
Query: 221 ILDAAKKISAREGWKSFYRGYVPNLLGIIPYAGIDLAVY 259
+ + KI +G + Y+G+ ++ GII Y VY
Sbjct: 156 LGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVY 194
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton
translocator, mitochondrial carrier transport protein,
structural genomics; NMR {Mus musculus}
Length = 303
Score = 139 bits (352), Expect = 5e-40
Identities = 55/260 (21%), Positives = 98/260 (37%), Gaps = 42/260 (16%)
Query: 1 EGWKSFYRGYVPNLLGIIPYAGIDLAVYETLKNSYFRKHDDDNEAPSVLLLLACGTASST 60
EG +S Y G V L + +A + + +Y+++K Y +E + L G+ +
Sbjct: 61 EGPRSLYNGLVAGLQRQMSFASVRIGLYDSVKQFY----TKGSEHAGIGSRLLAGSTTGA 116
Query: 61 CGQVCSYPLALVRTRLQAQVLTNVPGAPELT-MTSLLRHIIQTEGITGLYRGITPNFLKV 119
+ P +V+ R QAQ G + I + EGI GL++G +PN +
Sbjct: 117 LAVAVAQPTDVVKVRFQAQ--ARAGGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARN 174
Query: 120 APAVSISYVVYERCRQTLGVNMTPTSPKITLKNSYFRKHDDDNEAPSVLLLLACGTASST 179
A V Y+ + TL LK + + +
Sbjct: 175 AIVNCAELVTYDLIKDTL------------LKANLMT--------DDLPCHFTSAFGAGF 214
Query: 180 CGQVCSYPLALVRTRLQAQEIDPLKVLKTRLALRKTGEYSSILDAAKKISAREGWKSFYR 239
C V + P+ +V+TR G+Y S A + +EG ++FY+
Sbjct: 215 CTTVIASPVDVVKTRYMNS---------------ALGQYHSAGHCALTMLRKEGPRAFYK 259
Query: 240 GYVPNLLGIIPYAGIDLAVY 259
G++P+ L + + + Y
Sbjct: 260 GFMPSFLRLGSWNVVMFVTY 279
Score = 107 bits (270), Expect = 5e-28
Identities = 38/213 (17%), Positives = 73/213 (34%), Gaps = 37/213 (17%)
Query: 52 LACGTASSTCGQVCSYPLALVRTRLQAQ-----VLTNVPGAPELTMTSLLRHIIQTEGIT 106
++ + ++PL + RLQ Q ++ A + + +++TEG
Sbjct: 5 FLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPR 64
Query: 107 GLYRGITPNFLKVAPAVSISYVVYERCRQTLGVNMTPTSPKITLKNSYFRKHDDDNEAPS 166
LY G+ + S+ +Y+ +Q +E
Sbjct: 65 SLYNGLVAGLQRQMSFASVRIGLYDSVKQFYT---------------------KGSEHAG 103
Query: 167 VLLLLACGTASSTCGQVCSYPLALVRTRLQAQEIDPLKVLKTRLALRKTGEYSSILDAAK 226
+ L G+ + + P +V+ R QAQ R + Y S ++A K
Sbjct: 104 IGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQ---------ARAGGGRR--YQSTVEAYK 152
Query: 227 KISAREGWKSFYRGYVPNLLGIIPYAGIDLAVY 259
I+ EG + ++G PN+ +L Y
Sbjct: 153 TIAREEGIRGLWKGTSPNVARNAIVNCAELVTY 185
Score = 87.4 bits (217), Expect = 2e-20
Identities = 26/137 (18%), Positives = 55/137 (40%), Gaps = 8/137 (5%)
Query: 1 EGWKSFYRGYVPNLLGIIPYAGIDLAVYETLKNSYFRKHDDDNEAPSVLLLLACGTASST 60
EG + ++G PN+ +L Y+ +K+ K + + + +
Sbjct: 158 EGIRGLWKGTSPNVARNAIVNCAELVTYDLIKD-TLLKANLMTD--DLPCHFTSAFGAGF 214
Query: 61 CGQVCSYPLALVRTRLQAQVLTNVPGAPELTMTSLLRHIIQTEGITGLYRGITPNFLKVA 120
C V + P+ +V+TR + +++ EG Y+G P+FL++
Sbjct: 215 CTTVIASPVDVVKTRYMNS-----ALGQYHSAGHCALTMLRKEGPRAFYKGFMPSFLRLG 269
Query: 121 PAVSISYVVYERCRQTL 137
+ +V YE+ ++ L
Sbjct: 270 SWNVVMFVTYEQLKRAL 286
Score = 37.3 bits (87), Expect = 0.003
Identities = 11/39 (28%), Positives = 22/39 (56%)
Query: 1 EGWKSFYRGYVPNLLGIIPYAGIDLAVYETLKNSYFRKH 39
EG ++FY+G++P+ L + + + YE LK + +
Sbjct: 252 EGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKRALMAAY 290
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 47.4 bits (112), Expect = 2e-06
Identities = 35/201 (17%), Positives = 71/201 (35%), Gaps = 60/201 (29%)
Query: 71 LVRTRLQAQVLTNVPGAPELTMTSLLRHIIQTEGITGLY-----RGITPNFLK------- 118
L++ + A+++ P + + ++L R + EG L +G T ++ +
Sbjct: 122 LIKNYITARIMAKRP-FDKKSNSALFRAV--GEGNAQLVAIFGGQGNTDDYFEELRDLYQ 178
Query: 119 -----VAPAVSISYVVYERCRQTLGVNMTPTSPKITLKNSYFRKH-------DDDNEAPS 166
V + + +TL + T+ F + ++ + P
Sbjct: 179 TYHVLVGDLI-------KFSAETL-SELIRTTLDA---EKVFTQGLNILEWLENPSNTPD 227
Query: 167 VLLLLACGTASSTCGQVCSYPL-ALVRTRLQ-AQEIDPLKVL-KTRLALRK-----TGEY 218
LL+ + S PL ++ Q A + K+L T LR TG
Sbjct: 228 KDYLLSI--------PI-SCPLIGVI----QLAHYVVTAKLLGFTPGELRSYLKGATGHS 274
Query: 219 SSILDAAKKISAREGWKSFYR 239
++ A I+ + W+SF+
Sbjct: 275 QGLV-TAVAIAETDSWESFFV 294
Score = 35.8 bits (82), Expect = 0.015
Identities = 37/274 (13%), Positives = 70/274 (25%), Gaps = 119/274 (43%)
Query: 3 WKSFYRGYVPNLLGIIPYAGIDLAVYETLKNSYFRKHDDDNEAPSVLLLLACGTASSTCG 62
W+SF+ +V + + +L G
Sbjct: 289 WESFFV-----------------SVRKAIT-----------------VLFFIGVRC---- 310
Query: 63 QVCSYPLALVRTRLQAQVLTNVPGAPELTMTSLLRHIIQTEGITGLYRGITPNFLKVAPA 122
+YP + + L N G P + +L I+ L + +V
Sbjct: 311 Y-EAYPNTSLPPSILEDSLENNEGVP----SPML-------SISNLTQE------QVQDY 352
Query: 123 VSISYVVYERCRQTLGVNMTPTSPK--ITLKNSYFRKHDDDNEAPSVLLLLACGTASSTC 180
V + L P + I+L N + V+ G S
Sbjct: 353 V-------NKTNSHL-----PAGKQVEISLVNGA-KNL--------VV----SGPPQS-- 385
Query: 181 GQVCSYPLALVRTRLQAQEIDP-LKVLKTRLALRK---TGEY--------SSIL-DAAKK 227
L + L+ + L + + RK + + S +L A+
Sbjct: 386 -------LYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDL 438
Query: 228 ISAREGWKSFYRGYVPNLLGIIPYAGIDLA--VY 259
I+ + + + D+ VY
Sbjct: 439 INKDLVKNN------------VSFNAKDIQIPVY 460
Score = 34.6 bits (79), Expect = 0.033
Identities = 19/119 (15%), Positives = 36/119 (30%), Gaps = 32/119 (26%)
Query: 18 IPYAGIDLA--VYETLKNSYFRKHDDDNEAPSVLLLLACGTASSTCGQVCSYPL---ALV 72
+ + D+ VY+T S R S+ + + P+
Sbjct: 448 VSFNAKDIQIPVYDTFDGSDLRVLSG-----SISERI--------VDCIIRLPVKWETTT 494
Query: 73 RTRLQAQVLTNV----PGAPELTMTSLLRHIIQTEGITGLYRGITPNFLKVAPAVSISY 127
+ + T++ PG + L +G TG+ R I L + P +
Sbjct: 495 QFK-----ATHILDFGPGG-ASGLGVLTHRN--KDG-TGV-RVIVAGTLDINPDDDYGF 543
Score = 33.9 bits (77), Expect = 0.062
Identities = 36/200 (18%), Positives = 53/200 (26%), Gaps = 94/200 (47%)
Query: 100 IQTEGITG--LYRGITPNFLKVAPAVSISYVVYERC----RQTLG------VNMTPTSPK 147
Q +G+ G LY+ K A V + R + T G V P +
Sbjct: 1626 SQEQGM-GMDLYK----TS-KAAQDV------WNRADNHFKDTYGFSILDIVINNPVNLT 1673
Query: 148 I--------TLKNSY----FRKHDDDN-------------------EAPSVLLLLACGTA 176
I ++ +Y F D + LL T
Sbjct: 1674 IHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSA---TQ 1730
Query: 177 SSTCGQVC----SYPLALVRTRLQAQEIDPLKVLKTRLA---LRKTGEYS---------S 220
T Q A L+++ + P A L GEY+ S
Sbjct: 1731 F-T--QPALTLMEK--AAFE-DLKSKGLIPADAT---FAGHSL---GEYAALASLADVMS 1778
Query: 221 ILDAAKKISAREGWKSFYRG 240
I + + FYRG
Sbjct: 1779 IESLVEVV--------FYRG 1790
>1xvl_A Mn transporter, MNTC protein; manganese, ABC-type transport
systems, photosynthesis, cyanobacteria, disulfide bond,
metal transport; 2.90A {Synechocystis SP} SCOP: c.92.2.2
Length = 321
Score = 29.6 bits (67), Expect = 0.83
Identities = 14/61 (22%), Positives = 24/61 (39%), Gaps = 9/61 (14%)
Query: 168 LLLLACGTASSTCGQVCSYPLALVRTRLQAQEIDPLKVLKTRLALRKTGEYSSILDAAKK 227
+ CGTA T S + V T +Q + + KVL T ++ + D +
Sbjct: 11 IRAPGCGTAEVTTSNAPSEEVTAVTTEVQGETEEKKKVLTT---------FTVLADMVQN 61
Query: 228 I 228
+
Sbjct: 62 V 62
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.4 bits (62), Expect = 1.6
Identities = 8/34 (23%), Positives = 15/34 (44%), Gaps = 10/34 (29%)
Query: 196 QAQEIDPLKVLKTRLALRKTGEYSSILDAAKKIS 229
+ Q + K L+ L L Y+ D+A ++
Sbjct: 18 EKQAL---KKLQASLKL-----YAD--DSAPALA 41
Score = 27.2 bits (59), Expect = 3.6
Identities = 6/33 (18%), Positives = 14/33 (42%), Gaps = 6/33 (18%)
Query: 97 RHIIQTEGITGLYRGITPNFLKVAPAVSISYVV 129
+ + + + LY + APA++I +
Sbjct: 20 QALKKLQASLKLY---ADD---SAPALAIKATM 46
>3tgu_G UQCRQ, mitochondrial ubiquinol-cytochrome C reductase UB binding
protein QP-C; cytochrome BC1, membrane protein, heme
protein, rieske iron protein; HET: HEM WF3 UQ CDL PEE
HEC BOG; 2.70A {Gallus gallus} PDB: 3cwb_G* 3h1i_G*
3h1h_G* 3h1k_G* 3h1l_G* 3h1j_G* 3l71_G* 3l72_G* 3l73_G*
3l74_G* 3l75_G* 3l70_G*
Length = 81
Score = 26.3 bits (58), Expect = 3.3
Identities = 8/35 (22%), Positives = 17/35 (48%)
Query: 102 TEGITGLYRGITPNFLKVAPAVSISYVVYERCRQT 136
++ + ++R + KVAP +Y++Y Q
Sbjct: 31 SDALPNVWRRFSSQVFKVAPPFLGAYLLYSWGTQE 65
>4b29_A Dimethylsulfoniopropionate lyase; hydrolase, dimethylsulfide,
sulphur cycle; 1.72A {Roseovarius nubinhibens ism}
Length = 217
Score = 27.5 bits (60), Expect = 3.8
Identities = 8/57 (14%), Positives = 17/57 (29%), Gaps = 1/57 (1%)
Query: 184 CSYPLALVRTRLQAQEIDPLKVLKTRLALRKTGEYSSILDAAKKISAREGWKSFYRG 240
++P L A + + L + + + DA + W+ Y
Sbjct: 49 ATWPEDLRWADRPAHALPVIDHLTRDPGH-ASDQSQPLRDALVAAAPHVEWRHSYTE 104
>1pp9_G Ubiquinol-cytochrome C reductase complex ubiquino protein QP-C;
cytochrome BC1, membrane protein, heme protein, rieske
iron protein, cytochrome B, complex III; HET: BHG HEM
HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.23.13.1
PDB: 1bgy_G* 1be3_G* 1l0n_G* 1ntk_G* 1ntm_G* 1ntz_G*
1nu1_G* 1l0l_G* 1ppj_G* 1sqb_G* 1sqp_G* 1sqq_G* 1sqv_G*
1sqx_G* 2a06_G* 2fyu_G* 2ybb_G* 1bcc_G* 2bcc_G* 3bcc_G*
...
Length = 81
Score = 25.6 bits (56), Expect = 5.4
Identities = 11/35 (31%), Positives = 16/35 (45%)
Query: 102 TEGITGLYRGITPNFLKVAPAVSISYVVYERCRQT 136
++GI + R L+VAP Y+VY Q
Sbjct: 31 SKGIPNVLRRTRACILRVAPPFVAFYLVYTWGTQE 65
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.137 0.408
Gapped
Lambda K H
0.267 0.0485 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,902,582
Number of extensions: 215724
Number of successful extensions: 451
Number of sequences better than 10.0: 1
Number of HSP's gapped: 427
Number of HSP's successfully gapped: 21
Length of query: 259
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 167
Effective length of database: 4,133,061
Effective search space: 690221187
Effective search space used: 690221187
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.9 bits)