Query psy9498
Match_columns 240
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 46136
Date Fri Aug 16 20:54:21 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9498.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9498hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF08807 DUF1798: Bacterial do 3.2 3.2E+02 0.007 21.1 -0.6 10 229-238 74-83 (111)
2 PF05109 Herpes_BLLF1: Herpes 2.6 5.3E+02 0.011 26.6 0.0 55 57-113 470-524 (830)
3 cd05507 Bromo_brd8_like Bromod 2.5 3.8E+02 0.0082 19.6 -0.8 12 4-15 39-50 (104)
4 KOG2418|consensus 2.3 2.7E+03 0.059 20.5 4.3 15 213-227 246-260 (448)
5 PF08504 RunxI: Runx inhibitio 2.2 3.3E+03 0.071 16.3 4.6 22 84-105 51-72 (101)
6 PF15050 SCIMP: SCIMP protein 2.2 1.9E+03 0.041 18.4 2.7 13 144-156 63-75 (133)
7 PHA02757 hypothetical protein; 2.0 9.7E+02 0.021 18.5 0.8 17 50-68 15-31 (75)
8 PF09468 RNase_H2-Ydr279: Ydr2 2.0 6.8E+02 0.015 20.8 -0.2 19 4-22 6-24 (304)
9 cd05508 Bromo_RACK7 Bromodomai 1.9 5.4E+02 0.012 19.0 -0.7 12 4-15 38-49 (99)
10 cd05505 Bromo_WSTF_like Bromod 1.9 5.6E+02 0.012 18.7 -0.7 12 4-15 36-47 (97)
No 1
>PF08807 DUF1798: Bacterial domain of unknown function (DUF1798); InterPro: IPR014913 This family contains many hypothetical proteins. The structure of one of them has been solved and it adopts an all alpha helical fold. ; PDB: 2HUJ_A 2ETS_A 2HFI_A 2IM8_B.
Probab=3.22 E-value=3.2e+02 Score=21.13 Aligned_cols=10 Identities=60% Similarity=0.989 Sum_probs=7.0
Q ss_pred hhhhcceeec
Q psy9498 229 AETLSLQCFT 238 (240)
Q Consensus 229 aetlslqcft 238 (240)
.+.+++|||-
T Consensus 74 i~~lsVq~f~ 83 (111)
T PF08807_consen 74 IEELSVQCFF 83 (111)
T ss_dssp HHHHHHHTTH
T ss_pred HHHHHHHHhC
Confidence 4567888874
No 2
>PF05109 Herpes_BLLF1: Herpes virus major outer envelope glycoprotein (BLLF1); InterPro: IPR007796 This family consists of the viral late glycoprotein BLLF1, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo. The binding of the viral major glycoprotein BLLF1 to the CD21 cellular receptor is thought to play an essential role during infection of B lymphocytes by the Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4) []. ; GO: 0019058 viral infectious cycle, 0019031 viral envelope; PDB: 2H6O_A.
Probab=2.59 E-value=5.3e+02 Score=26.61 Aligned_cols=55 Identities=40% Similarity=0.583 Sum_probs=0.0
Q ss_pred CCCCCCCcccccCCCCCCCCCCCccCCCCCCCCCCCceeecCCCCCCCCCCcccCCC
Q psy9498 57 SLPNPTDLNIAKTPSVPSPTDRSTAETPSLPNPTDLSTVVTPSLPNPTDLSTVETPN 113 (240)
Q Consensus 57 slpnptdlniaktpsvpsptdrstaetpslpnptdlstvvtpslpnptdlstvetpn 113 (240)
-++.|+..--.|.|.+-+|+.|++..+|..-.|+..++ ||..-.|+-.++-.|||
T Consensus 470 Ts~tptG~tss~~p~~tsPTS~~tt~tpnatspt~~~t--tpnatspT~~kTs~tpn 524 (830)
T PF05109_consen 470 TSPTPTGTTSSKAPDMTSPTSAVTTPTPNATSPTPAVT--TPNATSPTSGKTSPTPN 524 (830)
T ss_dssp ---------------------------------------------------------
T ss_pred CCCccCccccccCCcCCCCCcccccCCCCCCCCCcccc--cccccccccccccCCCC
Confidence 34555555556777788888888777776666665554 55555555555544444
No 3
>cd05507 Bromo_brd8_like Bromodomain, brd8_like subgroup. In mammals, brd8 (bromodomain containing 8) interacts with the thyroid hormone receptor in a ligand-dependent fashion and enhances thyroid hormone-dependent activation from thyroid response elements. Brd8 is thought to be a nuclear receptor coactivator. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=2.53 E-value=3.8e+02 Score=19.56 Aligned_cols=12 Identities=42% Similarity=0.744 Sum_probs=7.5
Q ss_pred cCCCCCCCCcee
Q psy9498 4 ILPNPTDLSTVE 15 (240)
Q Consensus 4 ilpnptdlstve 15 (240)
|+-+|.||+|++
T Consensus 39 iIk~PmDL~tI~ 50 (104)
T cd05507 39 VVYRPMDLSTIK 50 (104)
T ss_pred HhCCCcCHHHHH
Confidence 445677777665
No 4
>KOG2418|consensus
Probab=2.27 E-value=2.7e+03 Score=20.47 Aligned_cols=15 Identities=47% Similarity=0.809 Sum_probs=7.7
Q ss_pred CccCCCCCCCCCCcc
Q psy9498 213 STAETPSLPNPPDRS 227 (240)
Q Consensus 213 staetpslpnppdrs 227 (240)
|-+.||.+|.+|.++
T Consensus 246 Sy~rTp~~P~pp~~~ 260 (448)
T KOG2418|consen 246 SYARTPPSPRPPSKM 260 (448)
T ss_pred CCCCCCCCCCCCCcc
Confidence 445555555555443
No 5
>PF08504 RunxI: Runx inhibition domain; InterPro: IPR013711 This domain lies to the C terminus of Runx-related transcription factors and homologous proteins (AML, CBF-alpha, PEBP2). Its function might be to interact with functional cofactors [].
Probab=2.22 E-value=3.3e+03 Score=16.33 Aligned_cols=22 Identities=41% Similarity=0.709 Sum_probs=14.9
Q ss_pred CCCCCCCCCceeecCCCCCCCC
Q psy9498 84 PSLPNPTDLSTVVTPSLPNPTD 105 (240)
Q Consensus 84 pslpnptdlstvvtpslpnptd 105 (240)
+.-.|..--+..+-|+|+|..|
T Consensus 51 ~~ct~astg~~llnP~L~~q~d 72 (101)
T PF08504_consen 51 PPCTNASTGSSLLNPSLPNQSD 72 (101)
T ss_pred CCCcCCCccccccCCCCCCccc
Confidence 4444555556778888888887
No 6
>PF15050 SCIMP: SCIMP protein
Probab=2.16 E-value=1.9e+03 Score=18.41 Aligned_cols=13 Identities=46% Similarity=0.823 Sum_probs=6.1
Q ss_pred CCCcccCCCCCCC
Q psy9498 144 DRSTVETPNLPDR 156 (240)
Q Consensus 144 drstvetpnlpdr 156 (240)
+.+.+.-|-||-|
T Consensus 63 n~~~~~LPpLPPR 75 (133)
T PF15050_consen 63 NQSPVQLPPLPPR 75 (133)
T ss_pred cCCcCCCCCCCCC
Confidence 3444444555544
No 7
>PHA02757 hypothetical protein; Provisional
Probab=2.05 E-value=9.7e+02 Score=18.45 Aligned_cols=17 Identities=53% Similarity=0.577 Sum_probs=12.3
Q ss_pred CceeecCCCCCCCCccccc
Q psy9498 50 LSTVVTPSLPNPTDLNIAK 68 (240)
Q Consensus 50 lstvvtpslpnptdlniak 68 (240)
---||||+- |-|+|||-
T Consensus 15 nvCViTPsg--pfDFni~C 31 (75)
T PHA02757 15 NVCVITPSG--PFDFNIAC 31 (75)
T ss_pred CEEEEeCCC--CccEEEEc
Confidence 456889985 46888874
No 8
>PF09468 RNase_H2-Ydr279: Ydr279p protein family (RNase H2 complex component); InterPro: IPR019024 This entry represents the non-catalytic subunit B of RNase H2, an endonuclease that specifically degrades RNA when annealed to a complementary DNA, and which is present in all eukaryotic organisms. RNase H2 participates in DNA replication, possibly by mediating the removal of lagging-strand Okazaki fragment RNA primers during DNA replication. It mediates the excision of single ribonucleotides from DNA:RNA duplexes. In Saccharomyces cerevisiae (Baker's yeast), RNase H2 is a heterotrimer composed of the catalytic subunit RNH201 and of the non-catalytic subunits RNH202 and RNH203 (or Rnh2Ap, Ydr279p and Ylr154p); this family represents the homologues of RNH202 (or Ydr279p) []. It is not known whether non yeast proteins in this family fulfil the same function. ; GO: 0005634 nucleus; PDB: 3KIO_B 3P5J_B 3P56_E 3PUF_H 3P87_J.
Probab=2.01 E-value=6.8e+02 Score=20.84 Aligned_cols=19 Identities=37% Similarity=0.786 Sum_probs=6.8
Q ss_pred cCCCCCCCCceeeccCCCC
Q psy9498 4 ILPNPTDLSTVETLSLPNP 22 (240)
Q Consensus 4 ilpnptdlstvetlslpnp 22 (240)
|||........+.+.||+|
T Consensus 6 iLP~~~~~~~~~iv~LphP 24 (304)
T PF09468_consen 6 ILPKSASSSSLRIVTLPHP 24 (304)
T ss_dssp EEECCGCTT-EEEEEEE-T
T ss_pred EeCCCCCCCcceEEEcCCC
Confidence 3333333333444444444
No 9
>cd05508 Bromo_RACK7 Bromodomain, RACK7_like subfamily. RACK7 (also called human protein kinase C-binding protein) was identified as a potential tumor suppressor genes, it shares domain architecture with BS69/ZMYND11; both have been implicated in the regulation of cellular proliferation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=1.94 E-value=5.4e+02 Score=18.97 Aligned_cols=12 Identities=50% Similarity=0.664 Sum_probs=7.7
Q ss_pred cCCCCCCCCcee
Q psy9498 4 ILPNPTDLSTVE 15 (240)
Q Consensus 4 ilpnptdlstve 15 (240)
|+-+|.||+|++
T Consensus 38 iIk~PmDL~tI~ 49 (99)
T cd05508 38 YVFKPMDLSTLE 49 (99)
T ss_pred HcCCCCCHHHHH
Confidence 455677777664
No 10
>cd05505 Bromo_WSTF_like Bromodomain; Williams syndrome transcription factor-like subfamily (WSTF-like). The Williams-Beuren syndrome deletion transcript 9 is a putative transcriptional regulator. WSTF was found to play a role in vitamin D-mediated transcription as part of two chromatin remodeling complexes, WINAC and WICH. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=1.88 E-value=5.6e+02 Score=18.69 Aligned_cols=12 Identities=42% Similarity=0.874 Sum_probs=7.7
Q ss_pred cCCCCCCCCcee
Q psy9498 4 ILPNPTDLSTVE 15 (240)
Q Consensus 4 ilpnptdlstve 15 (240)
|+.+|.||+|++
T Consensus 36 iIk~PmDL~tI~ 47 (97)
T cd05505 36 VITNPMDLQTMQ 47 (97)
T ss_pred HcCCcCCHHHHH
Confidence 456677777664
Done!