RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy9498
(240 letters)
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional.
Length = 3151
Score = 40.3 bits (94), Expect = 6e-04
Identities = 46/235 (19%), Positives = 63/235 (26%), Gaps = 19/235 (8%)
Query: 6 PNPTDLSTVETLSLPNPLDRNTTETPSPTDRSTADTPSVPSPTDLSTVVTPSLPNPTDLN 65
P P + P P SP + P+VP+ PT
Sbjct: 2706 PTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTT-- 2763
Query: 66 IAKTPSVPSPTDRSTAETPSLPNPTDLS-TVVTPSLPNPTDLSTVETPNLPDRS---TAE 121
A P+ P + L P S + SLP+P D + L + A
Sbjct: 2764 -AGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAA 2822
Query: 122 TPSLPNPTDRSTVVTPSLPNPTDRSTVETP------------NLPDRSTAETPSLPNPTD 169
+P+ P P S T P P P RS A P+ P
Sbjct: 2823 SPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPARPP 2882
Query: 170 LSTVETPSVPSPTDRSTAETPSLPSPTDRSTAETPSLPNPTDLSTAETPSLPNPP 224
+ + P+V T+ P P P P PP
Sbjct: 2883 VRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPP 2937
Score = 39.2 bits (91), Expect = 0.001
Identities = 41/211 (19%), Positives = 56/211 (26%), Gaps = 12/211 (5%)
Query: 30 TPSPTDRSTADTPSVPSPTDLSTVVTPSLPNPTDLNIAKTPSVPSPTDRSTAETPS---- 85
T + S+PSP D + L L A +P+ P P S T
Sbjct: 2784 TRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPP 2843
Query: 86 --LPNPTDLSTVVTPSLP---NPTDLSTVETPNLPDRSTAETPSLPNPTDRSTVVTPSLP 140
P L V P P S P P R + P + RST P
Sbjct: 2844 GPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPARPPVRRLARPAVS-RSTESFALPP 2902
Query: 141 NPTDRSTVETPNLPDRSTAETPSLPNPTDLSTVETPSVPSPTDRSTAETPSLPSPTDRST 200
+ +R P P + P P P P P T + P+
Sbjct: 2903 DQPERP--PQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVP 2960
Query: 201 AETPSLPNPTDLSTAETPSLPNPPDRSTAET 231
P ++ P R +
Sbjct: 2961 QPWLGALVPGRVAVPRFRVPQPAPSREAPAS 2991
Score = 34.9 bits (80), Expect = 0.033
Identities = 33/164 (20%), Positives = 44/164 (26%), Gaps = 15/164 (9%)
Query: 70 PSVPSPTDRSTAETPSLPNPTDLSTVVTPSLPNPTDLSTVETPNLPDRSTAETPSLPNPT 129
P P+P A + P P + S P + P P P
Sbjct: 2703 PPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPAR----PA 2758
Query: 130 DRSTVVTPSLPNPTDRSTVETPNLPDRSTAETPSLPNPTDLS-TVETPSVPSPTDRSTAE 188
T P P P + L P S + S+PSP D +
Sbjct: 2759 RPPTTAGPPAPAPP----------AAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPP 2808
Query: 189 TPSLPSPTDRSTAETPSLPNPTDLSTAETPSLPNPPDRSTAETL 232
L A +P+ P P S T P P + L
Sbjct: 2809 AAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPL 2852
Score = 33.4 bits (76), Expect = 0.12
Identities = 37/205 (18%), Positives = 51/205 (24%), Gaps = 17/205 (8%)
Query: 31 PSPTDRSTADTPSVPSPTDLSTVVTPSLPNPTDLNIAKTPSVP-SPTDRSTAETPSLPNP 89
P+P A + P P + S P P+ P +P + P
Sbjct: 2706 PTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAG 2765
Query: 90 TDLSTVVTPSLPNPTDLSTVETPNLPDRSTAETPSLPNPTDRSTVVTPSLPNPTDRSTVE 149
P T S PS +P D V ++
Sbjct: 2766 PPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPA 2825
Query: 150 TPNLPDRSTAETPSLPNPTDLSTVET---------PSVPSPTDRSTAETPSLPSPTDRST 200
P P S T P P P RS A P+ P+
Sbjct: 2826 GPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPARPPVRR 2885
Query: 201 AETPSLPNPTDLSTAETPSLPNPPD 225
P++ T+ S PPD
Sbjct: 2886 LARPAVSRSTE-------SFALPPD 2903
Score = 32.6 bits (74), Expect = 0.19
Identities = 37/209 (17%), Positives = 62/209 (29%), Gaps = 18/209 (8%)
Query: 5 LPNPTDLSTVETLSLPNPLDRNTTETPSPTD-RSTADTPSVPSPTDLSTVVTPSLPNPTD 63
LP+P D + L +P+ T+ P+ P P P
Sbjct: 2798 LPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPP------PGPPPPSLP 2851
Query: 64 LNIAKTPSVP---SPTDRSTAETPSLPNPTDLSTVVTPSLPNPTDLSTVETPNLPDRSTA 120
L + P P RS A P+ P + + P++ T+ +
Sbjct: 2852 LGGSVAPGGDVRRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQP 2911
Query: 121 ETPSLPNPTDRSTVVTPSLPNPTDRSTVETPNLPDRSTA----ETPSLPNPTDLSTV--- 173
+ P P P + P P + P P A + ++P P + V
Sbjct: 2912 QAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVPGR 2971
Query: 174 -ETPSVPSPTDRSTAETPSLPSPTDRSTA 201
P P + E P+ +P +
Sbjct: 2972 VAVPRFRVPQPAPSREAPASSTPPLTGHS 3000
Score = 31.4 bits (71), Expect = 0.53
Identities = 39/221 (17%), Positives = 61/221 (27%), Gaps = 21/221 (9%)
Query: 33 PTDRSTADTPSVPSPTDLSTVVTPSLPNPTDLNIAKTPSVPSPTDRSTAETPSLPNPTDL 92
P RS A P+ P+ + + P++ T+ + A P P + A P P P
Sbjct: 2866 PPSRSPAAKPAAPARPPVRRLARPAVSRSTE-SFALPPDQPERPPQPQAPPPPQPQPQPP 2924
Query: 93 STVVTPSLPNPTDLSTVETPNLPDRSTAETPSLPNPTDRSTVVTPS--------LPNPTD 144
P P D + A PS P + P +P P
Sbjct: 2925 PPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVPGRVAVPRFRVPQPAP 2984
Query: 145 RSTVETPNLPDRSTAETPSL------------PNPTDLSTVETPSVPSPTDRSTAETPSL 192
+ P + + +P +S +T P T+ S A++
Sbjct: 2985 SREAPASSTPPLTGHSLSRVSSWASSLALHEETDPPPVSLKQTLWPPDDTEDSDADSLFD 3044
Query: 193 PSPTDRSTAETPSLPNPTDLSTAETPSLPNPPDRSTAETLS 233
LP A P P + S
Sbjct: 3045 SDSERSDLEALDPLPPEPHDPFAHEPDPATPEAGARESPSS 3085
>gnl|CDD|236776 PRK10856, PRK10856, cytoskeletal protein RodZ; Provisional.
Length = 331
Score = 36.5 bits (85), Expect = 0.008
Identities = 27/91 (29%), Positives = 36/91 (39%), Gaps = 6/91 (6%)
Query: 22 PLDRNTTETPSPTDRSTADTPSVPSPTDLSTVVTPSLPNPTDLNIAKTPSVPSPTDRSTA 81
PLD +TT P+ T A + P+ + V T P A PS + TA
Sbjct: 163 PLDTSTTTDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVA--PSQANVDTA 220
Query: 82 ETPSLPNPTDLSTVVTPSLPNPTDLSTVETP 112
TP+ P + P PTD + V TP
Sbjct: 221 ATPAPAAPATPDG----AAPLPTDQAGVSTP 247
Score = 31.2 bits (71), Expect = 0.39
Identities = 19/74 (25%), Positives = 25/74 (33%), Gaps = 2/74 (2%)
Query: 142 PTDRSTVETPNLPDRSTAETPSLPNPTDLSTVETPSVPSPTDRSTAETPSLPSPTDRSTA 201
P D ST P + A PT+ T + P+P PS + TA
Sbjct: 163 PLDTSTTTDPA-TTPAPAAPVD-TTPTNSQTPAVATAPAPAVDPQQNAVVAPSQANVDTA 220
Query: 202 ETPSLPNPTDLSTA 215
TP+ P A
Sbjct: 221 ATPAPAAPATPDGA 234
Score = 30.0 bits (68), Expect = 0.94
Identities = 15/89 (16%), Positives = 25/89 (28%)
Query: 40 DTPSVPSPTDLSTVVTPSLPNPTDLNIAKTPSVPSPTDRSTAETPSLPNPTDLSTVVTPS 99
DT + P P PT+ + P+P P+ ++ T TP+
Sbjct: 165 DTSTTTDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVAPSQANVDTAATPA 224
Query: 100 LPNPTDLSTVETPNLPDRSTAETPSLPNP 128
P + + PN
Sbjct: 225 PAAPATPDGAAPLPTDQAGVSTPAADPNA 253
Score = 30.0 bits (68), Expect = 1.0
Identities = 16/73 (21%), Positives = 27/73 (36%)
Query: 160 ETPSLPNPTDLSTVETPSVPSPTDRSTAETPSLPSPTDRSTAETPSLPNPTDLSTAETPS 219
+T + +P P +PT+ T + P+P P+ ++ TA TP+
Sbjct: 165 DTSTTTDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVAPSQANVDTAATPA 224
Query: 220 LPNPPDRSTAETL 232
P A L
Sbjct: 225 PAAPATPDGAAPL 237
Score = 29.6 bits (67), Expect = 1.4
Identities = 20/89 (22%), Positives = 32/89 (35%), Gaps = 1/89 (1%)
Query: 102 NPTDLSTVETPNLPDRSTAETPSLPNPTDRSTVVTPSLPNPTDRSTVETPNLPDRSTAET 161
L T T + P PT+ T + P P P ++ +T
Sbjct: 160 QSVPLDTSTTTDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVAPSQANVDT 219
Query: 162 PSLPNPTDLSTVETPSVPSPTDRSTAETP 190
+ P P +T + + P PTD++ TP
Sbjct: 220 AATPAPAAPATPDGAA-PLPTDQAGVSTP 247
Score = 29.2 bits (66), Expect = 1.9
Identities = 20/83 (24%), Positives = 31/83 (37%), Gaps = 1/83 (1%)
Query: 55 TPSLPNPTDLNIAKTPSVPSPTDRSTAETPSLPNPTDLSTVVTPSLPNPTDLSTVETPNL 114
T + +P P +PT+ T + P P P+ ++ T TP
Sbjct: 166 TSTTTDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVAPSQANVDTAATPA- 224
Query: 115 PDRSTAETPSLPNPTDRSTVVTP 137
P + P PTD++ V TP
Sbjct: 225 PAAPATPDGAAPLPTDQAGVSTP 247
Score = 28.8 bits (65), Expect = 2.6
Identities = 22/90 (24%), Positives = 35/90 (38%), Gaps = 7/90 (7%)
Query: 9 TDLSTVETLSLPNPLDRNTTETPSPTDRSTADTPSVPSPTDLSTVVTPSLPNPTDLNIAK 68
+T + + P P T + + A P+ + VV PS N
Sbjct: 165 DTSTTTDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVAPSQAN------VD 218
Query: 69 TPSVPSPTDRSTAETPSLPNPTDLSTVVTP 98
T + P+P +T + + P PTD + V TP
Sbjct: 219 TAATPAPAAPATPDGAA-PLPTDQAGVSTP 247
Score = 28.1 bits (63), Expect = 4.2
Identities = 19/83 (22%), Positives = 29/83 (34%), Gaps = 1/83 (1%)
Query: 69 TPSVPSPTDRSTAETPSLPNPTDLSTVVTPSLPNPTDLSTVETPNLPDRSTAETPSLPNP 128
T + P P PT+ T + P P P ++ +T + P P
Sbjct: 166 TSTTTDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVAPSQANVDTAATPAP 225
Query: 129 TDRSTVVTPSLPNPTDRSTVETP 151
+ P PTD++ V TP
Sbjct: 226 A-APATPDGAAPLPTDQAGVSTP 247
Score = 28.1 bits (63), Expect = 4.7
Identities = 21/89 (23%), Positives = 31/89 (34%), Gaps = 4/89 (4%)
Query: 90 TDLSTVVTPSLPNPTDLSTVETPNLPDRSTAETPSLPNPTDRSTVVTPSLPNPTDRSTVE 149
+T + P P N + A P+ ++ VV PS + T
Sbjct: 165 DTSTTTDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVAPS---QANVDTAA 221
Query: 150 TPNLPDRSTAETPSLPNPTDLSTVETPSV 178
TP P + P PTD + V TP+
Sbjct: 222 TPA-PAAPATPDGAAPLPTDQAGVSTPAA 249
>gnl|CDD|218439 pfam05109, Herpes_BLLF1, Herpes virus major outer envelope
glycoprotein (BLLF1). This family consists of the BLLF1
viral late glycoprotein, also termed gp350/220. It is
the most abundantly expressed glycoprotein in the viral
envelope of the Herpesviruses and is the major antigen
responsible for stimulating the production of
neutralising antibodies in vivo.
Length = 830
Score = 34.4 bits (78), Expect = 0.055
Identities = 46/195 (23%), Positives = 68/195 (34%), Gaps = 6/195 (3%)
Query: 41 TPSVPSPTDLSTVVT--PSLPNPTDLNIAKTPSVPSPTDRSTAETPSLPNPTDLSTVVTP 98
TPS+P + TV T P+ PT + P SPT R+T+ TP+ +PT T
Sbjct: 452 TPSLPPASTGPTVSTADPTSGTPTGTTSSTLPEDTSPTSRTTSATPNATSPTPAVTTPNA 511
Query: 99 SLPNPTDLSTVETPNLPDRSTAETPSLPNPTDRSTVVTPSLPNPTDRSTVETPNLPDRST 158
+ P S P + T P+ +P N
Sbjct: 512 TSPTTQKTSDTPNATSPTPIVIGVTTTATSPPTGTTSVPNATSPQVTEESPVNNTNTPVV 571
Query: 159 AETPSLPNPTDLSTVETPSVPSPTDRSTAETPSLPSPTDRSTAETPSL----PNPTDLST 214
PS+ + + + + S +P ST+ TP L P + T
Sbjct: 572 TSAPSVLTSAVTTGQHGTGSSPTSQQPGIPSSSHSTPRSNSTSTTPLLTSAHPTGGENIT 631
Query: 215 AETPSLPNPPDRSTA 229
ETPS+P+ ST
Sbjct: 632 EETPSVPSTTHVSTL 646
>gnl|CDD|217835 pfam03999, MAP65_ASE1, Microtubule associated protein (MAP65/ASE1
family).
Length = 619
Score = 33.7 bits (77), Expect = 0.088
Identities = 31/171 (18%), Positives = 44/171 (25%), Gaps = 17/171 (9%)
Query: 68 KTPSVPSPTDRSTAETPSLPNPTDLSTVVTPSLPNPTDLSTVETPNLPDRSTAETPSLPN 127
K + S + P+ ST S TPNL S ++ SL +
Sbjct: 448 KLANKTSTVMEPPYGSTESSVPSTPSTRRNDRNITSNTPSLKRTPNLTKSSLSQEASLIS 507
Query: 128 PTDRSTVVTP------SLPNPTDRSTVETPNLP-------DRSTAETPSLPNPTDLSTVE 174
+ +T +LP S NL S +P N
Sbjct: 508 KSTGNTHKHSTPRRLTTLPKLPAASRSSKGNLIRSGANGNASSDLSSPGSINSKSPEHSV 567
Query: 175 TPSVPSPTDRSTAETPSLPSPTDRSTAETPSLPN----PTDLSTAETPSLP 221
+ T S + + L P S A TP L
Sbjct: 568 PLVRVFDIHLRASTTKGRHSTPSTNEKKKRLLKRSPLSPPKESVATTPRLN 618
Score = 29.4 bits (66), Expect = 1.9
Identities = 22/124 (17%), Positives = 39/124 (31%), Gaps = 13/124 (10%)
Query: 110 ETPNLPDRSTAETPSLPNPTDRSTVVTPSLPNPTDRSTVETPNLPDRSTAETPSLPNPTD 169
+ + PS P+ +T + P S TPNL S ++ SL + +
Sbjct: 456 VMEPPYGSTESSVPSTPSTRRNDRNITSNTP-----SLKRTPNLTKSSLSQEASLISKST 510
Query: 170 LSTVETPSV------PSPTDRSTAETPSLPSPTDRSTAETPSLPNPTDLSTAETPSLPNP 223
+T + + P S + +L A + + S +P P
Sbjct: 511 GNTHKHSTPRRLTTLPKLPAASRSSKGNLIRSGANGNASSDLSSPGSINSK--SPEHSVP 568
Query: 224 PDRS 227
R
Sbjct: 569 LVRV 572
>gnl|CDD|237284 PRK13108, PRK13108, prolipoprotein diacylglyceryl transferase;
Reviewed.
Length = 460
Score = 31.9 bits (72), Expect = 0.25
Identities = 21/150 (14%), Positives = 39/150 (26%), Gaps = 6/150 (4%)
Query: 81 AETPSLPNPTDLSTVVTPSLPNPTDLSTVETPNLPDRSTAETPSLPNPTDRSTVVTPSLP 140
+ P +L+ S + PN PD + + + V
Sbjct: 292 VDEALEREPAELAAAAVASAASAVGPVGPGEPNQPDDVAEAVKA--EVAEVTDEVAAESV 349
Query: 141 NPTDRSTVETPNLPDRSTAETPSLPNPTDLSTVETPSVPSPTDRSTAETPSLPSPTDRST 200
E+ + ++ P DL+ + P+ + + P P+
Sbjct: 350 VQVADRDGESTPAVEETSEADIEREQPGDLAG-QAPAAHQVDAEAASAAPEEPAALA--- 405
Query: 201 AETPSLPNPTDLSTAETPSLPNPPDRSTAE 230
+E P A P PD
Sbjct: 406 SEAHDETEPEVPEKAAPIPDPAKPDELAVA 435
>gnl|CDD|227709 COG5422, ROM1, RhoGEF, Guanine nucleotide exchange factor for
Rho/Rac/Cdc42-like GTPases [Signal transduction
mechanisms].
Length = 1175
Score = 31.8 bits (72), Expect = 0.40
Identities = 39/188 (20%), Positives = 59/188 (31%), Gaps = 14/188 (7%)
Query: 36 RSTADTPSVP-SPTDLSTVVTP-SLPNPTDLNIAKTPSVPSPTD-----RSTAETPSLPN 88
+S A P L + P S+ N D +I + S S + + S P
Sbjct: 22 KSDAFVSKQLLPPRRLQRKLNPISIRNGADNDIINSESKESFGKYALGHQIFSSFSSSPK 81
Query: 89 PTDLSTVVTPSLPNPTDLSTVETPNLPDRSTAETPSLPNPTDRSTVVTPSLPNPTDRSTV 148
P +P+ S+ + N D S + S+ + P D S V
Sbjct: 82 LFQRRNSAGPITHSPSATSSTSSLNSNDGDQFSPASDSLSFNPSSTQSRKDSGPGDGSPV 141
Query: 149 ETPNLPDRSTAETPSLPNPTDLSTVETPSVPSPTDRSTAETPS-------LPSPTDRSTA 201
+ P ++ T P + +P RS E PS LPSP R
Sbjct: 142 QKRKNPLLPSSSTHGTHPPIVFTDNNGSHAGAPNARSRKEIPSLGSQSMQLPSPHFRQKF 201
Query: 202 ETPSLPNP 209
+ N
Sbjct: 202 SSSDTSNG 209
Score = 27.9 bits (62), Expect = 6.3
Identities = 19/66 (28%), Positives = 23/66 (34%), Gaps = 3/66 (4%)
Query: 21 NPLDRNTTETPSPTDRSTADTPSVPSPTDLSTVVTPSLPNPTDLNIAKTPSVPSPTDRST 80
NP + + P D S P ST T TD N + +P RS
Sbjct: 123 NPSSTQSRKDSGPGDGSPVQKRKNPLLPSSSTHGTHPPIVFTDNNGS---HAGAPNARSR 179
Query: 81 AETPSL 86
E PSL
Sbjct: 180 KEIPSL 185
>gnl|CDD|215637 PLN03223, PLN03223, Polycystin cation channel protein; Provisional.
Length = 1634
Score = 31.5 bits (71), Expect = 0.46
Identities = 34/137 (24%), Positives = 51/137 (37%), Gaps = 30/137 (21%)
Query: 39 ADTPSVPSPTDLSTVVTPSLPNPTDLNIAKTPSVPSPTDRSTAETPSLPNPTDLSTVV-- 96
A T + D T L +P A TP P P + T + D+ V
Sbjct: 555 ASTVYLLPLRDRITARRNELQDP----QASTPIFPYPA--PSNFTFTNITAGDVKYVAAL 608
Query: 97 --TPSLPNPTDLSTVE--------------TPNLPDRSTA---ETPSLPNPTDRST---V 134
L PTDLS VE +L DR+ + ++ N + +T +
Sbjct: 609 APGYDLTAPTDLSLVEYNPVVLLRNDYAFMRCDLEDRAPEYAGQCVAMNNTCEATTAGAI 668
Query: 135 VTPSLPNPTDRSTVETP 151
+TP + NP +R+ E P
Sbjct: 669 ITPVVANPENRTACEEP 685
>gnl|CDD|221473 pfam12230, PRP21_like_P, Pre-mRNA splicing factor PRP21 like
protein. This domain family is found in eukaryotes, and
is typically between 212 and 238 amino acids in length.
The family is found in association with pfam01805. There
are two completely conserved residues (W and H) that may
be functionally important. PRP21 is required for
assembly of the prespliceosome and it interacts with U2
snRNP and/or pre-mRNA in the prespliceosome. This family
also contains proteins similar to PRP21, such as the
mammalian SF3a. SF3a also interacts with U2 snRNP from
the prespliceosome, converting it to its active form.
Length = 230
Score = 30.9 bits (70), Expect = 0.47
Identities = 15/83 (18%), Positives = 20/83 (24%), Gaps = 3/83 (3%)
Query: 104 TDLSTVETPNLPDRSTAETPSLPNPTDRSTVVTPSLPNPTDRSTVETPNLPDRSTAETPS 163
D VET D E LP P + ++ SL + E
Sbjct: 57 QDFVVVETIEFNDIDVLE---LPPPLTLNELIYRSLEQKSKALEEPDAAAAPEEEEEMEE 113
Query: 164 LPNPTDLSTVETPSVPSPTDRST 186
D E + S
Sbjct: 114 EEEDIDEEKKEESAKKSTPPIKE 136
Score = 28.9 bits (65), Expect = 2.0
Identities = 10/66 (15%), Positives = 16/66 (24%)
Query: 100 LPNPTDLSTVETPNLPDRSTAETPSLPNPTDRSTVVTPSLPNPTDRSTVETPNLPDRSTA 159
LP P L+ + +L +S A D E
Sbjct: 75 LPPPLTLNELIYRSLEQKSKALEEPDAAAAPEEEEEMEEEEEDIDEEKKEESAKKSTPPI 134
Query: 160 ETPSLP 165
+ +P
Sbjct: 135 KEMKIP 140
Score = 27.0 bits (60), Expect = 8.8
Identities = 10/62 (16%), Positives = 15/62 (24%)
Query: 139 LPNPTDRSTVETPNLPDRSTAETPSLPNPTDLSTVETPSVPSPTDRSTAETPSLPSPTDR 198
LP P + + +L +S A E D E + S
Sbjct: 75 LPPPLTLNELIYRSLEQKSKALEEPDAAAAPEEEEEMEEEEEDIDEEKKEESAKKSTPPI 134
Query: 199 ST 200
Sbjct: 135 KE 136
>gnl|CDD|221179 pfam11711, Tim54, Inner membrane protein import complex subunit
Tim54. Mitochondrial function depends on the import of
hundreds of different proteins synthesised in the
cytosol. Protein import is a multi-step pathway which
includes the binding of precursor proteins to surface
receptors, translocation of the precursor across one or
both mitochondrial membranes, and folding and assembly
of the imported protein inside the mitochondrion. Most
precursor proteins carry amino-terminal targeting
signals, called pre-sequences, and are imported into
mitochondria via import complexes located in both the
outer and the inner membrane (IM). The IM complex, TIM,
is made up of at least two proteins which mediate
translocation of proteins into the matrix by removing
their signal peptide and another pair of proteins, Tim54
and Tim22, that insert the polytopic proteins, that
carry internal targetting information, into the inner
membrane.
Length = 377
Score = 31.2 bits (71), Expect = 0.47
Identities = 25/90 (27%), Positives = 31/90 (34%), Gaps = 2/90 (2%)
Query: 121 ETPSLPNPT-DRSTVVTPSLPNPTDRSTVETPNLPDRSTAETPSLPNPTDLSTVETPSVP 179
+ P P PT D + T P S E +T E + + P VP
Sbjct: 196 DPPEPPEPTVDEAAPETEVEATPAAESPAEPAEETAETTPEETEDAPEEENNKPVKPPVP 255
Query: 180 SPTDRSTAETPSLPSPTDRSTAETPSLPNP 209
P S E PS P P + PSL P
Sbjct: 256 KPYI-SPDEYPSAPLPPELPQLLQPSLVIP 284
Score = 29.3 bits (66), Expect = 1.8
Identities = 25/88 (28%), Positives = 33/88 (37%), Gaps = 2/88 (2%)
Query: 137 PSLPNPTDRSTVETPNLPDRSTAETPSLP-NPTDLSTVETPSVPSPTDRSTAETPSLPSP 195
P P PT + AE+P+ P T +T E + + P +P P
Sbjct: 198 PEPPEPTVDEAAPETEVEATPAAESPAEPAEETAETTPEETEDAPEEENNKPVKPPVPKP 257
Query: 196 TDRSTAETPSLPNPTDLSTAETPSLPNP 223
S E PS P P +L PSL P
Sbjct: 258 YI-SPDEYPSAPLPPELPQLLQPSLVIP 284
Score = 28.6 bits (64), Expect = 2.9
Identities = 20/93 (21%), Positives = 30/93 (32%), Gaps = 3/93 (3%)
Query: 92 LSTVVTPSLPNPTDLSTVETPNLPDRSTAETPSLP---NPTDRSTVVTPSLPNPTDRSTV 148
L + P P PT + AE+P+ P + ++
Sbjct: 192 LGPLDPPEPPEPTVDEAAPETEVEATPAAESPAEPAEETAETTPEETEDAPEEENNKPVK 251
Query: 149 ETPNLPDRSTAETPSLPNPTDLSTVETPSVPSP 181
P S E PS P P +L + PS+ P
Sbjct: 252 PPVPKPYISPDEYPSAPLPPELPQLLQPSLVIP 284
>gnl|CDD|220365 pfam09726, Macoilin, Transmembrane protein. This entry is a highly
conserved protein present in eukaryotes.
Length = 680
Score = 30.7 bits (69), Expect = 0.73
Identities = 28/200 (14%), Positives = 51/200 (25%), Gaps = 15/200 (7%)
Query: 22 PLDRNTTETPSPTDRSTADTPSVPSPTDLSTVVTPSLPNPTDLNIAKTPSVPSPTDRSTA 81
D+ +E S ST VP N + +
Sbjct: 211 VTDKEKSEASSKGLTST--KELVPVQNSGGNHSLSKSSNSQTPELEYSEKGKDHHHSHNH 268
Query: 82 ETPSLPNPTDLSTVVTPSLPNPTDLSTVETPNLPDRSTAETPSLPNPTDRSTVVTPSLPN 141
+ S+ S L + + S PS + T+ S T + +
Sbjct: 269 QHHSIGINNHHSKHADSKLQ--------TIEVIENHSNKSRPS-SSSTNGSKETTSNSSS 319
Query: 142 PTDRSTVETPNLPDRSTAETPSLPNPTDLSTVETPSVPSPT---DRSTAETPSLPSPTDR 198
S + + + + + SVPS + + S + S S R
Sbjct: 320 AAAGSI-GSKSSKSAKHSNRNKSNSSPKSHSSANGSVPSSSVSDNESKQKRASKSSSGAR 378
Query: 199 STAETPSLPNPTDLSTAETP 218
+ + S + P
Sbjct: 379 DSKKDASGMSANGTVENCIP 398
>gnl|CDD|218115 pfam04502, DUF572, Family of unknown function (DUF572). Family of
eukaryotic proteins with undetermined function.
Length = 321
Score = 30.1 bits (68), Expect = 0.83
Identities = 16/95 (16%), Positives = 26/95 (27%), Gaps = 3/95 (3%)
Query: 144 DRSTVETPNLPDRSTAETPSLPNPTDLSTVETPSVPSPTDRSTAETPSLPSPTDRSTAET 203
E + + + S PT + S A+ S P R +
Sbjct: 216 SEDDEEDNDNTPSPKSGSSSPAKPTSILKKSAAKRSEAPSSSKAKKNSRGIPKPRDALSS 275
Query: 204 PSLPN---PTDLSTAETPSLPNPPDRSTAETLSLQ 235
+ P S + + + P TA SL
Sbjct: 276 LVVRKKAAPESTSQSPSSAEPTSESPQTAGNSSLS 310
>gnl|CDD|178748 PLN03209, PLN03209, translocon at the inner envelope of chloroplast
subunit 62; Provisional.
Length = 576
Score = 30.7 bits (69), Expect = 0.85
Identities = 39/203 (19%), Positives = 57/203 (28%), Gaps = 3/203 (1%)
Query: 31 PSPTDRSTADTPSVPS---PTDLSTVVTPSLPNPTDLNIAKTPSVPSPTDRSTAETPSLP 87
P PT T + PS P P VV L T K P+ P PT S++ S
Sbjct: 341 PVPTKPVTPEAPSPPIEEEPPQPKAVVPRPLSPYTAYEDLKPPTSPIPTPPSSSPASSKS 400
Query: 88 NPTDLSTVVTPSLPNPTDLSTVETPNLPDRSTAETPSLPNPTDRSTVVTPSLPNPTDRST 147
+P+P S V +T L + P+ P+PT +
Sbjct: 401 VDAVAKPAEPDVVPSPGSASNVPEVEPAQVEAKKTRPLSPYARYEDLKPPTSPSPTAPTG 460
Query: 148 VETPNLPDRSTAETPSLPNPTDLSTVETPSVPSPTDRSTAETPSLPSPTDRSTAETPSLP 207
V S P T + P + S P + P
Sbjct: 461 VSPSVSSTSSVPAVPDTAPATAATDAAAPPPANMRPLSPYAVYDDLKPPTSPSPAAPVGK 520
Query: 208 NPTDLSTAETPSLPNPPDRSTAE 230
+ + P + A+
Sbjct: 521 VAPSSTNEVVKVGNSAPPTALAD 543
>gnl|CDD|237863 PRK14949, PRK14949, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 944
Score = 30.1 bits (68), Expect = 1.1
Identities = 21/161 (13%), Positives = 42/161 (26%), Gaps = 10/161 (6%)
Query: 55 TPSLPNPTDLNIAKTPSVPSPTDRSTAETPSLPNPTDLSTVVTPSLPNPTDLSTVETPNL 114
TP P S + ++ + +V +L + + + P+
Sbjct: 647 TPPSRAPPASLSKPASSPDASQTSASFDLDPDFELATHQSVPEAALASGSAPAPPPVPDP 706
Query: 115 PDRSTAETPSLPNPTDRSTVVTPSLPNPTDRSTVETPNLPDRSTAETPSLPNPTDLSTVE 174
DR E PN + ++ T V+
Sbjct: 707 YDRPPWEEAPEVAS-------ANDGPNNAAEGNLSESVEDASNSELQAVEQQATHQPQVQ 759
Query: 175 TPSVPSPTDRSTAETPSLPSPTDRSTAETPSLP---NPTDL 212
+ + + +T S T+ + S +P DL
Sbjct: 760 AEAQSPASTTALTQTSSEVQDTELNLVLLSSGSITGHPLDL 800
>gnl|CDD|165527 PHA03269, PHA03269, envelope glycoprotein C; Provisional.
Length = 566
Score = 30.1 bits (67), Expect = 1.2
Identities = 22/113 (19%), Positives = 35/113 (30%), Gaps = 3/113 (2%)
Query: 114 LPDRSTAETPSLPNPTDRSTVVTPSLPNPTDRSTVETPNLPDRSTAETPSL---PNPTDL 170
+P+ T+ P+P P+P T PD + A TP+ +P
Sbjct: 28 IPELHTSAATQKPDPAPAPHQAASRAPDPAVAPTSAASRKPDLAQAPTPAASEKFDPAPA 87
Query: 171 STVETPSVPSPTDRSTAETPSLPSPTDRSTAETPSLPNPTDLSTAETPSLPNP 223
P P P + T+ + P D T+ P+P
Sbjct: 88 PHQAASRAPDPAVAPQLAAAPKPDAAEAFTSAAQAHEAPADAGTSAASKKPDP 140
Score = 28.9 bits (64), Expect = 2.6
Identities = 28/137 (20%), Positives = 41/137 (29%), Gaps = 4/137 (2%)
Query: 63 DLNIAKTPSVPSPTDRSTAETPSLPNPTDLSTVVTPSLPNPTDLSTVETPNLPDRSTAET 122
+L IA + + T+ P+P P+P T PD + A T
Sbjct: 16 NLIIANLNTNIPIPELHTSAATQKPDPAPAPHQAASRAPDPAVAPTSAASRKPDLAQAPT 75
Query: 123 PSL---PNPTDRSTVVTPSLPNPTDRSTVETPNLPDRSTAETPSLPNPTDLSTVETPSVP 179
P+ +P P+P + PD + A T S + S
Sbjct: 76 PAASEKFDPAPAPHQAASRAPDPAVAPQLAAAPKPDAAEAFT-SAAQAHEAPADAGTSAA 134
Query: 180 SPTDRSTAETPSLPSPT 196
S A T P P
Sbjct: 135 SKKPDPAAHTQHSPPPF 151
Score = 27.4 bits (60), Expect = 7.6
Identities = 20/115 (17%), Positives = 32/115 (27%), Gaps = 3/115 (2%)
Query: 118 STAETPSLPNPTDRSTVVTPSLPNPTDRSTVETPNLPDRSTAETPSLPNPTDLSTVETPS 177
A + + T P+P PD + A T + DL+ TP+
Sbjct: 18 IIANLNTNIPIPELHTSAATQKPDPAPAPHQAASRAPDPAVAPTSAASRKPDLAQAPTPA 77
Query: 178 V---PSPTDRSTAETPSLPSPTDRSTAETPSLPNPTDLSTAETPSLPNPPDRSTA 229
P P P P+ + T+ + P D T+
Sbjct: 78 ASEKFDPAPAPHQAASRAPDPAVAPQLAAAPKPDAAEAFTSAAQAHEAPADAGTS 132
>gnl|CDD|100008 cd06151, YjgF_YER057c_UK114_like_3, This group of proteins belong
to a large family of YjgF/YER057c/UK114-like proteins
present in bacteria, archaea, and eukaryotes with no
definitive function. The conserved domain is similar in
structure to chorismate mutase but there is no sequence
similarity and no functional connection. Members of this
family have been implicated in isoleucine (Yeo7, Ibm1,
aldR) and purine (YjgF) biosynthesis, as well as
threonine anaerobic degradation (tdcF) and mitochondrial
DNA maintenance (Ibm1). This domain homotrimerizes
forming a distinct intersubunit cavity that may serve as
a small molecule binding site.
Length = 126
Score = 28.8 bits (65), Expect = 1.3
Identities = 13/30 (43%), Positives = 15/30 (50%)
Query: 146 STVETPNLPDRSTAETPSLPNPTDLSTVET 175
T E PN P RST + L NP L +E
Sbjct: 95 GTAEQPNKPARSTLQVAGLVNPGWLVEIEV 124
Score = 28.1 bits (63), Expect = 2.0
Identities = 11/22 (50%), Positives = 12/22 (54%)
Query: 107 STVETPNLPDRSTAETPSLPNP 128
T E PN P RST + L NP
Sbjct: 95 GTAEQPNKPARSTLQVAGLVNP 116
>gnl|CDD|165021 PHA02638, PHA02638, CC chemokine receptor-like protein;
Provisional.
Length = 417
Score = 29.6 bits (66), Expect = 1.4
Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 5/68 (7%)
Query: 129 TDRSTVVTPSLPNPTDRSTVETPNLPDRSTAETPSLPNPTDLSTVETPSVPSPTDRSTAE 188
T S +++ S +PT T+ET D S + + T++ E P+ SP+ S +
Sbjct: 7 TLSSIILSSSTLSPTTFFTIETSM--DESKSIISTF---TEIIPTEIPTSESPSPNSNSS 61
Query: 189 TPSLPSPT 196
+ S S +
Sbjct: 62 SSSSSSSS 69
Score = 27.7 bits (61), Expect = 5.9
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Query: 171 STVETPSVPSPTDRSTAETPSLPSPTDRSTAETPSLPNPTDLSTAETPSLPNPPDRSTAE 230
S + + S SPT T ET S + ST PT++ T+E+PS PN S++
Sbjct: 10 SIILSSSTLSPTTFFTIETSMDESKSIISTFTEII---PTEIPTSESPS-PNSNSSSSSS 65
Query: 231 TLS 233
+ S
Sbjct: 66 SSS 68
Score = 27.3 bits (60), Expect = 7.7
Identities = 22/77 (28%), Positives = 33/77 (42%), Gaps = 4/77 (5%)
Query: 29 ETPSPTDRSTADTPSVPSPTDLSTVVTPSLPNPTDLNIAKTPSVPSPTDRSTAETPSLPN 88
+ S T S + S SPT T+ T + + I T + PT+ T+E+PS PN
Sbjct: 2 DNSSTTLSSIILSSSTLSPTTFFTIETSMDESKS---IISTFTEIIPTEIPTSESPS-PN 57
Query: 89 PTDLSTVVTPSLPNPTD 105
S+ + S D
Sbjct: 58 SNSSSSSSSSSSSITYD 74
>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 620
Score = 29.9 bits (68), Expect = 1.4
Identities = 15/83 (18%), Positives = 22/83 (26%)
Query: 125 LPNPTDRSTVVTPSLPNPTDRSTVETPNLPDRSTAETPSLPNPTDLSTVETPSVPSPTDR 184
LP+ + NPT P P + +A T S P P
Sbjct: 360 LPSAFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPA 419
Query: 185 STAETPSLPSPTDRSTAETPSLP 207
E P + + +L
Sbjct: 420 EPTEPSPTPPANAANAPPSLNLE 442
Score = 29.5 bits (67), Expect = 1.5
Identities = 17/83 (20%), Positives = 24/83 (28%), Gaps = 1/83 (1%)
Query: 122 TPSLPNPTDRSTVVTPSLPNPTDRSTVETPNLPDRSTAETPSLPNPTDLSTVETPSVPSP 181
+ S N S P P + P P P T S+ +P+
Sbjct: 514 SGSASNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPAD 573
Query: 182 TDRSTAETPS-LPSPTDRSTAET 203
+ PSPT S+ E
Sbjct: 574 SSPPPPIPEEPTPSPTKDSSPEE 596
Score = 28.8 bits (65), Expect = 2.9
Identities = 23/86 (26%), Positives = 37/86 (43%), Gaps = 2/86 (2%)
Query: 149 ETPNLPDRSTAETPSLPNPTDLSTVETPSVPSPTDRSTAETPSLPSPTDRSTAETPSLPN 208
E+ + +TA+TP P + TP +P PT + TP P PT +T + + P
Sbjct: 511 ESQSGSASNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPT--ATQASSNAPA 568
Query: 209 PTDLSTAETPSLPNPPDRSTAETLSL 234
++ P +P P S + S
Sbjct: 569 QIPADSSPPPPIPEEPTPSPTKDSSP 594
Score = 27.6 bits (62), Expect = 7.6
Identities = 14/82 (17%), Positives = 21/82 (25%), Gaps = 2/82 (2%)
Query: 139 LPNPTDRSTVETPNLPDRSTAETPSLPNPTDLSTVETPSVPSPTDRSTAETPSLPSPTDR 198
LP+ + + A PS P + + T + P
Sbjct: 360 LPSAFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATT--PSPPPAKASPPIPV 417
Query: 199 STAETPSLPNPTDLSTAETPSL 220
T P P + PSL
Sbjct: 418 PAEPTEPSPTPPANAANAPPSL 439
>gnl|CDD|219916 pfam08580, KAR9, Yeast cortical protein KAR9. The KAR9 protein in
Saccharomyces cerevisiae is a cytoskeletal protein
required for karyogamy, correct positioning of the
mitotic spindle and for orientation of cytoplasmic
microtubules. KAR9 localises at the shmoo tip in mating
cells and at the tip of the growing bud in anaphase.
Length = 626
Score = 29.1 bits (65), Expect = 2.4
Identities = 28/194 (14%), Positives = 48/194 (24%), Gaps = 14/194 (7%)
Query: 11 LSTVETLSLPNPLDRNTTETPSPTDRSTADTPSVPSPTDLSTVVTPSLPNPTDLNIAKTP 70
L+++ N +ET + D P + + N L ++ P
Sbjct: 447 LASIPDEKPSNISVFEDSETSPNSSTLLRDPPPKKCGEESGHLPNNPFFNKLKLTLSSIP 506
Query: 71 SVPSPTDRSTAETPSLPNPTDLSTVVTPSLPNPTDLSTVETPNLPDRSTAETPSLPNPTD 130
+ T TPS P + ++ L + + P S
Sbjct: 507 PLSPRQSIITLPTPSRPASR--ISSLSLRLGSYSGSIVSPPPYPTLVSRKGAAG------ 558
Query: 131 RSTVVTPSLPNPTDRSTVETPNLPDRSTAETPSLPNPTDLSTVETPSVPSPTDRSTAETP 190
S E + P+LP + +T S P+ P
Sbjct: 559 ------LSFNRSVSDIEGERIGRYNLLPTRIPALPFKAESTTSSRRSSSLPSPTGVIGFP 612
Query: 191 SLPSPTDRSTAETP 204
D P
Sbjct: 613 GSVPRFDHENLLPP 626
>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional.
Length = 1352
Score = 28.6 bits (64), Expect = 3.5
Identities = 32/232 (13%), Positives = 55/232 (23%), Gaps = 7/232 (3%)
Query: 5 LPNPTDLSTVETLSLPNPLDRNTTETPSPTDRSTADTPSVPSPTD-LSTVVTPSLPNPTD 63
+ + T SL + SPT + P S +P+
Sbjct: 78 EAPANESRSTPTWSLSTLAPASPAREGSPTPPGPSSPDPPPPTPPPASPPPSPAPDLSEM 137
Query: 64 LNIAKTPSVPSPTDRSTAETPSLPNPTDLSTVVTPSLPNPTDLSTVETP------NLPDR 117
L +P P A +D ++ +LP + T P P
Sbjct: 138 LRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPLSSPEETARAPSSPPAEPPPST 197
Query: 118 STAETPSLPNPTDRSTVVTPSLPNPTDRSTVETPNLPDRSTAETPSLPNPTDLSTVETPS 177
A P + S P P + S + + E P
Sbjct: 198 PPAAASPRPPRRSSPISASASSPAPAPGRSAADDAGASSSDSSSSESSGCGWGPENECPL 257
Query: 178 VPSPTDRSTAETPSLPSPTDRSTAETPSLPNPTDLSTAETPSLPNPPDRSTA 229
S+ P+ + + + +PS +P
Sbjct: 258 PRPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPSPSPSSPGSGPAP 309
Score = 28.2 bits (63), Expect = 4.7
Identities = 37/217 (17%), Positives = 59/217 (27%), Gaps = 15/217 (6%)
Query: 20 PNPLDRNTTETPSPTDRSTADTPSVPS--PTDLSTVVTPSLPNPTDLNIAKTPSVPSPTD 77
P P ++ + P PT + PS L V +P P A +D
Sbjct: 106 PTPPGPSSPDPPPPTPPPASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASD 165
Query: 78 RSTAETPSLPNPTDLSTVVTPSLPNPTDLSTVETPNLPDRSTAETPSLPNPTDRSTVVTP 137
+++ +LP + T PS P P A P +
Sbjct: 166 AASSRQAALPLSSPEETARAPSSPPA--------EPPPSTPPAAASPRPPRRSSPISASA 217
Query: 138 SLPNPTDRSTVETPNLPDRSTAETPSLPNPTDLSTVETP-----SVPSPTDRSTAETPSL 192
S P P + S + + E P + PT A +
Sbjct: 218 SSPAPAPGRSAADDAGASSSDSSSSESSGCGWGPENECPLPRPAPITLPTRIWEASGWNG 277
Query: 193 PSPTDRSTAETPSLPNPTDLSTAETPSLPNPPDRSTA 229
PS + + S + + +P P A
Sbjct: 278 PSSRPGPASSSSSPRERSPSPSPSSPGSGPAPSSPRA 314
Score = 27.8 bits (62), Expect = 5.8
Identities = 24/152 (15%), Positives = 42/152 (27%), Gaps = 10/152 (6%)
Query: 74 SPTDRSTAETPSLPNPTDLSTVVTPSLPNPTDLSTVETPNLPDRSTAETPSLPNPTDRST 133
+ T + A P + + + T +L + A +PT
Sbjct: 52 AVTVVAGAAACDRFEPPTGPPPGPGTEAPANESRSTPTWSLSTLAPASPAREGSPTPPGP 111
Query: 134 VVTPSLPNPTDRSTVETPNLPDRSTAETPSLPNPTDLSTVETPSVPSPTDRSTAETPSLP 193
P + S +P+ L V +P P A
Sbjct: 112 SSPDPPPPTPPPA----------SPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAA 161
Query: 194 SPTDRSTAETPSLPNPTDLSTAETPSLPNPPD 225
+D +++ +LP + TA PS P
Sbjct: 162 VASDAASSRQAALPLSSPEETARAPSSPPAEP 193
>gnl|CDD|224319 COG1401, McrB, GTPase subunit of restriction endonuclease [Defense
mechanisms].
Length = 601
Score = 28.6 bits (64), Expect = 3.5
Identities = 13/49 (26%), Positives = 19/49 (38%)
Query: 70 PSVPSPTDRSTAETPSLPNPTDLSTVVTPSLPNPTDLSTVETPNLPDRS 118
S S AE+ + D+ +L P +L V T N D+S
Sbjct: 362 KSKKSGEGNKEAESEPIKIHDDVIANKVIALRIPENLYLVGTMNTIDKS 410
>gnl|CDD|233709 TIGR02073, PBP_1c, penicillin-binding protein 1C. This subfamily
of the penicillin binding proteins includes the member
from E. coli designated penicillin-binding protein 1C.
Members have both transglycosylase and transpeptidase
domains and are involved in forming cross-links in the
late stages of peptidoglycan biosynthesis. All members
of this subfamily are presumed to have the same basic
function [Cell envelope, Biosynthesis and degradation of
murein sacculus and peptidoglycan].
Length = 727
Score = 28.2 bits (63), Expect = 4.2
Identities = 18/110 (16%), Positives = 27/110 (24%), Gaps = 3/110 (2%)
Query: 121 ETPSLPNPTDRSTV--VTPSLPNPTDRSTVETPNLPDRSTAETPSLPNPTDLSTVETPSV 178
E +LP P V +LP + T LP S P + E +
Sbjct: 547 EASTLPRPLKEVPGCLVLGNLPILPCPEQISTWFLPGGSPPTLSEPHKPVVILINEGIAA 606
Query: 179 PSPTDRSTAETPSLPSPTDRSTAETPSLPNPTDLSTAETPSLPNPPDRST 228
P + +L L + + P D
Sbjct: 607 CLPDKPEARQKLALFDVAAYFAQAGLPKR-KPLLERNASLIISPPLDGIY 655
>gnl|CDD|222447 pfam13904, DUF4207, Domain of unknown function (DUF4207). This
family is found in eukaryotes; it has several conserved
tryptophan residues. The function is not known.
Length = 261
Score = 27.8 bits (62), Expect = 4.8
Identities = 18/75 (24%), Positives = 28/75 (37%), Gaps = 9/75 (12%)
Query: 16 TLSLPNPLDRNTTETPSPTDRSTADTPSVPSPTDLSTVVTPSLPNPTDLNIAKTPSVPSP 75
T SL +PL SP+ + S S S + + + + SVPS
Sbjct: 7 TRSLLSPL----GNELSPSSSDETEDCSEESTDSWSDMYEGLKDSE-----SSSNSVPSL 57
Query: 76 TDRSTAETPSLPNPT 90
+ STA + S +
Sbjct: 58 SLSSTASSLSDSSTY 72
>gnl|CDD|218191 pfam04652, DUF605, Vta1 like. Vta1 (VPS20-associated protein 1) is
a positive regulator of Vps4. Vps4 is an ATPase that is
required in the multivesicular body (MVB) sorting
pathway to dissociate the endosomal sorting complex
required for transport (ESCRT). Vta1 promotes correct
assembly of Vps4 and stimulates its ATPase activity
through its conserved Vta1/SBP1/LIP5 region.
Length = 315
Score = 27.7 bits (62), Expect = 5.4
Identities = 19/115 (16%), Positives = 28/115 (24%), Gaps = 2/115 (1%)
Query: 110 ETPNLPDRSTAETPSLPNPTDRSTVVTPSLPNPTDRSTVETPNLPDRSTAETPSLPNPTD 169
E PN E T S P ++ P PS P
Sbjct: 146 EDPNPGPPLDEEDEDADVATTNSDNSFPGEDADPASASPSDPPSSSPGVPSFPSPPEDPS 205
Query: 170 LSTVETPSVPSPTDRSTAETPSLPSPTDRSTAETPSLPNPTDLSTAETPSLPNPP 224
+ + P+P+ + P P + P P + P L
Sbjct: 206 SPSDSSLP-PAPSSFQSDTPPPSPESPTNPSP-PPGPAAPPPPPVQQVPPLSTAK 258
>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed.
Length = 1228
Score = 27.9 bits (63), Expect = 5.5
Identities = 15/80 (18%), Positives = 25/80 (31%), Gaps = 1/80 (1%)
Query: 149 ETPNLPDRSTAETPSLPNPTDLSTVETPSVPSPTDRSTAETPSLPSPTDRSTAETPSLPN 208
T + A + P + P+ P+P + A + P P + A
Sbjct: 40 STAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAA- 98
Query: 209 PTDLSTAETPSLPNPPDRST 228
P + A P+ D T
Sbjct: 99 PPAAAAAAAPAAAAVEDEVT 118
>gnl|CDD|219355 pfam07267, Nucleo_P87, Nucleopolyhedrovirus capsid protein P87.
This family consists of several Nucleopolyhedrovirus
capsid protein P87 sequences. P87 is expressed late in
infection and concentrated in infected cell nuclei.
Length = 606
Score = 27.9 bits (62), Expect = 5.5
Identities = 22/115 (19%), Positives = 31/115 (26%), Gaps = 9/115 (7%)
Query: 26 NTTETPSPTDRSTADTPSVPSPTDLSTVVTPSLPNPTDLNIAKTPSVPSPTDRSTAETPS 85
TP+ T + P+ T + TP P T +
Sbjct: 262 RQKNTPAQTPMPERSWQT-PAQTPARRISTPMTEEIKSW------QTPLQTPAMYSSDYQ 314
Query: 86 LPNPTDLSTVVTPSLPNPTDLSTVETPNLPDRSTAETPSLPNPTDRSTVVTPSLP 140
P P + T L +LPD + + S P R P LP
Sbjct: 315 APKPEPIYTWEEL-LRERFPSDLFAISSLPDSDSEASDSGPT-RKRKRRRVPPLP 367
>gnl|CDD|237019 PRK11907, PRK11907, bifunctional 2',3'-cyclic nucleotide
2'-phosphodiesterase/3'-nucleotidase precursor protein;
Reviewed.
Length = 814
Score = 27.9 bits (62), Expect = 5.5
Identities = 14/77 (18%), Positives = 25/77 (32%), Gaps = 3/77 (3%)
Query: 120 AETPSLPNPTDRSTVVTPSLPNPTDRSTVETPNLPDRSTAETPSLPNPTDLSTVETPSV- 178
+ ST + P + E + + A T + P+ T ET
Sbjct: 27 QAEEIVTTTPATSTEAEQT--TPVESDATEEADNTETPVAATTAAEAPSSSETAETSDPT 84
Query: 179 PSPTDRSTAETPSLPSP 195
TD +T+E ++
Sbjct: 85 SEATDTTTSEARTVTPA 101
>gnl|CDD|212073 cd11504, SLC5sbd_SMVT, Na(+)/multivitamin cotransporter SMVT and
related proteins; solute-binding domain. This
multivitamin transporter SMVT (product of the SLC5A6
gene) transports biotin, pantothenic acid and lipoate,
and is essential for mediating biotin uptake into
mammalian cells. SMVT is expressed in the placenta,
intestine, heart, brain, lung, liver, kidney and
pancreas. Biotin may regulate its own cellular uptake
through participation in holocarboxylase
synthetase-dependent chromatin remodeling events at SMVT
promoter loci. The cis regulatory elements, Kruppel-like
factor 4 and activator protein-2, regulate the activity
of the human SMVT promoter in the intestine.
Glycosylation of the hSMVT is important for its
transport function. This subgroup belongs to the solute
carrier 5 (SLC5) transporter family.
Length = 527
Score = 27.9 bits (62), Expect = 5.7
Identities = 15/54 (27%), Positives = 21/54 (38%), Gaps = 8/54 (14%)
Query: 46 SPTDLSTVVTPSLPNPTDLNIAKTPSVPSPTDRSTAETPSLPNPTDLSTVVTPS 99
SPT + PN T+ A TP+ TP+ P P L + + S
Sbjct: 458 SPTKSPPINDTIFPNVTNATAA-TPTTLFA-------TPTDPRPPGLQALYSLS 503
>gnl|CDD|226406 COG3889, COG3889, Predicted solute binding protein [General
function prediction only].
Length = 872
Score = 27.9 bits (62), Expect = 6.7
Identities = 19/93 (20%), Positives = 29/93 (31%), Gaps = 10/93 (10%)
Query: 5 LPNPTDLSTVETLSLPNPLDRNTTETPSPTDRSTADTPSVPSPTDLSTVVTPSLPNPTDL 64
S T +P + T + T S + + + ++VV T
Sbjct: 762 TGTSITTSGTFTAEVP------QSPTKTETTLSYSAYSNTSILIETTSVVITKTVTQT-- 813
Query: 65 NIAKTPSVPSPTDRSTAETPSLPNPTDLSTVVT 97
T S PSPT ++ S T S T
Sbjct: 814 --QTTTSSPSPTQTTSPTQTSTSTTTTTSPSQT 844
Score = 27.5 bits (61), Expect = 7.0
Identities = 16/88 (18%), Positives = 26/88 (29%), Gaps = 6/88 (6%)
Query: 121 ETPSLPNPTDRS---TVVTPSLPNPTDRSTVETPNLPDRSTAETPSLPNPTDLSTVETPS 177
S T P P T+ +T+ + S + T T +
Sbjct: 758 PASGTGTSITTSGTFTAEVPQSPTKTE-TTLSYSAYSNTSILIETTSVVITKTVTQTQTT 816
Query: 178 VPSPTDRSTAETPSLPSPTDRSTAETPS 205
SP+ T + T +T +PS
Sbjct: 817 TSSPSPTQTTSPTQTSTST--TTTTSPS 842
>gnl|CDD|139494 PRK13335, PRK13335, superantigen-like protein; Reviewed.
Length = 356
Score = 27.0 bits (59), Expect = 9.1
Identities = 22/113 (19%), Positives = 37/113 (32%), Gaps = 8/113 (7%)
Query: 107 STVETPNLPDRSTAETPSLPNPTDRSTVVTPSLP-NPTDRSTVETPNLPDRSTAETPSLP 165
+T + N T + PN + T + + + ++ N+ A
Sbjct: 61 ATTQAANTRQERTPKLEKAPNTNEEKTSASKIEKISQPKQEEQKSLNISATP-APKQEQS 119
Query: 166 NPTDLSTVETPSVPSPTDRSTAETPSLPSPTDRSTAETPSLPNPTDLSTAETP 218
T ST V +P +T P P + ++TP P T TP
Sbjct: 120 QTTTESTTPKTKVTTPPSTNT------PQPMQSTKSDTPQSPTIKQAQTDMTP 166
>gnl|CDD|130706 TIGR01645, half-pint, poly-U binding splicing factor, half-pint
family. The proteins represented by this model contain
three RNA recognition motifs (rrm: pfam00076) and have
been characterized as poly-pyrimidine tract binding
proteins associated with RNA splicing factors. In the
case of PUF60 (GP|6176532), in complex with p54, and in
the presence of U2AF, facilitates association of U2
snRNP with pre-mRNA.
Length = 612
Score = 27.3 bits (60), Expect = 9.6
Identities = 17/67 (25%), Positives = 27/67 (40%), Gaps = 1/67 (1%)
Query: 159 AETPSLPNPTDLSTVETPSVPSPTDRSTAETPSLPSPTDRSTAETP-SLPNPTDLSTAET 217
A++P+ P+ + + + +V S + E P LP P +P P
Sbjct: 328 AQSPATPSSSLPTDIGNKAVVSSAKKEAEEVPPLPQAAPAVVKPGPMEIPTPVPPPGLAI 387
Query: 218 PSLPNPP 224
PSL PP
Sbjct: 388 PSLVAPP 394
>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 614
Score = 27.0 bits (60), Expect = 9.7
Identities = 21/136 (15%), Positives = 38/136 (27%), Gaps = 12/136 (8%)
Query: 29 ETPSPTDRSTADTPSV--PSPTDLSTVVTPSLPNPTDLNIAKTPSVPSPTDRSTAETP-- 84
+ P P+ + + P+P+ + A PS P A TP
Sbjct: 368 DASGGRGPKQHIKPVFTQPAAAPQPSAAAAASPSPSQSSAAAQPSAPQSA-TQPAGTPPT 426
Query: 85 ---SLPNPTDLSTVVTPSLPNPTDLSTVETPNLPDRSTAETPSLPNP----TDRSTVVTP 137
P ++ T E + ++ PS P +++T
Sbjct: 427 VSVDPPAAVPVNPPSTAPQAVRPAQFKEEKKIPVSKVSSLGPSTLRPIQEKAEQATGNIK 486
Query: 138 SLPNPTDRSTVETPNL 153
P T + +L
Sbjct: 487 EAPTGTQKEIFTEEDL 502
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.300 0.120 0.340
Gapped
Lambda K H
0.267 0.0675 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 11,686,521
Number of extensions: 1038667
Number of successful extensions: 2083
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1416
Number of HSP's successfully gapped: 472
Length of query: 240
Length of database: 10,937,602
Length adjustment: 94
Effective length of query: 146
Effective length of database: 6,768,326
Effective search space: 988175596
Effective search space used: 988175596
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 17 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.7 bits)
S2: 57 (25.8 bits)