BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy9498
         (240 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P23253|TCNA_TRYCR Sialidase OS=Trypanosoma cruzi GN=TCNA PE=2 SV=1
          Length = 1162

 Score = 38.1 bits (87), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 75/177 (42%), Positives = 81/177 (45%), Gaps = 22/177 (12%)

Query: 47  PTDLSTVVTPSLPNPTDLNIAKTPSVPSPTDRSTAETPSLPNPTDLSTVVTPSLPNPTDL 106
           P D S   TPS   P D +   TPS P+  D S   TPS   P D S   TPS   P D 
Sbjct: 603 PADSSAHSTPS--TPVDSSAHSTPSTPA--DSSAHGTPS--TPVDSSAHGTPS--TPADS 654

Query: 107 STVETPNLP-DRSTAETPSLPNPTDRSTVVTPSLPNPTDRSTVETPNLP-DRSTAETPSL 164
           S   TP+ P D S   TPS   P D S   TPS   P D S    P+ P D S   TPS 
Sbjct: 655 SAHGTPSTPVDSSAHSTPS--TPVDSSAHSTPS--TPVDSSAHGAPSTPADSSAHGTPS- 709

Query: 165 PNPTDLSTVETPSVPSPTDRSTAETPSLPSPTDRSTAETPSLPNPTDLSTAETPSLP 221
             P D S   TPS P+  D S   TPS  +P D S   TPS   P D S   TPS P
Sbjct: 710 -TPVDSSAHGTPSTPA--DSSAHSTPS--TPADSSAHSTPS--TPADSSAHSTPSTP 759


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.300    0.120    0.340 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 108,692,225
Number of Sequences: 539616
Number of extensions: 5740998
Number of successful extensions: 51415
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 451
Number of HSP's successfully gapped in prelim test: 2147
Number of HSP's that attempted gapping in prelim test: 21189
Number of HSP's gapped (non-prelim): 13365
length of query: 240
length of database: 191,569,459
effective HSP length: 114
effective length of query: 126
effective length of database: 130,053,235
effective search space: 16386707610
effective search space used: 16386707610
T: 11
A: 40
X1: 17 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.7 bits)
S2: 59 (27.3 bits)