Query psy9499
Match_columns 289
No_of_seqs 214 out of 833
Neff 4.4
Searched_HMMs 29240
Date Fri Aug 16 20:56:03 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9499.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9499hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vtn_C HNF-3/FORK head DNA-rec 100.0 4.4E-46 1.5E-50 301.4 6.0 101 122-222 1-101 (102)
2 2hdc_A Protein (transcription 100.0 5E-46 1.7E-50 298.7 3.7 97 123-219 1-97 (97)
3 2hfh_A Genesis, HFH-2; HNF-3 h 100.0 1.6E-45 5.6E-50 301.3 4.4 103 122-224 1-103 (109)
4 1kq8_A HFH-1, hepatocyte nucle 100.0 2.3E-45 8E-50 296.3 5.2 98 123-220 1-99 (100)
5 2c6y_A Forkhead box protein K2 100.0 1.1E-44 3.7E-49 297.3 3.4 102 118-219 10-111 (111)
6 3l2c_A Forkhead box protein O4 100.0 7.1E-39 2.4E-43 262.3 5.6 88 117-206 17-109 (110)
7 3coa_C Forkhead box protein O1 100.0 1E-38 3.5E-43 264.0 5.4 86 118-205 5-95 (117)
8 3bpy_A FORK head domain, forkh 100.0 2.3E-38 7.7E-43 248.7 5.5 78 122-201 3-85 (85)
9 2a07_F Forkhead box protein P2 100.0 6.3E-39 2.2E-43 255.9 0.4 87 123-222 2-88 (93)
10 1e17_A AFX; DNA binding domain 100.0 3.4E-38 1.2E-42 270.4 3.9 98 115-217 31-133 (150)
11 3g73_A Forkhead box protein M1 100.0 4E-37 1.4E-41 261.8 4.8 96 119-217 13-110 (142)
12 1uss_A Histone H1; DNA binding 88.0 0.55 1.9E-05 36.2 4.3 32 128-159 9-41 (88)
13 1uhm_A Histone H1, histone HHO 87.9 0.44 1.5E-05 35.8 3.6 33 128-160 6-39 (78)
14 1hst_A Histone H5; chromosomal 85.8 0.7 2.4E-05 35.9 3.8 32 128-159 9-41 (90)
15 2rqp_A Heterochromatin protein 84.5 0.47 1.6E-05 36.4 2.3 34 128-161 11-45 (88)
16 1ust_A Histone H1; DNA binding 83.8 0.74 2.5E-05 36.0 3.1 32 128-159 9-41 (93)
17 2lso_A Histone H1X; structural 72.0 1 3.4E-05 34.5 0.0 34 126-159 5-39 (83)
18 1ghc_A GH1; chromosomal protei 46.5 2.7 9.4E-05 30.8 -1.0 30 128-157 5-35 (75)
19 2kpm_A Uncharacterized protein 30.6 1.3E+02 0.0045 23.8 6.4 37 128-164 21-59 (105)
20 4aw0_A HPDK1, 3-phosphoinositi 26.5 18 0.0006 33.2 0.7 39 129-170 261-301 (311)
21 3rsn_A SET1/ASH2 histone methy 24.6 35 0.0012 29.6 2.2 65 121-185 63-143 (177)
22 2kzv_A Uncharacterized protein 23.3 1.5E+02 0.005 22.8 5.4 41 127-167 7-49 (92)
23 1mzb_A Ferric uptake regulatio 21.5 91 0.0031 24.5 4.0 30 131-160 21-50 (136)
24 3hyh_A Carbon catabolite-derep 20.3 47 0.0016 29.5 2.3 32 129-160 239-272 (275)
No 1
>1vtn_C HNF-3/FORK head DNA-recognition motif; protein-DNA complex, double helix, transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens} PDB: 1d5v_A
Probab=100.00 E-value=4.4e-46 Score=301.44 Aligned_cols=101 Identities=63% Similarity=1.154 Sum_probs=97.9
Q ss_pred CCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCcccCCCccccccccccccccccccccCCCCCCCCceeEEeC
Q psy9499 122 IVKPPYSYIALITMAILQSPHKKLTLSGICEFIMSRFPYYREKFPAWQNSIRHNLSLNDCFVKIPREPGNPGKGNYWTLD 201 (289)
Q Consensus 122 ~~KPPySYa~LI~~AI~sSp~k~LTL~eIY~~I~~~fPyyr~~~~gWqNSIRHNLSlNkcF~Kvpr~~~~pGKG~~Wtld 201 (289)
++||||||++||+|||+++|+++|||+|||+||+++||||+.+..|||||||||||||+||+||++..+++|||+||+|+
T Consensus 1 h~KPp~SY~~LI~~AI~~sp~~~LtL~eIY~~I~~~fpyyr~~~~gWqNSIRHNLSln~~F~kv~r~~~~~GKG~~W~l~ 80 (102)
T 1vtn_C 1 HAKPPYSYISLITMAIQQAPGKMLTLSEIYQWIMDLFPYYRENQQRWQNSIRHSLSFNDCFVKVARSPDKPGKGSYWALH 80 (102)
T ss_dssp CCCCSSCHHHHHHHHHHTSTTSCBCHHHHHHHHHHHCGGGGSCHHHHHHHHHHHHHHCTTEEEECCCSCSSCSSCEEEEC
T ss_pred CcCcCCCHHHHHHHHHHhCCCCCCcHHHHHHHHHHcCCccccCCCchhhhhhhhhhhccceEecCCCCCCCCCcceEEEC
Confidence 47999999999999999999999999999999999999999999999999999999999999999998999999999999
Q ss_pred CCchhcccCccchhcccccCC
Q psy9499 202 PMAEDMFDNGSFLRRRKRYKR 222 (289)
Q Consensus 202 P~~e~~f~~g~~~RrRkr~kr 222 (289)
|+++++|++|.|+|||+|+|+
T Consensus 81 p~~~~~f~~g~~~rr~~~~~~ 101 (102)
T 1vtn_C 81 PSSGNMFENGCYLRRQKRFKL 101 (102)
T ss_dssp GGGCSTTCSSCSSSCSSCCCC
T ss_pred cCHHHHhhcCCeecccccccc
Confidence 999999999999999998875
No 2
>2hdc_A Protein (transcription factor); structure, dyanamics, genesis, winged helix protein, protein/DNA complex; HET: DNA; NMR {Rattus norvegicus} SCOP: a.4.5.14
Probab=100.00 E-value=5e-46 Score=298.70 Aligned_cols=97 Identities=95% Similarity=1.596 Sum_probs=94.3
Q ss_pred CCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCcccCCCccccccccccccccccccccCCCCCCCCceeEEeCC
Q psy9499 123 VKPPYSYIALITMAILQSPHKKLTLSGICEFIMSRFPYYREKFPAWQNSIRHNLSLNDCFVKIPREPGNPGKGNYWTLDP 202 (289)
Q Consensus 123 ~KPPySYa~LI~~AI~sSp~k~LTL~eIY~~I~~~fPyyr~~~~gWqNSIRHNLSlNkcF~Kvpr~~~~pGKG~~WtldP 202 (289)
+||||||++||+|||+++|+++|||+|||+||+++||||+.+..|||||||||||||+||+||+|+.+++|||+||+|||
T Consensus 1 ~KPp~SY~~LI~~AI~~sp~~~ltL~eIY~~i~~~fpyyr~~~~gWqNSIRHNLSln~~F~Kv~r~~~~~gKg~~W~l~p 80 (97)
T 2hdc_A 1 VKPPYSYIALITMAILQSPQKKLTLSGICEFISNRFPYYREKFPAWQNSIRHNLSLNDCFVKIPREPGNPGKGNYWTLDP 80 (97)
T ss_dssp CCCCCCHHHHHHHHHHTCTTTCBCHHHHHHHHHHHCHHHHHHCSSHHHHHHHHHHHHHCCEEECSCTTCSSSCCEEECCT
T ss_pred CcCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHhchhhccCCcceehhhhhhhhhhhheeecCCCCCCCCCcceEEECc
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhcccCccchhcccc
Q psy9499 203 MAEDMFDNGSFLRRRKR 219 (289)
Q Consensus 203 ~~e~~f~~g~~~RrRkr 219 (289)
+++++|++|.|+|||+|
T Consensus 81 ~~~~~f~~g~~~rrr~r 97 (97)
T 2hdc_A 81 QSEDMFDNGSFLRRRKR 97 (97)
T ss_dssp THHHHHHHSCCCSSSCC
T ss_pred CHHHHHhCCCccCCCCC
Confidence 99999999999888875
No 3
>2hfh_A Genesis, HFH-2; HNF-3 homologues, winged helix protein; NMR {Rattus norvegicus} SCOP: a.4.5.14
Probab=100.00 E-value=1.6e-45 Score=301.34 Aligned_cols=103 Identities=91% Similarity=1.548 Sum_probs=91.3
Q ss_pred CCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCcccCCCccccccccccccccccccccCCCCCCCCceeEEeC
Q psy9499 122 IVKPPYSYIALITMAILQSPHKKLTLSGICEFIMSRFPYYREKFPAWQNSIRHNLSLNDCFVKIPREPGNPGKGNYWTLD 201 (289)
Q Consensus 122 ~~KPPySYa~LI~~AI~sSp~k~LTL~eIY~~I~~~fPyyr~~~~gWqNSIRHNLSlNkcF~Kvpr~~~~pGKG~~Wtld 201 (289)
.+||||||++||+|||+++|+++|||+|||+||+++||||+.+..|||||||||||||+||+||+|+.+++|||+||+||
T Consensus 1 ~~KPp~SYa~LI~~AI~~sp~~~LtL~eIY~~I~~~fPyyr~~~~gWqNSIRHNLSln~~F~Kv~r~~~~~GKG~~W~l~ 80 (109)
T 2hfh_A 1 MVKPPYSYIALITMAILQSPQKKLTLSGICEFISNRFPYYREKFPAWQNSIRHNLSLNDCFVKIPREPGNPGKGNYWTLD 80 (109)
T ss_dssp CCCCCCCHHHHHHHHHHTCSSSCBCHHHHHHHHHTTCHHHHTTCGGGHHHHHHHHHHHTCCBCCTTCTTSCSSCCCBBCC
T ss_pred CCCCCCCHHHHHHHHHHhCCCCCCcHHHHHHHHHHhcchhccCCcccchhhhhhhhhhhhhhcCCCCCCCCCCceeEEEC
Confidence 37999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchhcccCccchhcccccCCCC
Q psy9499 202 PMAEDMFDNGSFLRRRKRYKRTP 224 (289)
Q Consensus 202 P~~e~~f~~g~~~RrRkr~kr~~ 224 (289)
|+++++|++|.|+|||+++++-+
T Consensus 81 p~~~~~f~~g~~~Rrr~~~~~~~ 103 (109)
T 2hfh_A 81 PQSEDMFDNGSFLRRRKRFKRLQ 103 (109)
T ss_dssp TTCCHHHHSSSCC----------
T ss_pred ccHHHHHhCCCcccCcccccccc
Confidence 99999999999999998876643
No 4
>1kq8_A HFH-1, hepatocyte nuclear factor 3 forkhead homolog 1, winged; winged helix protein, structure, transcription; NMR {Rattus norvegicus} SCOP: a.4.5.14
Probab=100.00 E-value=2.3e-45 Score=296.25 Aligned_cols=98 Identities=58% Similarity=1.091 Sum_probs=73.1
Q ss_pred CCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCcccCCCccccccccccccccccccccCCCCCC-CCceeEEeC
Q psy9499 123 VKPPYSYIALITMAILQSPHKKLTLSGICEFIMSRFPYYREKFPAWQNSIRHNLSLNDCFVKIPREPGNP-GKGNYWTLD 201 (289)
Q Consensus 123 ~KPPySYa~LI~~AI~sSp~k~LTL~eIY~~I~~~fPyyr~~~~gWqNSIRHNLSlNkcF~Kvpr~~~~p-GKG~~Wtld 201 (289)
+||||||++||+|||+++|+++|||+|||+||+++||||+.+..|||||||||||||+||+||+++.+++ |||+||+||
T Consensus 1 ~KPp~SY~~LI~~AI~~sp~~~ltL~eIY~~i~~~fpyyr~~~~gWqNSIRHNLSln~~F~kv~r~~~~p~gkg~~W~l~ 80 (100)
T 1kq8_A 1 PKPPYSYIALITMAIRDSAGGRLTLAEINEYLMGKFPFFRGSYTGWRNSVRHNLSLNDCFVKVLRDPSRPWGKDNYWMLN 80 (100)
T ss_dssp ------CHHHHHHHHTTSSSSCBCHHHHHHHHHHHCTTGGGTCSCCHHHHHHHHHHHTCCEECSSCSCCSSSCCCCEECC
T ss_pred CcCCCCHHHHHHHHHHhCCCCCCcHHHHHHHHHHhCccccCCCCceecccchheehhheeeecCCCCCCCCCCCeEEEEC
Confidence 5999999999999999999999999999999999999999999999999999999999999999998888 999999999
Q ss_pred CCchhcccCccchhccccc
Q psy9499 202 PMAEDMFDNGSFLRRRKRY 220 (289)
Q Consensus 202 P~~e~~f~~g~~~RrRkr~ 220 (289)
|+++++|++|.|+|||+|+
T Consensus 81 p~~~~~f~~g~~~rrr~r~ 99 (100)
T 1kq8_A 81 PNSEYTFADGVFRRRRYRL 99 (100)
T ss_dssp C------------------
T ss_pred cCHHHHHhCCCcccCCCCC
Confidence 9999999999999988874
No 5
>2c6y_A Forkhead box protein K2; transcription regulation, DNA-binding domain, forkhead transcription factors, interleukin enhancer binding factor; 2.4A {Homo sapiens} SCOP: a.4.5.14 PDB: 1jxs_A 2a3s_A 2d2w_A
Probab=100.00 E-value=1.1e-44 Score=297.28 Aligned_cols=102 Identities=51% Similarity=0.934 Sum_probs=95.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCcccCCCccccccccccccccccccccCCCCCCCCcee
Q psy9499 118 GKNSIVKPPYSYIALITMAILQSPHKKLTLSGICEFIMSRFPYYREKFPAWQNSIRHNLSLNDCFVKIPREPGNPGKGNY 197 (289)
Q Consensus 118 ~~~~~~KPPySYa~LI~~AI~sSp~k~LTL~eIY~~I~~~fPyyr~~~~gWqNSIRHNLSlNkcF~Kvpr~~~~pGKG~~ 197 (289)
+.....||||||++||+|||+++|+++|||+|||+||+++||||+.+..|||||||||||||+||+||+|..+++|||+|
T Consensus 10 ~~~~~~KPp~SYa~LI~~AI~~sp~~~LtL~eIY~~I~~~fPyyr~~~~gWqNSIRHNLSln~~F~Kv~r~~~~~GKG~~ 89 (111)
T 2c6y_A 10 GRGSDSKPPYSYAQLIVQAITMAPDKQLTLNGIYTHITKNYPYYRTADKGWQNSIRHNLSLNRYFIKVPRSQEEPGKGSF 89 (111)
T ss_dssp ----CCCCSSCHHHHHHHHHHTSTTSCEEHHHHHHHHHHHCTTSCTTCHHHHHHHHHHHHHSTTEEEECCCTTSCCSSCE
T ss_pred CCCCCCCCCCCHHHHHHHHHHhCCCCCCcHHHHHHHHHHcCCccccCCCeeecchhHHhhhhhhhccccCCCCCCCCcce
Confidence 44567999999999999999999999999999999999999999999999999999999999999999999889999999
Q ss_pred EEeCCCchhcccCccchhcccc
Q psy9499 198 WTLDPMAEDMFDNGSFLRRRKR 219 (289)
Q Consensus 198 WtldP~~e~~f~~g~~~RrRkr 219 (289)
|+|||+++++|+++.|+|||+|
T Consensus 90 W~l~p~~~~~~~~~~~r~rr~r 111 (111)
T 2c6y_A 90 WRIDPASESKLIEQAFRKRRPR 111 (111)
T ss_dssp EEECHHHHHHHHHHHTCCCCCC
T ss_pred EEeChhHHHhhhcccccccCCC
Confidence 9999999999999999888764
No 6
>3l2c_A Forkhead box protein O4; winged helix, transcription-DNA COMP; 1.87A {Homo sapiens} SCOP: a.4.5.14 PDB: 3co6_C*
Probab=100.00 E-value=7.1e-39 Score=262.29 Aligned_cols=88 Identities=40% Similarity=0.736 Sum_probs=76.2
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCcccC-----CCccccccccccccccccccccCCCCC
Q psy9499 117 DGKNSIVKPPYSYIALITMAILQSPHKKLTLSGICEFIMSRFPYYREK-----FPAWQNSIRHNLSLNDCFVKIPREPGN 191 (289)
Q Consensus 117 ~~~~~~~KPPySYa~LI~~AI~sSp~k~LTL~eIY~~I~~~fPyyr~~-----~~gWqNSIRHNLSlNkcF~Kvpr~~~~ 191 (289)
.......||||||++||+|||+++|+++|||+|||+||+++||||+.+ ..|||||||||||||+||+||+++ +
T Consensus 17 ~~~~~~~kPpySY~~LI~~AI~~sp~~~LtL~eIY~~I~~~fPyyr~~~~~~s~~gWqNSIRHNLSln~~F~Kv~r~--~ 94 (110)
T 3l2c_A 17 GGSRRNAWGNQSYAELISQAIESAPEKRLTLAQIYEWMVRTVPYFKDKGDSNSSAGWKNSIRHNLSLHSKFIKVHNE--A 94 (110)
T ss_dssp ---CCBTTBSCCHHHHHHHHHHHSTTSCBCHHHHHHHHHHHCGGGTTCTTCCTTSHHHHHHHHHHHHCTTEEEECCC--S
T ss_pred CccCCCCCCCCCHHHHHHHHHHhCCccCcCHHHHHHHHHHhCchhhcCccccCCCCcccchhhhccHhhhheeCCCC--C
Confidence 345567999999999999999999999999999999999999999986 469999999999999999999985 7
Q ss_pred CCCceeEEeCCCchh
Q psy9499 192 PGKGNYWTLDPMAED 206 (289)
Q Consensus 192 pGKG~~WtldP~~e~ 206 (289)
+|||+||+|||++++
T Consensus 95 ~GKG~~W~l~p~~~~ 109 (110)
T 3l2c_A 95 TGKSSWWMLNPEGGK 109 (110)
T ss_dssp TTCCCEEEEC-----
T ss_pred CCCCceEEECccccC
Confidence 899999999999864
No 7
>3coa_C Forkhead box protein O1; winged helix, forkhead domain, chromosomal rearrangement; HET: DNA; 2.20A {Homo sapiens} PDB: 3co7_C* 2k86_A 2uzk_A
Probab=100.00 E-value=1e-38 Score=263.96 Aligned_cols=86 Identities=41% Similarity=0.711 Sum_probs=77.3
Q ss_pred CCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCcccCC-----CccccccccccccccccccccCCCCCC
Q psy9499 118 GKNSIVKPPYSYIALITMAILQSPHKKLTLSGICEFIMSRFPYYREKF-----PAWQNSIRHNLSLNDCFVKIPREPGNP 192 (289)
Q Consensus 118 ~~~~~~KPPySYa~LI~~AI~sSp~k~LTL~eIY~~I~~~fPyyr~~~-----~gWqNSIRHNLSlNkcF~Kvpr~~~~p 192 (289)
......||||||++||+|||+++|+++|||+|||+||+++||||+.+. .|||||||||||||+||+||+++ ++
T Consensus 5 ~s~~n~kPp~SYa~LI~~AI~~sp~~~LTL~eIY~~I~~~fPyyr~~~d~~s~~gWqNSIRHNLSln~~F~Kv~~~--~~ 82 (117)
T 3coa_C 5 SSRRNAWGNLSYADLITKAIESSAEKRLTLSQIYEWMVKSVPYFKDKGDSNSSAGWKNSIRHNLSLHSKFIRVQNE--GT 82 (117)
T ss_dssp --CCBTTBSCCHHHHHHHHHHTSTTSCBCHHHHHHHHHHHCGGGTTCCSHHHHHHHHHHHHHHHHHCTTEEEECCS--ST
T ss_pred cCCCCCCCCCCHHHHHHHHHHhCCCCCccHHHHHHHHHHhCcccccCCCCcccccchhccchheecchhhcccccC--CC
Confidence 345678999999999999999999999999999999999999999875 79999999999999999999985 68
Q ss_pred CCceeEEeCCCch
Q psy9499 193 GKGNYWTLDPMAE 205 (289)
Q Consensus 193 GKG~~WtldP~~e 205 (289)
|||+||+|||++.
T Consensus 83 GKg~~W~l~p~~~ 95 (117)
T 3coa_C 83 GKSSWWMLNPEGG 95 (117)
T ss_dssp TCCCEEEECC---
T ss_pred CCcceEEECcccc
Confidence 9999999999874
No 8
>3bpy_A FORK head domain, forkhead transcription factor FOXO4, DNA binding domain; forkhead BOX, winged helix; 1.87A {Homo sapiens}
Probab=100.00 E-value=2.3e-38 Score=248.71 Aligned_cols=78 Identities=42% Similarity=0.776 Sum_probs=74.2
Q ss_pred CCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCcccC-----CCccccccccccccccccccccCCCCCCCCce
Q psy9499 122 IVKPPYSYIALITMAILQSPHKKLTLSGICEFIMSRFPYYREK-----FPAWQNSIRHNLSLNDCFVKIPREPGNPGKGN 196 (289)
Q Consensus 122 ~~KPPySYa~LI~~AI~sSp~k~LTL~eIY~~I~~~fPyyr~~-----~~gWqNSIRHNLSlNkcF~Kvpr~~~~pGKG~ 196 (289)
..||||||++||+|||+++|+++|||+|||+||+++||||+.+ ..|||||||||||||+||+||+++ ++|||+
T Consensus 3 n~kp~~SY~~LI~~Ai~~sp~~~ltL~eIY~~i~~~fpyy~~~~~~~s~~gWqNSIRHNLSln~~F~Kv~r~--~~GKg~ 80 (85)
T 3bpy_A 3 NAWGNQSYAELISQAIESAPEKRLTLAQIYEWMVRTVPYFKDKGDSNSSAGWKNSIRHNLSLHSKFIKVHNE--ATGKSS 80 (85)
T ss_dssp BTTBSCCHHHHHHHHHHHSTTSCBCHHHHHHHHHHHCGGGTTCTTCCTTSHHHHHHHHHHHHCTTEEEECCC--STTCCC
T ss_pred CCcCCCCHHHHHHHHHHhCCcCCccHHHHHHHHHHhCcchhcCccCccCCCcchhhhhhccHhhhheeCCCC--CCCCCC
Confidence 5899999999999999999999999999999999999999986 469999999999999999999985 789999
Q ss_pred eEEeC
Q psy9499 197 YWTLD 201 (289)
Q Consensus 197 ~Wtld 201 (289)
||+||
T Consensus 81 ~W~ld 85 (85)
T 3bpy_A 81 WWMLN 85 (85)
T ss_dssp EEEEC
T ss_pred ceecC
Confidence 99997
No 9
>2a07_F Forkhead box protein P2; double-helix, swapping, homodimer, monomer, winged-helix, magnesium, transcription/DNA complex; 1.90A {Homo sapiens} SCOP: a.4.5.14 PDB: 2as5_F 2kiu_A 3qrf_F
Probab=100.00 E-value=6.3e-39 Score=255.87 Aligned_cols=87 Identities=39% Similarity=0.854 Sum_probs=76.7
Q ss_pred CCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCcccCCCccccccccccccccccccccCCCCCCCCceeEEeCC
Q psy9499 123 VKPPYSYIALITMAILQSPHKKLTLSGICEFIMSRFPYYREKFPAWQNSIRHNLSLNDCFVKIPREPGNPGKGNYWTLDP 202 (289)
Q Consensus 123 ~KPPySYa~LI~~AI~sSp~k~LTL~eIY~~I~~~fPyyr~~~~gWqNSIRHNLSlNkcF~Kvpr~~~~pGKG~~WtldP 202 (289)
+||||||++||+|||+++|+++|||+|||+||+++||||+.+..|||||||||||||+||+||++ |||+||+|||
T Consensus 2 ~KPp~SY~~LI~~AI~~sp~~~ltL~eIY~~i~~~fpyyr~~~~gWkNSIRHNLSln~~F~kv~~-----gkG~~W~l~~ 76 (93)
T 2a07_F 2 VRPPFTYATLIRQAIMESSDRQLTLNEIYSWFTRTFAYFRRNAATWKNAVRHNLSLHKCFVRVEN-----VKGAVWTVDE 76 (93)
T ss_dssp CCCSCCHHHHHHHHHHHSTTSCBCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCTTBCCEEC-----SSSEECCBCH
T ss_pred CCCCCCHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCccccCCCccccccceeeehhhceeecCC-----CCCCeeEECh
Confidence 79999999999999999999999999999999999999999999999999999999999999974 7999999997
Q ss_pred CchhcccCccchhcccccCC
Q psy9499 203 MAEDMFDNGSFLRRRKRYKR 222 (289)
Q Consensus 203 ~~e~~f~~g~~~RrRkr~kr 222 (289)
+ .+.+||.+...
T Consensus 77 ~--------~~~k~r~~~~~ 88 (93)
T 2a07_F 77 V--------EYQKRRSQKIT 88 (93)
T ss_dssp H--------HHHHHC-----
T ss_pred H--------Hhhcccccccc
Confidence 4 35555544433
No 10
>1e17_A AFX; DNA binding domain, winged helix; NMR {Homo sapiens} SCOP: a.4.5.14
Probab=100.00 E-value=3.4e-38 Score=270.42 Aligned_cols=98 Identities=39% Similarity=0.718 Sum_probs=79.9
Q ss_pred ccCCCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCcccC-----CCccccccccccccccccccccCCC
Q psy9499 115 KQDGKNSIVKPPYSYIALITMAILQSPHKKLTLSGICEFIMSRFPYYREK-----FPAWQNSIRHNLSLNDCFVKIPREP 189 (289)
Q Consensus 115 ~~~~~~~~~KPPySYa~LI~~AI~sSp~k~LTL~eIY~~I~~~fPyyr~~-----~~gWqNSIRHNLSlNkcF~Kvpr~~ 189 (289)
++.......||||||++||+|||+++|+++|||+|||+||+++||||+++ ..|||||||||||||+||+||++
T Consensus 31 ~~~~~~rn~kPp~SYa~LI~~AI~sSp~k~LTL~eIY~wI~~~fPYfr~~~d~~s~~gWqNSIRHNLSLnk~F~Kv~r-- 108 (150)
T 1e17_A 31 RKGGSRRNAWGNQSYAELISQAIESAPEKRLTLAQIYEWMVRTVPYFKDKGDSNSSAGWKNSIRHNLSLHSKFIKVHN-- 108 (150)
T ss_dssp ----CCCCTTCSCCHHHHHHHHHHHSSSCCEEHHHHHHHHHHHCGGGHHHHTSTTHHHHHHHHHHHHHSSTTEEEECC--
T ss_pred ccCCCCCCCCCCCCHHHHHHHHHHhCCCCCccHHHHHHHHHHhCchhccCCCCccccchhhccceeeeeeeeeEecCC--
Confidence 44556677999999999999999999999999999999999999999976 37999999999999999999999
Q ss_pred CCCCCceeEEeCCCchhcccCccchhcc
Q psy9499 190 GNPGKGNYWTLDPMAEDMFDNGSFLRRR 217 (289)
Q Consensus 190 ~~pGKG~~WtldP~~e~~f~~g~~~RrR 217 (289)
+++|||+||+|||+++ ..|.+.|||
T Consensus 109 ~~~GKG~~W~ldp~~~---~~gk~~Rrr 133 (150)
T 1e17_A 109 EATGKSSWWMLNPEGG---KSGKAPRRR 133 (150)
T ss_dssp TTTSSSCEEEECTTCC------------
T ss_pred CCCCCcceEEECcccc---cCCcccccc
Confidence 4789999999999874 244444444
No 11
>3g73_A Forkhead box protein M1; DNA-binding domain, forkhead transcription factors, FOXM1, W helix; HET: DNA; 2.21A {Homo sapiens}
Probab=100.00 E-value=4e-37 Score=261.84 Aligned_cols=96 Identities=40% Similarity=0.757 Sum_probs=81.2
Q ss_pred CCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCccc-CCCccccccccccccccccccccCCCCCCCCcee
Q psy9499 119 KNSIVKPPYSYIALITMAILQSPHKKLTLSGICEFIMSRFPYYRE-KFPAWQNSIRHNLSLNDCFVKIPREPGNPGKGNY 197 (289)
Q Consensus 119 ~~~~~KPPySYa~LI~~AI~sSp~k~LTL~eIY~~I~~~fPyyr~-~~~gWqNSIRHNLSlNkcF~Kvpr~~~~pGKG~~ 197 (289)
....+||||||++||+|||+++++++|||+|||+||+++||||+. +..|||||||||||||+||+|+. +++|||+|
T Consensus 13 ~~~~~KPpySYa~LI~~AI~~sp~~~LTL~eIY~~I~~~fPyyr~~~~~gWqNSIRHNLSln~~F~r~~---~~~GKg~~ 89 (142)
T 3g73_A 13 NSVSERPPYSYMAMIQFAINSTERKRMTLKDIYTWIEDHFPYFKHIAKPGWKNSIRHNLSLHDMFVRET---SANGKVSF 89 (142)
T ss_dssp -CTTSCCSSCHHHHHHHHHHTSTTSEECHHHHHHHHHHHCTHHHHTSCTTHHHHHHHHHHHCTTEEEEE---CTTSCCEE
T ss_pred ccCCCCCCCCHHHHHHHHHHhCCCCCcCHHHHHHHHHHhCCCccccCCCCccchhhhhhhhhhhheecC---CCCCCCce
Confidence 455689999999999999999999999999999999999999998 88999999999999999999864 46899999
Q ss_pred EEeCCCchhcc-cCccchhcc
Q psy9499 198 WTLDPMAEDMF-DNGSFLRRR 217 (289)
Q Consensus 198 WtldP~~e~~f-~~g~~~RrR 217 (289)
|+|||+++..+ .++.|++.+
T Consensus 90 W~i~p~~~~~l~~d~~~k~~~ 110 (142)
T 3g73_A 90 WTIHPSANRYLTLDQVFKPLD 110 (142)
T ss_dssp EEECTTTCCCCCCC-------
T ss_pred EEECccccccchhhhhhcccc
Confidence 99999997654 555555444
No 12
>1uss_A Histone H1; DNA binding protein, linker histone, DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: a.4.5.13 PDB: 1yqa_A
Probab=87.97 E-value=0.55 Score=36.21 Aligned_cols=32 Identities=16% Similarity=0.218 Sum_probs=28.0
Q ss_pred CHHHHHHHHHhcCC-CCCCCHHHHHHHHHhcCC
Q psy9499 128 SYIALITMAILQSP-HKKLTLSGICEFIMSRFP 159 (289)
Q Consensus 128 SYa~LI~~AI~sSp-~k~LTL~eIY~~I~~~fP 159 (289)
+|..||..||.... .+..+++-|..||+.+|.
T Consensus 9 ~y~~MI~eAI~alker~GsS~~AIkKyI~~~y~ 41 (88)
T 1uss_A 9 TYKEMILKSMPQLNDGKGSSRIVLKKYVKDTFS 41 (88)
T ss_dssp CHHHHHHHHHHHSCCTTSBCHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHhccCCCcCHHHHHHHHHHhCC
Confidence 69999999999744 458899999999999976
No 13
>1uhm_A Histone H1, histone HHO1P; winged helix-turn-helix, linker histone, riken structural genomics/proteomics initiative, RSGI; NMR {Saccharomyces cerevisiae} SCOP: a.4.5.13
Probab=87.90 E-value=0.44 Score=35.79 Aligned_cols=33 Identities=24% Similarity=0.390 Sum_probs=28.6
Q ss_pred CHHHHHHHHHhc-CCCCCCCHHHHHHHHHhcCCC
Q psy9499 128 SYIALITMAILQ-SPHKKLTLSGICEFIMSRFPY 160 (289)
Q Consensus 128 SYa~LI~~AI~s-Sp~k~LTL~eIY~~I~~~fPy 160 (289)
+|..||..||.. ...+..+++.|-.||+.+|+.
T Consensus 6 ~y~~MI~eAI~~lker~GsS~~AIkKyI~~~y~~ 39 (78)
T 1uhm_A 6 SYRELIIEGLTALKERKGSSRPALKKFIKENYPI 39 (78)
T ss_dssp CHHHHHHHHHHHHCCSSCEEHHHHHHHHHTTSCT
T ss_pred CHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCCC
Confidence 699999999997 455678999999999999763
No 14
>1hst_A Histone H5; chromosomal protein; 2.60A {Gallus gallus} SCOP: a.4.5.13
Probab=85.80 E-value=0.7 Score=35.87 Aligned_cols=32 Identities=22% Similarity=0.324 Sum_probs=28.1
Q ss_pred CHHHHHHHHHhcCCC-CCCCHHHHHHHHHhcCC
Q psy9499 128 SYIALITMAILQSPH-KKLTLSGICEFIMSRFP 159 (289)
Q Consensus 128 SYa~LI~~AI~sSp~-k~LTL~eIY~~I~~~fP 159 (289)
+|..||..||....+ +..+++-|-.||+.+|.
T Consensus 9 ~y~~MI~eAI~~lker~GsS~~AI~KyI~~~y~ 41 (90)
T 1hst_A 9 TYSEMIAAAIRAEKSRGGSSRQSIQKYIKSHYK 41 (90)
T ss_dssp CHHHHHHHHHHTCCCSSCEEHHHHHHHHHHHSC
T ss_pred CHHHHHHHHHHHhccCCCCCHHHHHHHHHHHcc
Confidence 699999999998544 57899999999999976
No 15
>2rqp_A Heterochromatin protein 1-binding protein 3; histone H1, alternative splicing, chromosomal protein, DNA-binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=84.52 E-value=0.47 Score=36.42 Aligned_cols=34 Identities=21% Similarity=0.343 Sum_probs=29.0
Q ss_pred CHHHHHHHHHhc-CCCCCCCHHHHHHHHHhcCCCc
Q psy9499 128 SYIALITMAILQ-SPHKKLTLSGICEFIMSRFPYY 161 (289)
Q Consensus 128 SYa~LI~~AI~s-Sp~k~LTL~eIY~~I~~~fPyy 161 (289)
+|..||.+||.. ...+.-+++.|..||+.+|+-+
T Consensus 11 ~y~~MI~eAI~~Lker~GsS~~AI~KyI~~~y~~~ 45 (88)
T 2rqp_A 11 KMDAILTEAIKACFQKSGASVVAIRKYIIHKYPSL 45 (88)
T ss_dssp CHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHCSTH
T ss_pred CHHHHHHHHHHHhccCCCcCHHHHHHHHHHhCCCC
Confidence 699999999997 3446789999999999999843
No 16
>1ust_A Histone H1; DNA binding protein, linker histone, DNA binding domain, winged helix fold; NMR {Saccharomyces cerevisiae} SCOP: a.4.5.13
Probab=83.85 E-value=0.74 Score=35.96 Aligned_cols=32 Identities=25% Similarity=0.386 Sum_probs=28.0
Q ss_pred CHHHHHHHHHhcCC-CCCCCHHHHHHHHHhcCC
Q psy9499 128 SYIALITMAILQSP-HKKLTLSGICEFIMSRFP 159 (289)
Q Consensus 128 SYa~LI~~AI~sSp-~k~LTL~eIY~~I~~~fP 159 (289)
+|..||..||.... .+..+++-|-.||+.+|.
T Consensus 9 ~y~~MI~eAI~alker~GsS~~AIkKyI~~~y~ 41 (93)
T 1ust_A 9 SYRELIIEGLTALKERKGSSRPALKKFIKENYP 41 (93)
T ss_dssp CHHHHHHHHHTTTTTTSCEEHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHHcccCCCcCHHHHHHHHHHHCC
Confidence 69999999999844 458899999999999976
No 17
>2lso_A Histone H1X; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, nuclear protein; NMR {Homo sapiens}
Probab=71.97 E-value=1 Score=34.45 Aligned_cols=34 Identities=18% Similarity=0.063 Sum_probs=27.9
Q ss_pred CCCHHHHHHHHHhcC-CCCCCCHHHHHHHHHhcCC
Q psy9499 126 PYSYIALITMAILQS-PHKKLTLSGICEFIMSRFP 159 (289)
Q Consensus 126 PySYa~LI~~AI~sS-p~k~LTL~eIY~~I~~~fP 159 (289)
|-+|..||..||..- ..+.-+++-|..+|+.++.
T Consensus 5 ~~~y~~MI~eAI~aLker~GSS~~AI~K~i~~~~~ 39 (83)
T 2lso_A 5 PGKYSQLVVETIRRLGERNGSSLAKIYTEAKKVPW 39 (83)
Confidence 348999999999974 4457889999999998874
No 18
>1ghc_A GH1; chromosomal protein; NMR {Gallus gallus} SCOP: a.4.5.13
Probab=46.52 E-value=2.7 Score=30.85 Aligned_cols=30 Identities=30% Similarity=0.328 Sum_probs=25.9
Q ss_pred CHHHHHHHHHhcC-CCCCCCHHHHHHHHHhc
Q psy9499 128 SYIALITMAILQS-PHKKLTLSGICEFIMSR 157 (289)
Q Consensus 128 SYa~LI~~AI~sS-p~k~LTL~eIY~~I~~~ 157 (289)
+|..||..||... ..+..+++-|..||+.+
T Consensus 5 ~y~~mI~~AI~alker~GsS~~AI~Kyi~~~ 35 (75)
T 1ghc_A 5 SVTELITKAVSASKERKGLSLAALKKALAAG 35 (75)
T ss_dssp SHHHHHHHHHHHCSSSSCCTTSSGGGSSSSS
T ss_pred CHHHHHHHHHHHhccCCcccHHHHHHHHHHc
Confidence 5899999999985 44678999999999998
No 19
>2kpm_A Uncharacterized protein; methods development, structural genomics, PSI-2, protein structure initiative; NMR {Nitrosomonas europaea}
Probab=30.57 E-value=1.3e+02 Score=23.81 Aligned_cols=37 Identities=11% Similarity=0.105 Sum_probs=31.3
Q ss_pred CHHHHHHHHHhc--CCCCCCCHHHHHHHHHhcCCCcccC
Q psy9499 128 SYIALITMAILQ--SPHKKLTLSGICEFIMSRFPYYREK 164 (289)
Q Consensus 128 SYa~LI~~AI~s--Sp~k~LTL~eIY~~I~~~fPyyr~~ 164 (289)
.-..||..||.. ..++-..|.+|-++|.+++|-|...
T Consensus 21 ~l~~lL~~Ai~~~~dddGWa~Lg~vG~~L~k~~PdFDpR 59 (105)
T 2kpm_A 21 FPRKFVLAALEQSSDDAGWANLGNFGNYLNKLQPDFDSR 59 (105)
T ss_dssp CCHHHHHHHHHHTBCTTSCEEHHHHHHHHHHHCTTCCGG
T ss_pred HHHHHHHHHHHHhcCCcCcEeHHHHHHHHHHhCcCCCcc
Confidence 346899999986 4468899999999999999999654
No 20
>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...
Probab=26.53 E-value=18 Score=33.19 Aligned_cols=39 Identities=15% Similarity=0.399 Sum_probs=31.0
Q ss_pred HHHHHHHHHhcCCCCCCCHHHH--HHHHHhcCCCcccCCCcccc
Q psy9499 129 YIALITMAILQSPHKKLTLSGI--CEFIMSRFPYYREKFPAWQN 170 (289)
Q Consensus 129 Ya~LI~~AI~sSp~k~LTL~eI--Y~~I~~~fPyyr~~~~gWqN 170 (289)
-..||...|...|.+|+|..|+ +.||.+ .|||+.- .|++
T Consensus 261 ~~dli~~lL~~dp~~R~t~~e~~~~~~i~~-Hp~F~~i--dw~~ 301 (311)
T 4aw0_A 261 ARDLVEKLLVLDATKRLGCEEMEGYGPLKA-HPFFESV--TWEN 301 (311)
T ss_dssp HHHHHHHHSCSSGGGSTTSGGGTCHHHHHT-SGGGTTC--CCTT
T ss_pred HHHHHHHHccCCHhHCcChHHHcCCHHHHC-CCCcCCC--CHHH
Confidence 4579999999999999999998 577765 5999753 4763
No 21
>3rsn_A SET1/ASH2 histone methyltransferase complex subun; PHD domain, winged helix domain, binding, transcription; 2.10A {Homo sapiens} PDB: 3s32_A
Probab=24.65 E-value=35 Score=29.62 Aligned_cols=65 Identities=17% Similarity=0.267 Sum_probs=49.0
Q ss_pred CCCCCCCCHHHHHHHHHhc----------CCCCCCCHH-HHHHHHHhcCCCccc----CCCccccccccccccc-ccccc
Q psy9499 121 SIVKPPYSYIALITMAILQ----------SPHKKLTLS-GICEFIMSRFPYYRE----KFPAWQNSIRHNLSLN-DCFVK 184 (289)
Q Consensus 121 ~~~KPPySYa~LI~~AI~s----------Sp~k~LTL~-eIY~~I~~~fPyyr~----~~~gWqNSIRHNLSlN-kcF~K 184 (289)
...|=+.++..|+..||-+ ...+-..+. ||.-||.+++-..-. ....|++.|--.|+-+ ..|+.
T Consensus 63 ~f~R~~~~w~~v~~laLyNL~~~~~~~~~~~k~yF~~~~dIipfI~~nWe~L~~~~r~~k~~W~~ti~~aLs~~~~~F~~ 142 (177)
T 3rsn_A 63 YFLRKQANLKEMCLSALANLTWQSRTQDEHPKTMFSKDKDIIPFIDKYWECMTTRQRPGKMTWPNNIVKTMSKERDVFLV 142 (177)
T ss_dssp EEEECCCCHHHHHHHHHHHHHHHHHHHCSSCCSCEETTTTHHHHHHHTGGGTCCCCCCSCCSGGGTHHHHHHTCTTTEEE
T ss_pred eeEeccCCHHHHHHHHHHhhhhhhhhcccCccccccccchHHHHHHHHHHHhcCCCccccccHHHHHHHHHhcCCceEEe
Confidence 3456678899998888766 244555666 999999999998853 3468999999999954 47765
Q ss_pred c
Q psy9499 185 I 185 (289)
Q Consensus 185 v 185 (289)
-
T Consensus 143 ~ 143 (177)
T 3rsn_A 143 K 143 (177)
T ss_dssp E
T ss_pred c
Confidence 3
No 22
>2kzv_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; NMR {Chromobacterium violaceum}
Probab=23.31 E-value=1.5e+02 Score=22.78 Aligned_cols=41 Identities=15% Similarity=0.112 Sum_probs=33.4
Q ss_pred CCHHHHHHHHHhc--CCCCCCCHHHHHHHHHhcCCCcccCCCc
Q psy9499 127 YSYIALITMAILQ--SPHKKLTLSGICEFIMSRFPYYREKFPA 167 (289)
Q Consensus 127 ySYa~LI~~AI~s--Sp~k~LTL~eIY~~I~~~fPyyr~~~~g 167 (289)
-.-..||..||.. ..++-..|.+|-++|.+++|-|....=|
T Consensus 7 ~~l~~ll~~Ai~~~~dedGWa~Lg~vG~~i~k~~PdFD~RnYG 49 (92)
T 2kzv_A 7 HPLQDMFTSAIEAVARDSGWAELSAVGSYLAKNDPSFDPRNWG 49 (92)
T ss_dssp SSHHHHHHHHHHHHTTTTSSCBHHHHHHHHHHHCTTCCTTTTC
T ss_pred HHHHHHHHHHHHHhcCCCCcEeHHHHHHHHHHhCcCCCccccC
Confidence 3567899999985 4577899999999999999999765444
No 23
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=21.53 E-value=91 Score=24.52 Aligned_cols=30 Identities=7% Similarity=0.071 Sum_probs=22.7
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHhcCCC
Q psy9499 131 ALITMAILQSPHKKLTLSGICEFIMSRFPY 160 (289)
Q Consensus 131 ~LI~~AI~sSp~k~LTL~eIY~~I~~~fPy 160 (289)
..|..+|.++.++-+|..|||+.+.+.+|-
T Consensus 21 ~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~ 50 (136)
T 1mzb_A 21 VKILQMLDSAEQRHMSAEDVYKALMEAGED 50 (136)
T ss_dssp HHHHHHHHCC-CCSBCHHHHHHHHHHTTCC
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHhhCCC
Confidence 356666766654789999999999998873
No 24
>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A
Probab=20.30 E-value=47 Score=29.54 Aligned_cols=32 Identities=16% Similarity=0.388 Sum_probs=26.5
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHH--HHHhcCCC
Q psy9499 129 YIALITMAILQSPHKKLTLSGICE--FIMSRFPY 160 (289)
Q Consensus 129 Ya~LI~~AI~sSp~k~LTL~eIY~--~I~~~fPy 160 (289)
-..||...|.-.|++|+|..||.+ ||+..+|-
T Consensus 239 ~~~li~~~L~~dP~~R~s~~eil~hpw~k~~~p~ 272 (275)
T 3hyh_A 239 AAGLIKRMLIVNPLNRISIHEIMQDDWFKVDLPE 272 (275)
T ss_dssp HHHHHHHHSCSSGGGSCCHHHHHHCHHHHTTCCG
T ss_pred HHHHHHHHccCChhHCcCHHHHHcCcccccCCCh
Confidence 567999999999999999999976 66666653
Done!