RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy9496
         (259 letters)



>d1okca_ f.42.1.1 (A:) ADP,ATP carrier protein {Cow (Bos taurus),
           heart isoform t1 [TaxId: 9913]}
          Length = 292

 Score = 77.8 bits (190), Expect = 2e-17
 Identities = 53/260 (20%), Positives = 98/260 (37%), Gaps = 34/260 (13%)

Query: 1   EGWKSFYRGYVPNLLGIIPYAGIDLAVYETLKNSYFRKHDDDNEAPSVLLL-LACGTASS 59
           +G+ SF+RG + N++   P   ++ A  +  K  +    D   +        LA G A+ 
Sbjct: 63  QGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAG 122

Query: 60  TCGQVCSYPLALVRTRLQAQVLTNVPGAPELTMTSLLRHIIQTEGITGLYRGITPNFLKV 119
                  YPL   RTRL A V           + + +  I +++G+ GLY+G   +   +
Sbjct: 123 ATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGI 182

Query: 120 APAVSISYVVYERCRQTLGVNMTPTSPKITLKNSYFRKHDDDNEAPSVLLLLACGTASST 179
               +  + VY+  +                          D +   +++        + 
Sbjct: 183 IIYRAAYFGVYDTAKG----------------------MLPDPKNVHIIVSWMIAQTVTA 220

Query: 180 CGQVCSYPLALVRTRLQAQEIDPLKVLKTRLALRKTGEYSSILDAAKKISAREGWKSFYR 239
              + SYP   VR R+  Q       +           Y+  +D  +KI+  EG K+F++
Sbjct: 221 VAGLVSYPFDTVRRRMMMQSGRKGADIM----------YTGTVDCWRKIAKDEGPKAFFK 270

Query: 240 GYVPNLLGIIPYAGIDLAVY 259
           G   N+L  +  A + L +Y
Sbjct: 271 GAWSNVLRGMGGAFV-LVLY 289



 Score = 73.6 bits (179), Expect = 6e-16
 Identities = 26/130 (20%), Positives = 47/130 (36%), Gaps = 6/130 (4%)

Query: 2   GWKSFYRGYVPNLLGIIPYAGIDLAVYETLKNSYFRKHDDDNEAPSVLLLLACGTASSTC 61
           G +  Y+G+  ++ GII Y      VY+       +    D +   +++        +  
Sbjct: 167 GLRGLYQGFNVSVQGIIIYRAAYFGVYD-----TAKGMLPDPKNVHIIVSWMIAQTVTAV 221

Query: 62  GQVCSYPLALVRTRLQAQVLTNVPGAPELTMTSLLRHIIQTEGITGLYRGITPNFLKVAP 121
             + SYP   VR R+  Q                 R I + EG    ++G   N L+   
Sbjct: 222 AGLVSYPFDTVRRRMMMQSGRKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRGMG 281

Query: 122 AVSISYVVYE 131
             +   V+Y+
Sbjct: 282 G-AFVLVLYD 290



 Score = 59.3 bits (142), Expect = 6e-11
 Identities = 39/219 (17%), Positives = 74/219 (33%), Gaps = 28/219 (12%)

Query: 43  NEAPSVLLLLACGTASSTCGQVCSYPLALVRTRLQAQVLTNVPGAPEL--TMTSLLRHII 100
           ++A S L     G  ++   +    P+  V+  LQ Q  +    A +    +   +  I 
Sbjct: 1   DQALSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIP 60

Query: 101 QTEGITGLYRGITPNFLKVAPAVSISYVVYERCRQTLGVNMTPTSPKITLKNSYFRKHDD 160
           + +G    +RG   N ++  P  ++++   ++ +Q     +                   
Sbjct: 61  KEQGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLA---- 116

Query: 161 DNEAPSVLLLLACGTASSTCGQVCSYPLALVRTRLQAQEIDPLKVLKTRLALRKTGEYSS 220
                        G A+        YPL   RTRL A                   E++ 
Sbjct: 117 ------------SGGAAGATSLCFVYPLDFARTRLAADVGKG----------AAQREFTG 154

Query: 221 ILDAAKKISAREGWKSFYRGYVPNLLGIIPYAGIDLAVY 259
           + +   KI   +G +  Y+G+  ++ GII Y      VY
Sbjct: 155 LGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVY 193


>d1atia2 d.104.1.1 (A:1-394) Glycyl-tRNA synthetase (GlyRS) {Thermus
           thermophilus [TaxId: 274]}
          Length = 394

 Score = 27.7 bits (61), Expect = 1.5
 Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 2/42 (4%)

Query: 10  YVPNLLGIIPYAGIDLAVYETLKNSYFRKHDDDNEAPSVLLL 51
           +VP +  I P AG+D  V   L  ++ R+   + E   VL L
Sbjct: 353 FVPYV--IEPSAGVDRGVLALLAEAFTREELPNGEERIVLKL 392


>d1b76a2 d.104.1.1 (A:1-394) Glycyl-tRNA synthetase (GlyRS) {Thermus
           thermophilus [TaxId: 274]}
          Length = 331

 Score = 26.3 bits (57), Expect = 4.5
 Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 2/42 (4%)

Query: 10  YVPNLLGIIPYAGIDLAVYETLKNSYFRKHDDDNEAPSVLLL 51
           +VP +  I P AG+D  V   L  ++ R+   + E   VL L
Sbjct: 290 FVPYV--IEPSAGVDRGVLALLAEAFTREELPNGEERIVLKL 329


>d1ppjg_ f.23.13.1 (G:) Ubiquinone-binding protein QP-C of
           cytochrome bc1 complex (Ubiquinol-cytochrome c
           reductase) {Cow (Bos taurus) [TaxId: 9913]}
          Length = 75

 Score = 24.2 bits (53), Expect = 5.3
 Identities = 10/28 (35%), Positives = 13/28 (46%)

Query: 104 GITGLYRGITPNFLKVAPAVSISYVVYE 131
           GI  + R      L+VAP     Y+VY 
Sbjct: 33  GIPNVLRRTRACILRVAPPFVAFYLVYT 60


>d3cx5h1 f.23.13.1 (H:2-94) Ubiquinone-binding protein QP-C of
           cytochrome bc1 complex (Ubiquinol-cytochrome c
           reductase) {Baker's yeast (Saccharomyces cerevisiae)
           [TaxId: 4932]}
          Length = 93

 Score = 24.7 bits (54), Expect = 5.8
 Identities = 5/32 (15%), Positives = 11/32 (34%)

Query: 104 GITGLYRGITPNFLKVAPAVSISYVVYERCRQ 135
            +   +R     FL V     I +  ++   +
Sbjct: 43  AVFNSFRRFKSQFLYVLIPAGIYWYWWKNGNE 74


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.137    0.408 

Gapped
Lambda     K      H
   0.267   0.0676    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 937,578
Number of extensions: 39277
Number of successful extensions: 90
Number of sequences better than 10.0: 1
Number of HSP's gapped: 84
Number of HSP's successfully gapped: 7
Length of query: 259
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 176
Effective length of database: 1,268,006
Effective search space: 223169056
Effective search space used: 223169056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (23.9 bits)