RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy9499
(289 letters)
>gnl|CDD|189470 pfam00250, Fork_head, Fork head domain.
Length = 96
Score = 191 bits (488), Expect = 2e-62
Identities = 68/96 (70%), Positives = 79/96 (82%)
Query: 124 KPPYSYIALITMAILQSPHKKLTLSGICEFIMSRFPYYREKFPAWQNSIRHNLSLNDCFV 183
KPPYSYIALITMAI QSP K LTLS I ++IM FPYYR+ WQNSIRHNLSLN CF+
Sbjct: 1 KPPYSYIALITMAIQQSPEKMLTLSEIYQWIMDLFPYYRQNKQGWQNSIRHNLSLNKCFI 60
Query: 184 KIPREPGNPGKGNYWTLDPMAEDMFDNGSFLRRRKR 219
K+PR P PGKG+YWTLDP +E+MF+NG +L+RRKR
Sbjct: 61 KVPRSPDKPGKGSYWTLDPESENMFENGKYLKRRKR 96
>gnl|CDD|214627 smart00339, FH, FORKHEAD. FORKHEAD, also known as a "winged
helix".
Length = 89
Score = 168 bits (429), Expect = 1e-53
Identities = 65/89 (73%), Positives = 73/89 (82%)
Query: 124 KPPYSYIALITMAILQSPHKKLTLSGICEFIMSRFPYYREKFPAWQNSIRHNLSLNDCFV 183
KPPYSYIALI MAIL SP K+LTLS I ++I FPYYRE WQNSIRHNLSLNDCFV
Sbjct: 1 KPPYSYIALIAMAILSSPDKRLTLSEIYKWIEDNFPYYRENRAGWQNSIRHNLSLNDCFV 60
Query: 184 KIPREPGNPGKGNYWTLDPMAEDMFDNGS 212
K+PRE PGKG+YWTLDP AE+MF+NG+
Sbjct: 61 KVPREGDRPGKGSYWTLDPAAENMFENGN 89
>gnl|CDD|238016 cd00059, FH, Forkhead (FH), also known as a "winged helix". FH is
named for the Drosophila fork head protein, a
transcription factor which promotes terminal rather than
segmental development. This family of transcription
factor domains, which bind to B-DNA as monomers, are
also found in the Hepatocyte nuclear factor (HNF)
proteins, which provide tissue-specific gene regulation.
The structure contains 2 flexible loops or "wings" in
the C-terminal region, hence the term winged helix.
Length = 78
Score = 167 bits (425), Expect = 5e-53
Identities = 54/78 (69%), Positives = 61/78 (78%)
Query: 124 KPPYSYIALITMAILQSPHKKLTLSGICEFIMSRFPYYREKFPAWQNSIRHNLSLNDCFV 183
KPPYSY ALI MAI SP K+LTLS I ++I FPY+R+ WQNSIRHNLSLN CFV
Sbjct: 1 KPPYSYSALIAMAIQSSPEKRLTLSEIYKWISDNFPYFRDAPAGWQNSIRHNLSLNKCFV 60
Query: 184 KIPREPGNPGKGNYWTLD 201
K+PREP PGKG+YWTLD
Sbjct: 61 KVPREPDEPGKGSYWTLD 78
>gnl|CDD|227358 COG5025, COG5025, Transcription factor of the Forkhead/HNF3 family
[Transcription].
Length = 610
Score = 102 bits (255), Expect = 2e-24
Identities = 51/107 (47%), Positives = 60/107 (56%), Gaps = 2/107 (1%)
Query: 113 SDKQDGKNSIVKPPYSYIALITMAILQSPHKKLTLSGICEFIMSRFPYYREKFPAWQNSI 172
SD N KP +SY IT AIL SP K+TLS I +I S PYYR K AWQNSI
Sbjct: 326 SDLSADVNRTSKPAFSYANSITQAILSSPSGKMTLSEIYSWISSNLPYYRHKPTAWQNSI 385
Query: 173 RHNLSLNDCFVKIPREPGNPGKGNYWTLDPMAEDMFDNGSFLRRRKR 219
RHNLSLN F K+PR PGKG +W +D +++ S R
Sbjct: 386 RHNLSLNKSFEKVPRSASQPGKGCFWKIDY--SYIYEKESKRNPRSP 430
Score = 78.3 bits (193), Expect = 3e-16
Identities = 43/85 (50%), Positives = 52/85 (61%)
Query: 124 KPPYSYIALITMAILQSPHKKLTLSGICEFIMSRFPYYREKFPAWQNSIRHNLSLNDCFV 183
PPYSY +AIL SP K LTLS I +I + F YY + WQNSIRHNLSLND F+
Sbjct: 86 VPPYSYATGRGLAILNSPDKPLTLSKIYTWIHNTFFYYAKVVSRWQNSIRHNLSLNDAFI 145
Query: 184 KIPREPGNPGKGNYWTLDPMAEDMF 208
KI G KG++W++ P E F
Sbjct: 146 KIEGRNGAKVKGHFWSIGPGHETQF 170
>gnl|CDD|185638 PTZ00459, PTZ00459, mucin-associated surface protein (MASP);
Provisional.
Length = 291
Score = 31.7 bits (71), Expect = 0.39
Identities = 19/54 (35%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
Query: 21 PHHTGPRTSFDSPLDLRGAPHPGDMCNLSSPSPSSEDDSDADINVESDDGDEQG 74
P G TS DL+G S P P+ EDD D D + E D D+ G
Sbjct: 43 PESKGLETSSQGTQDLKGGA--AGAKENSPPLPTEEDDEDVDDDSEEGDDDDGG 94
>gnl|CDD|227326 COG4993, Gcd, Glucose dehydrogenase [Carbohydrate transport and
metabolism].
Length = 773
Score = 29.8 bits (67), Expect = 2.3
Identities = 25/98 (25%), Positives = 34/98 (34%), Gaps = 23/98 (23%)
Query: 189 PGNPGKGNYWTL--DPMAEDMFDNGSFLRRRKRYKRTPPDFLLRDPHAAAMASFLGSDPY 246
PGN G N+ + DP+ + F N +L + P RDP M + D
Sbjct: 569 PGNHGMFNWGGVSVDPVRQVTFGNPYYLAFVSKL---VP----RDPV-GPMENGAAGDGT 620
Query: 247 HHGLLPHSLQHGGFSFMSPLPPAV---PLLPPSELVVQ 281
G++P P V P L P L Q
Sbjct: 621 EGGVVP----------NYGEPYGVWMGPFLSPGGLPCQ 648
>gnl|CDD|131813 TIGR02766, crypt_chrom_pln, cryptochrome, plant family. At least
five major families of cryptochomes and photolyases
share FAD cofactor binding, sequence homology, and the
ability to react to short wavelengths of visible light.
Photolysases are responsible for light-dependent DNA
repair by removal of two types of uv-induced DNA
dimerizations. Cryptochromes have other functions, often
regulatory and often largely unknown, which may include
circadian clock entrainment and control of development.
Members of this subfamily are known so far only in
plants; they may show some photolyase activity in vitro
but appear mostly to be regulatory proteins that respond
to blue light.
Length = 475
Score = 29.1 bits (65), Expect = 2.7
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 265 PLPPAVPLLPPSELVVQSISLC 286
P P PLLPP +++ +S C
Sbjct: 155 PYDPESPLLPPKKIISGDVSKC 176
>gnl|CDD|227531 COG5206, GPI8, Glycosylphosphatidylinositol transamidase (GPIT),
subunit GPI8 [Posttranslational modification, protein
turnover, chaperones].
Length = 382
Score = 28.8 bits (64), Expect = 3.1
Identities = 34/133 (25%), Positives = 53/133 (39%), Gaps = 22/133 (16%)
Query: 120 NSIVKPPYS--YIALITMAILQSPHKKLTLSGICEFIMSRFPYYREKFPAWQNSIRHNLS 177
N++ YS +A+ + I QS + + S I ++ RF Y+ KF + I L+
Sbjct: 193 NALYDKSYSPNVLAVGSSEIGQSSYSHHSDSLIGVAVIDRFTYFFLKFLE-KIDIGSKLT 251
Query: 178 LNDCFVKIPREPGNPGKGNYWTLDPMAEDMFDNGSFLRRRKRYKRTPPDFLLRDPHAAAM 237
L D + +EP + G + E +FD R P DFL+ D A
Sbjct: 252 LQDLLASLNKEPIHSHVG-------VRELVFD------------RRPSDFLITDFFANVQ 292
Query: 238 ASFLGSDPYHHGL 250
S L H+
Sbjct: 293 NSALELLKSHYHH 305
>gnl|CDD|182461 PRK10438, PRK10438, C-N hydrolase family amidase; Provisional.
Length = 256
Score = 28.6 bits (64), Expect = 3.2
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 161 YREKFPAWQNSIRHNL 176
YREKFPAW+++ L
Sbjct: 240 YREKFPAWRDADEFTL 255
>gnl|CDD|222389 pfam13801, Metal_resist, Heavy-metal resistance. This is a
metal-binding protein which is involved in resistance to
heavy-metal ions. The protein forms a four-helix hooked
hairpin, consisting of two long alpha helices each
flanked by a shorter alpha helix. It binds a metal ion
in a type-2 like centre. It contains two copies of an
LTXXQ motif.
Length = 125
Score = 27.6 bits (62), Expect = 3.9
Identities = 8/36 (22%), Positives = 10/36 (27%), Gaps = 2/36 (5%)
Query: 234 AAAMASFLGSDPYHHGLLPHSLQHGGFSFMSPLPPA 269
A A+ G G + G LPP
Sbjct: 12 VVAGAALRGPGGPGPG--GPRRRPGLGPAALALPPE 45
>gnl|CDD|219406 pfam07420, DUF1509, Protein of unknown function (DUF1509). This
family consists of several uncharacterized viral
proteins from the Marek's disease-like viruses. Members
of this family are typically around 400 residues in
length. The function of this family is unknown.
Length = 377
Score = 28.5 bits (63), Expect = 4.5
Identities = 11/63 (17%), Positives = 20/63 (31%), Gaps = 2/63 (3%)
Query: 19 PQPHHTGPRTSFDSPLDLRGAPHPGDMCNLSSPSPSSEDDSDADINVESDDGDEQGMSNV 78
P P + P D + P P + + + D + I+ +S G M
Sbjct: 260 PSPRPSSPPPEIDE--EYNAQPDPWGTNAQTWDNRAGTPDDGSAISEDSAGGSHHTMRRP 317
Query: 79 RRN 81
+
Sbjct: 318 PHS 320
>gnl|CDD|215742 pfam00136, DNA_pol_B, DNA polymerase family B. This region of DNA
polymerase B appears to consist of more than one
structural domain, possibly including elongation,
DNA-binding and dNTP binding activities.
Length = 458
Score = 28.4 bits (64), Expect = 5.0
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 66 ESDDGDEQGMSNVRRNIAEFHKH 88
GD +G+ VRR+ EF K
Sbjct: 275 YDGKGDIKGVDLVRRDWCEFVKE 297
>gnl|CDD|223433 COG0356, AtpB, F0F1-type ATP synthase, subunit a [Energy production
and conversion].
Length = 246
Score = 28.0 bits (63), Expect = 5.4
Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 5/36 (13%)
Query: 258 GGF--SFMSPLPPAVPLLPPSELV---VQSISLCLR 288
GGF F P P PL+ P E+V + ISL LR
Sbjct: 145 GGFFKEFAFPPFPLAPLMLPLEIVSELAKPISLSLR 180
>gnl|CDD|217311 pfam02995, DUF229, Protein of unknown function (DUF229). Members
of this family are uncharacterized. They are 500-1200
amino acids in length and share a long region
conservation that probably corresponds to several
domains. The Go annotation for the protein indicates
that it is involved in nematode larval development and
has a positive regulation on growth rate.
Length = 492
Score = 27.7 bits (62), Expect = 9.4
Identities = 19/68 (27%), Positives = 26/68 (38%), Gaps = 15/68 (22%)
Query: 196 NYWTLDPMAEDMFDNGSFLRRRKRYKRTPPDFLLRDPHAAAM------------ASFLGS 243
Y T AED G+F + +++ P D LR P A+ LG
Sbjct: 212 GYATA--FAEDWAGIGTFNYLKPGFRKQPTDHYLR-PLLLAVEKHLTYSTRFGLNYCLGR 268
Query: 244 DPYHHGLL 251
P H+ LL
Sbjct: 269 RPTHNYLL 276
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.137 0.434
Gapped
Lambda K H
0.267 0.0768 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 15,322,003
Number of extensions: 1472031
Number of successful extensions: 1321
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1317
Number of HSP's successfully gapped: 26
Length of query: 289
Length of database: 10,937,602
Length adjustment: 96
Effective length of query: 193
Effective length of database: 6,679,618
Effective search space: 1289166274
Effective search space used: 1289166274
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.0 bits)