Query psy9498
Match_columns 240
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 29240
Date Fri Aug 16 20:54:58 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9498.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9498hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ets_A Hypothetical protein; s 3.0 2.3E+02 0.0078 21.8 -0.6 10 229-238 86-95 (128)
2 2hfi_A Hypothetical protein YP 2.8 2.2E+02 0.0074 21.8 -0.8 10 229-238 82-91 (131)
3 2jvu_A Dispersin; beta sandwic 2.7 2.4E+02 0.0083 21.4 -0.6 23 49-71 59-81 (104)
4 2huj_A LIN2004 protein; hypoth 2.6 2.6E+02 0.009 21.7 -0.6 10 229-238 98-107 (140)
5 1bom_B Bombyxin-II,bombyxin A- 2.1 4.4E+02 0.015 16.0 0.1 14 225-238 11-24 (28)
6 3nxb_A CAT eye syndrome critic 1.8 3.6E+02 0.012 18.5 -0.8 12 4-15 52-63 (116)
7 1jiw_I Proteinase inhibitor; p 1.8 3.1E+02 0.011 20.4 -1.3 11 2-12 2-12 (106)
8 1sp8_A 4-hydroxyphenylpyruvate 1.6 7.2E+02 0.025 20.6 0.6 8 232-239 352-359 (418)
9 3d7c_A General control of amin 1.6 4.1E+02 0.014 18.1 -0.8 12 4-15 43-54 (112)
10 3mb4_A Protein polybromo-1; PB 1.6 4.2E+02 0.014 18.5 -0.8 12 4-15 57-68 (124)
No 1
>2ets_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.25A {Staphylococcus aureus subsp} SCOP: a.24.26.1
Probab=2.96 E-value=2.3e+02 Score=21.84 Aligned_cols=10 Identities=40% Similarity=0.723 Sum_probs=7.2
Q ss_pred hhhhcceeec
Q psy9498 229 AETLSLQCFT 238 (240)
Q Consensus 229 aetlslqcft 238 (240)
.+.+++|||-
T Consensus 86 ie~lsVq~f~ 95 (128)
T 2ets_A 86 IEQLSVECHF 95 (128)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHHHHhC
Confidence 4667888884
No 2
>2hfi_A Hypothetical protein YPPE; YPPE_bacsu, GFT structural genomics, PSI, protein structure initiative, northeast structural genomics consortium; NMR {Bacillus subtilis} SCOP: a.24.26.1 PDB: 2im8_A
Probab=2.84 E-value=2.2e+02 Score=21.78 Aligned_cols=10 Identities=30% Similarity=0.325 Sum_probs=6.7
Q ss_pred hhhhcceeec
Q psy9498 229 AETLSLQCFT 238 (240)
Q Consensus 229 aetlslqcft 238 (240)
.+.+++|||-
T Consensus 82 ie~lsVq~f~ 91 (131)
T 2hfi_A 82 FLELVLQSYV 91 (131)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhC
Confidence 3567778874
No 3
>2jvu_A Dispersin; beta sandwich, unknown function; NMR {Escherichia coli}
Probab=2.74 E-value=2.4e+02 Score=21.44 Aligned_cols=23 Identities=43% Similarity=0.572 Sum_probs=17.7
Q ss_pred CCceeecCCCCCCCCcccccCCC
Q psy9498 49 DLSTVVTPSLPNPTDLNIAKTPS 71 (240)
Q Consensus 49 dlstvvtpslpnptdlniaktps 71 (240)
.+..|||||-|--+.-.|.||-.
T Consensus 59 nfkgvvtpstpvntnqdinktnk 81 (104)
T 2jvu_A 59 NFKGVVTPSTPVNTNQDINKTNK 81 (104)
T ss_dssp EEEEEEBTTBCEECCSCHHHHHH
T ss_pred ccceeECCCCcccccccccccch
Confidence 35578999999888888877643
No 4
>2huj_A LIN2004 protein; hypothetical protein, structural genomics, PSI- protein structure initiative, joint center for structural G JCSG; 1.74A {Listeria innocua} SCOP: a.24.26.1
Probab=2.64 E-value=2.6e+02 Score=21.68 Aligned_cols=10 Identities=10% Similarity=0.368 Sum_probs=7.0
Q ss_pred hhhhcceeec
Q psy9498 229 AETLSLQCFT 238 (240)
Q Consensus 229 aetlslqcft 238 (240)
.+.+++|||-
T Consensus 98 ie~lsVq~f~ 107 (140)
T 2huj_A 98 VQMTAVSAFN 107 (140)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHHHHhC
Confidence 4567888874
No 5
>1bom_B Bombyxin-II,bombyxin A-6; insulin-like brain-secretory peptide; HET: PCA; NMR {Bombyx mori} SCOP: g.1.1.1 PDB: 1bon_B*
Probab=2.14 E-value=4.4e+02 Score=15.97 Aligned_cols=14 Identities=36% Similarity=0.551 Sum_probs=10.5
Q ss_pred Ccchhhhhcceeec
Q psy9498 225 DRSTAETLSLQCFT 238 (240)
Q Consensus 225 drstaetlslqcft 238 (240)
.|-.|++|+.-|+-
T Consensus 11 GR~La~tLa~LC~~ 24 (28)
T 1bom_B 11 GRHLARTLADLCWE 24 (28)
T ss_dssp SSTTTTGGGTHHHH
T ss_pred HHHHHHHHHHHccc
Confidence 36678888888863
No 6
>3nxb_A CAT eye syndrome critical region protein 2; structural genomics consortium, SGC, CECR2, CAT eye syndrome chromosome region candidate 2, bromodomain; 1.83A {Homo sapiens} SCOP: a.29.2.0
Probab=1.81 E-value=3.6e+02 Score=18.48 Aligned_cols=12 Identities=42% Similarity=0.814 Sum_probs=7.1
Q ss_pred cCCCCCCCCcee
Q psy9498 4 ILPNPTDLSTVE 15 (240)
Q Consensus 4 ilpnptdlstve 15 (240)
|+.+|-||++++
T Consensus 52 ~I~~Pmdl~tI~ 63 (116)
T 3nxb_A 52 IIKAPMDISSME 63 (116)
T ss_dssp HCSSCCCHHHHH
T ss_pred HcCCCCCHHHHH
Confidence 345666666654
No 7
>1jiw_I Proteinase inhibitor; pseudomonas aeruginosa alkaline protease inhibitor, hydrolase/hyrolase inhibitor complex; 1.74A {Pseudomonas aeruginosa} SCOP: b.61.2.1 PDB: 2rn4_A
Probab=1.76 E-value=3.1e+02 Score=20.39 Aligned_cols=11 Identities=55% Similarity=0.739 Sum_probs=5.3
Q ss_pred cccCCCCCCCC
Q psy9498 2 SLILPNPTDLS 12 (240)
Q Consensus 2 slilpnptdls 12 (240)
||.||++.+|+
T Consensus 2 SL~LP~~a~La 12 (106)
T 1jiw_I 2 SLILLSASDLA 12 (106)
T ss_dssp BCCCCCHHHHC
T ss_pred CccCCChHHhc
Confidence 45555544444
No 8
>1sp8_A 4-hydroxyphenylpyruvate dioxygenase; oxidoreductase; 2.00A {Zea mays} SCOP: d.32.1.3 d.32.1.3
Probab=1.64 E-value=7.2e+02 Score=20.64 Aligned_cols=8 Identities=63% Similarity=0.750 Sum_probs=4.2
Q ss_pred hcceeecc
Q psy9498 232 LSLQCFTK 239 (240)
Q Consensus 232 lslqcftk 239 (240)
+-||+|||
T Consensus 352 ~llqift~ 359 (418)
T 1sp8_A 352 VLLQIFTK 359 (418)
T ss_dssp EEEEEEBC
T ss_pred eEEEEEec
Confidence 34555554
No 9
>3d7c_A General control of amino acid synthesis protein 5; GCN5, bromodomain, structural genomics consortium, SGC, HOST-virus interaction, nucleus; 2.06A {Homo sapiens} SCOP: a.29.2.1 PDB: 1f68_A 1jm4_B* 1n72_A 1wug_A* 1wum_A* 1zs5_A* 2rnw_A* 2rnx_A* 3gg3_A
Probab=1.61 E-value=4.1e+02 Score=18.12 Aligned_cols=12 Identities=33% Similarity=0.603 Sum_probs=0.0
Q ss_pred cCCCCCCCCcee
Q psy9498 4 ILPNPTDLSTVE 15 (240)
Q Consensus 4 ilpnptdlstve 15 (240)
|+.+|-||+|++
T Consensus 43 iIk~PmdL~tI~ 54 (112)
T 3d7c_A 43 VIRFPIDLKTMT 54 (112)
T ss_dssp HCSSCCCHHHHH
T ss_pred HccCCcCHHHHH
No 10
>3mb4_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 1.66A {Homo sapiens} PDB: 3g0j_A 2yqd_A
Probab=1.59 E-value=4.2e+02 Score=18.47 Aligned_cols=12 Identities=17% Similarity=0.576 Sum_probs=0.0
Q ss_pred cCCCCCCCCcee
Q psy9498 4 ILPNPTDLSTVE 15 (240)
Q Consensus 4 ilpnptdlstve 15 (240)
|+.+|-||++++
T Consensus 57 iI~~PmdL~tI~ 68 (124)
T 3mb4_A 57 TIKKPMDMEKIR 68 (124)
T ss_dssp HCSSCCCHHHHH
T ss_pred HcCCCCCHHHHH
Done!