BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9499
(289 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2HDC|A Chain A, Structure Of Transcription Factor GenesisDNA COMPLEX
Length = 97
Score = 195 bits (496), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 91/96 (94%), Positives = 93/96 (96%)
Query: 124 KPPYSYIALITMAILQSPHKKLTLSGICEFIMSRFPYYREKFPAWQNSIRHNLSLNDCFV 183
KPPYSYIALITMAILQSP KKLTLSGICEFI +RFPYYREKFPAWQNSIRHNLSLNDCFV
Sbjct: 2 KPPYSYIALITMAILQSPQKKLTLSGICEFISNRFPYYREKFPAWQNSIRHNLSLNDCFV 61
Query: 184 KIPREPGNPGKGNYWTLDPMAEDMFDNGSFLRRRKR 219
KIPREPGNPGKGNYWTLDP +EDMFDNGSFLRRRKR
Sbjct: 62 KIPREPGNPGKGNYWTLDPQSEDMFDNGSFLRRRKR 97
>pdb|2HFH|A Chain A, The Nmr Structures Of A Winged Helix Protein: Genesis, 20
Structures
Length = 109
Score = 184 bits (466), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 85/90 (94%), Positives = 87/90 (96%)
Query: 123 VKPPYSYIALITMAILQSPHKKLTLSGICEFIMSRFPYYREKFPAWQNSIRHNLSLNDCF 182
VKPPYSYIALITMAILQSP KKLTLSGICEFI +RFPYYREKFPAWQNSIRHNLSLNDCF
Sbjct: 2 VKPPYSYIALITMAILQSPQKKLTLSGICEFISNRFPYYREKFPAWQNSIRHNLSLNDCF 61
Query: 183 VKIPREPGNPGKGNYWTLDPMAEDMFDNGS 212
VKIPREPGNPGKGNYWTLDP +EDMFDNGS
Sbjct: 62 VKIPREPGNPGKGNYWTLDPQSEDMFDNGS 91
>pdb|1D5V|A Chain A, Solution Structure Of The Forkhead Domain Of The
Adipocyte- Transcription Factor Freac-11 (S12)
Length = 94
Score = 146 bits (368), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 66/93 (70%), Positives = 79/93 (84%)
Query: 122 IVKPPYSYIALITMAILQSPHKKLTLSGICEFIMSRFPYYREKFPAWQNSIRHNLSLNDC 181
+VKPPYSYIALITMAI +P KK+TL+GI +FIM RFP+YRE WQNSIRHNLSLN+C
Sbjct: 2 LVKPPYSYIALITMAIQNAPEKKITLNGIYQFIMDRFPFYRENKQGWQNSIRHNLSLNEC 61
Query: 182 FVKIPREPGNPGKGNYWTLDPMAEDMFDNGSFL 214
FVK+PR+ PGKG+YWTLDP + +MF+NGSFL
Sbjct: 62 FVKVPRDDKKPGKGSYWTLDPDSYNMFENGSFL 94
>pdb|1VTN|C Chain C, Co-Crystal Structure Of The Hnf-3FORK HEAD DNA-Recognition
Motif Resembles Histone H5
Length = 102
Score = 139 bits (350), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 64/99 (64%), Positives = 77/99 (77%)
Query: 123 VKPPYSYIALITMAILQSPHKKLTLSGICEFIMSRFPYYREKFPAWQNSIRHNLSLNDCF 182
KPPYSYI+LITMAI Q+P K LTLS I ++IM FPYYRE WQNSIRH+LS NDCF
Sbjct: 2 AKPPYSYISLITMAIQQAPGKMLTLSEIYQWIMDLFPYYRENQQRWQNSIRHSLSFNDCF 61
Query: 183 VKIPREPGNPGKGNYWTLDPMAEDMFDNGSFLRRRKRYK 221
VK+ R P PGKG+YW L P + +MF+NG +LRR+KR+K
Sbjct: 62 VKVARSPDKPGKGSYWALHPSSGNMFENGCYLRRQKRFK 100
>pdb|1KQ8|A Chain A, Solution Structure Of Winged Helix Protein Hfh-1
Length = 100
Score = 120 bits (300), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 57/97 (58%), Positives = 72/97 (74%), Gaps = 1/97 (1%)
Query: 124 KPPYSYIALITMAILQSPHKKLTLSGICEFIMSRFPYYREKFPAWQNSIRHNLSLNDCFV 183
KPPYSYIALITMAI S +LTL+ I E++M +FP++R + W+NS+RHNLSLNDCFV
Sbjct: 2 KPPYSYIALITMAIRDSAGGRLTLAEINEYLMGKFPFFRGSYTGWRNSVRHNLSLNDCFV 61
Query: 184 KIPREPGNP-GKGNYWTLDPMAEDMFDNGSFLRRRKR 219
K+ R+P P GK NYW L+P +E F +G F RRR R
Sbjct: 62 KVLRDPSRPWGKDNYWMLNPNSEYTFADGVFRRRRYR 98
>pdb|2C6Y|A Chain A, Crystal Structure Of Interleukin Enhancer-Binding Factor 1
Bound To Dna
pdb|2C6Y|B Chain B, Crystal Structure Of Interleukin Enhancer-Binding Factor 1
Bound To Dna
Length = 111
Score = 113 bits (282), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 53/105 (50%), Positives = 67/105 (63%)
Query: 115 KQDGKNSIVKPPYSYIALITMAILQSPHKKLTLSGICEFIMSRFPYYREKFPAWQNSIRH 174
+Q G+ S KPPYSY LI AI +P K+LTL+GI I +PYYR WQNSIRH
Sbjct: 7 QQMGRGSDSKPPYSYAQLIVQAITMAPDKQLTLNGIYTHITKNYPYYRTADKGWQNSIRH 66
Query: 175 NLSLNDCFVKIPREPGNPGKGNYWTLDPMAEDMFDNGSFLRRRKR 219
NLSLN F+K+PR PGKG++W +DP +E +F +RR R
Sbjct: 67 NLSLNRYFIKVPRSQEEPGKGSFWRIDPASESKLIEQAFRKRRPR 111
>pdb|1JXS|A Chain A, Solution Structure Of The Dna-Binding Domain Of
Interleukin Enhancer Binding Factor
Length = 98
Score = 108 bits (271), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 50/96 (52%), Positives = 62/96 (64%)
Query: 124 KPPYSYIALITMAILQSPHKKLTLSGICEFIMSRFPYYREKFPAWQNSIRHNLSLNDCFV 183
KPPYSY LI AI +P K+LTL+GI I +PYYR WQNSIRHNLSLN F+
Sbjct: 3 KPPYSYAQLIVQAITMAPDKQLTLNGIYTHITKNYPYYRTADKGWQNSIRHNLSLNRYFI 62
Query: 184 KIPREPGNPGKGNYWTLDPMAEDMFDNGSFLRRRKR 219
K+PR PGKG++W +DP +E +F +RR R
Sbjct: 63 KVPRSQEEPGKGSFWRIDPASESKLIEQAFRKRRPR 98
>pdb|2A3S|A Chain A, Solution Structure And Dynamics Of Dna-Binding Domain Of
Myocyte Nuclear Factor
pdb|2D2W|A Chain A, Solution Structure And Dynamics Of The Dna-Binding Domain
Of Myocyte Nuclear Factor
Length = 101
Score = 108 bits (270), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 49/96 (51%), Positives = 62/96 (64%)
Query: 124 KPPYSYIALITMAILQSPHKKLTLSGICEFIMSRFPYYREKFPAWQNSIRHNLSLNDCFV 183
KPPYSY LI AI + ++LTLSGI I +PYYR WQNSIRHNLSLN F+
Sbjct: 3 KPPYSYAQLIVQAISSAQDRQLTLSGIYAHITKHYPYYRTADKGWQNSIRHNLSLNRYFI 62
Query: 184 KIPREPGNPGKGNYWTLDPMAEDMFDNGSFLRRRKR 219
K+PR PGKG++W +DP +E +F +RR+R
Sbjct: 63 KVPRSQEEPGKGSFWRIDPASEAKLVEQAFRKRRQR 98
>pdb|2KIU|A Chain A, Solution Structure And Backbone Dynamics Of The
Dna-Binding Domain Of Foxp1: Insight Into Its Domain
Swapping
Length = 87
Score = 78.6 bits (192), Expect = 3e-15, Method: Composition-based stats.
Identities = 35/79 (44%), Positives = 51/79 (64%), Gaps = 5/79 (6%)
Query: 123 VKPPYSYIALITMAILQSPHKKLTLSGICEFIMSRFPYYREKFPAWQNSIRHNLSLNDCF 182
V+PP++Y +LI AIL+SP K+LTL+ I + FPY+R W+N++RHNLSL+ F
Sbjct: 3 VRPPFTYASLIRQAILESPEKQLTLNEIYNWFTRMFPYFRRNAATWKNAVRHNLSLHKYF 62
Query: 183 VKIPREPGNPGKGNYWTLD 201
V++ KG WT+D
Sbjct: 63 VRVENV-----KGAVWTVD 76
>pdb|3G73|A Chain A, Structure Of The Foxm1 Dna Binding
pdb|3G73|B Chain B, Structure Of The Foxm1 Dna Binding
Length = 142
Score = 78.2 bits (191), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 45/100 (45%), Positives = 61/100 (61%), Gaps = 7/100 (7%)
Query: 107 PGPEGDSDKQDGKNSIV-KPPYSYIALITMAILQSPHKKLTLSGICEFIMSRFPYYRE-K 164
PGP S +NS+ +PPYSY+A+I AI + K++TL I +I FPY++
Sbjct: 2 PGPSRPS--ASWQNSVSERPPYSYMAMIQFAINSTERKRMTLKDIYTWIEDHFPYFKHIA 59
Query: 165 FPAWQNSIRHNLSLNDCFVKIPREPGNPGKGNYWTLDPMA 204
P W+NSIRHNLSL+D FV RE GK ++WT+ P A
Sbjct: 60 KPGWKNSIRHNLSLHDMFV---RETSANGKVSFWTIHPSA 96
>pdb|2A07|F Chain F, Crystal Structure Of Foxp2 Bound Specifically To Dna.
pdb|2A07|G Chain G, Crystal Structure Of Foxp2 Bound Specifically To Dna.
pdb|2A07|H Chain H, Crystal Structure Of Foxp2 Bound Specifically To Dna.
pdb|2A07|I Chain I, Crystal Structure Of Foxp2 Bound Specifically To Dna.
pdb|2A07|J Chain J, Crystal Structure Of Foxp2 Bound Specifically To Dna.
pdb|2A07|K Chain K, Crystal Structure Of Foxp2 Bound Specifically To Dna.
pdb|2AS5|F Chain F, Structure Of The Dna Binding Domains Of Nfat And Foxp2
Bound Specifically To Dna.
pdb|2AS5|G Chain G, Structure Of The Dna Binding Domains Of Nfat And Foxp2
Bound Specifically To Dna
Length = 93
Score = 75.9 bits (185), Expect = 3e-14, Method: Composition-based stats.
Identities = 33/80 (41%), Positives = 50/80 (62%), Gaps = 5/80 (6%)
Query: 122 IVKPPYSYIALITMAILQSPHKKLTLSGICEFIMSRFPYYREKFPAWQNSIRHNLSLNDC 181
IV+PP++Y LI AI++S ++LTL+ I + F Y+R W+N++RHNLSL+ C
Sbjct: 1 IVRPPFTYATLIRQAIMESSDRQLTLNEIYSWFTRTFAYFRRNAATWKNAVRHNLSLHKC 60
Query: 182 FVKIPREPGNPGKGNYWTLD 201
FV++ KG WT+D
Sbjct: 61 FVRVENV-----KGAVWTVD 75
>pdb|3QRF|F Chain F, Structure Of A Domain-Swapped Foxp3 Dimer
pdb|3QRF|G Chain G, Structure Of A Domain-Swapped Foxp3 Dimer
pdb|3QRF|H Chain H, Structure Of A Domain-Swapped Foxp3 Dimer
pdb|3QRF|I Chain I, Structure Of A Domain-Swapped Foxp3 Dimer
Length = 82
Score = 75.5 bits (184), Expect = 3e-14, Method: Composition-based stats.
Identities = 33/81 (40%), Positives = 51/81 (62%), Gaps = 5/81 (6%)
Query: 123 VKPPYSYIALITMAILQSPHKKLTLSGICEFIMSRFPYYREKFPAWQNSIRHNLSLNDCF 182
++PP++Y LI AIL++P K+ TL+ I + F ++R W+N+IRHNLSL+ CF
Sbjct: 1 MRPPFTYATLIRWAILEAPEKQRTLNEIYHWFTRMFAFFRNHPATWKNAIRHNLSLHKCF 60
Query: 183 VKIPREPGNPGKGNYWTLDPM 203
V++ E KG WT+D +
Sbjct: 61 VRVESE-----KGAVWTVDEL 76
>pdb|3CO7|C Chain C, Crystal Structure Of Foxo1 Dbd Bound To Dbe2 Dna
pdb|3CO7|F Chain F, Crystal Structure Of Foxo1 Dbd Bound To Dbe2 Dna
pdb|3COA|C Chain C, Crystal Structure Of Foxo1 Dbd Bound To Ire Dna
pdb|3COA|F Chain F, Crystal Structure Of Foxo1 Dbd Bound To Ire Dna
Length = 117
Score = 70.5 bits (171), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 50/80 (62%), Gaps = 7/80 (8%)
Query: 128 SYIALITMAILQSPHKKLTLSGICEFIMSRFPYYREK-----FPAWQNSIRHNLSLNDCF 182
SY LIT AI S K+LTLS I E+++ PY+++K W+NSIRHNLSL+ F
Sbjct: 15 SYADLITKAIESSAEKRLTLSQIYEWMVKSVPYFKDKGDSNSSAGWKNSIRHNLSLHSKF 74
Query: 183 VKIPREPGNPGKGNYWTLDP 202
+++ E GK ++W L+P
Sbjct: 75 IRVQNE--GTGKSSWWMLNP 92
>pdb|1E17|A Chain A, Solution Structure Of The Dna Binding Domain Of The Human
Forkhead Transcription Factor Afx (Foxo4)
Length = 150
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 51/80 (63%), Gaps = 7/80 (8%)
Query: 128 SYIALITMAILQSPHKKLTLSGICEFIMSRFPYYREK-----FPAWQNSIRHNLSLNDCF 182
SY LI+ AI +P K+LTL+ I E+++ PY+++K W+NSIRHNLSL+ F
Sbjct: 44 SYAELISQAIESAPEKRLTLAQIYEWMVRTVPYFKDKGDSNSSAGWKNSIRHNLSLHSKF 103
Query: 183 VKIPREPGNPGKGNYWTLDP 202
+K+ E GK ++W L+P
Sbjct: 104 IKVHNEA--TGKSSWWMLNP 121
>pdb|3CO6|C Chain C, Crystal Structure Of Foxo1 Dbd Bound To Dbe1 Dna
Length = 100
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 50/80 (62%), Gaps = 7/80 (8%)
Query: 128 SYIALITMAILQSPHKKLTLSGICEFIMSRFPYYREK-----FPAWQNSIRHNLSLNDCF 182
SY LIT AI S K+LTLS I E+++ PY+++K W+NSIRHNLSL+ F
Sbjct: 15 SYADLITKAIESSAEKRLTLSQIYEWMVKSVPYFKDKGDSNSSAGWKNSIRHNLSLHSKF 74
Query: 183 VKIPREPGNPGKGNYWTLDP 202
+++ E GK ++W L+P
Sbjct: 75 IRVQNE--GTGKSSWWMLNP 92
>pdb|3L2C|A Chain A, Crystal Structure Of The Dna Binding Domain Of Foxo4 Bound
To Dna
Length = 110
Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 51/80 (63%), Gaps = 7/80 (8%)
Query: 128 SYIALITMAILQSPHKKLTLSGICEFIMSRFPYYREK-----FPAWQNSIRHNLSLNDCF 182
SY LI+ AI +P K+LTL+ I E+++ PY+++K W+NSIRHNLSL+ F
Sbjct: 28 SYAELISQAIESAPEKRLTLAQIYEWMVRTVPYFKDKGDSNSSAGWKNSIRHNLSLHSKF 87
Query: 183 VKIPREPGNPGKGNYWTLDP 202
+K+ E GK ++W L+P
Sbjct: 88 IKVHNEA--TGKSSWWMLNP 105
>pdb|2K86|A Chain A, Solution Structure Of Foxo3a Forkhead Domain
Length = 103
Score = 68.2 bits (165), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 40/95 (42%), Positives = 57/95 (60%), Gaps = 10/95 (10%)
Query: 128 SYIALITMAILQSPHKKLTLSGICEFIMSRFPYYREK-----FPAWQNSIRHNLSLNDCF 182
SY LIT AI SP K+LTLS I E+++ PY+++K W+NSIRHNLSL+ F
Sbjct: 13 SYADLITRAIESSPDKRLTLSQIYEWMVRCVPYFKDKGDSNSSAGWKNSIRHNLSLHSRF 72
Query: 183 VKIPREPGNPGKGNYWTLDPMAEDMFDNGSFLRRR 217
+++ E GK ++W ++P D +G RRR
Sbjct: 73 MRVQNE--GTGKSSWWIINP---DGGKSGKAPRRR 102
>pdb|2UZK|A Chain A, Crystal Structure Of The Human Foxo3a-Dbd Bound To Dna
pdb|2UZK|C Chain C, Crystal Structure Of The Human Foxo3a-Dbd Bound To Dna
Length = 97
Score = 67.8 bits (164), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 40/95 (42%), Positives = 57/95 (60%), Gaps = 10/95 (10%)
Query: 128 SYIALITMAILQSPHKKLTLSGICEFIMSRFPYYREK-----FPAWQNSIRHNLSLNDCF 182
SY LIT AI SP K+LTLS I E+++ PY+++K W+NSIRHNLSL+ F
Sbjct: 5 SYADLITRAIESSPDKRLTLSQIYEWMVRCVPYFKDKGDSNSSAGWKNSIRHNLSLHSRF 64
Query: 183 VKIPREPGNPGKGNYWTLDPMAEDMFDNGSFLRRR 217
+++ E GK ++W ++P D +G RRR
Sbjct: 65 MRVQNE--GTGKSSWWIINP---DGGKSGKAPRRR 94
>pdb|3RBB|A Chain A, Hiv-1 Nef Protein In Complex With Engineered Hck Sh3
Domain
pdb|3RBB|C Chain C, Hiv-1 Nef Protein In Complex With Engineered Hck Sh3
Domain
pdb|3REA|A Chain A, Hiv-1 Nef Protein In Complex With Engineered Hck-Sh3
Domain
pdb|3REA|C Chain C, Hiv-1 Nef Protein In Complex With Engineered Hck-Sh3
Domain
pdb|3REB|A Chain A, Hiv-1 Nef Protein In Complex With Engineered Hck-Sh3
Domain
pdb|3REB|C Chain C, Hiv-1 Nef Protein In Complex With Engineered Hck-Sh3
Domain
Length = 166
Score = 28.1 bits (61), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 5/37 (13%)
Query: 165 FPAWQN-----SIRHNLSLNDCFVKIPREPGNPGKGN 196
FP WQN IR+ L+ CF +P EP + N
Sbjct: 81 FPDWQNYTPGPGIRYPLTFGWCFKLVPVEPEKVEEAN 117
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.139 0.442
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,635,162
Number of Sequences: 62578
Number of extensions: 349342
Number of successful extensions: 526
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 500
Number of HSP's gapped (non-prelim): 21
length of query: 289
length of database: 14,973,337
effective HSP length: 98
effective length of query: 191
effective length of database: 8,840,693
effective search space: 1688572363
effective search space used: 1688572363
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)